Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547240 | XP_013456018.1 | 54.348 | 138 | 6 | 2 | 1 | 138 | 1 | 81 | 1.77e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547240 | A0A072UJW8 | 54.348 | 138 | 6 | 2 | 1 | 138 | 1 | 81 | 8.47e-33 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0547240 | Msa0960830 | 0.810064 | 1.387613e-50 | -8.615850e-47 |
| Msa0547240 | Msa0970590 | 0.824435 | 8.083412e-54 | -8.615850e-47 |
| Msa0547240 | Msa1369190 | 0.823643 | 1.240497e-53 | -8.615850e-47 |
| Msa0547240 | Msa1462860 | 0.809293 | 2.033018e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547240 | MtrunA17_Chr4g0029171 | 54.348 | 138 | 6 | 2 | 1 | 138 | 1 | 81 | 1.63e-36 | 120 |
| Msa0547240 | MtrunA17_Chr4g0029141 | 100.000 | 38 | 0 | 0 | 101 | 138 | 5 | 42 | 7.93e-22 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTACATCTTCTGTCTTTC+TGG | 0.082725 | 4_1:+40123654 | None:intergenic |
| CTGACGAGTGAATCATTTAT+TGG | 0.159078 | 4_1:+40121299 | None:intergenic |
| GCGTGACTTCTTCCCAAATA+TGG | 0.193274 | 4_1:+40121664 | None:intergenic |
| CAATGTTCCCTATTTGCTTC+TGG | 0.212465 | 4_1:+40125692 | None:intergenic |
| CTTTCTGGCCAGTAGTAATT+TGG | 0.220298 | 4_1:+40123669 | None:intergenic |
| CAGGTTAGAGAACCCATATT+TGG | 0.234598 | 4_1:-40121677 | Msa0547240:CDS |
| TATTGACCAGTGTCGTTGTT+TGG | 0.287899 | 4_1:-40125509 | Msa0547240:CDS |
| CAGAGTTTGGTAGAGTTCTA+AGG | 0.298740 | 4_1:+40121358 | None:intergenic |
| ATGGTTTCAGGAGCGGTTAT+TGG | 0.312193 | 4_1:-40125550 | Msa0547240:intron |
| GCTCTGAATTTGCGCATTCA+TGG | 0.324967 | 4_1:-40121643 | Msa0547240:CDS |
| ATTGACCAGTGTCGTTGTTT+GGG | 0.357342 | 4_1:-40125508 | Msa0547240:CDS |
| GCGGTTATTGGGAGCTTCAT+TGG | 0.363045 | 4_1:-40125538 | Msa0547240:CDS |
| TTCCACTCTATTATCTTCTT+AGG | 0.368531 | 4_1:+40125831 | None:intergenic |
| TGGTTTCAGGAGCGGTTATT+GGG | 0.378912 | 4_1:-40125549 | Msa0547240:intron |
| CGGTTATTGGGAGCTTCATT+GGG | 0.394085 | 4_1:-40125537 | Msa0547240:CDS |
| TAGTACTAACGTTCAGAGTT+TGG | 0.397283 | 4_1:+40121345 | None:intergenic |
| CGATTCTCAATCTCACTCTC+AGG | 0.403771 | 4_1:-40125454 | Msa0547240:intron |
| CGTGACTTCTTCCCAAATAT+GGG | 0.423758 | 4_1:+40121665 | None:intergenic |
| CTACAGACTTGGGATATTGT+TGG | 0.427971 | 4_1:+40125760 | None:intergenic |
| AGGTTAGAGAACCCATATTT+GGG | 0.430806 | 4_1:-40121676 | Msa0547240:CDS |
| AAAACTGTGGATCAGACATT+TGG | 0.438395 | 4_1:-40121617 | Msa0547240:CDS |
| GATCAACGTAGATACATCTA+TGG | 0.441067 | 4_1:-40125486 | Msa0547240:CDS |
| AGATCATCGAATTATATAAT+CGG | 0.444839 | 4_1:-40125891 | Msa0547240:five_prime_UTR |
| CAAAGGCGCTTCTACAGACT+TGG | 0.451333 | 4_1:+40125749 | None:intergenic |
| AAATCATTTCATCCGGTTTG+CGG | 0.456152 | 4_1:-40125948 | None:intergenic |
| AAACTATGAGTTCCGCAAAC+CGG | 0.475114 | 4_1:+40125936 | None:intergenic |
| GGATAATGTTGGTAATTCTC+AGG | 0.478704 | 4_1:-40123720 | Msa0547240:CDS |
| GGGGTCAAGAGGGTAATTCT+AGG | 0.481972 | 4_1:-40125790 | Msa0547240:five_prime_UTR |
| CAGATCCTGTGTTGAACAAA+CGG | 0.482766 | 4_1:+40124435 | None:intergenic |
| CTGAGAGTGAGATTGAGAAT+CGG | 0.514763 | 4_1:+40125455 | None:intergenic |
| ATTACATTCGCAAGCACTGC+TGG | 0.524218 | 4_1:+40121440 | None:intergenic |
| ATCTAGGTTCAACAGATGAT+CGG | 0.537471 | 4_1:-40124501 | Msa0547240:intron |
| AGTGCACACCAAATTACTAC+TGG | 0.582295 | 4_1:-40123677 | Msa0547240:CDS |
| CAACATGTCCAACACAGGAT+CGG | 0.584746 | 4_1:-40124392 | Msa0547240:intron |
| ATAAAGTCTCTCAGCTCTCG+TGG | 0.589441 | 4_1:-40121587 | Msa0547240:CDS |
| AGTCTCTCAGCTCTCGTGGA+TGG | 0.592923 | 4_1:-40121583 | Msa0547240:CDS |
| GGAACAAACCGATCCTGTGT+TGG | 0.595277 | 4_1:+40124384 | None:intergenic |
| GATGATTAGCATTCTTACAC+AGG | 0.616707 | 4_1:-40125646 | Msa0547240:intron |
| AAAGGCGCTTCTACAGACTT+GGG | 0.618815 | 4_1:+40125750 | None:intergenic |
| TTGATCCCAAACAACGACAC+TGG | 0.620701 | 4_1:+40125503 | None:intergenic |
| GAAATGGACATGGATAATGT+TGG | 0.622790 | 4_1:-40123731 | Msa0547240:CDS |
| AACTCAACAGGAAATGGACA+TGG | 0.624712 | 4_1:-40123741 | Msa0547240:intron |
| GAGCTGAGAGACTTTATCAA+AGG | 0.630771 | 4_1:+40121593 | None:intergenic |
| GATCTCCGTTTGTTCAACAC+AGG | 0.645136 | 4_1:-40124440 | Msa0547240:CDS |
| GCGTTCAACATGTCCAACAC+AGG | 0.650463 | 4_1:-40124397 | Msa0547240:CDS |
| CGCCTAAGAAGATAATAGAG+TGG | 0.651733 | 4_1:-40125833 | Msa0547240:five_prime_UTR |
| ATATTGAAAGTACATATGAG+TGG | 0.700450 | 4_1:+40121407 | None:intergenic |
| CACGACGTCGTATCTCACAA+AGG | 0.727109 | 4_1:+40125732 | None:intergenic |
| GCATTCATGGAACAAAACTG+TGG | 0.738784 | 4_1:-40121630 | Msa0547240:CDS |
| CTTTGTGAGATACGACGTCG+TGG | 0.741887 | 4_1:-40125731 | Msa0547240:five_prime_UTR |
| GATTGTGACATCAGAACATG+CGG | 0.742516 | 4_1:-40121521 | Msa0547240:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGAAAAATATTTTTTCT+GGG | - | chr4_1:40121424-40121443 | Msa0547240:three_prime_UTR | 10.0% |
| !!! | AAAAAGTAATTTTATACATT+CGG | + | chr4_1:40122517-40122536 | None:intergenic | 10.0% |
| !! | ATTGATAAATTAAGATAAAA+AGG | + | chr4_1:40122695-40122714 | None:intergenic | 10.0% |
| !! | TATAAAAAAATTCAGAAAAA+GGG | + | chr4_1:40122992-40123011 | None:intergenic | 10.0% |
| !! | ATATAAAAAAATTCAGAAAA+AGG | + | chr4_1:40122993-40123012 | None:intergenic | 10.0% |
| !! | TTATTAAAAAAAATTCACTA+TGG | - | chr4_1:40123855-40123874 | Msa0547240:intron | 10.0% |
| !! | TATTAAAAAAAATTCACTAT+GGG | - | chr4_1:40123856-40123875 | Msa0547240:intron | 10.0% |
| !!! | ATCAACTTTATTTTTTTTAA+AGG | + | chr4_1:40124741-40124760 | None:intergenic | 10.0% |
| !!! | GAAAAGAAAAATATTTTTTC+TGG | - | chr4_1:40121423-40121442 | Msa0547240:three_prime_UTR | 15.0% |
| !!! | AAAGAAAAATATTTTTTCTG+GGG | - | chr4_1:40121425-40121444 | Msa0547240:three_prime_UTR | 15.0% |
| !!! | ATTTTTGAAATTTTGGTAAT+TGG | - | chr4_1:40121858-40121877 | Msa0547240:intron | 15.0% |
| !!! | TTTATGAAAACAACTTTTAT+TGG | - | chr4_1:40122060-40122079 | Msa0547240:intron | 15.0% |
| !!! | AAAAGTAATTTTATACATTC+GGG | + | chr4_1:40122516-40122535 | None:intergenic | 15.0% |
| !!! | TTTTGTTCTGAATTTTTTTA+TGG | - | chr4_1:40122911-40122930 | Msa0547240:intron | 15.0% |
| !!! | TTTGTTCTGAATTTTTTTAT+GGG | - | chr4_1:40122912-40122931 | Msa0547240:intron | 15.0% |
| !!! | TAATGTAATTATTTTATGCT+TGG | - | chr4_1:40123220-40123239 | Msa0547240:intron | 15.0% |
| !!! | AATTTTGAACATTGATATTT+TGG | - | chr4_1:40123727-40123746 | Msa0547240:CDS | 15.0% |
| !!! | AAATTGACTTTGATTTTTAA+AGG | - | chr4_1:40123811-40123830 | Msa0547240:intron | 15.0% |
| !!! | AATTGACTTTGATTTTTAAA+GGG | - | chr4_1:40123812-40123831 | Msa0547240:intron | 15.0% |
| !!! | ATAGCATAATTTGTTTTTAT+AGG | - | chr4_1:40124440-40124459 | Msa0547240:CDS | 15.0% |
| !!! | TTCCATTGATATTATATTTT+CGG | - | chr4_1:40125398-40125417 | Msa0547240:intron | 15.0% |
| !! | AGATCATCGAATTATATAAT+CGG | - | chr4_1:40121343-40121362 | Msa0547240:three_prime_UTR | 20.0% |
| !!! | ATCGGAATAAATAGTATTTT+CGG | - | chr4_1:40121361-40121380 | Msa0547240:three_prime_UTR | 20.0% |
| !!! | ATTTTCGGAGAAAAATAAAT+AGG | - | chr4_1:40121376-40121395 | Msa0547240:three_prime_UTR | 20.0% |
| !!! | TGAATTTTGATTTGTTGAAA+TGG | - | chr4_1:40121665-40121684 | Msa0547240:CDS | 20.0% |
| !! | TGACTTTATGTTAGAAAATA+TGG | - | chr4_1:40122228-40122247 | Msa0547240:intron | 20.0% |
| !! | TTAAGATAAAAAGGAAATGA+AGG | + | chr4_1:40122686-40122705 | None:intergenic | 20.0% |
| !! | TAGATAAACGAAGATAAAAA+GGG | + | chr4_1:40122718-40122737 | None:intergenic | 20.0% |
| !! | AGAACAAAAAATTCATAACA+GGG | + | chr4_1:40122900-40122919 | None:intergenic | 20.0% |
| !!! | TTATTATTTTGTAGTGTTTG+TGG | - | chr4_1:40123128-40123147 | Msa0547240:intron | 20.0% |
| !!! | AATTATTTTATGCTTGGAAT+TGG | - | chr4_1:40123226-40123245 | Msa0547240:intron | 20.0% |
| !! | ATAAATAACACAAGTAAAAC+CGG | + | chr4_1:40123423-40123442 | None:intergenic | 20.0% |
| !!! | GCTATGTTGTTTTAATATTT+TGG | - | chr4_1:40123694-40123713 | Msa0547240:CDS | 20.0% |
| !!! | GTTTTAATATTTTGGATCAT+AGG | - | chr4_1:40123702-40123721 | Msa0547240:CDS | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | - | chr4_1:40124134-40124153 | Msa0547240:intron | 20.0% |
| !! | AAATAGATGAATTCCAAATA+TGG | - | chr4_1:40124487-40124506 | Msa0547240:intron | 20.0% |
| !! | TTTCTTCTAATATTAGTCAA+AGG | + | chr4_1:40124682-40124701 | None:intergenic | 20.0% |
| !!! | TTTTAAAAAGATCTGTCATT+GGG | + | chr4_1:40124781-40124800 | None:intergenic | 20.0% |
| !!! | ATTTTAAAAAGATCTGTCAT+TGG | + | chr4_1:40124782-40124801 | None:intergenic | 20.0% |
| !!! | ACAGATCTTTTTAAAATTTG+AGG | - | chr4_1:40124785-40124804 | Msa0547240:intron | 20.0% |
| !!! | TAGAAAAGTTGATAGAAAAT+AGG | - | chr4_1:40124873-40124892 | Msa0547240:intron | 20.0% |
| !! | ATTCAAAGTTATTGAAAGAA+AGG | + | chr4_1:40125369-40125388 | None:intergenic | 20.0% |
| !!! | ATGCTAAATTTTTTGTCAAA+CGG | - | chr4_1:40125762-40125781 | Msa0547240:five_prime_UTR | 20.0% |
| !!! | TCGTTTCGTTTTGAATTTTT+CGG | + | chr4_1:40121570-40121589 | None:intergenic | 25.0% |
| ! | CACTAGAAAACCATTAAAAA+AGG | + | chr4_1:40121811-40121830 | None:intergenic | 25.0% |
| ! | GAAATTTAGTTGTTTGTGTT+TGG | - | chr4_1:40121917-40121936 | Msa0547240:intron | 25.0% |
| ! | ATTTGTGTATGTGTTTCATA+TGG | + | chr4_1:40122106-40122125 | None:intergenic | 25.0% |
| ! | ATATGAAACACATACACAAA+TGG | - | chr4_1:40122105-40122124 | Msa0547240:intron | 25.0% |
| ! | CTTTATGTTAGAAAATATGG+TGG | - | chr4_1:40122231-40122250 | Msa0547240:intron | 25.0% |
| !! | TAATTTTATACATTCGGGTA+GGG | + | chr4_1:40122511-40122530 | None:intergenic | 25.0% |
| ! | AAAGGAAATGAAGGTAAAAA+GGG | + | chr4_1:40122677-40122696 | None:intergenic | 25.0% |
| ! | AAAAGGAAATGAAGGTAAAA+AGG | + | chr4_1:40122678-40122697 | None:intergenic | 25.0% |
| ! | CTAGATAAACGAAGATAAAA+AGG | + | chr4_1:40122719-40122738 | None:intergenic | 25.0% |
| !! | CTTTTTATCTTCGTTTATCT+AGG | - | chr4_1:40122717-40122736 | Msa0547240:intron | 25.0% |
| ! | CAGAACAAAAAATTCATAAC+AGG | + | chr4_1:40122901-40122920 | None:intergenic | 25.0% |
| !!! | TTTTCTGCTTATTTTCTTCT+CGG | - | chr4_1:40122937-40122956 | Msa0547240:intron | 25.0% |
| !!! | TTTTTATATGTTCCGATTTG+TGG | - | chr4_1:40123004-40123023 | Msa0547240:intron | 25.0% |
| !! | ATGTTATTGATGATTGAGAT+TGG | - | chr4_1:40123039-40123058 | Msa0547240:intron | 25.0% |
| ! | AGTATAACATATATAACACC+AGG | + | chr4_1:40123372-40123391 | None:intergenic | 25.0% |
| ! | TAAATAACACAAGTAAAACC+GGG | + | chr4_1:40123422-40123441 | None:intergenic | 25.0% |
| !!! | AATTTTGATGAACAATGATG+TGG | - | chr4_1:40123661-40123680 | Msa0547240:CDS | 25.0% |
| ! | AAAAAAATTCACTATGGGTA+CGG | - | chr4_1:40123861-40123880 | Msa0547240:intron | 25.0% |
| !! | AGTTTCTCTTATAGTTTTCA+TGG | + | chr4_1:40124073-40124092 | None:intergenic | 25.0% |
| ! | TTTGTACATACACACTTATA+TGG | - | chr4_1:40124248-40124267 | Msa0547240:intron | 25.0% |
| ! | CTGGATTATAATGAATTGTA+AGG | - | chr4_1:40124353-40124372 | Msa0547240:intron | 25.0% |
| ! | TATAATGAATTGTAAGGTGA+AGG | - | chr4_1:40124359-40124378 | Msa0547240:intron | 25.0% |
| ! | ATAATGAATTGTAAGGTGAA+GGG | - | chr4_1:40124360-40124379 | Msa0547240:intron | 25.0% |
| ! | TTCAATGCATATAACATAAG+TGG | + | chr4_1:40124418-40124437 | None:intergenic | 25.0% |
| !!! | GCATAATTTGTTTTTATAGG+TGG | - | chr4_1:40124443-40124462 | Msa0547240:CDS | 25.0% |
| ! | GTTAGAAACAAATCCATATT+TGG | + | chr4_1:40124503-40124522 | None:intergenic | 25.0% |
| !!! | TGGATTTGTTTCTAACTTAT+AGG | - | chr4_1:40124507-40124526 | Msa0547240:intron | 25.0% |
| !! | TCTATCAACTTTTCTACTAT+AGG | + | chr4_1:40124869-40124888 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTCTT+AGG | + | chr4_1:40124998-40125017 | None:intergenic | 25.0% |
| ! | TATAAGAGAAACCATTAGAA+AGG | - | chr4_1:40125006-40125025 | Msa0547240:intron | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | + | chr4_1:40125055-40125074 | None:intergenic | 25.0% |
| ! | CTTCTATGTTTGCAAATTAT+AGG | + | chr4_1:40125229-40125248 | None:intergenic | 25.0% |
| ! | CTCCGAAAATATAATATCAA+TGG | + | chr4_1:40125403-40125422 | None:intergenic | 25.0% |
| !! | TAACTTTGCATTTGAAATAC+TGG | - | chr4_1:40125437-40125456 | Msa0547240:intron | 25.0% |
| !! | AACTTTGCATTTGAAATACT+GGG | - | chr4_1:40125438-40125457 | Msa0547240:intron | 25.0% |
| ! | TAAACATGAAATTCGTAAGT+CGG | + | chr4_1:40125494-40125513 | None:intergenic | 25.0% |
| !! | ATATTGAAAGTACATATGAG+TGG | + | chr4_1:40125830-40125849 | None:intergenic | 25.0% |
| TTCCACTCTATTATCTTCTT+AGG | + | chr4_1:40121406-40121425 | None:intergenic | 30.0% | |
| !! | TGATTTGTTGAAATGGTTTC+AGG | - | chr4_1:40121672-40121691 | Msa0547240:CDS | 30.0% |
| !!! | TCAGGTTCAACCTTTTTTAA+TGG | - | chr4_1:40121798-40121817 | Msa0547240:intron | 30.0% |
| !! | TAATTGGCAATGCATTGATT+CGG | - | chr4_1:40121874-40121893 | Msa0547240:intron | 30.0% |
| CATACACAAATGGAAGATTT+CGG | - | chr4_1:40122115-40122134 | Msa0547240:intron | 30.0% | |
| ATACACAAATGGAAGATTTC+GGG | - | chr4_1:40122116-40122135 | Msa0547240:intron | 30.0% | |
| GATATCCAACCTAACAAATT+CGG | - | chr4_1:40122159-40122178 | Msa0547240:intron | 30.0% | |
| ! | GTAATTTTATACATTCGGGT+AGG | + | chr4_1:40122512-40122531 | None:intergenic | 30.0% |
| GAGGAATGAAATTAGATCTA+GGG | + | chr4_1:40122583-40122602 | None:intergenic | 30.0% | |
| ! | CAAACGGATTTATGAAGAAA+GGG | + | chr4_1:40122764-40122783 | None:intergenic | 30.0% |
| ! | ACAAACGGATTTATGAAGAA+AGG | + | chr4_1:40122765-40122784 | None:intergenic | 30.0% |
| CGTACCTATATAATAACAGT+CGG | + | chr4_1:40123177-40123196 | None:intergenic | 30.0% | |
| CGACTGTTATTATATAGGTA+CGG | - | chr4_1:40123175-40123194 | Msa0547240:intron | 30.0% | |
| !! | ATTGGTAATTGTGACTTTTG+TGG | - | chr4_1:40123244-40123263 | Msa0547240:intron | 30.0% |
| !!! | TGGTTTTGAACTTCTGATTA+TGG | - | chr4_1:40123267-40123286 | Msa0547240:intron | 30.0% |
| AAAATAATTCACTCAACACC+AGG | + | chr4_1:40123302-40123321 | None:intergenic | 30.0% | |
| !!! | GATTGTCATTATTTTAAGCC+CGG | - | chr4_1:40123401-40123420 | Msa0547240:intron | 30.0% |
| AATTTGAACTCAACAGGAAA+TGG | - | chr4_1:40123487-40123506 | Msa0547240:intron | 30.0% | |
| ACAATGATGTGGTTTGAATT+TGG | - | chr4_1:40123672-40123691 | Msa0547240:CDS | 30.0% | |
| AAAAAATTCACTATGGGTAC+GGG | - | chr4_1:40123862-40123881 | Msa0547240:intron | 30.0% | |
| AAGTTTATGAGAATAGGGTA+TGG | - | chr4_1:40123970-40123989 | Msa0547240:intron | 30.0% | |
| AGTTTATGAGAATAGGGTAT+GGG | - | chr4_1:40123971-40123990 | Msa0547240:intron | 30.0% | |
| !! | ACAAAGACAAAAGCTTTGTT+TGG | + | chr4_1:40124310-40124329 | None:intergenic | 30.0% |
| AATTCATTATAATCCAGCCT+TGG | + | chr4_1:40124350-40124369 | None:intergenic | 30.0% | |
| GGCTGAACATACAATTATAT+TGG | - | chr4_1:40124464-40124483 | Msa0547240:intron | 30.0% | |
| GTGATAAAGACACTAATAGT+CGG | - | chr4_1:40124586-40124605 | Msa0547240:intron | 30.0% | |
| CAGAAGTGAATTTCAAATTG+TGG | - | chr4_1:40124810-40124829 | Msa0547240:intron | 30.0% | |
| TGATAGAAAATAGGCTTAGA+TGG | - | chr4_1:40124882-40124901 | Msa0547240:intron | 30.0% | |
| AAAATAGGCTTAGATGGTTT+GGG | - | chr4_1:40124888-40124907 | Msa0547240:intron | 30.0% | |
| AACCATTAGAAAGGATTTAG+AGG | - | chr4_1:40125015-40125034 | Msa0547240:intron | 30.0% | |
| ATGTCACAATCACACAAAAA+AGG | + | chr4_1:40125704-40125723 | None:intergenic | 30.0% | |
| !! | AGTTCTAAGGAAGAAAAATC+AGG | + | chr4_1:40125866-40125885 | None:intergenic | 30.0% |
| !!! | ATATTTTTTCTGGGGTCAAG+AGG | - | chr4_1:40121433-40121452 | Msa0547240:three_prime_UTR | 35.0% |
| !!! | TATTTTTTCTGGGGTCAAGA+GGG | - | chr4_1:40121434-40121453 | Msa0547240:three_prime_UTR | 35.0% |
| GATGATTAGCATTCTTACAC+AGG | - | chr4_1:40121588-40121607 | Msa0547240:CDS | 35.0% | |
| GATCAACGTAGATACATCTA+TGG | - | chr4_1:40121748-40121767 | Msa0547240:intron | 35.0% | |
| TGTTTGTGTTTGGACATGTT+TGG | - | chr4_1:40121927-40121946 | Msa0547240:intron | 35.0% | |
| TGATTTGAGCTTGTATCTAC+CGG | - | chr4_1:40121961-40121980 | Msa0547240:intron | 35.0% | |
| CATAAGTTGTCAAGTCTCAA+CGG | - | chr4_1:40122034-40122053 | Msa0547240:intron | 35.0% | |
| !! | AAACACCGAATTTGTTAGGT+TGG | + | chr4_1:40122167-40122186 | None:intergenic | 35.0% |
| ! | CCAAAAACACCGAATTTGTT+AGG | + | chr4_1:40122171-40122190 | None:intergenic | 35.0% |
| !!! | CCTAACAAATTCGGTGTTTT+TGG | - | chr4_1:40122168-40122187 | Msa0547240:intron | 35.0% |
| GACCTATAGATTCTCTAGTA+AGG | - | chr4_1:40122290-40122309 | Msa0547240:intron | 35.0% | |
| CTCCTTACTAGAGAATCTAT+AGG | + | chr4_1:40122295-40122314 | None:intergenic | 35.0% | |
| CTCTAGTAAGGAGAATAGAT+TGG | - | chr4_1:40122302-40122321 | Msa0547240:intron | 35.0% | |
| AGTAAGGAGAATAGATTGGA+TGG | - | chr4_1:40122306-40122325 | Msa0547240:intron | 35.0% | |
| ! | TTTTACCCGATTCCAAAACA+CGG | - | chr4_1:40122433-40122452 | Msa0547240:intron | 35.0% |
| GGAGGAATGAAATTAGATCT+AGG | + | chr4_1:40122584-40122603 | None:intergenic | 35.0% | |
| ATCTAGGTTCAACAGATGAT+CGG | - | chr4_1:40122733-40122752 | Msa0547240:intron | 35.0% | |
| TAAATCCGTTTGTTCAACAC+AGG | - | chr4_1:40122772-40122791 | Msa0547240:intron | 35.0% | |
| ! | TATGTTCCGATTTGTGGAAT+CGG | - | chr4_1:40123010-40123029 | Msa0547240:intron | 35.0% |
| TTGGATCTGTTGGATTTGAA+TGG | - | chr4_1:40123081-40123100 | Msa0547240:intron | 35.0% | |
| CTGTTGGATTTGAATGGTTA+TGG | - | chr4_1:40123087-40123106 | Msa0547240:intron | 35.0% | |
| ! | TTTGAATGGTTATGGCTTGT+AGG | - | chr4_1:40123095-40123114 | Msa0547240:intron | 35.0% |
| ATATAATAACAGTCGGTGGT+GGG | + | chr4_1:40123170-40123189 | None:intergenic | 35.0% | |
| TATATAATAACAGTCGGTGG+TGG | + | chr4_1:40123171-40123190 | None:intergenic | 35.0% | |
| ! | ACCACCGACTGTTATTATAT+AGG | - | chr4_1:40123170-40123189 | Msa0547240:intron | 35.0% |
| ACCTATATAATAACAGTCGG+TGG | + | chr4_1:40123174-40123193 | None:intergenic | 35.0% | |
| ! | TGATTATGGATTGAACTTCC+TGG | - | chr4_1:40123281-40123300 | Msa0547240:intron | 35.0% |
| AGTTCAATTCACTCAACATC+AGG | + | chr4_1:40123348-40123367 | None:intergenic | 35.0% | |
| CATGTGAATTTGAACTCAAC+AGG | - | chr4_1:40123481-40123500 | Msa0547240:intron | 35.0% | |
| GAAATGGACATGGATAATGT+TGG | - | chr4_1:40123503-40123522 | Msa0547240:intron | 35.0% | |
| !! | GGATAATGTTGGTAATTCTC+AGG | - | chr4_1:40123514-40123533 | Msa0547240:intron | 35.0% |
| ! | GACAGAAGACAACTTTTATG+TGG | - | chr4_1:40123617-40123636 | Msa0547240:intron | 35.0% |
| AAAAATTCACTATGGGTACG+GGG | - | chr4_1:40123863-40123882 | Msa0547240:intron | 35.0% | |
| ACGGGTAAGTTTATGAGAAT+AGG | - | chr4_1:40123964-40123983 | Msa0547240:intron | 35.0% | |
| CGGGTAAGTTTATGAGAATA+GGG | - | chr4_1:40123965-40123984 | Msa0547240:intron | 35.0% | |
| GTTTATGAGAATAGGGTATG+GGG | - | chr4_1:40123972-40123991 | Msa0547240:intron | 35.0% | |
| AGATCTAGAGATGAATGTGT+TGG | - | chr4_1:40124102-40124121 | Msa0547240:intron | 35.0% | |
| !! | TAGAACATTATGGTGCCATT+TGG | - | chr4_1:40124144-40124163 | Msa0547240:intron | 35.0% |
| AAGACTCAATGACCACATAT+GGG | + | chr4_1:40124659-40124678 | None:intergenic | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr4_1:40124887-40124906 | Msa0547240:intron | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr4_1:40125020-40125039 | None:intergenic | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr4_1:40125039-40125058 | Msa0547240:intron | 35.0% |
| TTATCAGTTATCCCACTAAG+TGG | + | chr4_1:40125110-40125129 | None:intergenic | 35.0% | |
| ACTTAGTGGGATAACTGATA+AGG | - | chr4_1:40125109-40125128 | Msa0547240:intron | 35.0% | |
| GGTTAAACATGAAAGCTGAA+AGG | + | chr4_1:40125538-40125557 | None:intergenic | 35.0% | |
| TTCAGCTTTCATGTTTAACC+AGG | - | chr4_1:40125538-40125557 | Msa0547240:CDS | 35.0% | |
| AGGTTAGAGAACCCATATTT+GGG | - | chr4_1:40125558-40125577 | Msa0547240:intron | 35.0% | |
| AAAACTGTGGATCAGACATT+TGG | - | chr4_1:40125617-40125636 | Msa0547240:intron | 35.0% | |
| TAGTACTAACGTTCAGAGTT+TGG | + | chr4_1:40125892-40125911 | None:intergenic | 35.0% | |
| CGCCTAAGAAGATAATAGAG+TGG | - | chr4_1:40121401-40121420 | Msa0547240:three_prime_UTR | 40.0% | |
| CTACAGACTTGGGATATTGT+TGG | + | chr4_1:40121477-40121496 | None:intergenic | 40.0% | |
| ! | AGCGTTTTCCAGAAGCAAAT+AGG | - | chr4_1:40121534-40121553 | Msa0547240:three_prime_UTR | 40.0% |
| ! | GCGTTTTCCAGAAGCAAATA+GGG | - | chr4_1:40121535-40121554 | Msa0547240:three_prime_UTR | 40.0% |
| CAATGTTCCCTATTTGCTTC+TGG | + | chr4_1:40121545-40121564 | None:intergenic | 40.0% | |
| TGTTGAAATGGTTTCAGGAG+CGG | - | chr4_1:40121677-40121696 | Msa0547240:CDS | 40.0% | |
| ! | TATTGACCAGTGTCGTTGTT+TGG | - | chr4_1:40121725-40121744 | Msa0547240:intron | 40.0% |
| ! | ATTGACCAGTGTCGTTGTTT+GGG | - | chr4_1:40121726-40121745 | Msa0547240:intron | 40.0% |
| CTGAGAGTGAGATTGAGAAT+CGG | + | chr4_1:40121782-40121801 | None:intergenic | 40.0% | |
| ! | AAGATTTCGGGTATGAACCT+GGG | - | chr4_1:40122128-40122147 | Msa0547240:intron | 40.0% |
| !! | TTTGTTAGGTTGGATATCCG+CGG | + | chr4_1:40122157-40122176 | None:intergenic | 40.0% |
| AAGGAGAATAGATTGGATGG+AGG | - | chr4_1:40122309-40122328 | Msa0547240:intron | 40.0% | |
| AGGAGAATAGATTGGATGGA+GGG | - | chr4_1:40122310-40122329 | Msa0547240:intron | 40.0% | |
| TTTACCCGATTCCAAAACAC+GGG | - | chr4_1:40122434-40122453 | Msa0547240:intron | 40.0% | |
| TATACATTCGGGTAGGGTAT+GGG | + | chr4_1:40122505-40122524 | None:intergenic | 40.0% | |
| TTATACATTCGGGTAGGGTA+TGG | + | chr4_1:40122506-40122525 | None:intergenic | 40.0% | |
| AATTTCATTCCTCCACACGA+CGG | - | chr4_1:40122590-40122609 | Msa0547240:intron | 40.0% | |
| GAGATCCTGTGTTGAACAAA+CGG | + | chr4_1:40122780-40122799 | None:intergenic | 40.0% | |
| CAGATCCTGTGTTGAACAAA+CGG | + | chr4_1:40122802-40122821 | None:intergenic | 40.0% | |
| GAACGCAGAAAATGGAGAAA+GGG | + | chr4_1:40122874-40122893 | None:intergenic | 40.0% | |
| TGAACGCAGAAAATGGAGAA+AGG | + | chr4_1:40122875-40122894 | None:intergenic | 40.0% | |
| TTGGATCAGTTGTTTGTGTG+TGG | - | chr4_1:40123058-40123077 | Msa0547240:intron | 40.0% | |
| ATCAGTTGTTTGTGTGTGGT+TGG | - | chr4_1:40123062-40123081 | Msa0547240:intron | 40.0% | |
| ! | ATGGTTATGGCTTGTAGGTA+CGG | - | chr4_1:40123100-40123119 | Msa0547240:intron | 40.0% |
| ! | GGTAATTGTGACTTTTGTGG+TGG | - | chr4_1:40123247-40123266 | Msa0547240:intron | 40.0% |
| GTTGAGTGAATTGAACTTCC+TGG | - | chr4_1:40123351-40123370 | Msa0547240:intron | 40.0% | |
| AACTCAACAGGAAATGGACA+TGG | - | chr4_1:40123493-40123512 | Msa0547240:intron | 40.0% | |
| AGTGCACACCAAATTACTAC+TGG | - | chr4_1:40123557-40123576 | Msa0547240:intron | 40.0% | |
| ! | CTTTCTGGCCAGTAGTAATT+TGG | + | chr4_1:40123568-40123587 | None:intergenic | 40.0% |
| ACCTACATCTTCTGTCTTTC+TGG | + | chr4_1:40123583-40123602 | None:intergenic | 40.0% | |
| AATCAATTTCTCATCCCCGT+TGG | - | chr4_1:40123927-40123946 | Msa0547240:intron | 40.0% | |
| ATCAATTTCTCATCCCCGTT+GGG | - | chr4_1:40123928-40123947 | Msa0547240:intron | 40.0% | |
| !! | GCATGATCTGAAGTTTTCCA+AGG | - | chr4_1:40124330-40124349 | Msa0547240:intron | 40.0% |
| CATATGGGGAAATGAGTATC+AGG | + | chr4_1:40124644-40124663 | None:intergenic | 40.0% | |
| GATACTCATTTCCCCATATG+TGG | - | chr4_1:40124644-40124663 | Msa0547240:intron | 40.0% | |
| AGACTCAATGACCACATATG+GGG | + | chr4_1:40124658-40124677 | None:intergenic | 40.0% | |
| GAAGACTCAATGACCACATA+TGG | + | chr4_1:40124660-40124679 | None:intergenic | 40.0% | |
| CTGATCTACTCTTCTTACGA+CGG | + | chr4_1:40124939-40124958 | None:intergenic | 40.0% | |
| CGTAAGAAGAGTAGATCAGA+TGG | - | chr4_1:40124940-40124959 | Msa0547240:intron | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | - | chr4_1:40124943-40124962 | Msa0547240:intron | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr4_1:40125027-40125046 | Msa0547240:intron | 40.0% | |
| CAGCGTAATTTGATCCATGT+AGG | - | chr4_1:40125079-40125098 | Msa0547240:intron | 40.0% | |
| TGCAAAGTTACTCAAGCATG+TGG | + | chr4_1:40125427-40125446 | None:intergenic | 40.0% | |
| ATACTGGGCATTCATTCTAG+CGG | - | chr4_1:40125453-40125472 | Msa0547240:intron | 40.0% | |
| ACATGAAATTCGTAAGTCGG+TGG | + | chr4_1:40125491-40125510 | None:intergenic | 40.0% | |
| CAAATATGGGTTCTCTAACC+TGG | + | chr4_1:40125559-40125578 | None:intergenic | 40.0% | |
| CAGGTTAGAGAACCCATATT+TGG | - | chr4_1:40125557-40125576 | Msa0547240:intron | 40.0% | |
| CGTGACTTCTTCCCAAATAT+GGG | + | chr4_1:40125572-40125591 | None:intergenic | 40.0% | |
| GCATTCATGGAACAAAACTG+TGG | - | chr4_1:40125604-40125623 | Msa0547240:intron | 40.0% | |
| GAGCTGAGAGACTTTATCAA+AGG | + | chr4_1:40125644-40125663 | None:intergenic | 40.0% | |
| GATTGTGACATCAGAACATG+CGG | - | chr4_1:40125713-40125732 | Msa0547240:five_prime_UTR | 40.0% | |
| CAGAGTTTGGTAGAGTTCTA+AGG | + | chr4_1:40125879-40125898 | None:intergenic | 40.0% | |
| !! | AAAGGCGCTTCTACAGACTT+GGG | + | chr4_1:40121487-40121506 | None:intergenic | 45.0% |
| ATGGTTTCAGGAGCGGTTAT+TGG | - | chr4_1:40121684-40121703 | Msa0547240:intron | 45.0% | |
| TGGTTTCAGGAGCGGTTATT+GGG | - | chr4_1:40121685-40121704 | Msa0547240:intron | 45.0% | |
| CGGTTATTGGGAGCTTCATT+GGG | - | chr4_1:40121697-40121716 | Msa0547240:intron | 45.0% | |
| TTGATCCCAAACAACGACAC+TGG | + | chr4_1:40121734-40121753 | None:intergenic | 45.0% | |
| CGATTCTCAATCTCACTCTC+AGG | - | chr4_1:40121780-40121799 | Msa0547240:intron | 45.0% | |
| GGAATGATTCGAGTGTGAGA+GGG | - | chr4_1:40121895-40121914 | Msa0547240:intron | 45.0% | |
| CATGTCACAAGAGCTTGTAC+CGG | + | chr4_1:40121983-40122002 | None:intergenic | 45.0% | |
| ! | GAAGATTTCGGGTATGAACC+TGG | - | chr4_1:40122127-40122146 | Msa0547240:intron | 45.0% |
| ! | ATATGGTGGAAACTCCGCTT+AGG | - | chr4_1:40122245-40122264 | Msa0547240:intron | 45.0% |
| GCATGTTCAAACCACCTAAG+CGG | + | chr4_1:40122262-40122281 | None:intergenic | 45.0% | |
| GAATAGATTGGATGGAGGGT+AGG | - | chr4_1:40122314-40122333 | Msa0547240:intron | 45.0% | |
| AAAACCCGTCAACTTTGGGT+GGG | + | chr4_1:40122379-40122398 | None:intergenic | 45.0% | |
| ATACCCAAACCCAGTCAAAG+CGG | + | chr4_1:40122404-40122423 | None:intergenic | 45.0% | |
| CTTTGACTGGGTTTGGGTAT+GGG | - | chr4_1:40122404-40122423 | Msa0547240:intron | 45.0% | |
| !!! | CATACCCGTGTTTTGGAATC+GGG | + | chr4_1:40122441-40122460 | None:intergenic | 45.0% |
| !!! | CCATACCCGTGTTTTGGAAT+CGG | + | chr4_1:40122442-40122461 | None:intergenic | 45.0% |
| CGATTCCAAAACACGGGTAT+GGG | - | chr4_1:40122440-40122459 | Msa0547240:intron | 45.0% | |
| GATCTCCGTTTGTTCAACAC+AGG | - | chr4_1:40122794-40122813 | Msa0547240:intron | 45.0% | |
| CAACATGTCCAACACAGGAT+CGG | - | chr4_1:40122842-40122861 | Msa0547240:intron | 45.0% | |
| CAGGGATTGAACGCAGAAAA+TGG | + | chr4_1:40122882-40122901 | None:intergenic | 45.0% | |
| ! | CACTGACCGATTCCACAAAT+CGG | + | chr4_1:40123019-40123038 | None:intergenic | 45.0% |
| TTGTGTGTGGTTGGATCTGT+TGG | - | chr4_1:40123071-40123090 | Msa0547240:intron | 45.0% | |
| ! | TATGGCTTGTAGGTACGGTT+TGG | - | chr4_1:40123105-40123124 | Msa0547240:intron | 45.0% |
| GCCAGAAAGACAGAAGATGT+AGG | - | chr4_1:40123579-40123598 | Msa0547240:intron | 45.0% | |
| CAGAAGATGTAGGTAGCATC+TGG | - | chr4_1:40123589-40123608 | Msa0547240:intron | 45.0% | |
| ATGAGAATAGGGTATGGGGA+TGG | - | chr4_1:40123976-40123995 | Msa0547240:intron | 45.0% | |
| TGAGAATAGGGTATGGGGAT+GGG | - | chr4_1:40123977-40123996 | Msa0547240:intron | 45.0% | |
| ATTAGGCATGGCAATGGGTA+CGG | + | chr4_1:40124024-40124043 | None:intergenic | 45.0% | |
| CAAGCATTATCCCACTAAGC+GGG | + | chr4_1:40124183-40124202 | None:intergenic | 45.0% | |
| CCAAGCATTATCCCACTAAG+CGG | + | chr4_1:40124184-40124203 | None:intergenic | 45.0% | |
| CTTAGTGGGATAATGCTTGG+TGG | - | chr4_1:40124184-40124203 | Msa0547240:intron | 45.0% | |
| !! | GATCTGAAGTTTTCCAAGGC+TGG | - | chr4_1:40124334-40124353 | Msa0547240:intron | 45.0% |
| AGACACTAATAGTCGGTGTG+CGG | - | chr4_1:40124593-40124612 | Msa0547240:intron | 45.0% | |
| ACTCCATTAGAGAGAGAGAG+TGG | - | chr4_1:40124837-40124856 | Msa0547240:intron | 45.0% | |
| CTCCATTAGAGAGAGAGAGT+GGG | - | chr4_1:40124838-40124857 | Msa0547240:intron | 45.0% | |
| TACCCACTCTCTCTCTCTAA+TGG | + | chr4_1:40124843-40124862 | None:intergenic | 45.0% | |
| TCTTCTTACGACGGCATCTA+CGG | + | chr4_1:40124930-40124949 | None:intergenic | 45.0% | |
| AGTCAGGTCAAAAGAGGTAG+AGG | - | chr4_1:40124968-40124987 | Msa0547240:intron | 45.0% | |
| ACTAAGTGGAGTCACCTACA+TGG | + | chr4_1:40125096-40125115 | None:intergenic | 45.0% | |
| ATGTAGGTGACTCCACTTAG+TGG | - | chr4_1:40125095-40125114 | Msa0547240:intron | 45.0% | |
| TGTAGGTGACTCCACTTAGT+GGG | - | chr4_1:40125096-40125115 | Msa0547240:intron | 45.0% | |
| GTGGGATAACTGATAAGGCT+TGG | - | chr4_1:40125114-40125133 | Msa0547240:intron | 45.0% | |
| TGTCAGCATCAGTGCTTCAT+AGG | + | chr4_1:40125172-40125191 | None:intergenic | 45.0% | |
| GTGTTGAGCCTATGCAACAT+CGG | + | chr4_1:40125330-40125349 | None:intergenic | 45.0% | |
| GCGTGACTTCTTCCCAAATA+TGG | + | chr4_1:40125573-40125592 | None:intergenic | 45.0% | |
| ! | GCTCTGAATTTGCGCATTCA+TGG | - | chr4_1:40125591-40125610 | Msa0547240:intron | 45.0% |
| ATAAAGTCTCTCAGCTCTCG+TGG | - | chr4_1:40125647-40125666 | Msa0547240:CDS | 45.0% | |
| ! | ATTACATTCGCAAGCACTGC+TGG | + | chr4_1:40125797-40125816 | None:intergenic | 45.0% |
| !!! | TTATTTTATTTTTGAAATTT+TGG | - | chr4_1:40121851-40121870 | Msa0547240:intron | 5.0% |
| !! | TATTTATATAAAAAAAAAAG+GGG | + | chr4_1:40122542-40122561 | None:intergenic | 5.0% |
| !! | CTATTTATATAAAAAAAAAA+GGG | + | chr4_1:40122543-40122562 | None:intergenic | 5.0% |
| !! | TCTATTTATATAAAAAAAAA+AGG | + | chr4_1:40122544-40122563 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTATGTTATT+TGG | - | chr4_1:40123766-40123785 | Msa0547240:intron | 5.0% |
| GGGGTCAAGAGGGTAATTCT+AGG | - | chr4_1:40121444-40121463 | Msa0547240:three_prime_UTR | 50.0% | |
| !! | CAAAGGCGCTTCTACAGACT+TGG | + | chr4_1:40121488-40121507 | None:intergenic | 50.0% |
| CACGACGTCGTATCTCACAA+AGG | + | chr4_1:40121505-40121524 | None:intergenic | 50.0% | |
| CTTTGTGAGATACGACGTCG+TGG | - | chr4_1:40121503-40121522 | Msa0547240:three_prime_UTR | 50.0% | |
| GCGGTTATTGGGAGCTTCAT+TGG | - | chr4_1:40121696-40121715 | Msa0547240:intron | 50.0% | |
| CGGAATGATTCGAGTGTGAG+AGG | - | chr4_1:40121894-40121913 | Msa0547240:intron | 50.0% | |
| CGTCAACTTTGGGTGGGTAT+GGG | + | chr4_1:40122373-40122392 | None:intergenic | 50.0% | |
| CCATACCCACCCAAAGTTGA+CGG | - | chr4_1:40122371-40122390 | Msa0547240:intron | 50.0% | |
| CATACCCACCCAAAGTTGAC+GGG | - | chr4_1:40122372-40122391 | Msa0547240:intron | 50.0% | |
| GAAAACCCGTCAACTTTGGG+TGG | + | chr4_1:40122380-40122399 | None:intergenic | 50.0% | |
| GGGGAAAACCCGTCAACTTT+GGG | + | chr4_1:40122383-40122402 | None:intergenic | 50.0% | |
| TACCCAAACCCAGTCAAAGC+GGG | + | chr4_1:40122403-40122422 | None:intergenic | 50.0% | |
| GCTTTGACTGGGTTTGGGTA+TGG | - | chr4_1:40122403-40122422 | Msa0547240:intron | 50.0% | |
| ACTGGGTTTGGGTATGGGTA+TGG | - | chr4_1:40122409-40122428 | Msa0547240:intron | 50.0% | |
| CTGGGTTTGGGTATGGGTAT+GGG | - | chr4_1:40122410-40122429 | Msa0547240:intron | 50.0% | |
| CCGATTCCAAAACACGGGTA+TGG | - | chr4_1:40122439-40122458 | Msa0547240:intron | 50.0% | |
| TCCAAAACACGGGTATGGGA+CGG | - | chr4_1:40122444-40122463 | Msa0547240:intron | 50.0% | |
| TAGGGTATGGGTATGGGTTC+GGG | + | chr4_1:40122493-40122512 | None:intergenic | 50.0% | |
| GTAGGGTATGGGTATGGGTT+CGG | + | chr4_1:40122494-40122513 | None:intergenic | 50.0% | |
| TTCGGGTAGGGTATGGGTAT+GGG | + | chr4_1:40122499-40122518 | None:intergenic | 50.0% | |
| ATTCGGGTAGGGTATGGGTA+TGG | + | chr4_1:40122500-40122519 | None:intergenic | 50.0% | |
| TTGTGAGCAGCACTGCTTGA+GGG | + | chr4_1:40122633-40122652 | None:intergenic | 50.0% | |
| TTTGTGAGCAGCACTGCTTG+AGG | + | chr4_1:40122634-40122653 | None:intergenic | 50.0% | |
| ! | GTGCTGCTCACAAACAAAGC+TGG | - | chr4_1:40122640-40122659 | Msa0547240:intron | 50.0% |
| GCGTTCAACATGTCCAACAC+AGG | - | chr4_1:40122837-40122856 | Msa0547240:intron | 50.0% | |
| GGAACAAACCGATCCTGTGT+TGG | + | chr4_1:40122853-40122872 | None:intergenic | 50.0% | |
| ATTCACTATGGGTACGGGGA+TGG | - | chr4_1:40123867-40123886 | Msa0547240:intron | 50.0% | |
| TTCACTATGGGTACGGGGAT+GGG | - | chr4_1:40123868-40123887 | Msa0547240:intron | 50.0% | |
| TTTCTCATCCCCGTTGGGTA+TGG | - | chr4_1:40123933-40123952 | Msa0547240:intron | 50.0% | |
| TTCTCATCCCCGTTGGGTAT+GGG | - | chr4_1:40123934-40123953 | Msa0547240:intron | 50.0% | |
| TTACCCTACCCATACCCAAC+GGG | + | chr4_1:40123945-40123964 | None:intergenic | 50.0% | |
| GTTACCCTACCCATACCCAA+CGG | + | chr4_1:40123946-40123965 | None:intergenic | 50.0% | |
| GTTGGGTATGGGTAGGGTAA+CGG | - | chr4_1:40123945-40123964 | Msa0547240:intron | 50.0% | |
| TTGGGTATGGGTAGGGTAAC+GGG | - | chr4_1:40123946-40123965 | Msa0547240:intron | 50.0% | |
| GAGAATAGGGTATGGGGATG+GGG | - | chr4_1:40123978-40123997 | Msa0547240:intron | 50.0% | |
| TTAGGCATGGCAATGGGTAC+GGG | + | chr4_1:40124023-40124042 | None:intergenic | 50.0% | |
| GTACCCATTGCCATGCCTAA+TGG | - | chr4_1:40124023-40124042 | Msa0547240:intron | 50.0% | |
| CCTCCATTAGGCATGGCAAT+GGG | + | chr4_1:40124029-40124048 | None:intergenic | 50.0% | |
| CCATTGCCATGCCTAATGGA+GGG | - | chr4_1:40124027-40124046 | Msa0547240:intron | 50.0% | |
| TCACTACCCTCCATTAGGCA+TGG | + | chr4_1:40124036-40124055 | None:intergenic | 50.0% | |
| GTCTCTCACTACCCTCCATT+AGG | + | chr4_1:40124041-40124060 | None:intergenic | 50.0% | |
| CATTATCCCACTAAGCGGGT+CGG | + | chr4_1:40124179-40124198 | None:intergenic | 50.0% | |
| CCGCTTAGTGGGATAATGCT+TGG | - | chr4_1:40124181-40124200 | Msa0547240:intron | 50.0% | |
| GTGCGTGTAGCTCAATTGCT+AGG | - | chr4_1:40124564-40124583 | Msa0547240:intron | 50.0% | |
| GACACTAATAGTCGGTGTGC+GGG | - | chr4_1:40124594-40124613 | Msa0547240:intron | 50.0% | |
| TCAGGAATGCAGTGCATTGC+AGG | + | chr4_1:40124626-40124645 | None:intergenic | 50.0% | |
| CTTCTTACGACGGCATCTAC+GGG | + | chr4_1:40124929-40124948 | None:intergenic | 50.0% | |
| AGATCAGATGGAGGAGAGTC+AGG | - | chr4_1:40124952-40124971 | Msa0547240:intron | 50.0% | |
| GAGGAGAGTCAGGTCAAAAG+AGG | - | chr4_1:40124962-40124981 | Msa0547240:intron | 50.0% | |
| CAACACGACTCTAACGCATG+TGG | + | chr4_1:40125265-40125284 | None:intergenic | 50.0% | |
| CACATGCGTTAGAGTCGTGT+TGG | - | chr4_1:40125263-40125282 | Msa0547240:intron | 50.0% | |
| TGCAACATCGGCACTCTTCA+AGG | + | chr4_1:40125318-40125337 | None:intergenic | 50.0% | |
| !! | GAAGAGTGCCGATGTTGCAT+AGG | - | chr4_1:40125319-40125338 | Msa0547240:intron | 50.0% |
| ATTCGTAAGTCGGTGGTGAG+TGG | + | chr4_1:40125484-40125503 | None:intergenic | 50.0% | |
| TGGTGGAAACTCCGCTTAGG+TGG | - | chr4_1:40122248-40122267 | Msa0547240:intron | 55.0% | |
| GATTGGATGGAGGGTAGGCA+TGG | - | chr4_1:40122319-40122338 | Msa0547240:intron | 55.0% | |
| AACTTTGGGTGGGTATGGGC+GGG | + | chr4_1:40122369-40122388 | None:intergenic | 55.0% | |
| CAACTTTGGGTGGGTATGGG+CGG | + | chr4_1:40122370-40122389 | None:intergenic | 55.0% | |
| CCGTCAACTTTGGGTGGGTA+TGG | + | chr4_1:40122374-40122393 | None:intergenic | 55.0% | |
| CGGGGAAAACCCGTCAACTT+TGG | + | chr4_1:40122384-40122403 | None:intergenic | 55.0% | |
| ! | GGGTTTTCCCCGCTTTGACT+GGG | - | chr4_1:40122392-40122411 | Msa0547240:intron | 55.0% |
| TTCCCCGCTTTGACTGGGTT+TGG | - | chr4_1:40122397-40122416 | Msa0547240:intron | 55.0% | |
| TCCCCGCTTTGACTGGGTTT+GGG | - | chr4_1:40122398-40122417 | Msa0547240:intron | 55.0% | |
| ACCCAAACCCAGTCAAAGCG+GGG | + | chr4_1:40122402-40122421 | None:intergenic | 55.0% | |
| CCAAAACACGGGTATGGGAC+GGG | - | chr4_1:40122445-40122464 | Msa0547240:intron | 55.0% | |
| !! | GGGACGGGTAACGGGTATAT+AGG | - | chr4_1:40122460-40122479 | Msa0547240:intron | 55.0% |
| TATGGGTATGGGTTCGGGGT+GGG | + | chr4_1:40122488-40122507 | None:intergenic | 55.0% | |
| AGGGTATGGGTATGGGTTCG+GGG | + | chr4_1:40122492-40122511 | None:intergenic | 55.0% | |
| AGAAAACTGCCGTCGTGTGG+AGG | + | chr4_1:40122602-40122621 | None:intergenic | 55.0% | |
| CTCAGAAAACTGCCGTCGTG+TGG | + | chr4_1:40122605-40122624 | None:intergenic | 55.0% | |
| TCACTATGGGTACGGGGATG+GGG | - | chr4_1:40123869-40123888 | Msa0547240:intron | 55.0% | |
| ATCCCCGTTGGGTATGGGTA+GGG | - | chr4_1:40123939-40123958 | Msa0547240:intron | 55.0% | |
| TACCCTACCCATACCCAACG+GGG | + | chr4_1:40123944-40123963 | None:intergenic | 55.0% | |
| ATAGGGTATGGGGATGGGGA+AGG | - | chr4_1:40123982-40124001 | Msa0547240:intron | 55.0% | |
| CCCATTGCCATGCCTAATGG+AGG | - | chr4_1:40124026-40124045 | Msa0547240:intron | 55.0% | |
| CCCTCCATTAGGCATGGCAA+TGG | + | chr4_1:40124030-40124049 | None:intergenic | 55.0% | |
| TGGAGGGTAGTGAGAGACAG+AGG | - | chr4_1:40124043-40124062 | Msa0547240:intron | 55.0% | |
| GGTCGGCTACATGGACCAAA+TGG | + | chr4_1:40124162-40124181 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCGCTTAGT+GGG | - | chr4_1:40124170-40124189 | Msa0547240:intron | 55.0% | |
| !! | GGCACTCTTCAAGGAGCGTT+CGG | + | chr4_1:40125309-40125328 | None:intergenic | 55.0% |
| AGTCTCTCAGCTCTCGTGGA+TGG | - | chr4_1:40125651-40125670 | Msa0547240:exon | 55.0% | |
| GGTATGAACCTGGGACACCG+CGG | - | chr4_1:40122137-40122156 | Msa0547240:intron | 60.0% | |
| TTGGATATCCGCGGTGTCCC+AGG | + | chr4_1:40122148-40122167 | None:intergenic | 60.0% | |
| GCAACAATACCCGTGCCCGT+GGG | - | chr4_1:40122341-40122360 | Msa0547240:intron | 60.0% | |
| ! | CGGGTTTTCCCCGCTTTGAC+TGG | - | chr4_1:40122391-40122410 | Msa0547240:intron | 60.0% |
| ! | CCCGTCCCATACCCGTGTTT+TGG | + | chr4_1:40122448-40122467 | None:intergenic | 60.0% |
| CACGGGTATGGGACGGGTAA+CGG | - | chr4_1:40122451-40122470 | Msa0547240:intron | 60.0% | |
| ACGGGTATGGGACGGGTAAC+GGG | - | chr4_1:40122452-40122471 | Msa0547240:intron | 60.0% | |
| GTATGGGTATGGGTTCGGGG+TGG | + | chr4_1:40122489-40122508 | None:intergenic | 60.0% | |
| TATGGGTACGGGGATGGGGA+TGG | - | chr4_1:40123873-40123892 | Msa0547240:intron | 60.0% | |
| ATGGGTACGGGGATGGGGAT+GGG | - | chr4_1:40123874-40123893 | Msa0547240:intron | 60.0% | |
| GATGGGATCCCCGAACCCAT+CGG | - | chr4_1:40123891-40123910 | Msa0547240:intron | 60.0% | |
| ATGGGATCCCCGAACCCATC+GGG | - | chr4_1:40123892-40123911 | Msa0547240:intron | 60.0% | |
| CATCCCCGTTGGGTATGGGT+AGG | - | chr4_1:40123938-40123957 | Msa0547240:intron | 60.0% | |
| CATGGCAATGGGTACGGGTG+GGG | + | chr4_1:40124018-40124037 | None:intergenic | 60.0% | |
| GCATGGCAATGGGTACGGGT+GGG | + | chr4_1:40124019-40124038 | None:intergenic | 60.0% | |
| CACTAAGCGGGTCGGCTACA+TGG | + | chr4_1:40124171-40124190 | None:intergenic | 60.0% | |
| CATGTAGCCGACCCGCTTAG+TGG | - | chr4_1:40124169-40124188 | Msa0547240:intron | 60.0% | |
| GGCAACAATACCCGTGCCCG+TGG | - | chr4_1:40122340-40122359 | Msa0547240:intron | 65.0% | |
| TGGGTATGGGCGGGTACCCA+CGG | + | chr4_1:40122360-40122379 | None:intergenic | 65.0% | |
| TGGGATCCCCGAACCCATCG+GGG | - | chr4_1:40123893-40123912 | Msa0547240:intron | 65.0% | |
| ATCCCCGAACCCATCGGGGA+CGG | - | chr4_1:40123897-40123916 | Msa0547240:intron | 65.0% | |
| ! | ATCCCCGTCCCCGATGGGTT+CGG | + | chr4_1:40123904-40123923 | None:intergenic | 65.0% |
| AACCCATCGGGGACGGGGAT+GGG | - | chr4_1:40123904-40123923 | Msa0547240:intron | 65.0% | |
| TTCCCATCCCCGTCCCCGAT+GGG | + | chr4_1:40123909-40123928 | None:intergenic | 65.0% | |
| ATTCCCATCCCCGTCCCCGA+TGG | + | chr4_1:40123910-40123929 | None:intergenic | 65.0% | |
| CAATGGGTACGGGTGGGGAC+GGG | + | chr4_1:40124013-40124032 | None:intergenic | 65.0% | |
| GCAATGGGTACGGGTGGGGA+CGG | + | chr4_1:40124014-40124033 | None:intergenic | 65.0% | |
| GGCATGGCAATGGGTACGGG+TGG | + | chr4_1:40124020-40124039 | None:intergenic | 65.0% | |
| GGGTATGGGCGGGTACCCAC+GGG | + | chr4_1:40122359-40122378 | None:intergenic | 70.0% | |
| TCCCCGAACCCATCGGGGAC+GGG | - | chr4_1:40123898-40123917 | Msa0547240:intron | 70.0% | |
| ! | TCCCCGTCCCCGATGGGTTC+GGG | + | chr4_1:40123903-40123922 | None:intergenic | 70.0% |
| GAACCCATCGGGGACGGGGA+TGG | - | chr4_1:40123903-40123922 | Msa0547240:intron | 70.0% | |
| TGGGCGGGTACCCACGGGCA+CGG | + | chr4_1:40122354-40122373 | None:intergenic | 75.0% | |
| ! | CCCCGTCCCCGATGGGTTCG+GGG | + | chr4_1:40123902-40123921 | None:intergenic | 75.0% |
| CCCCGAACCCATCGGGGACG+GGG | - | chr4_1:40123899-40123918 | Msa0547240:intron | 75.0% | |
| ! | GGGCGGGTACCCACGGGCAC+GGG | + | chr4_1:40122353-40122372 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 40121301 | 40125955 | 40121301 | ID=Msa0547240;Name=Msa0547240 |
| chr4_1 | mRNA | 40121301 | 40125955 | 40121301 | ID=Msa0547240-mRNA-1;Parent=Msa0547240;Name=Msa0547240-mRNA-1;_AED=0.24;_eAED=0.24;_QI=288|0.4|0.66|1|0.4|0.5|6|279|138 |
| chr4_1 | exon | 40121301 | 40121696 | 40121301 | ID=Msa0547240-mRNA-1:exon:10245;Parent=Msa0547240-mRNA-1 |
| chr4_1 | exon | 40123660 | 40123753 | 40123660 | ID=Msa0547240-mRNA-1:exon:10244;Parent=Msa0547240-mRNA-1 |
| chr4_1 | exon | 40124393 | 40124462 | 40124393 | ID=Msa0547240-mRNA-1:exon:10243;Parent=Msa0547240-mRNA-1 |
| chr4_1 | exon | 40124502 | 40124508 | 40124502 | ID=Msa0547240-mRNA-1:exon:10242;Parent=Msa0547240-mRNA-1 |
| chr4_1 | exon | 40125455 | 40125562 | 40125455 | ID=Msa0547240-mRNA-1:exon:10241;Parent=Msa0547240-mRNA-1 |
| chr4_1 | exon | 40125647 | 40125955 | 40125647 | ID=Msa0547240-mRNA-1:exon:10240;Parent=Msa0547240-mRNA-1 |
| chr4_1 | five_prime_UTR | 40125668 | 40125955 | 40125668 | ID=Msa0547240-mRNA-1:five_prime_utr;Parent=Msa0547240-mRNA-1 |
| chr4_1 | CDS | 40125647 | 40125667 | 40125647 | ID=Msa0547240-mRNA-1:cds;Parent=Msa0547240-mRNA-1 |
| chr4_1 | CDS | 40125455 | 40125562 | 40125455 | ID=Msa0547240-mRNA-1:cds;Parent=Msa0547240-mRNA-1 |
| chr4_1 | CDS | 40124502 | 40124508 | 40124502 | ID=Msa0547240-mRNA-1:cds;Parent=Msa0547240-mRNA-1 |
| chr4_1 | CDS | 40124393 | 40124462 | 40124393 | ID=Msa0547240-mRNA-1:cds;Parent=Msa0547240-mRNA-1 |
| chr4_1 | CDS | 40123660 | 40123753 | 40123660 | ID=Msa0547240-mRNA-1:cds;Parent=Msa0547240-mRNA-1 |
| chr4_1 | CDS | 40121580 | 40121696 | 40121580 | ID=Msa0547240-mRNA-1:cds;Parent=Msa0547240-mRNA-1 |
| chr4_1 | three_prime_UTR | 40121301 | 40121579 | 40121301 | ID=Msa0547240-mRNA-1:three_prime_utr;Parent=Msa0547240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
