AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960830 MtrunA17_Chr6g0479251 99.225 129 1 0 1 129 1 129 3.97e-92 262
Msa0960830 MtrunA17_Chr5g0420491 98.450 129 2 0 1 129 1 129 1.02e-91 261
Msa0960830 MtrunA17_Chr8g0391491 40.945 127 75 0 1 127 1 127 9.01e-27 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960830 AT1G48440.1 67.442 129 42 0 1 129 1 129 7.49e-64 191
Msa0960830 AT3G17780.1 65.891 129 44 0 1 129 1 129 2.38e-56 172
Msa0960830 AT5G17190.1 40.310 129 77 0 1 129 1 129 4.63e-31 107
Msa0960830 AT3G03160.1 39.535 129 78 0 1 129 1 129 5.20e-30 105

Find 34 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGCTAAGTTAAGTAATTT+TGG 0.175164 6_3:-81004553 None:intergenic
TTTGCTGGGTTTCAGCTTCT+TGG 0.198760 6_3:+81004869 Msa0960830:CDS
CCATGCTTTGAATATCCTTC+TGG 0.286675 6_3:-81008607 None:intergenic
CTTTGTTTGAAGTGCTTAGA+AGG 0.338557 6_3:-81009048 None:intergenic
ATATTTCACCTATTATATAT+AGG 0.352763 6_3:-81008875 None:intergenic
GAATTCAATGATGTGAGTTT+TGG 0.368084 6_3:-81004607 None:intergenic
TGACTTAGCCTATATATAAT+AGG 0.380558 6_3:+81008867 Msa0960830:three_prime_UTR
TTGCAGCATGCCTACTCTAT+TGG 0.401049 6_3:+81008281 Msa0960830:CDS
TGTACCAAACCTTGAACTAT+TGG 0.407141 6_3:+81008755 Msa0960830:three_prime_UTR
GTTTGTTTGTAGATATATAC+TGG 0.433318 6_3:+81007282 Msa0960830:intron
AAACGGTTCCTCAAAAGCTT+TGG 0.438768 6_3:-81004797 None:intergenic
TGAGGGATCTTTAGTTTGTA+CGG 0.471618 6_3:+81008711 Msa0960830:three_prime_UTR
ATGAGTGTGCCAATAGTTCA+AGG 0.478528 6_3:-81008764 None:intergenic
TGTGCCAATAGTTCAAGGTT+TGG 0.490527 6_3:-81008759 None:intergenic
ATTTCTTTGTGATTATCGAT+CGG 0.513426 6_3:-81004655 None:intergenic
AGAAGCTGAAACCCAGCAAA+GGG 0.519753 6_3:-81004866 None:intergenic
GCGAAATCAGAGAAGTCAAA+CGG 0.558473 6_3:-81004814 None:intergenic
ATTCACTTTACCAATAGAGT+AGG 0.563900 6_3:-81008291 None:intergenic
CCTTCTGGAACTTGCAAATG+CGG 0.568136 6_3:-81008592 None:intergenic
GTTTGTAGATATATACTGGA+AGG 0.575505 6_3:+81007286 Msa0960830:intron
TTCCTCAAAAGCTTTGGTGA+AGG 0.577938 6_3:-81004791 None:intergenic
AAGGGAACAATGAAAAGCGC+AGG 0.586062 6_3:-81004848 None:intergenic
AAGAAGCTGAAACCCAGCAA+AGG 0.595675 6_3:-81004867 None:intergenic
CCAGAAGGATATTCAAAGCA+TGG 0.600664 6_3:+81008607 Msa0960830:CDS
CCGCATTTGCAAGTTCCAGA+AGG 0.606882 6_3:+81008592 Msa0960830:CDS
TATACTGGAAGGCTGAGCAT+AGG 0.629820 6_3:+81007297 Msa0960830:CDS
AATAAGCGATGGCATTGCAG+TGG 0.642539 6_3:+81004711 Msa0960830:exon
AAAAGCGCTTATTTGAACGG+TGG 0.647234 6_3:-81004685 None:intergenic
AGCTTCAATAGCCACCACAT+AGG 0.668450 6_3:-81004744 None:intergenic
AGCAGCAGTACAAACATCAG+AGG 0.677855 6_3:-81007330 None:intergenic
GTGGATGATACTCACCTATG+TGG 0.692942 6_3:+81004730 Msa0960830:CDS
GATGATACTCACCTATGTGG+TGG 0.722992 6_3:+81004733 Msa0960830:CDS
GAAGGATATTCAAAGCATGG+AGG 0.736068 6_3:+81008610 Msa0960830:CDS
TGGTACATCATACATCACAG+TGG 0.808198 6_3:-81008739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGAGAAATATAAATTT+TGG + chr6_3:81008473-81008492 Msa0960830:intron 10.0%
!!! AATGTTTAATTTTTGAGTTT+TGG + chr6_3:81004960-81004979 Msa0960830:intron 15.0%
!!! ATGTTTAATTTTTGAGTTTT+GGG + chr6_3:81004961-81004980 Msa0960830:intron 15.0%
!!! TTTAAATCGTTTTTTCAATT+TGG + chr6_3:81005529-81005548 Msa0960830:intron 15.0%
!!! TTAAATCGTTTTTTCAATTT+GGG + chr6_3:81005530-81005549 Msa0960830:intron 15.0%
!! AAAAAAAATTGTTATCAAAC+AGG - chr6_3:81006381-81006400 None:intergenic 15.0%
!! TTTATTTGTGTTCAAAATTA+TGG - chr6_3:81006855-81006874 None:intergenic 15.0%
!! ATGTATATTTGAACATAATT+TGG + chr6_3:81006918-81006937 Msa0960830:intron 15.0%
!! GAATATATATAGAAGTAATA+AGG - chr6_3:81007797-81007816 None:intergenic 15.0%
!! AATTTACTATATAAATGTCA+TGG - chr6_3:81007926-81007945 None:intergenic 15.0%
!!! TTTTTTATTGTTGTGATATT+TGG + chr6_3:81008816-81008835 Msa0960830:three_prime_UTR 15.0%
!! ATATTTCACCTATTATATAT+AGG - chr6_3:81008878-81008897 None:intergenic 15.0%
!! TTATTTCGTATGAAAATTGA+TGG + chr6_3:81004926-81004945 Msa0960830:intron 20.0%
!! TATTTCGTATGAAAATTGAT+GGG + chr6_3:81004927-81004946 Msa0960830:intron 20.0%
!!! AATTTCTTGTTTTTCTGTAA+TGG + chr6_3:81005010-81005029 Msa0960830:intron 20.0%
!!! ATTTCTTGTTTTTCTGTAAT+GGG + chr6_3:81005011-81005030 Msa0960830:intron 20.0%
!!! TAATTTTGTGTGAAAATTGA+TGG + chr6_3:81005040-81005059 Msa0960830:intron 20.0%
!!! AATTTTGTGTGAAAATTGAT+GGG + chr6_3:81005041-81005060 Msa0960830:intron 20.0%
!!! ATTTTGAAAGTTTTTCAATC+TGG + chr6_3:81005210-81005229 Msa0960830:intron 20.0%
!!! TTTTGAAAGTTTTTCAATCT+GGG + chr6_3:81005211-81005230 Msa0960830:intron 20.0%
!!! TTTTAAGATTACTAGTTATC+TGG + chr6_3:81005318-81005337 Msa0960830:intron 20.0%
!!! TTTAAGATTACTAGTTATCT+GGG + chr6_3:81005319-81005338 Msa0960830:intron 20.0%
!!! TCTTATTCTTTTTAATTGTG+TGG + chr6_3:81005614-81005633 Msa0960830:intron 20.0%
!!! ATTAATTTGATACAATACCT+TGG - chr6_3:81005890-81005909 None:intergenic 20.0%
!! ATTGATATGATACATTATCT+TGG + chr6_3:81005953-81005972 Msa0960830:intron 20.0%
!! TAAAAGAGTAAAATGACATA+AGG - chr6_3:81006115-81006134 None:intergenic 20.0%
!!! TTTGAATCTTTTTTGAAACT+TGG + chr6_3:81006466-81006485 Msa0960830:intron 20.0%
!!! TTGAATCTTTTTTGAAACTT+GGG + chr6_3:81006467-81006486 Msa0960830:intron 20.0%
!!! ATATAGATCTTTTGATAAAG+TGG - chr6_3:81006600-81006619 None:intergenic 20.0%
!! ATCAAAAGATCTATATATCA+TGG + chr6_3:81006604-81006623 Msa0960830:intron 20.0%
!! TCAAAAGATCTATATATCAT+GGG + chr6_3:81006605-81006624 Msa0960830:intron 20.0%
!! AAATTAGATAACACAAATTC+AGG - chr6_3:81006659-81006678 None:intergenic 20.0%
!! AATTTCGACATCAATATAAA+TGG + chr6_3:81006710-81006729 Msa0960830:intron 20.0%
!! GTTTATAACGTTCAAAATTA+TGG - chr6_3:81006833-81006852 None:intergenic 20.0%
!! TTCAAATATACATGATTATC+AGG - chr6_3:81006911-81006930 None:intergenic 20.0%
!! ATATTTGAACATAATTTGGA+TGG + chr6_3:81006922-81006941 Msa0960830:intron 20.0%
!! ATTTAAACACTTGAAAATTG+TGG + chr6_3:81006962-81006981 Msa0960830:intron 20.0%
!!! GAAAACTGTAAGTAATTTTA+CGG + chr6_3:81007370-81007389 Msa0960830:intron 20.0%
!!! ATTAATGATTTCAAGTATAC+TGG + chr6_3:81007493-81007512 Msa0960830:intron 20.0%
!! GAAAGTTACAAAATTAATAC+CGG + chr6_3:81007676-81007695 Msa0960830:intron 20.0%
!! AAAGTTACAAAATTAATACC+GGG + chr6_3:81007677-81007696 Msa0960830:intron 20.0%
!! CCAAAATCAAATGTAAATTT+CGG + chr6_3:81007705-81007724 Msa0960830:intron 20.0%
!!! GATTTTATCAAATTTCACTA+CGG - chr6_3:81008045-81008064 None:intergenic 20.0%
!!! AATACTTCGAATTTTGTTTT+TGG + chr6_3:81008346-81008365 Msa0960830:intron 20.0%
!!! CAAATTGCATGTTTTTTTTA+AGG + chr6_3:81008401-81008420 Msa0960830:intron 20.0%
!!! TGAGAAATATAAATTTTGGA+TGG + chr6_3:81008477-81008496 Msa0960830:intron 20.0%
!! TTTAACCTTATAATGAATGT+TGG + chr6_3:81008512-81008531 Msa0960830:intron 20.0%
!! TTTGTATCTAAATGAAAACA+TGG + chr6_3:81008548-81008567 Msa0960830:intron 20.0%
!! TTTCTCGATACTTTTCTTAT+GGG - chr6_3:81004575-81004594 None:intergenic 25.0%
!! TTTTCTCGATACTTTTCTTA+TGG - chr6_3:81004576-81004595 None:intergenic 25.0%
! ATTTCTTTGTGATTATCGAT+CGG - chr6_3:81004658-81004677 None:intergenic 25.0%
!!! TTTTCTTCGTTTTGATTTAG+TGG + chr6_3:81004896-81004915 Msa0960830:intron 25.0%
!!! TTTCTTCGTTTTGATTTAGT+GGG + chr6_3:81004897-81004916 Msa0960830:intron 25.0%
!!! AATCTTTGTTTTTTGAGTTG+TGG + chr6_3:81005074-81005093 Msa0960830:intron 25.0%
!!! ATCTTTGTTTTTTGAGTTGT+GGG + chr6_3:81005075-81005094 Msa0960830:intron 25.0%
!!! TGGAAAAATCTTTGCTTTTA+GGG + chr6_3:81005152-81005171 Msa0960830:intron 25.0%
!! TTAGGGTTGATTAATTATCT+TGG + chr6_3:81005169-81005188 Msa0960830:intron 25.0%
! TGATTAATTATCTTGGTATG+TGG + chr6_3:81005176-81005195 Msa0960830:intron 25.0%
!! TGATTCAATTGATAAGCTTT+TGG + chr6_3:81005292-81005311 Msa0960830:intron 25.0%
!! GATTCAATTGATAAGCTTTT+GGG + chr6_3:81005293-81005312 Msa0960830:intron 25.0%
!! ATTCAATTGATAAGCTTTTG+GGG + chr6_3:81005294-81005313 Msa0960830:intron 25.0%
! ATATGATACATTATCTTGGA+TGG + chr6_3:81005957-81005976 Msa0960830:intron 25.0%
!!! ATTTTACTCTTTTAGCTTTG+AGG + chr6_3:81006121-81006140 Msa0960830:intron 25.0%
!!! TTTTACTCTTTTAGCTTTGA+GGG + chr6_3:81006122-81006141 Msa0960830:intron 25.0%
!! ATATTGATTGATTGCAAATG+AGG - chr6_3:81006171-81006190 None:intergenic 25.0%
! TTTAGGGATGATTATTTATC+TGG + chr6_3:81006421-81006440 Msa0960830:intron 25.0%
! TTAGGGATGATTATTTATCT+GGG + chr6_3:81006422-81006441 Msa0960830:intron 25.0%
!! CTAGATTCATAAGTTGAATA+GGG + chr6_3:81006507-81006526 Msa0960830:intron 25.0%
! TAAAATGATGTTCAAAGTAG+TGG + chr6_3:81006986-81007005 Msa0960830:intron 25.0%
! TATATGGTTAATTACGTTCA+GGG - chr6_3:81007072-81007091 None:intergenic 25.0%
! ATATATGGTTAATTACGTTC+AGG - chr6_3:81007073-81007092 None:intergenic 25.0%
! GTTCAAGCAGTTTAAATATA+TGG - chr6_3:81007088-81007107 None:intergenic 25.0%
! TTGAAATCTCAAAATGACAA+TGG - chr6_3:81007159-81007178 None:intergenic 25.0%
! GTTTGTTTGTAGATATATAC+TGG + chr6_3:81007282-81007301 Msa0960830:intron 25.0%
!!! AATAAATCTTCGAAAGCATT+TGG + chr6_3:81007553-81007572 Msa0960830:intron 25.0%
!!! CCGAAATTTACATTTGATTT+TGG - chr6_3:81007708-81007727 None:intergenic 25.0%
!!! AATCTGGTGTTATTAAATAG+CGG + chr6_3:81008014-81008033 Msa0960830:intron 25.0%
!! AGTTTCACATTTTATGATTG+AGG - chr6_3:81008180-81008199 None:intergenic 25.0%
! AATCATAAAATGTGAAACTC+TGG + chr6_3:81008181-81008200 Msa0960830:intron 25.0%
! TTTGTAGAGACAAAAAAATG+AGG - chr6_3:81008378-81008397 None:intergenic 25.0%
!!! ATGTTTTTTTTAAGGACACA+CGG + chr6_3:81008409-81008428 Msa0960830:intron 25.0%
! CAATACCAACATTCATTATA+AGG - chr6_3:81008520-81008539 None:intergenic 25.0%
! TGACTTAGCCTATATATAAT+AGG + chr6_3:81008867-81008886 Msa0960830:three_prime_UTR 25.0%
!! TCTCTTTTACATCAAAAGAT+AGG - chr6_3:81008927-81008946 None:intergenic 25.0%
! ATCCTCTTCATATAAAAAAG+TGG + chr6_3:81008954-81008973 Msa0960830:three_prime_UTR 25.0%
! GTAACAAAACATGTAAAAAG+TGG - chr6_3:81008989-81009008 None:intergenic 25.0%
!!! TACATGTTTTGTTACTGTAT+AGG + chr6_3:81008994-81009013 Msa0960830:three_prime_UTR 25.0%
! TGGGCTAAGTTAAGTAATTT+TGG - chr6_3:81004556-81004575 None:intergenic 30.0%
! GAATTCAATGATGTGAGTTT+TGG - chr6_3:81004610-81004629 None:intergenic 30.0%
!! CAAAAAAGCGCTTATTTGAA+CGG - chr6_3:81004691-81004710 None:intergenic 30.0%
!!! ATTTTTGAGTTTTGGGTTTG+TGG + chr6_3:81004968-81004987 Msa0960830:intron 30.0%
!!! TTTTTGAGTTTTGGGTTTGT+GGG + chr6_3:81004969-81004988 Msa0960830:intron 30.0%
TGGAAAAATTGATGTGTTTG+TGG + chr6_3:81005132-81005151 Msa0960830:intron 30.0%
!! GTGGAAAAATCTTTGCTTTT+AGG + chr6_3:81005151-81005170 Msa0960830:intron 30.0%
TAATTATCTTGGTATGTGGT+TGG + chr6_3:81005180-81005199 Msa0960830:intron 30.0%
!!! CTGGGATGGATTTTTTTTTT+TGG + chr6_3:81005229-81005248 Msa0960830:intron 30.0%
! TTCAATTGATAAGCTTTTGG+GGG + chr6_3:81005295-81005314 Msa0960830:intron 30.0%
CAATGTAATCTCACATATGT+CGG + chr6_3:81005419-81005438 Msa0960830:intron 30.0%
CTTCTAATCAAAGTCATGAA+AGG - chr6_3:81005471-81005490 None:intergenic 30.0%
TGAGAAGATCCATATATCAT+AGG + chr6_3:81005652-81005671 Msa0960830:intron 30.0%
GAGAAGATCCATATATCATA+GGG + chr6_3:81005653-81005672 Msa0960830:intron 30.0%
!! CAAAAGTACCCTATGATATA+TGG - chr6_3:81005664-81005683 None:intergenic 30.0%
!! TATATCATAGGGTACTTTTG+TGG + chr6_3:81005664-81005683 Msa0960830:intron 30.0%
!! ATATCATAGGGTACTTTTGT+GGG + chr6_3:81005665-81005684 Msa0960830:intron 30.0%
!!! CTTAAGCTTTTTTTGACATG+AGG - chr6_3:81005707-81005726 None:intergenic 30.0%
TTGGAATTTGAAAACGACAA+CGG + chr6_3:81005763-81005782 Msa0960830:intron 30.0%
!! TAGCGTTGAAATTTTGACAA+CGG - chr6_3:81006269-81006288 None:intergenic 30.0%
CTTTCCAAATAGAATCTAAG+TGG - chr6_3:81006298-81006317 None:intergenic 30.0%
CACTTAGATTCTATTTGGAA+AGG + chr6_3:81006296-81006315 Msa0960830:intron 30.0%
! GTTATCAAACAGGTCTATTT+TGG - chr6_3:81006371-81006390 None:intergenic 30.0%
!!! AATTTTTTTTCACCAGCTTG+TGG + chr6_3:81006391-81006410 Msa0960830:intron 30.0%
TGATTATTTATCTGGGTATG+TGG + chr6_3:81006429-81006448 Msa0960830:intron 30.0%
! GCTAGATTCATAAGTTGAAT+AGG + chr6_3:81006506-81006525 Msa0960830:intron 30.0%
! GTTTCTGTTTGTTGATTGTT+TGG + chr6_3:81006567-81006586 Msa0960830:intron 30.0%
! ATATATCATGGGTACTTTTG+TGG + chr6_3:81006616-81006635 Msa0960830:intron 30.0%
! TATATCATGGGTACTTTTGT+GGG + chr6_3:81006617-81006636 Msa0960830:intron 30.0%
ATATGGTTAATTACGTTCAG+GGG - chr6_3:81007071-81007090 None:intergenic 30.0%
! TAAGTTGAAGTTGAAAAACG+TGG - chr6_3:81007199-81007218 None:intergenic 30.0%
GTTTGTAGATATATACTGGA+AGG + chr6_3:81007286-81007305 Msa0960830:intron 30.0%
GAAATCATTAATCCAAGCTA+TGG - chr6_3:81007485-81007504 None:intergenic 30.0%
!! TCGAAAGCATTTGGTAATAA+AGG + chr6_3:81007562-81007581 Msa0960830:intron 30.0%
! ACATTCTTTGCATGTTTCTA+AGG + chr6_3:81007602-81007621 Msa0960830:intron 30.0%
! GTTTCATGCACTTTTATGAT+TGG + chr6_3:81007654-81007673 Msa0960830:intron 30.0%
AACAGTTAAACTTATGTGCA+GGG - chr6_3:81007746-81007765 None:intergenic 30.0%
TAACAGTTAAACTTATGTGC+AGG - chr6_3:81007747-81007766 None:intergenic 30.0%
TAGAAGTAATAAGGACATGA+AGG - chr6_3:81007788-81007807 None:intergenic 30.0%
TGCATATCACAGAAAATAGT+GGG - chr6_3:81008144-81008163 None:intergenic 30.0%
TTGCATATCACAGAAAATAG+TGG - chr6_3:81008145-81008164 None:intergenic 30.0%
ATTCACTTTACCAATAGAGT+AGG - chr6_3:81008294-81008313 None:intergenic 30.0%
! AGTGAATTTCTGTGTCTTTT+TGG + chr6_3:81008307-81008326 Msa0960830:intron 30.0%
! TTAGTAAAAGAGAGCTTTTG+AGG + chr6_3:81008693-81008712 Msa0960830:three_prime_UTR 30.0%
! TAGTAAAAGAGAGCTTTTGA+GGG + chr6_3:81008694-81008713 Msa0960830:three_prime_UTR 30.0%
!!! CTCCACTTTTTTATATGAAG+AGG - chr6_3:81008959-81008978 None:intergenic 30.0%
! TTTTCATTGTTCCCTTTGCT+GGG + chr6_3:81004855-81004874 Msa0960830:CDS 35.0%
!! TGTGAAAATTGATGGGTTTG+TGG + chr6_3:81005048-81005067 Msa0960830:intron 35.0%
!!! TTTTTGAGTTGTGGGTTTGT+AGG + chr6_3:81005083-81005102 Msa0960830:intron 35.0%
!! GAAAGTTTTTCAATCTGGGA+TGG + chr6_3:81005215-81005234 Msa0960830:intron 35.0%
!! TGCTAGATTCACTTTTGAGT+TGG + chr6_3:81005253-81005272 Msa0960830:intron 35.0%
!!! TAGATTCACTTTTGAGTTGG+TGG + chr6_3:81005256-81005275 Msa0960830:intron 35.0%
!!! AGATTCACTTTTGAGTTGGT+GGG + chr6_3:81005257-81005276 Msa0960830:intron 35.0%
CGACATATGTGAGATTACAT+TGG - chr6_3:81005421-81005440 None:intergenic 35.0%
! CAATTTGGGATGAATTGTGT+TGG + chr6_3:81005544-81005563 Msa0960830:intron 35.0%
CTAGATTCAGAAGTTGAGTA+GGG + chr6_3:81005570-81005589 Msa0960830:intron 35.0%
! GCTTAAGTTGCAGTTGAAAA+AGG + chr6_3:81005720-81005739 Msa0960830:intron 35.0%
TAAGTTGCAGTTGAAAAAGG+AGG + chr6_3:81005723-81005742 Msa0960830:intron 35.0%
AAGGAAGATTGTGAAATGCA+TGG + chr6_3:81005806-81005825 Msa0960830:intron 35.0%
AGGAAGATTGTGAAATGCAT+GGG + chr6_3:81005807-81005826 Msa0960830:intron 35.0%
TTTATTCCTGTAACAGAGGA+AGG - chr6_3:81006057-81006076 None:intergenic 35.0%
ACACTTTATTCCTGTAACAG+AGG - chr6_3:81006061-81006080 None:intergenic 35.0%
TCCACCACTTAGATTCTATT+TGG + chr6_3:81006291-81006310 Msa0960830:intron 35.0%
TCCAAATAGAATCTAAGTGG+TGG - chr6_3:81006295-81006314 None:intergenic 35.0%
AAACTTGGGATGAATTGTGT+TGG + chr6_3:81006481-81006500 Msa0960830:intron 35.0%
! TAAGTTGAATAGGGCTTAAG+AGG + chr6_3:81006516-81006535 Msa0960830:intron 35.0%
AAGTTGAATAGGGCTTAAGA+GGG + chr6_3:81006517-81006536 Msa0960830:intron 35.0%
! CTGTTTGTTGATTGTTTGGT+AGG + chr6_3:81006571-81006590 Msa0960830:intron 35.0%
GTTAATGCAGTCCAAATATG+TGG + chr6_3:81006732-81006751 Msa0960830:intron 35.0%
GAACACAATAGCCACATATT+TGG - chr6_3:81006746-81006765 None:intergenic 35.0%
! AAGTAGTGGTTAGTTGTGTT+CGG + chr6_3:81007000-81007019 Msa0960830:intron 35.0%
!! GATGGTTGATGACTATCAAA+AGG - chr6_3:81007049-81007068 None:intergenic 35.0%
AATGGAAAATGAGTCGAGTT+GGG - chr6_3:81007141-81007160 None:intergenic 35.0%
! GCATGTTTCTAAGGATTTGT+TGG + chr6_3:81007611-81007630 Msa0960830:intron 35.0%
!!! CATTTGATTTTGGTTCTTCC+CGG - chr6_3:81007698-81007717 None:intergenic 35.0%
ATCTTCATCTCCTTATTGCT+TGG + chr6_3:81007833-81007852 Msa0960830:intron 35.0%
!! GTTTGTTGTTGACTTCAATC+TGG + chr6_3:81007998-81008017 Msa0960830:intron 35.0%
TTGTACTAGATAGCGTATCA+CGG - chr6_3:81008077-81008096 None:intergenic 35.0%
AATATAGCATTGCTGTGTAG+CGG + chr6_3:81008107-81008126 Msa0960830:intron 35.0%
ATGTCTGAGCAGGAAAAAAA+TGG - chr6_3:81008231-81008250 None:intergenic 35.0%
! ACACGGTATTGTGATTTGTA+GGG + chr6_3:81008426-81008445 Msa0960830:intron 35.0%
TCTAAATGAAAACATGGACG+TGG + chr6_3:81008554-81008573 Msa0960830:intron 35.0%
!! TGAGGGATCTTTAGTTTGTA+CGG + chr6_3:81008711-81008730 Msa0960830:three_prime_UTR 35.0%
TGTACCAAACCTTGAACTAT+TGG + chr6_3:81008755-81008774 Msa0960830:three_prime_UTR 35.0%
!! AAAAGCGCTTATTTGAACGG+TGG - chr6_3:81004688-81004707 None:intergenic 40.0%
!!! GCGCTTTTTTGAATAAGCGA+TGG + chr6_3:81004700-81004719 Msa0960830:exon 40.0%
! TTCCTTCACCAAAGCTTTTG+AGG + chr6_3:81004789-81004808 Msa0960830:CDS 40.0%
! TTCCTCAAAAGCTTTGGTGA+AGG - chr6_3:81004794-81004813 None:intergenic 40.0%
AAACGGTTCCTCAAAAGCTT+TGG - chr6_3:81004800-81004819 None:intergenic 40.0%
GCGAAATCAGAGAAGTCAAA+CGG - chr6_3:81004817-81004836 None:intergenic 40.0%
! CTTTTCATTGTTCCCTTTGC+TGG + chr6_3:81004854-81004873 Msa0960830:CDS 40.0%
!! TTTGTAGGTTGGTATGTGGT+TGG + chr6_3:81005098-81005117 Msa0960830:intron 40.0%
!! TGTGGTTGGTTGTGGAATTT+TGG + chr6_3:81005112-81005131 Msa0960830:intron 40.0%
TTACTAGTTATCTGGGTGTG+TGG + chr6_3:81005326-81005345 Msa0960830:intron 40.0%
!! AATTATCAGTGTCGACGTGT+TGG - chr6_3:81005378-81005397 None:intergenic 40.0%
! TTTGGGATGAATTGTGTTGG+TGG + chr6_3:81005547-81005566 Msa0960830:intron 40.0%
GCTAGATTCAGAAGTTGAGT+AGG + chr6_3:81005569-81005588 Msa0960830:intron 40.0%
!! GGTGGTGTTACAATTAGTGT+TGG + chr6_3:81005744-81005763 Msa0960830:intron 40.0%
GAAAAGTTGGATAGGCAGAA+AGG + chr6_3:81005787-81005806 Msa0960830:intron 40.0%
CAGAGAGAAACAAAGATCAG+TGG - chr6_3:81005860-81005879 None:intergenic 40.0%
TTTCTCTCTGTCTTCATCCA+AGG + chr6_3:81005870-81005889 Msa0960830:intron 40.0%
ACATTATCTTGGATGGAGAG+TGG + chr6_3:81005964-81005983 Msa0960830:intron 40.0%
CATTATCTTGGATGGAGAGT+GGG + chr6_3:81005965-81005984 Msa0960830:intron 40.0%
ATTATCTTGGATGGAGAGTG+GGG + chr6_3:81005966-81005985 Msa0960830:intron 40.0%
! TACTTCAAGTGTGCTGATCT+TGG - chr6_3:81006003-81006022 None:intergenic 40.0%
AAGGTTGTGAAACACATTGG+GGG - chr6_3:81006038-81006057 None:intergenic 40.0%
GAAGGTTGTGAAACACATTG+GGG - chr6_3:81006039-81006058 None:intergenic 40.0%
GGAAGGTTGTGAAACACATT+GGG - chr6_3:81006040-81006059 None:intergenic 40.0%
AGGAAGGTTGTGAAACACAT+TGG - chr6_3:81006041-81006060 None:intergenic 40.0%
TTGATTGCAAATGAGGCACA+AGG - chr6_3:81006164-81006183 None:intergenic 40.0%
!! TGAAATTTTGACAACGGCAG+CGG - chr6_3:81006263-81006282 None:intergenic 40.0%
! ATCCGCTACAAGCTAGATTT+TGG - chr6_3:81006322-81006341 None:intergenic 40.0%
! AAAATCTAGCTTGTAGCGGA+TGG + chr6_3:81006321-81006340 Msa0960830:intron 40.0%
!!! TTTTTTTCACCAGCTTGTGG+TGG + chr6_3:81006394-81006413 Msa0960830:intron 40.0%
!! AGCTTGTGGTGGATAGTTTA+GGG + chr6_3:81006405-81006424 Msa0960830:intron 40.0%
TATGTGGCTATTGTGTTCAG+TGG + chr6_3:81006748-81006767 Msa0960830:intron 40.0%
CAATGGAAAATGAGTCGAGT+TGG - chr6_3:81007142-81007161 None:intergenic 40.0%
GTTGAAGTTGAAAAACGTGG+TGG - chr6_3:81007196-81007215 None:intergenic 40.0%
GATGATGAAAGACCATAGCT+TGG + chr6_3:81007470-81007489 Msa0960830:intron 40.0%
TACCATCAAGCCAAGCAATA+AGG - chr6_3:81007846-81007865 None:intergenic 40.0%
! CACACGGTATTGTGATTTGT+AGG + chr6_3:81008425-81008444 Msa0960830:intron 40.0%
! TAGTCTCTGTACGCACTTTT+AGG - chr6_3:81008453-81008472 None:intergenic 40.0%
! CCATGCTTTGAATATCCTTC+TGG - chr6_3:81008610-81008629 None:intergenic 40.0%
CCAGAAGGATATTCAAAGCA+TGG + chr6_3:81008607-81008626 Msa0960830:CDS 40.0%
GAAGGATATTCAAAGCATGG+AGG + chr6_3:81008610-81008629 Msa0960830:CDS 40.0%
TGGTACATCATACATCACAG+TGG - chr6_3:81008742-81008761 None:intergenic 40.0%
TGTGCCAATAGTTCAAGGTT+TGG - chr6_3:81008762-81008781 None:intergenic 40.0%
ATGAGTGTGCCAATAGTTCA+AGG - chr6_3:81008767-81008786 None:intergenic 40.0%
! CACTCAGCTCTGTATTTTCA+TGG + chr6_3:81008787-81008806 Msa0960830:three_prime_UTR 40.0%
AATAAGCGATGGCATTGCAG+TGG + chr6_3:81004711-81004730 Msa0960830:exon 45.0%
GTGGATGATACTCACCTATG+TGG + chr6_3:81004730-81004749 Msa0960830:CDS 45.0%
GATGATACTCACCTATGTGG+TGG + chr6_3:81004733-81004752 Msa0960830:CDS 45.0%
AGCTTCAATAGCCACCACAT+AGG - chr6_3:81004747-81004766 None:intergenic 45.0%
! AAGGGAACAATGAAAAGCGC+AGG - chr6_3:81004851-81004870 None:intergenic 45.0%
AGAAGCTGAAACCCAGCAAA+GGG - chr6_3:81004869-81004888 None:intergenic 45.0%
AAGAAGCTGAAACCCAGCAA+AGG - chr6_3:81004870-81004889 None:intergenic 45.0%
TTTGCTGGGTTTCAGCTTCT+TGG + chr6_3:81004869-81004888 Msa0960830:CDS 45.0%
TGAGTTGTGGGTTTGTAGGT+TGG + chr6_3:81005087-81005106 Msa0960830:intron 45.0%
!! TGGGTTTGTAGGTTGGTATG+TGG + chr6_3:81005094-81005113 Msa0960830:intron 45.0%
! TCTTGGTATGTGGTTGGTTG+TGG + chr6_3:81005186-81005205 Msa0960830:intron 45.0%
GTCAAACAGTGACAAATGCC+AGG + chr6_3:81005443-81005462 Msa0960830:intron 45.0%
!! TCAAAGTCATGAAAGGTGCC+TGG - chr6_3:81005464-81005483 None:intergenic 45.0%
!! TAGAAGTGTCAGTGCTACAG+AGG + chr6_3:81005485-81005504 Msa0960830:intron 45.0%
TCAGAAGTTGAGTAGGGCTT+AGG + chr6_3:81005576-81005595 Msa0960830:intron 45.0%
AAGTTGAGTAGGGCTTAGGA+GGG + chr6_3:81005580-81005599 Msa0960830:intron 45.0%
! GGTACTTTTGTGGGATCTAC+TGG + chr6_3:81005674-81005693 Msa0960830:intron 45.0%
! ACTTTTGTGGGATCTACTGG+TGG + chr6_3:81005677-81005696 Msa0960830:intron 45.0%
GTTGCAGTTGAAAAAGGAGG+TGG + chr6_3:81005726-81005745 Msa0960830:intron 45.0%
AAACGACAACGGCGAAAAGT+TGG + chr6_3:81005774-81005793 Msa0960830:intron 45.0%
ACAACGGCGAAAAGTTGGAT+AGG + chr6_3:81005779-81005798 Msa0960830:intron 45.0%
AGTGGCAATTGAAAGAGCAG+TGG - chr6_3:81005842-81005861 None:intergenic 45.0%
TCACAACCTTCCTCTGTTAC+AGG + chr6_3:81006048-81006067 Msa0960830:intron 45.0%
!! GAAATTTTGACAACGGCAGC+GGG - chr6_3:81006262-81006281 None:intergenic 45.0%
! GGCCAAAATCTAGCTTGTAG+CGG + chr6_3:81006317-81006336 Msa0960830:intron 45.0%
CTAAACTATCCACCACAAGC+TGG - chr6_3:81006406-81006425 None:intergenic 45.0%
!! CAGCTTGTGGTGGATAGTTT+AGG + chr6_3:81006404-81006423 Msa0960830:intron 45.0%
CTTGGGATGAATTGTGTTGG+TGG + chr6_3:81006484-81006503 Msa0960830:intron 45.0%
! GGTACTTTTGTGGGATCTAC+TGG + chr6_3:81005674-81005693 Msa0960830:intron 45.0%
TGGCTATTGTGTTCAGTGGA+TGG + chr6_3:81006752-81006771 Msa0960830:intron 45.0%
GGCTATTGTGTTCAGTGGAT+GGG + chr6_3:81006753-81006772 Msa0960830:intron 45.0%
! TAGTGGTTAGTTGTGTTCGG+TGG + chr6_3:81007003-81007022 Msa0960830:intron 45.0%
GGTTAATTACGTTCAGGGGA+TGG - chr6_3:81007067-81007086 None:intergenic 45.0%
TATACTGGAAGGCTGAGCAT+AGG + chr6_3:81007297-81007316 Msa0960830:CDS 45.0%
AGCAGCAGTACAAACATCAG+AGG - chr6_3:81007333-81007352 None:intergenic 45.0%
TAAATTTCGGCCATCATCGC+AGG + chr6_3:81007718-81007737 Msa0960830:intron 45.0%
! CTCCTTATTGCTTGGCTTGA+TGG + chr6_3:81007841-81007860 Msa0960830:intron 45.0%
! GTGTGTTGGTATGTGTGACT+CGG - chr6_3:81007892-81007911 None:intergenic 45.0%
! TGAGCTTTGTATGTCTGAGC+AGG - chr6_3:81008241-81008260 None:intergenic 45.0%
TTGCAGCATGCCTACTCTAT+TGG + chr6_3:81008281-81008300 Msa0960830:CDS 45.0%
AAAACATGGACGTGGTGACA+GGG + chr6_3:81008562-81008581 Msa0960830:intron 45.0%
!! CCTTCTGGAACTTGCAAATG+CGG - chr6_3:81008595-81008614 None:intergenic 45.0%
!!! GAGTTTTGGGTTTGTGGGTG+TGG + chr6_3:81004974-81004993 Msa0960830:intron 50.0%
! GGTTGGTATGTGGTTGGTTG+TGG + chr6_3:81005104-81005123 Msa0960830:intron 50.0%
GAAGTTGAGTAGGGCTTAGG+AGG + chr6_3:81005579-81005598 Msa0960830:intron 50.0%
!! ATGAGTCGAGTTGGGTGGAA+AGG - chr6_3:81007133-81007152 None:intergenic 50.0%
!! GGAAAATGAGTCGAGTTGGG+TGG - chr6_3:81007138-81007157 None:intergenic 50.0%
!! CTCGGCATCTCTTGCTTTTG+AGG - chr6_3:81007874-81007893 None:intergenic 50.0%
TGGTGTGTGTGTGTGTGTGT+TGG - chr6_3:81007906-81007925 None:intergenic 50.0%
GAAAACATGGACGTGGTGAC+AGG + chr6_3:81008561-81008580 Msa0960830:intron 50.0%
CCGCATTTGCAAGTTCCAGA+AGG + chr6_3:81008592-81008611 Msa0960830:CDS 50.0%
! GTCAGTGCTACAGAGGTGTG+TGG + chr6_3:81005492-81005511 Msa0960830:intron 55.0%
! GTGCTACAGAGGTGTGTGGT+TGG + chr6_3:81005496-81005515 Msa0960830:intron 55.0%
! CAGAGGTGTGTGGTTGGTTG+CGG + chr6_3:81005502-81005521 Msa0960830:intron 55.0%
GTTGGGTGGAAAGGAAGGCT+GGG - chr6_3:81007124-81007143 None:intergenic 55.0%
AGTTGGGTGGAAAGGAAGGC+TGG - chr6_3:81007125-81007144 None:intergenic 55.0%
!! GTCGAGTTGGGTGGAAAGGA+AGG - chr6_3:81007129-81007148 None:intergenic 55.0%
GGGAAGCGGTTCAAGCAGAG+AGG - chr6_3:81006242-81006261 None:intergenic 60.0%
TTGACAACGGCAGCGGGAAG+CGG - chr6_3:81006256-81006275 None:intergenic 60.0%
GTGCAGGGTTCCTGCGATGA+TGG - chr6_3:81007731-81007750 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 81004537 81009056 81004537 ID=Msa0960830;Name=Msa0960830
chr6_3 mRNA 81004537 81009056 81004537 ID=Msa0960830-mRNA-1;Parent=Msa0960830;Name=Msa0960830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=182|1|1|1|0.33|0.75|4|395|129
chr6_3 exon 81004537 81004890 81004537 ID=Msa0960830-mRNA-1:exon:14523;Parent=Msa0960830-mRNA-1
chr6_3 exon 81007294 81007376 81007294 ID=Msa0960830-mRNA-1:exon:14524;Parent=Msa0960830-mRNA-1
chr6_3 exon 81008247 81008302 81008247 ID=Msa0960830-mRNA-1:exon:14525;Parent=Msa0960830-mRNA-1
chr6_3 exon 81008583 81009056 81008583 ID=Msa0960830-mRNA-1:exon:14526;Parent=Msa0960830-mRNA-1
chr6_3 five_prime_UTR 81004537 81004718 81004537 ID=Msa0960830-mRNA-1:five_prime_utr;Parent=Msa0960830-mRNA-1
chr6_3 CDS 81004719 81004890 81004719 ID=Msa0960830-mRNA-1:cds;Parent=Msa0960830-mRNA-1
chr6_3 CDS 81007294 81007376 81007294 ID=Msa0960830-mRNA-1:cds;Parent=Msa0960830-mRNA-1
chr6_3 CDS 81008247 81008302 81008247 ID=Msa0960830-mRNA-1:cds;Parent=Msa0960830-mRNA-1
chr6_3 CDS 81008583 81008661 81008583 ID=Msa0960830-mRNA-1:cds;Parent=Msa0960830-mRNA-1
chr6_3 three_prime_UTR 81008662 81009056 81008662 ID=Msa0960830-mRNA-1:three_prime_utr;Parent=Msa0960830-mRNA-1
Gene Sequence

>Msa0960830

ATGGCATTGCAGTGGATGATACTCACCTATGTGGTGGCTATTGAAGCTGCTGTAGCGATTCTTCTAACACTTCCTTCACCAAAGCTTTTGAGGAACCGTTTGACTTCTCTGATTTCGCTTATTCTTCAACCTGCGCTTTTCATTGTTCCCTTTGCTGGGTTTCAGCTTCTTGATATATACTGGAAGGCTGAGCATAGGTTGATGTGTACCTCTGATGTTTGTACTGCTGCTGAGAGAGATCGCTATGAGAAAACTACATACAAAGCTCAGAGAAACGTGATACTGTGTATTGCAGCATGCCTACTCTATTGGGCTATATACCGCATTTGCAAGTTCCAGAAGGATATTCAAAGCATGGAGGAAGTTGAGAAGAGAATCAAGTCGAAGTAG

Protein sequence

>Msa0960830

MALQWMILTYVVAIEAAVAILLTLPSPKLLRNRLTSLISLILQPALFIVPFAGFQLLDIYWKAEHRLMCTSDVCTAAERDRYEKTTYKAQRNVILCIAACLLYWAIYRICKFQKDIQSMEEVEKRIKSK*