Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549350 | XP_003606815.2 | 100.000 | 68 | 0 | 0 | 41 | 108 | 2 | 69 | 1.70e-40 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549350 | sp|O22860|RL38_ARATH | 92.647 | 68 | 5 | 0 | 41 | 108 | 2 | 69 | 1.09e-40 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549350 | G7JEV4 | 100.000 | 68 | 0 | 0 | 41 | 108 | 2 | 69 | 8.11e-41 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0549350 | Msa0685460 | 0.846495 | 2.095742e-59 | -8.615850e-47 |
| Msa0549350 | Msa0685470 | 0.894090 | 3.419547e-75 | -8.615850e-47 |
| Msa0549350 | Msa1295170 | 0.808604 | 2.854257e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549350 | MtrunA17_Chr4g0033761 | 100.000 | 68 | 0 | 0 | 41 | 108 | 2 | 69 | 1.56e-44 | 139 |
| Msa0549350 | MtrunA17_Chr8g0376751 | 95.522 | 67 | 3 | 0 | 42 | 108 | 3 | 69 | 1.42e-41 | 131 |
| Msa0549350 | MtrunA17_Chr2g0285451 | 94.118 | 68 | 4 | 0 | 41 | 108 | 2 | 69 | 2.57e-41 | 130 |
| Msa0549350 | MtrunA17_Chr7g0216191 | 91.176 | 68 | 6 | 0 | 41 | 108 | 2 | 69 | 1.39e-37 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549350 | AT2G43460.1 | 92.647 | 68 | 5 | 0 | 41 | 108 | 2 | 69 | 1.11e-41 | 132 |
| Msa0549350 | AT3G59540.1 | 92.647 | 68 | 5 | 0 | 41 | 108 | 2 | 69 | 1.11e-41 | 132 |
Find 28 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTATATTGAAGTCTTTC+CGG | 0.185075 | 4_1:+44455294 | Msa0549350:three_prime_UTR |
| CTAAGTCAATAGAGGTTAAT+TGG | 0.262257 | 4_1:+44455341 | Msa0549350:three_prime_UTR |
| TAAGCAAATCAATGAGATTA+AGG | 0.290766 | 4_1:+44454421 | Msa0549350:CDS |
| TACAATTTCAAATAACGGTT+TGG | 0.311618 | 4_1:-44452285 | None:intergenic |
| ACAATTTCAAATAACGGTTT+GGG | 0.350894 | 4_1:-44452284 | None:intergenic |
| TTTGCTTCTCTTGATCTTCA+CGG | 0.377542 | 4_1:-44454480 | None:intergenic |
| CAAAGATGTTGTCAAGTTCA+AGG | 0.412153 | 4_1:+44454499 | Msa0549350:CDS |
| TTTGTTACAATTTCAAATAA+CGG | 0.425065 | 4_1:-44452290 | None:intergenic |
| AGACTTCAATATAAGATAAG+AGG | 0.449457 | 4_1:-44455288 | None:intergenic |
| TCACTCAGTACACATTTAAC+CGG | 0.452174 | 4_1:-44455111 | None:intergenic |
| TTCAAATAACGGTTTGGGAG+TGG | 0.459079 | 4_1:-44452279 | None:intergenic |
| GTGAAGATCAAGTGTTGCTT+TGG | 0.469681 | 4_1:+44455130 | Msa0549350:three_prime_UTR |
| GCAAGACTTGTAATTCTATC+CGG | 0.485897 | 4_1:+44455092 | Msa0549350:exon |
| ACAAAGTGTGTACAAGTACT+TGG | 0.506752 | 4_1:-44454531 | None:intergenic |
| TTAATCTCATTGATTTGCTT+AGG | 0.531275 | 4_1:-44454419 | None:intergenic |
| CTTACGACTCTCATTATGAA+TGG | 0.536568 | 4_1:+44455206 | Msa0549350:three_prime_UTR |
| GTCAATAGAGGTTAATTGGA+TGG | 0.539702 | 4_1:+44455345 | Msa0549350:three_prime_UTR |
| GTTATTTGAAATTGTAACAA+AGG | 0.546608 | 4_1:+44452292 | Msa0549350:CDS |
| TACTGACAAGAAAATAGAGT+TGG | 0.557694 | 4_1:-44455230 | None:intergenic |
| AGGACTTCCTCCTCACTGCT+AGG | 0.557805 | 4_1:+44454441 | Msa0549350:CDS |
| TCATAATGAGAGTCGTAAGC+TGG | 0.559002 | 4_1:-44455202 | None:intergenic |
| CCTCCTCACTGCTAGGAGGA+AGG | 0.566472 | 4_1:+44454448 | Msa0549350:CDS |
| TCGAAATTAACAGCGATGGA+AGG | 0.581722 | 4_1:+44452179 | None:intergenic |
| GACGACAACGACGTCGCAGT+CGG | 0.604065 | 4_1:-44452206 | None:intergenic |
| CCTTCCTCCTAGCAGTGAGG+AGG | 0.657731 | 4_1:-44454448 | None:intergenic |
| ACTTCCTCCTCACTGCTAGG+AGG | 0.666318 | 4_1:+44454444 | Msa0549350:CDS |
| TACAACGTAAACAAGCTCAC+CGG | 0.667353 | 4_1:-44452243 | None:intergenic |
| CATCCTTCCTCCTAGCAGTG+AGG | 0.669946 | 4_1:-44454451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAATATA+AGG | - | chr4_1:44452511-44452530 | None:intergenic | 0.0% |
| !!! | TTATTATATTTTTTTTTATT+TGG | + | chr4_1:44454326-44454345 | Msa0549350:intron | 0.0% |
| !!! | AATTTTTTTTACTCAATTTT+AGG | + | chr4_1:44454176-44454195 | Msa0549350:intron | 10.0% |
| !!! | ATTTTTTTTACTCAATTTTA+GGG | + | chr4_1:44454177-44454196 | Msa0549350:intron | 10.0% |
| !!! | TATTTTTTTTTATTTGGATT+TGG | + | chr4_1:44454332-44454351 | Msa0549350:intron | 10.0% |
| !! | AATCTATAAAGTAAATAATA+AGG | + | chr4_1:44454774-44454793 | Msa0549350:intron | 10.0% |
| !! | ATCTATAAAGTAAATAATAA+GGG | + | chr4_1:44454775-44454794 | Msa0549350:intron | 10.0% |
| !! | TTTGTTACAATTTCAAATAA+CGG | - | chr4_1:44452293-44452312 | None:intergenic | 15.0% |
| !! | AAATTGCTTAAAATACAAAA+TGG | + | chr4_1:44452449-44452468 | Msa0549350:intron | 15.0% |
| !! | TTTGTTACTCATTTATATTT+GGG | - | chr4_1:44453110-44453129 | None:intergenic | 15.0% |
| !!! | TTTTGTTACTCATTTATATT+TGG | - | chr4_1:44453111-44453130 | None:intergenic | 15.0% |
| !! | ATTGAGTAAAAAAAATTCAT+AGG | - | chr4_1:44454173-44454192 | None:intergenic | 15.0% |
| !! | GTGTAATAATTGTTTAAAAA+TGG | + | chr4_1:44454751-44454770 | Msa0549350:intron | 15.0% |
| !! | TCTATAAAGTAAATAATAAG+GGG | + | chr4_1:44454776-44454795 | Msa0549350:intron | 15.0% |
| !!! | TGTTATTTGTTATTTATTCT+AGG | + | chr4_1:44454979-44454998 | Msa0549350:intron | 15.0% |
| !!! | GTTATTTGAAATTGTAACAA+AGG | + | chr4_1:44452292-44452311 | Msa0549350:CDS | 20.0% |
| !!! | AAAATTCATGATTCAAGTTT+TGG | - | chr4_1:44452383-44452402 | None:intergenic | 20.0% |
| !!! | TGTATTTTAAGCAATTTCAA+AGG | - | chr4_1:44452446-44452465 | None:intergenic | 20.0% |
| !! | ATGTTTATGACGTTAAAATA+TGG | + | chr4_1:44452568-44452587 | Msa0549350:intron | 20.0% |
| !!! | TGTATTTTTATAGAGTTGTT+TGG | - | chr4_1:44452728-44452747 | None:intergenic | 20.0% |
| !! | AACAACTCTATAAAAATACA+TGG | + | chr4_1:44452728-44452747 | Msa0549350:intron | 20.0% |
| !! | TACTTATGCTAAAATTACAA+AGG | + | chr4_1:44453185-44453204 | Msa0549350:intron | 20.0% |
| !! | AATTACATAGATCAAATTGA+TGG | + | chr4_1:44453594-44453613 | Msa0549350:intron | 20.0% |
| !!! | TTTTCATACATTTTTCCTTT+TGG | - | chr4_1:44453747-44453766 | None:intergenic | 20.0% |
| !!! | TCAAATTTGTCTATCTTTTA+AGG | - | chr4_1:44453774-44453793 | None:intergenic | 20.0% |
| !!! | TCAATTCACAATTTTTTTGT+AGG | + | chr4_1:44454063-44454082 | Msa0549350:intron | 20.0% |
| !!! | ACAATTTTTTTGTAGGAAAT+TGG | + | chr4_1:44454070-44454089 | Msa0549350:intron | 20.0% |
| !! | AAAACATTGAAAATCAAGAT+AGG | - | chr4_1:44454113-44454132 | None:intergenic | 20.0% |
| !! | ATTATACATTGATCTGAATT+AGG | + | chr4_1:44454238-44454257 | Msa0549350:intron | 20.0% |
| !! | TTATACATTGATCTGAATTA+GGG | + | chr4_1:44454239-44454258 | Msa0549350:intron | 20.0% |
| !! | ACATTTCAATAAACACAAAA+AGG | - | chr4_1:44454397-44454416 | None:intergenic | 20.0% |
| !! | AAACAATTATTACACCTTTA+AGG | - | chr4_1:44454746-44454765 | None:intergenic | 20.0% |
| !! | TGAGATTTATGAATAAGAAA+TGG | - | chr4_1:44454849-44454868 | None:intergenic | 20.0% |
| !! | TCAGATTTATGAATATGAAA+TGG | - | chr4_1:44454944-44454963 | None:intergenic | 20.0% |
| !! | ACTACAAGACAAAAATATAT+TGG | - | chr4_1:44455168-44455187 | None:intergenic | 20.0% |
| !! | AAACATATTCAAAAAACAAC+CGG | - | chr4_1:44455316-44455335 | None:intergenic | 20.0% |
| ! | ACAATTTCAAATAACGGTTT+GGG | - | chr4_1:44452287-44452306 | None:intergenic | 25.0% |
| ! | TACAATTTCAAATAACGGTT+TGG | - | chr4_1:44452288-44452307 | None:intergenic | 25.0% |
| !! | ATTTGAAATTGTAACAAAGG+TGG | + | chr4_1:44452295-44452314 | Msa0549350:intron | 25.0% |
| ! | TTGCTTAAAATACAAAATGG+AGG | + | chr4_1:44452452-44452471 | Msa0549350:intron | 25.0% |
| !! | CGGAAAATTCTAATTTTACA+TGG | - | chr4_1:44452598-44452617 | None:intergenic | 25.0% |
| !! | AAAATTAGAATTTTCCGACA+AGG | + | chr4_1:44452601-44452620 | Msa0549350:intron | 25.0% |
| !! | AAAATTCGATTTCTAGATCA+AGG | - | chr4_1:44452686-44452705 | None:intergenic | 25.0% |
| !!! | ACCATTTTGAAACCTTTATA+AGG | + | chr4_1:44452905-44452924 | Msa0549350:intron | 25.0% |
| ! | ACCTTATAAAGGTTTCAAAA+TGG | - | chr4_1:44452909-44452928 | None:intergenic | 25.0% |
| !! | AACCTTTATAAGGTTGATTA+TGG | + | chr4_1:44452915-44452934 | Msa0549350:intron | 25.0% |
| ! | AACCATAATCAACCTTATAA+AGG | - | chr4_1:44452920-44452939 | None:intergenic | 25.0% |
| !!! | AAAAGCTTTAAAACATGCTA+CGG | + | chr4_1:44453451-44453470 | Msa0549350:intron | 25.0% |
| !! | CTCTAGTTCAATTCAAATAT+TGG | + | chr4_1:44453499-44453518 | Msa0549350:intron | 25.0% |
| ! | AAACTACACATTGTAAAGAT+GGG | + | chr4_1:44453707-44453726 | Msa0549350:intron | 25.0% |
| !! | TACCGTCTTTTCATAATATA+GGG | + | chr4_1:44453891-44453910 | Msa0549350:intron | 25.0% |
| ! | AACCCTATATTATGAAAAGA+CGG | - | chr4_1:44453896-44453915 | None:intergenic | 25.0% |
| ! | AACAAGTGAAATTGAATCAA+TGG | + | chr4_1:44454207-44454226 | Msa0549350:intron | 25.0% |
| !!! | TGGTTTTTGATTTTCAAACT+TGG | + | chr4_1:44454268-44454287 | Msa0549350:intron | 25.0% |
| !!! | TTAATCTCATTGATTTGCTT+AGG | - | chr4_1:44454422-44454441 | None:intergenic | 25.0% |
| ! | TAAGCAAATCAATGAGATTA+AGG | + | chr4_1:44454421-44454440 | Msa0549350:CDS | 25.0% |
| ! | TAATTCTCAAAAACTAACCT+GGG | - | chr4_1:44454601-44454620 | None:intergenic | 25.0% |
| ! | ATAATTCTCAAAAACTAACC+TGG | - | chr4_1:44454602-44454621 | None:intergenic | 25.0% |
| !!! | TAGTTTTTGAGAATTATCGT+TGG | + | chr4_1:44454605-44454624 | Msa0549350:intron | 25.0% |
| ! | CAACAGAAATAAACAATCTA+TGG | - | chr4_1:44454706-44454725 | None:intergenic | 25.0% |
| !!! | CATAGATTGTTTATTTCTGT+TGG | + | chr4_1:44454704-44454723 | Msa0549350:intron | 25.0% |
| !!! | TTATTTCTGTTGGTTGTTAT+AGG | + | chr4_1:44454714-44454733 | Msa0549350:intron | 25.0% |
| ! | TCTTATTCATAAATCTCAAC+TGG | + | chr4_1:44454851-44454870 | Msa0549350:intron | 25.0% |
| ! | CTTATTCATAAATCTCAACT+GGG | + | chr4_1:44454852-44454871 | Msa0549350:intron | 25.0% |
| ! | TTATGAATATGAAATGGAAG+AGG | - | chr4_1:44454938-44454957 | None:intergenic | 25.0% |
| !! | AGATGTAGAAATTTGAGTTT+AGG | + | chr4_1:44455025-44455044 | Msa0549350:intron | 25.0% |
| ! | AGACTTCAATATAAGATAAG+AGG | - | chr4_1:44455291-44455310 | None:intergenic | 25.0% |
| ! | ATCTTATATTGAAGTCTTTC+CGG | + | chr4_1:44455294-44455313 | Msa0549350:three_prime_UTR | 25.0% |
| !! | TCAATCAGTAGAAAGTTTTT+AGG | + | chr4_1:44455384-44455403 | Msa0549350:three_prime_UTR | 25.0% |
| ! | TCGTCAAACTCTAAAAATTC+CGG | + | chr4_1:44452224-44452243 | Msa0549350:CDS | 30.0% |
| TTAAGCAATTTCAAAGGAGT+TGG | - | chr4_1:44452440-44452459 | None:intergenic | 30.0% | |
| TAATTAATCTCGTTCCTTGT+CGG | - | chr4_1:44452618-44452637 | None:intergenic | 30.0% | |
| !! | GAGTCAAAGTTTTAATGCTA+CGG | - | chr4_1:44452771-44452790 | None:intergenic | 30.0% |
| ATTTACGACATTTAGCCAAT+TGG | + | chr4_1:44453350-44453369 | Msa0549350:intron | 30.0% | |
| !! | AAAGCTTTAAAACATGCTAC+GGG | + | chr4_1:44453452-44453471 | Msa0549350:intron | 30.0% |
| CAAACTACACATTGTAAAGA+TGG | + | chr4_1:44453706-44453725 | Msa0549350:intron | 30.0% | |
| TTTGATGCATTAGCAAACAA+TGG | + | chr4_1:44453789-44453808 | Msa0549350:intron | 30.0% | |
| TTGATGCATTAGCAAACAAT+GGG | + | chr4_1:44453790-44453809 | Msa0549350:intron | 30.0% | |
| CACAAACTAAACTCTTAAAC+CGG | + | chr4_1:44453827-44453846 | Msa0549350:intron | 30.0% | |
| ! | GTACCGTCTTTTCATAATAT+AGG | + | chr4_1:44453890-44453909 | Msa0549350:intron | 30.0% |
| ! | TCGAAGGTTTGAGAATTTTA+GGG | - | chr4_1:44453935-44453954 | None:intergenic | 30.0% |
| GATCTGAATTAGGGAATTTA+TGG | + | chr4_1:44454248-44454267 | Msa0549350:intron | 30.0% | |
| !! | TCAAACTTGGTAGTTGATAA+AGG | + | chr4_1:44454281-44454300 | Msa0549350:intron | 30.0% |
| !! | CAAACTTGGTAGTTGATAAA+GGG | + | chr4_1:44454282-44454301 | Msa0549350:intron | 30.0% |
| AATTCTCAAAAACTAACCTG+GGG | - | chr4_1:44454600-44454619 | None:intergenic | 30.0% | |
| ! | TTATCGTTGGTTGTATGTTA+TGG | + | chr4_1:44454618-44454637 | Msa0549350:intron | 30.0% |
| ATAATAAGGGGATTGTGTAA+TGG | + | chr4_1:44454788-44454807 | Msa0549350:intron | 30.0% | |
| TGTAATGGCCAAATAGATAT+GGG | + | chr4_1:44454803-44454822 | Msa0549350:intron | 30.0% | |
| ATATTCTCCCCATATCTATT+TGG | - | chr4_1:44454814-44454833 | None:intergenic | 30.0% | |
| TTATGAATAAGAAATGGCAG+AGG | - | chr4_1:44454843-44454862 | None:intergenic | 30.0% | |
| TTGGGAACAACTTATGATAT+GGG | + | chr4_1:44454898-44454917 | Msa0549350:intron | 30.0% | |
| TCATATTCATAAATCTGAGC+TGG | + | chr4_1:44454946-44454965 | Msa0549350:intron | 30.0% | |
| AGTGAAACGTAAATGTAAGT+AGG | - | chr4_1:44455055-44455074 | None:intergenic | 30.0% | |
| TACTGACAAGAAAATAGAGT+TGG | - | chr4_1:44455233-44455252 | None:intergenic | 30.0% | |
| !! | TTTTTGAGCTAAGTCAATAG+AGG | + | chr4_1:44455333-44455352 | Msa0549350:three_prime_UTR | 30.0% |
| CTAAGTCAATAGAGGTTAAT+TGG | + | chr4_1:44455341-44455360 | Msa0549350:three_prime_UTR | 30.0% | |
| !! | TCATGATTCAAGTTTTGGCA+AGG | - | chr4_1:44452378-44452397 | None:intergenic | 35.0% |
| AAGGAGTTGGATGACTTTAT+TGG | - | chr4_1:44452427-44452446 | None:intergenic | 35.0% | |
| ! | AAACTTTGACTCGACCTAAA+AGG | + | chr4_1:44452779-44452798 | Msa0549350:intron | 35.0% |
| ACCTAAAAGGTTCATGAGAA+GGG | + | chr4_1:44452792-44452811 | Msa0549350:intron | 35.0% | |
| ! | GCCTCATGTTTGTCATTTAA+AGG | + | chr4_1:44452820-44452839 | Msa0549350:intron | 35.0% |
| GCCTTTAAATGACAAACATG+AGG | - | chr4_1:44452824-44452843 | None:intergenic | 35.0% | |
| AAATATCCAAACGTATCCGA+TGG | - | chr4_1:44452978-44452997 | None:intergenic | 35.0% | |
| !! | CTTAATTGAGCATTGACCAT+TGG | + | chr4_1:44453025-44453044 | Msa0549350:intron | 35.0% |
| ! | AAGGAGATTTTCCTAGAAGT+TGG | + | chr4_1:44453204-44453223 | Msa0549350:intron | 35.0% |
| AAGCTGAAAAACCAACTTCT+AGG | - | chr4_1:44453218-44453237 | None:intergenic | 35.0% | |
| GTCGTACATTTGTTTCCAAA+AGG | + | chr4_1:44453729-44453748 | Msa0549350:intron | 35.0% | |
| TGATGCATTAGCAAACAATG+GGG | + | chr4_1:44453791-44453810 | Msa0549350:intron | 35.0% | |
| ! | CTCGAAGGTTTGAGAATTTT+AGG | - | chr4_1:44453936-44453955 | None:intergenic | 35.0% |
| TCCTCCCCAAATATTACAAT+CGG | - | chr4_1:44453963-44453982 | None:intergenic | 35.0% | |
| GAAACACTGCAAAGAATCAA+TGG | - | chr4_1:44454031-44454050 | None:intergenic | 35.0% | |
| CTGTGTTGTGATTTGAAAGA+TGG | + | chr4_1:44454359-44454378 | Msa0549350:intron | 35.0% | |
| TTTGCTTCTCTTGATCTTCA+CGG | - | chr4_1:44454483-44454502 | None:intergenic | 35.0% | |
| CAAAGATGTTGTCAAGTTCA+AGG | + | chr4_1:44454499-44454518 | Msa0549350:CDS | 35.0% | |
| ACAAAGTGTGTACAAGTACT+TGG | - | chr4_1:44454534-44454553 | None:intergenic | 35.0% | |
| ATTCTCAAAAACTAACCTGG+GGG | - | chr4_1:44454599-44454618 | None:intergenic | 35.0% | |
| ! | TTCTGTTGGTTGTTATAGGT+CGG | + | chr4_1:44454718-44454737 | Msa0549350:intron | 35.0% |
| GTGTAATGGCCAAATAGATA+TGG | + | chr4_1:44454802-44454821 | Msa0549350:intron | 35.0% | |
| GTAATGGCCAAATAGATATG+GGG | + | chr4_1:44454804-44454823 | Msa0549350:intron | 35.0% | |
| !!! | TGCTATTTTTCTCTCTCAGT+TGG | + | chr4_1:44454879-44454898 | Msa0549350:intron | 35.0% |
| !!! | GCTATTTTTCTCTCTCAGTT+GGG | + | chr4_1:44454880-44454899 | Msa0549350:intron | 35.0% |
| GTTGGGAACAACTTATGATA+TGG | + | chr4_1:44454897-44454916 | Msa0549350:intron | 35.0% | |
| TGGGAACAACTTATGATATG+GGG | + | chr4_1:44454899-44454918 | Msa0549350:intron | 35.0% | |
| !! | CATTTACGTTTCACTTTTGC+AGG | + | chr4_1:44455060-44455079 | Msa0549350:intron | 35.0% |
| GCAAGACTTGTAATTCTATC+CGG | + | chr4_1:44455092-44455111 | Msa0549350:exon | 35.0% | |
| TCACTCAGTACACATTTAAC+CGG | - | chr4_1:44455114-44455133 | None:intergenic | 35.0% | |
| CTTACGACTCTCATTATGAA+TGG | + | chr4_1:44455206-44455225 | Msa0549350:three_prime_UTR | 35.0% | |
| GTCAATAGAGGTTAATTGGA+TGG | + | chr4_1:44455345-44455364 | Msa0549350:three_prime_UTR | 35.0% | |
| TACAACGTAAACAAGCTCAC+CGG | - | chr4_1:44452246-44452265 | None:intergenic | 40.0% | |
| ! | TTCAAATAACGGTTTGGGAG+TGG | - | chr4_1:44452282-44452301 | None:intergenic | 40.0% |
| GAAATTGTAACAAAGGTGGC+TGG | + | chr4_1:44452299-44452318 | Msa0549350:intron | 40.0% | |
| GACCTAAAAGGTTCATGAGA+AGG | + | chr4_1:44452791-44452810 | Msa0549350:intron | 40.0% | |
| AAGACAAGAGATGCTAGATC+AGG | + | chr4_1:44452868-44452887 | Msa0549350:intron | 40.0% | |
| AGACAAGAGATGCTAGATCA+GGG | + | chr4_1:44452869-44452888 | Msa0549350:intron | 40.0% | |
| ATGCTAGATCAGGGTGATAT+GGG | + | chr4_1:44452878-44452897 | Msa0549350:intron | 40.0% | |
| ! | AGGTTGATTATGGTTTGCAG+TGG | + | chr4_1:44452925-44452944 | Msa0549350:intron | 40.0% |
| ! | GAAGTCGTTATTTCGTCCAT+CGG | + | chr4_1:44452959-44452978 | Msa0549350:intron | 40.0% |
| ! | CCACATTTTACGAGATCCAA+TGG | - | chr4_1:44453044-44453063 | None:intergenic | 40.0% |
| CCATTGGATCTCGTAAAATG+TGG | + | chr4_1:44453041-44453060 | Msa0549350:intron | 40.0% | |
| GAGATCTTGAGCTAAGAGAT+TGG | - | chr4_1:44453382-44453401 | None:intergenic | 40.0% | |
| TCAATGTCTTTCGTGTGTGT+TGG | + | chr4_1:44453669-44453688 | Msa0549350:intron | 40.0% | |
| GATGCATTAGCAAACAATGG+GGG | + | chr4_1:44453792-44453811 | Msa0549350:intron | 40.0% | |
| TACTATCCTTATCTCAACGC+GGG | - | chr4_1:44453873-44453892 | None:intergenic | 40.0% | |
| GTACTATCCTTATCTCAACG+CGG | - | chr4_1:44453874-44453893 | None:intergenic | 40.0% | |
| !! | AGCGTGCCGATTGTAATATT+TGG | + | chr4_1:44453954-44453973 | Msa0549350:intron | 40.0% |
| !! | GCGTGCCGATTGTAATATTT+GGG | + | chr4_1:44453955-44453974 | Msa0549350:intron | 40.0% |
| !! | CGTGCCGATTGTAATATTTG+GGG | + | chr4_1:44453956-44453975 | Msa0549350:intron | 40.0% |
| TGTAATATTTGGGGAGGAAG+AGG | + | chr4_1:44453965-44453984 | Msa0549350:intron | 40.0% | |
| ATCGCAGCGAAGACAAAAAA+TGG | + | chr4_1:44453990-44454009 | Msa0549350:intron | 40.0% | |
| GTGCAAGTACTTTCAACTCT+AGG | + | chr4_1:44454663-44454682 | Msa0549350:intron | 40.0% | |
| AGTACTTTCAACTCTAGGTG+AGG | + | chr4_1:44454668-44454687 | Msa0549350:intron | 40.0% | |
| GTTATAGGTCGGAACCTTAA+AGG | + | chr4_1:44454729-44454748 | Msa0549350:intron | 40.0% | |
| !! | GTGAAGATCAAGTGTTGCTT+TGG | + | chr4_1:44455130-44455149 | Msa0549350:three_prime_UTR | 40.0% |
| TCATAATGAGAGTCGTAAGC+TGG | - | chr4_1:44455205-44455224 | None:intergenic | 40.0% | |
| ! | GCCCTTCTCATGAACCTTTT+AGG | - | chr4_1:44452796-44452815 | None:intergenic | 45.0% |
| GATGCTAGATCAGGGTGATA+TGG | + | chr4_1:44452877-44452896 | Msa0549350:intron | 45.0% | |
| TGCTAGATCAGGGTGATATG+GGG | + | chr4_1:44452879-44452898 | Msa0549350:intron | 45.0% | |
| TTTCGTCCATCGGATACGTT+TGG | + | chr4_1:44452969-44452988 | Msa0549350:intron | 45.0% | |
| !! | AGAGATTGGTCTGGTCCAAT+TGG | - | chr4_1:44453368-44453387 | None:intergenic | 45.0% |
| ! | CTTGAGCTAAGAGATTGGTC+TGG | - | chr4_1:44453377-44453396 | None:intergenic | 45.0% |
| ATGTCTTTCGTGTGTGTTGG+TGG | + | chr4_1:44453672-44453691 | Msa0549350:intron | 45.0% | |
| ACTCTTAAACCGGCCCAATA+CGG | + | chr4_1:44453837-44453856 | Msa0549350:intron | 45.0% | |
| ! | TTTTTCCTTCCGTATTGGGC+CGG | - | chr4_1:44453849-44453868 | None:intergenic | 45.0% |
| !! | GGGCTTTTTCCTTCCGTATT+GGG | - | chr4_1:44453853-44453872 | None:intergenic | 45.0% |
| AAAAAGCCCGCGTTGAGATA+AGG | + | chr4_1:44453864-44453883 | Msa0549350:intron | 45.0% | |
| GCCGATTGTAATATTTGGGG+AGG | + | chr4_1:44453959-44453978 | Msa0549350:intron | 45.0% | |
| TGTAACAAAGGTGGCTGGAG+TGG | + | chr4_1:44452304-44452323 | Msa0549350:intron | 50.0% | |
| GTAACAAAGGTGGCTGGAGT+GGG | + | chr4_1:44452305-44452324 | Msa0549350:intron | 50.0% | |
| GCTAGATCAGGGTGATATGG+GGG | + | chr4_1:44452880-44452899 | Msa0549350:intron | 50.0% | |
| CTAGATCAGGGTGATATGGG+GGG | + | chr4_1:44452881-44452900 | Msa0549350:intron | 50.0% | |
| ! | TCTTTCGTGTGTGTTGGTGG+TGG | + | chr4_1:44453675-44453694 | Msa0549350:intron | 50.0% |
| !! | CTTTCGTGTGTGTTGGTGGT+GGG | + | chr4_1:44453676-44453695 | Msa0549350:intron | 50.0% |
| TTAAACCGGCCCAATACGGA+AGG | + | chr4_1:44453841-44453860 | Msa0549350:intron | 50.0% | |
| !! | CGGGCTTTTTCCTTCCGTAT+TGG | - | chr4_1:44453854-44453873 | None:intergenic | 50.0% |
| ATTACAATCGGCACGCTCGA+AGG | - | chr4_1:44453951-44453970 | None:intergenic | 50.0% | |
| TTGAAGCAATCACTTCCCCC+AGG | + | chr4_1:44454581-44454600 | Msa0549350:CDS | 50.0% | |
| AGGACTTCCTCCTCACTGCT+AGG | + | chr4_1:44454441-44454460 | Msa0549350:CDS | 55.0% | |
| ACTTCCTCCTCACTGCTAGG+AGG | + | chr4_1:44454444-44454463 | Msa0549350:CDS | 55.0% | |
| CATCCTTCCTCCTAGCAGTG+AGG | - | chr4_1:44454454-44454473 | None:intergenic | 55.0% | |
| GACGACAACGACGTCGCAGT+CGG | - | chr4_1:44452209-44452228 | None:intergenic | 60.0% | |
| CCTTCCTCCTAGCAGTGAGG+AGG | - | chr4_1:44454451-44454470 | None:intergenic | 60.0% | |
| CCTCCTCACTGCTAGGAGGA+AGG | + | chr4_1:44454448-44454467 | Msa0549350:CDS | 60.0% | |
| !! | CGTGTGTGTTGGTGGTGGGC+TGG | + | chr4_1:44453680-44453699 | Msa0549350:intron | 65.0% |
| !! | GTGTGTTGGTGGTGGGCTGG+TGG | + | chr4_1:44453683-44453702 | Msa0549350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 44452194 | 44455416 | 44452194 | ID=Msa0549350;Name=Msa0549350 |
| chr4_1 | mRNA | 44452194 | 44455416 | 44452194 | ID=Msa0549350-mRNA-1;Parent=Msa0549350;Name=Msa0549350-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.5|0.66|0.66|1|1|3|312|108 |
| chr4_1 | exon | 44452194 | 44452313 | 44452194 | ID=Msa0549350-mRNA-1:exon:11542;Parent=Msa0549350-mRNA-1 |
| chr4_1 | exon | 44454419 | 44454602 | 44454419 | ID=Msa0549350-mRNA-1:exon:11543;Parent=Msa0549350-mRNA-1 |
| chr4_1 | exon | 44455082 | 44455416 | 44455082 | ID=Msa0549350-mRNA-1:exon:11544;Parent=Msa0549350-mRNA-1 |
| chr4_1 | CDS | 44452194 | 44452313 | 44452194 | ID=Msa0549350-mRNA-1:cds;Parent=Msa0549350-mRNA-1 |
| chr4_1 | CDS | 44454419 | 44454602 | 44454419 | ID=Msa0549350-mRNA-1:cds;Parent=Msa0549350-mRNA-1 |
| chr4_1 | CDS | 44455082 | 44455104 | 44455082 | ID=Msa0549350-mRNA-1:cds;Parent=Msa0549350-mRNA-1 |
| chr4_1 | three_prime_UTR | 44455105 | 44455416 | 44455105 | ID=Msa0549350-mRNA-1:three_prime_utr;Parent=Msa0549350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
