Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295170 | XP_003629390.1 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 1.04e-113 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295170 | sp|P17093|RS11_SOYBN | 95.000 | 160 | 7 | 1 | 1 | 160 | 1 | 159 | 4.28e-99 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295170 | B7FGL2 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 4.97e-114 | 329 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1295170 | 0.830022 | 3.709764e-55 | -8.615850e-47 |
| Msa0002790 | Msa1295170 | 0.806209 | 9.194291e-50 | -8.615850e-47 |
| Msa0003780 | Msa1295170 | 0.806729 | 7.141845e-50 | -8.615850e-47 |
| Msa0032780 | Msa1295170 | 0.801317 | 9.533172e-49 | -8.615850e-47 |
| Msa0074030 | Msa1295170 | 0.803153 | 3.993037e-49 | -8.615850e-47 |
| Msa0085780 | Msa1295170 | 0.805603 | 1.232738e-49 | -8.615850e-47 |
| Msa0087910 | Msa1295170 | 0.856096 | 4.053493e-62 | -8.615850e-47 |
| Msa0653060 | Msa1295170 | 0.801328 | 9.482365e-49 | -8.615850e-47 |
| Msa0685460 | Msa1295170 | 0.850557 | 1.572652e-60 | -8.615850e-47 |
| Msa0685470 | Msa1295170 | 0.839889 | 1.209425e-57 | -8.615850e-47 |
| Msa0712610 | Msa1295170 | 0.809753 | 1.619375e-50 | -8.615850e-47 |
| Msa0789930 | Msa1295170 | 0.800323 | 1.520931e-48 | -8.615850e-47 |
| Msa0122290 | Msa1295170 | 0.800768 | 1.234486e-48 | -8.615850e-47 |
| Msa0134580 | Msa1295170 | 0.810277 | 1.248860e-50 | -8.615850e-47 |
| Msa0146340 | Msa1295170 | 0.831735 | 1.410178e-55 | -8.615850e-47 |
| Msa0174580 | Msa1295170 | 0.804253 | 2.360985e-49 | -8.615850e-47 |
| Msa0184650 | Msa1295170 | 0.860731 | 1.684132e-63 | -8.615850e-47 |
| Msa0194940 | Msa1295170 | 0.834288 | 3.268210e-56 | -8.615850e-47 |
| Msa0210330 | Msa1295170 | 0.824440 | 8.062153e-54 | -8.615850e-47 |
| Msa0210360 | Msa1295170 | 0.854474 | 1.202093e-61 | -8.615850e-47 |
| Msa0222730 | Msa1295170 | 0.877697 | 5.105709e-69 | -8.615850e-47 |
| Msa1295150 | Msa1295170 | 0.978613 | 3.411124e-146 | -8.615850e-47 |
| Msa1295170 | Msa1311400 | 0.848118 | 7.512018e-60 | -8.615850e-47 |
| Msa1295170 | Msa1338190 | 0.808906 | 2.459686e-50 | -8.615850e-47 |
| Msa1295170 | Msa1356790 | 0.811651 | 6.293938e-51 | -8.615850e-47 |
| Msa1295170 | Msa1362210 | 0.833990 | 3.882467e-56 | -8.615850e-47 |
| Msa1295170 | Msa1368920 | 0.808366 | 3.208450e-50 | -8.615850e-47 |
| Msa1295170 | Msa1407070 | 0.831608 | 1.515769e-55 | -8.615850e-47 |
| Msa1295170 | Msa1426120 | 0.804591 | 2.006696e-49 | -8.615850e-47 |
| Msa1295170 | Msa1463570 | 0.804620 | 1.978964e-49 | -8.615850e-47 |
| Msa0481520 | Msa1295170 | 0.801914 | 7.191273e-49 | -8.615850e-47 |
| Msa0481850 | Msa1295170 | 0.871807 | 5.155483e-67 | -8.615850e-47 |
| Msa1037290 | Msa1295170 | 0.810845 | 9.414340e-51 | -8.615850e-47 |
| Msa1078870 | Msa1295170 | 0.811212 | 7.836296e-51 | -8.615850e-47 |
| Msa1079920 | Msa1295170 | 0.859432 | 4.153243e-63 | -8.615850e-47 |
| Msa1080350 | Msa1295170 | 0.864578 | 1.099258e-64 | -8.615850e-47 |
| Msa1081340 | Msa1295170 | 0.815893 | 7.321644e-52 | -8.615850e-47 |
| Msa0250820 | Msa1295170 | 0.866755 | 2.261162e-65 | -8.615850e-47 |
| Msa0250870 | Msa1295170 | 0.856322 | 3.478486e-62 | -8.615850e-47 |
| Msa0264010 | Msa1295170 | 0.875543 | 2.836529e-68 | -8.615850e-47 |
| Msa0312210 | Msa1295170 | 0.803275 | 3.767194e-49 | -8.615850e-47 |
| Msa0327330 | Msa1295170 | 0.828070 | 1.102599e-54 | -8.615850e-47 |
| Msa0341880 | Msa1295170 | 0.803804 | 2.926372e-49 | -8.615850e-47 |
| Msa0342850 | Msa1295170 | 0.842951 | 1.889673e-58 | -8.615850e-47 |
| Msa1124850 | Msa1295170 | 0.903351 | 3.796747e-79 | -8.615850e-47 |
| Msa1125860 | Msa1295170 | 0.863363 | 2.626637e-64 | -8.615850e-47 |
| Msa1126060 | Msa1295170 | 0.862773 | 3.995364e-64 | -8.615850e-47 |
| Msa1128120 | Msa1295170 | 0.858574 | 7.501876e-63 | -8.615850e-47 |
| Msa1164150 | Msa1295170 | 0.811648 | 6.301882e-51 | -8.615850e-47 |
| Msa1165580 | Msa1295170 | 0.801329 | 9.476736e-49 | -8.615850e-47 |
| Msa1167540 | Msa1295170 | 0.849128 | 3.943504e-60 | -8.615850e-47 |
| Msa1169180 | Msa1295170 | 0.802222 | 6.213832e-49 | -8.615850e-47 |
| Msa1208330 | Msa1295170 | 0.812683 | 3.746619e-51 | -8.615850e-47 |
| Msa1215820 | Msa1295170 | 0.833748 | 4.463609e-56 | -8.615850e-47 |
| Msa0483110 | Msa1295170 | 0.822663 | 2.099529e-53 | -8.615850e-47 |
| Msa0529900 | Msa1295170 | 0.844159 | 8.986488e-59 | -8.615850e-47 |
| Msa0549350 | Msa1295170 | 0.808604 | 2.854257e-50 | -8.615850e-47 |
| Msa0848240 | Msa1295170 | 0.806517 | 7.915485e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295170 | MtrunA17_Chr8g0372611 | 100.000 | 160 | 0 | 0 | 1 | 160 | 1 | 160 | 9.58e-118 | 329 |
| Msa1295170 | MtrunA17_Chr4g0065131 | 97.500 | 160 | 4 | 0 | 1 | 160 | 1 | 160 | 5.33e-115 | 322 |
| Msa1295170 | MtrunA17_Chr1g0152301 | 93.168 | 161 | 10 | 1 | 1 | 160 | 1 | 161 | 1.93e-99 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295170 | AT3G48930.1 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 6.92e-98 | 279 |
| Msa1295170 | AT5G23740.1 | 90.000 | 160 | 15 | 1 | 1 | 160 | 1 | 159 | 5.20e-96 | 274 |
| Msa1295170 | AT4G30800.1 | 90.625 | 160 | 14 | 1 | 1 | 160 | 1 | 159 | 4.37e-94 | 270 |
Find 63 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAAGTTCTGATCAATTT+TGG | 0.204991 | 8_3:-53199803 | Msa1295170:three_prime_UTR |
| ATTACCTTCAGTGGCTTCTC+TGG | 0.248135 | 8_3:+53201373 | None:intergenic |
| GAAAAGGTGGAAACCGCTTC+TGG | 0.285560 | 8_3:-53201424 | Msa1295170:CDS |
| CTCACCTTGCTTCCGTGTTA+AGG | 0.347416 | 8_3:-53200144 | Msa1295170:CDS |
| TGTTACAGTTCGAAGAAATC+TGG | 0.351234 | 8_3:-53201464 | Msa1295170:intron |
| AGCAACCCAAAGTGTTTCTA+TGG | 0.356385 | 8_3:-53201567 | Msa1295170:intron |
| TTCTGGAAATCAGTTGGTCT+TGG | 0.368191 | 8_3:-53201407 | Msa1295170:CDS |
| TTTAGCACTATGGCAAGTTC+CGG | 0.400466 | 8_3:+53200360 | None:intergenic |
| TTACCTTCAGTGGCTTCTCT+GGG | 0.406115 | 8_3:+53201374 | None:intergenic |
| AATATACCATAGAAACACTT+TGG | 0.427654 | 8_3:+53201561 | None:intergenic |
| TTGAAGTTATGTACTGTGAT+TGG | 0.428216 | 8_3:-53199773 | Msa1295170:three_prime_UTR |
| ACCCCGGATGGAAACATTGC+CGG | 0.435918 | 8_3:+53200393 | None:intergenic |
| GAAGGAGATCATGTTATTAT+CGG | 0.436388 | 8_3:-53200122 | Msa1295170:CDS |
| CTTGGGACACAATGTTATGA+TGG | 0.439614 | 8_3:-53199724 | Msa1295170:three_prime_UTR |
| ATGGAAACATTGCCGGTGAA+TGG | 0.446336 | 8_3:+53200400 | None:intergenic |
| TCACCGGCAATGTTTCCATC+CGG | 0.450663 | 8_3:-53200396 | Msa1295170:CDS |
| ATATACCATAGAAACACTTT+GGG | 0.455860 | 8_3:+53201562 | None:intergenic |
| TCTGGAAAGGGGAAGAGGCC+TGG | 0.459223 | 8_3:-53201446 | Msa1295170:CDS |
| CACCGGCAATGTTTCCATCC+GGG | 0.463421 | 8_3:-53200395 | Msa1295170:CDS |
| CACATTGAACCTCACAGTCT+TGG | 0.470441 | 8_3:+53199956 | None:intergenic |
| AGTTCGAAGAAATCTGGAAA+GGG | 0.475713 | 8_3:-53201458 | Msa1295170:CDS |
| TGGACACTTCTTGTCAATGT+AGG | 0.485606 | 8_3:+53200420 | None:intergenic |
| TGAATAGAACTATTATTGTC+AGG | 0.489336 | 8_3:-53200336 | Msa1295170:CDS |
| GGCTAAGATACGACCCCGGA+TGG | 0.500286 | 8_3:+53200381 | None:intergenic |
| TCTGAGTGAGCGAGAGAAGA+AGG | 0.501010 | 8_3:-53201761 | Msa1295170:five_prime_UTR |
| GCTGGATCATCTAGTGGTGC+AGG | 0.501738 | 8_3:-53199918 | Msa1295170:CDS |
| AAGTAATTCTGATTTCTGTA+TGG | 0.502142 | 8_3:-53199824 | Msa1295170:three_prime_UTR |
| AAGGGGAAGAGGCCTGGAAA+AGG | 0.502986 | 8_3:-53201440 | Msa1295170:CDS |
| ATCTAGTGGTGCAGGAAAGA+AGG | 0.504250 | 8_3:-53199910 | Msa1295170:CDS |
| ACCTTCAGTGGCTTCTCTGG+GGG | 0.522306 | 8_3:+53201376 | None:intergenic |
| TACTTGTTCAGCCATGGTGA+TGG | 0.529963 | 8_3:+53201698 | None:intergenic |
| ACCGGCAATGTTTCCATCCG+GGG | 0.533333 | 8_3:-53200394 | Msa1295170:CDS |
| GACAAGAAGTGTCCATTCAC+CGG | 0.534170 | 8_3:-53200412 | Msa1295170:CDS |
| GCACCACTAGATGATCCAGC+TGG | 0.537223 | 8_3:+53199921 | None:intergenic |
| TTCTTTGTTACAGACTGAGA+AGG | 0.537706 | 8_3:-53201599 | Msa1295170:intron |
| GGGAAGAGGCCTGGAAAAGG+TGG | 0.539251 | 8_3:-53201437 | Msa1295170:CDS |
| CCTTGCTTCCGTGTTAAGGA+AGG | 0.545045 | 8_3:-53200140 | Msa1295170:CDS |
| GTGATTGACATTACCTTCAG+TGG | 0.547077 | 8_3:+53201364 | None:intergenic |
| ATCCGGGGTCGTATCTTAGC+CGG | 0.548552 | 8_3:-53200379 | Msa1295170:CDS |
| AGAAATCTGGAAAGGGGAAG+AGG | 0.548779 | 8_3:-53201451 | Msa1295170:CDS |
| TACCTTCAGTGGCTTCTCTG+GGG | 0.550510 | 8_3:+53201375 | None:intergenic |
| AACCGCTTCTGGAAATCAGT+TGG | 0.551981 | 8_3:-53201413 | Msa1295170:CDS |
| GACCAACTGATTTCCAGAAG+CGG | 0.558273 | 8_3:+53201411 | None:intergenic |
| AAGCAAGGTGAGACATGAGC+TGG | 0.562393 | 8_3:+53200155 | None:intergenic |
| GGAAGTTACTTGTTCAGCCA+TGG | 0.570737 | 8_3:+53201692 | None:intergenic |
| CAGTTCGAAGAAATCTGGAA+AGG | 0.573205 | 8_3:-53201459 | Msa1295170:CDS |
| ATGTTATTATCGGACAATGC+AGG | 0.580248 | 8_3:-53200112 | Msa1295170:intron |
| CTCTATTTAGGTATGAGAAG+AGG | 0.586961 | 8_3:-53200190 | Msa1295170:intron |
| GTGTTGAAAGTGATCCCAGC+TGG | 0.594686 | 8_3:-53199936 | Msa1295170:CDS |
| AACCTCACAGTCTTGGAGAG+TGG | 0.603168 | 8_3:+53199963 | None:intergenic |
| AGTGAGCGAGAGAAGAAGGT+AGG | 0.608997 | 8_3:-53201757 | Msa1295170:five_prime_UTR |
| CCATGGTGATGGAGTTGCAG+AGG | 0.616042 | 8_3:+53201709 | None:intergenic |
| CCTTCCTTAACACGGAAGCA+AGG | 0.616216 | 8_3:+53200140 | None:intergenic |
| GTTCGAAGAAATCTGGAAAG+GGG | 0.616547 | 8_3:-53201457 | Msa1295170:CDS |
| ACTTTATTAAGAAGTATCAG+AGG | 0.622717 | 8_3:-53200300 | Msa1295170:intron |
| CACCACTAGATGATCCAGCT+GGG | 0.624692 | 8_3:+53199922 | None:intergenic |
| CATGATCTCCTTCCTTAACA+CGG | 0.626861 | 8_3:+53200132 | None:intergenic |
| CCTCTGCAACTCCATCACCA+TGG | 0.645543 | 8_3:-53201709 | Msa1295170:exon |
| ATCCCAGCTGGATCATCTAG+TGG | 0.646748 | 8_3:-53199924 | Msa1295170:CDS |
| AGGTAGGTTTCAAGTTCGTG+CGG | 0.650287 | 8_3:-53201741 | Msa1295170:five_prime_UTR |
| GGCCACTCTCCAAGACTGTG+AGG | 0.661246 | 8_3:-53199965 | Msa1295170:CDS |
| ATAGAACTATTATTGTCAGG+AGG | 0.690212 | 8_3:-53200333 | Msa1295170:CDS |
| TTCCGGCTAAGATACGACCC+CGG | 0.732863 | 8_3:+53200377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTTTTTATAATAC+AGG | - | chr8_3:53201027-53201046 | Msa1295170:intron | 10.0% |
| !!! | CATTTTTTTTTTTATAATAC+AGG | - | chr8_3:53201027-53201046 | Msa1295170:intron | 10.0% |
| !!! | TCTCTGTTTTTTTTTTTTTT+TGG | - | chr8_3:53199825-53199844 | Msa1295170:three_prime_UTR | 15.0% |
| !! | GAAATTGTAAAATAAATGAA+TGG | + | chr8_3:53199856-53199875 | None:intergenic | 15.0% |
| !! | GTAAAAAAAAAACAGAAATT+GGG | + | chr8_3:53199944-53199963 | None:intergenic | 15.0% |
| !! | AGTAAAAAAAAAACAGAAAT+TGG | + | chr8_3:53199945-53199964 | None:intergenic | 15.0% |
| !! | TCTATGATTATATGATAAAT+TGG | - | chr8_3:53200570-53200589 | Msa1295170:intron | 15.0% |
| !! | TGTTTGTAAATAAATAATAG+TGG | - | chr8_3:53200625-53200644 | Msa1295170:intron | 15.0% |
| !!! | TCTCTGTTTTTTTTTTTTTT+TGG | - | chr8_3:53199825-53199844 | Msa1295170:three_prime_UTR | 15.0% |
| !! | GAAATTGTAAAATAAATGAA+TGG | + | chr8_3:53199856-53199875 | None:intergenic | 15.0% |
| !! | GTAAAAAAAAAACAGAAATT+GGG | + | chr8_3:53199944-53199963 | None:intergenic | 15.0% |
| !! | AGTAAAAAAAAAACAGAAAT+TGG | + | chr8_3:53199945-53199964 | None:intergenic | 15.0% |
| !! | TCTATGATTATATGATAAAT+TGG | - | chr8_3:53200570-53200589 | Msa1295170:intron | 15.0% |
| !! | TGTTTGTAAATAAATAATAG+TGG | - | chr8_3:53200625-53200644 | Msa1295170:intron | 15.0% |
| !!! | TAGTAACAGTGTTTAATTTT+AGG | - | chr8_3:53200139-53200158 | Msa1295170:CDS | 20.0% |
| !!! | AGTAACAGTGTTTAATTTTA+GGG | - | chr8_3:53200140-53200159 | Msa1295170:CDS | 20.0% |
| !!! | TTATGTTCTAAACTTACATA+TGG | - | chr8_3:53200174-53200193 | Msa1295170:CDS | 20.0% |
| !!! | TATGTTCTAAACTTACATAT+GGG | - | chr8_3:53200175-53200194 | Msa1295170:CDS | 20.0% |
| !!! | CAAAGACTACATTTTTTTTT+AGG | + | chr8_3:53200346-53200365 | None:intergenic | 20.0% |
| !! | CTAAAAAAAAATGTAGTCTT+TGG | - | chr8_3:53200344-53200363 | Msa1295170:CDS | 20.0% |
| !!! | ATTTATGTATGTTTTGATAC+TGG | - | chr8_3:53200456-53200475 | Msa1295170:intron | 20.0% |
| !! | TATTTATTTACAAACACAAC+AGG | + | chr8_3:53200621-53200640 | None:intergenic | 20.0% |
| !! | GCAATACTTATTCTAATTAT+TGG | - | chr8_3:53200669-53200688 | Msa1295170:intron | 20.0% |
| !! | GAGAAGTAACAAAAAAAAAA+GGG | + | chr8_3:53201265-53201284 | None:intergenic | 20.0% |
| !! | AGAGAAGTAACAAAAAAAAA+AGG | + | chr8_3:53201266-53201285 | None:intergenic | 20.0% |
| !!! | TTTTTGTTACTTCTCTATTT+AGG | - | chr8_3:53201270-53201289 | Msa1295170:intron | 20.0% |
| !!! | TTCGTTATTATGTTTTTTCT+TGG | - | chr8_3:53201730-53201749 | Msa1295170:five_prime_UTR | 20.0% |
| !!! | TCGTTATTATGTTTTTTCTT+GGG | - | chr8_3:53201731-53201750 | Msa1295170:five_prime_UTR | 20.0% |
| !!! | TAGTAACAGTGTTTAATTTT+AGG | - | chr8_3:53200139-53200158 | Msa1295170:CDS | 20.0% |
| !!! | AGTAACAGTGTTTAATTTTA+GGG | - | chr8_3:53200140-53200159 | Msa1295170:CDS | 20.0% |
| !!! | TTATGTTCTAAACTTACATA+TGG | - | chr8_3:53200174-53200193 | Msa1295170:CDS | 20.0% |
| !!! | TATGTTCTAAACTTACATAT+GGG | - | chr8_3:53200175-53200194 | Msa1295170:CDS | 20.0% |
| !!! | CAAAGACTACATTTTTTTTT+AGG | + | chr8_3:53200346-53200365 | None:intergenic | 20.0% |
| !! | CTAAAAAAAAATGTAGTCTT+TGG | - | chr8_3:53200344-53200363 | Msa1295170:CDS | 20.0% |
| !!! | ATTTATGTATGTTTTGATAC+TGG | - | chr8_3:53200456-53200475 | Msa1295170:intron | 20.0% |
| !! | TATTTATTTACAAACACAAC+AGG | + | chr8_3:53200621-53200640 | None:intergenic | 20.0% |
| !! | GCAATACTTATTCTAATTAT+TGG | - | chr8_3:53200669-53200688 | Msa1295170:intron | 20.0% |
| !! | GAGAAGTAACAAAAAAAAAA+GGG | + | chr8_3:53201265-53201284 | None:intergenic | 20.0% |
| !! | AGAGAAGTAACAAAAAAAAA+AGG | + | chr8_3:53201266-53201285 | None:intergenic | 20.0% |
| !!! | TTTTTGTTACTTCTCTATTT+AGG | - | chr8_3:53201270-53201289 | Msa1295170:intron | 20.0% |
| !!! | TTCGTTATTATGTTTTTTCT+TGG | - | chr8_3:53201730-53201749 | Msa1295170:five_prime_UTR | 20.0% |
| !!! | TCGTTATTATGTTTTTTCTT+GGG | - | chr8_3:53201731-53201750 | Msa1295170:five_prime_UTR | 20.0% |
| ! | ATATACCATAGAAACACTTT+GGG | + | chr8_3:53199913-53199932 | None:intergenic | 25.0% |
| ! | AATATACCATAGAAACACTT+TGG | + | chr8_3:53199914-53199933 | None:intergenic | 25.0% |
| !! | ATGTTCTAAACTTACATATG+GGG | - | chr8_3:53200176-53200195 | Msa1295170:CDS | 25.0% |
| ! | AACTAAAACAAATACACTCA+AGG | + | chr8_3:53200238-53200257 | None:intergenic | 25.0% |
| !!! | ATTTTAGTCCTCAAATGTAT+TGG | - | chr8_3:53200262-53200281 | Msa1295170:intron | 25.0% |
| !! | GTATTGAGACATGTAATTTT+TGG | - | chr8_3:53200752-53200771 | Msa1295170:intron | 25.0% |
| !!! | AGACATGTAATTTTTGGTTA+TGG | - | chr8_3:53200758-53200777 | Msa1295170:intron | 25.0% |
| ! | GGTTATGTTATGTTATGTTA+CGG | - | chr8_3:53200779-53200798 | Msa1295170:intron | 25.0% |
| ! | AATTTCACTTTCAAAGTAAC+TGG | + | chr8_3:53200925-53200944 | None:intergenic | 25.0% |
| !! | ATTGTTAATAGCTCTATGTA+TGG | - | chr8_3:53200966-53200985 | Msa1295170:intron | 25.0% |
| !!! | TTCTGTTTCTAATACAGAAA+TGG | - | chr8_3:53201004-53201023 | Msa1295170:intron | 25.0% |
| !!! | TTCTATTCATTTTAGCACTA+TGG | + | chr8_3:53201125-53201144 | None:intergenic | 25.0% |
| ! | TGAATAGAACTATTATTGTC+AGG | - | chr8_3:53201136-53201155 | Msa1295170:intron | 25.0% |
| !!! | ACTTTATTAAGAAGTATCAG+AGG | - | chr8_3:53201172-53201191 | Msa1295170:intron | 25.0% |
| ! | AAGTGTGCAAATAAAAAATG+GGG | + | chr8_3:53201223-53201242 | None:intergenic | 25.0% |
| ! | CAAGTGTGCAAATAAAAAAT+GGG | + | chr8_3:53201224-53201243 | None:intergenic | 25.0% |
| ! | AAGTAATTCTGATTTCTGTA+TGG | - | chr8_3:53201648-53201667 | Msa1295170:intron | 25.0% |
| ! | ATATACCATAGAAACACTTT+GGG | + | chr8_3:53199913-53199932 | None:intergenic | 25.0% |
| ! | AATATACCATAGAAACACTT+TGG | + | chr8_3:53199914-53199933 | None:intergenic | 25.0% |
| !! | ATGTTCTAAACTTACATATG+GGG | - | chr8_3:53200176-53200195 | Msa1295170:CDS | 25.0% |
| ! | AACTAAAACAAATACACTCA+AGG | + | chr8_3:53200238-53200257 | None:intergenic | 25.0% |
| !!! | ATTTTAGTCCTCAAATGTAT+TGG | - | chr8_3:53200262-53200281 | Msa1295170:intron | 25.0% |
| !! | GTATTGAGACATGTAATTTT+TGG | - | chr8_3:53200752-53200771 | Msa1295170:intron | 25.0% |
| !!! | AGACATGTAATTTTTGGTTA+TGG | - | chr8_3:53200758-53200777 | Msa1295170:intron | 25.0% |
| ! | GGTTATGTTATGTTATGTTA+CGG | - | chr8_3:53200779-53200798 | Msa1295170:intron | 25.0% |
| ! | AATTTCACTTTCAAAGTAAC+TGG | + | chr8_3:53200925-53200944 | None:intergenic | 25.0% |
| !! | ATTGTTAATAGCTCTATGTA+TGG | - | chr8_3:53200966-53200985 | Msa1295170:intron | 25.0% |
| !!! | TTCTGTTTCTAATACAGAAA+TGG | - | chr8_3:53201004-53201023 | Msa1295170:intron | 25.0% |
| !!! | TTCTATTCATTTTAGCACTA+TGG | + | chr8_3:53201125-53201144 | None:intergenic | 25.0% |
| ! | TGAATAGAACTATTATTGTC+AGG | - | chr8_3:53201136-53201155 | Msa1295170:intron | 25.0% |
| !!! | ACTTTATTAAGAAGTATCAG+AGG | - | chr8_3:53201172-53201191 | Msa1295170:intron | 25.0% |
| ! | AAGTGTGCAAATAAAAAATG+GGG | + | chr8_3:53201223-53201242 | None:intergenic | 25.0% |
| ! | CAAGTGTGCAAATAAAAAAT+GGG | + | chr8_3:53201224-53201243 | None:intergenic | 25.0% |
| ! | AAGTAATTCTGATTTCTGTA+TGG | - | chr8_3:53201648-53201667 | Msa1295170:intron | 25.0% |
| AAAAAACAGAGATAGAACGA+AGG | + | chr8_3:53199817-53199836 | None:intergenic | 30.0% | |
| TCCTCAAATGTATTGGATTT+GGG | - | chr8_3:53200269-53200288 | Msa1295170:intron | 30.0% | |
| !! | ACACTATTTCTTTTGCATAG+TGG | - | chr8_3:53200413-53200432 | Msa1295170:CDS | 30.0% |
| TATAGACCAATTCTTTCAAG+CGG | + | chr8_3:53200808-53200827 | None:intergenic | 30.0% | |
| ACACTTGCAAGACATAATAT+AGG | + | chr8_3:53200852-53200871 | None:intergenic | 30.0% | |
| ! | AATAGCTCTATGTATGGTTA+CGG | - | chr8_3:53200972-53200991 | Msa1295170:intron | 30.0% |
| ATAGAACTATTATTGTCAGG+AGG | - | chr8_3:53201139-53201158 | Msa1295170:intron | 30.0% | |
| !! | TTAAGAAGTATCAGAGGTAT+TGG | - | chr8_3:53201178-53201197 | Msa1295170:intron | 30.0% |
| ! | ATTGGTTTCCTTTCATACTA+TGG | - | chr8_3:53201196-53201215 | Msa1295170:intron | 30.0% |
| CCAAGTGTGCAAATAAAAAA+TGG | + | chr8_3:53201225-53201244 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTATTTGCACACT+TGG | - | chr8_3:53201222-53201241 | Msa1295170:intron | 30.0% |
| GAAGGAGATCATGTTATTAT+CGG | - | chr8_3:53201350-53201369 | Msa1295170:intron | 30.0% | |
| TCCTACAGAAAGAAAAAGAA+AGG | + | chr8_3:53201405-53201424 | None:intergenic | 30.0% | |
| TAAAGAAGTGGCACAAATAA+AGG | + | chr8_3:53201487-53201506 | None:intergenic | 30.0% | |
| !! | TTTATTTGTGCCACTTCTTT+AGG | - | chr8_3:53201486-53201505 | Msa1295170:intron | 30.0% |
| TTGAAGTTATGTACTGTGAT+TGG | - | chr8_3:53201699-53201718 | Msa1295170:intron | 30.0% | |
| AAAAAACAGAGATAGAACGA+AGG | + | chr8_3:53199817-53199836 | None:intergenic | 30.0% | |
| TCCTCAAATGTATTGGATTT+GGG | - | chr8_3:53200269-53200288 | Msa1295170:intron | 30.0% | |
| !! | ACACTATTTCTTTTGCATAG+TGG | - | chr8_3:53200413-53200432 | Msa1295170:CDS | 30.0% |
| TATAGACCAATTCTTTCAAG+CGG | + | chr8_3:53200808-53200827 | None:intergenic | 30.0% | |
| ACACTTGCAAGACATAATAT+AGG | + | chr8_3:53200852-53200871 | None:intergenic | 30.0% | |
| ! | AATAGCTCTATGTATGGTTA+CGG | - | chr8_3:53200972-53200991 | Msa1295170:intron | 30.0% |
| ATAGAACTATTATTGTCAGG+AGG | - | chr8_3:53201139-53201158 | Msa1295170:intron | 30.0% | |
| !! | TTAAGAAGTATCAGAGGTAT+TGG | - | chr8_3:53201178-53201197 | Msa1295170:intron | 30.0% |
| ! | ATTGGTTTCCTTTCATACTA+TGG | - | chr8_3:53201196-53201215 | Msa1295170:intron | 30.0% |
| CCAAGTGTGCAAATAAAAAA+TGG | + | chr8_3:53201225-53201244 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTATTTGCACACT+TGG | - | chr8_3:53201222-53201241 | Msa1295170:intron | 30.0% |
| GAAGGAGATCATGTTATTAT+CGG | - | chr8_3:53201350-53201369 | Msa1295170:intron | 30.0% | |
| TCCTACAGAAAGAAAAAGAA+AGG | + | chr8_3:53201405-53201424 | None:intergenic | 30.0% | |
| TAAAGAAGTGGCACAAATAA+AGG | + | chr8_3:53201487-53201506 | None:intergenic | 30.0% | |
| !! | TTTATTTGTGCCACTTCTTT+AGG | - | chr8_3:53201486-53201505 | Msa1295170:intron | 30.0% |
| TTGAAGTTATGTACTGTGAT+TGG | - | chr8_3:53201699-53201718 | Msa1295170:intron | 30.0% | |
| TTCTTTGTTACAGACTGAGA+AGG | - | chr8_3:53199873-53199892 | Msa1295170:three_prime_UTR | 35.0% | |
| TGTTACAGTTCGAAGAAATC+TGG | - | chr8_3:53200008-53200027 | Msa1295170:intron | 35.0% | |
| AGTTCGAAGAAATCTGGAAA+GGG | - | chr8_3:53200014-53200033 | Msa1295170:intron | 35.0% | |
| TGTTTATCCCTACATTCCTA+GGG | + | chr8_3:53200205-53200224 | None:intergenic | 35.0% | |
| ! | TGTAGGGATAAACAGCATTT+TGG | - | chr8_3:53200211-53200230 | Msa1295170:intron | 35.0% |
| GTCCTCAAATGTATTGGATT+TGG | - | chr8_3:53200268-53200287 | Msa1295170:intron | 35.0% | |
| CCTCAAATGTATTGGATTTG+GGG | - | chr8_3:53200270-53200289 | Msa1295170:intron | 35.0% | |
| CGAGATAAGGATAGAAACAT+TGG | - | chr8_3:53200374-53200393 | Msa1295170:CDS | 35.0% | |
| GGCTTATTTACAAACACAAC+AGG | + | chr8_3:53200600-53200619 | None:intergenic | 35.0% | |
| ! | TTATGTCTTGCAAGTGTTGT+TGG | - | chr8_3:53200855-53200874 | Msa1295170:intron | 35.0% |
| ! | TATGTCTTGCAAGTGTTGTT+GGG | - | chr8_3:53200856-53200875 | Msa1295170:intron | 35.0% |
| CTCTATTTAGGTATGAGAAG+AGG | - | chr8_3:53201282-53201301 | Msa1295170:intron | 35.0% | |
| ATGTTATTATCGGACAATGC+AGG | - | chr8_3:53201360-53201379 | Msa1295170:intron | 35.0% | |
| ! | GCCTTTCTTTTTCTTTCTGT+AGG | - | chr8_3:53201401-53201420 | Msa1295170:CDS | 35.0% |
| !! | GGTGAAGTTCTGATCAATTT+TGG | - | chr8_3:53201669-53201688 | Msa1295170:intron | 35.0% |
| TTCTTTGTTACAGACTGAGA+AGG | - | chr8_3:53199873-53199892 | Msa1295170:three_prime_UTR | 35.0% | |
| TGTTACAGTTCGAAGAAATC+TGG | - | chr8_3:53200008-53200027 | Msa1295170:intron | 35.0% | |
| AGTTCGAAGAAATCTGGAAA+GGG | - | chr8_3:53200014-53200033 | Msa1295170:intron | 35.0% | |
| TGTTTATCCCTACATTCCTA+GGG | + | chr8_3:53200205-53200224 | None:intergenic | 35.0% | |
| ! | TGTAGGGATAAACAGCATTT+TGG | - | chr8_3:53200211-53200230 | Msa1295170:intron | 35.0% |
| GTCCTCAAATGTATTGGATT+TGG | - | chr8_3:53200268-53200287 | Msa1295170:intron | 35.0% | |
| CCTCAAATGTATTGGATTTG+GGG | - | chr8_3:53200270-53200289 | Msa1295170:intron | 35.0% | |
| CGAGATAAGGATAGAAACAT+TGG | - | chr8_3:53200374-53200393 | Msa1295170:CDS | 35.0% | |
| GGCTTATTTACAAACACAAC+AGG | + | chr8_3:53200600-53200619 | None:intergenic | 35.0% | |
| ! | TTATGTCTTGCAAGTGTTGT+TGG | - | chr8_3:53200855-53200874 | Msa1295170:intron | 35.0% |
| ! | TATGTCTTGCAAGTGTTGTT+GGG | - | chr8_3:53200856-53200875 | Msa1295170:intron | 35.0% |
| CTCTATTTAGGTATGAGAAG+AGG | - | chr8_3:53201282-53201301 | Msa1295170:intron | 35.0% | |
| ATGTTATTATCGGACAATGC+AGG | - | chr8_3:53201360-53201379 | Msa1295170:intron | 35.0% | |
| ! | GCCTTTCTTTTTCTTTCTGT+AGG | - | chr8_3:53201401-53201420 | Msa1295170:CDS | 35.0% |
| !! | GGTGAAGTTCTGATCAATTT+TGG | - | chr8_3:53201669-53201688 | Msa1295170:intron | 35.0% |
| ! | AGCAACCCAAAGTGTTTCTA+TGG | - | chr8_3:53199905-53199924 | Msa1295170:CDS | 40.0% |
| CAGTTCGAAGAAATCTGGAA+AGG | - | chr8_3:53200013-53200032 | Msa1295170:intron | 40.0% | |
| GTTCGAAGAAATCTGGAAAG+GGG | - | chr8_3:53200015-53200034 | Msa1295170:intron | 40.0% | |
| ! | TTCTGGAAATCAGTTGGTCT+TGG | - | chr8_3:53200065-53200084 | Msa1295170:intron | 40.0% |
| GTGATTGACATTACCTTCAG+TGG | + | chr8_3:53200111-53200130 | None:intergenic | 40.0% | |
| CTGTTTATCCCTACATTCCT+AGG | + | chr8_3:53200206-53200225 | None:intergenic | 40.0% | |
| CCCCAAATCCAATACATTTG+AGG | + | chr8_3:53200273-53200292 | None:intergenic | 40.0% | |
| TAATAGAGCCTCACATTCGA+GGG | - | chr8_3:53200304-53200323 | Msa1295170:CDS | 40.0% | |
| !! | CTTTGGAATGAGACGAGATA+AGG | - | chr8_3:53200361-53200380 | Msa1295170:CDS | 40.0% |
| ! | TGTTTGTCTGAGATTCCTCT+TGG | - | chr8_3:53200504-53200523 | Msa1295170:intron | 40.0% |
| AGATTCCTCTTGGCAATATC+AGG | - | chr8_3:53200514-53200533 | Msa1295170:intron | 40.0% | |
| TGGACACTTCTTGTCAATGT+AGG | + | chr8_3:53201055-53201074 | None:intergenic | 40.0% | |
| TTTAGCACTATGGCAAGTTC+CGG | + | chr8_3:53201115-53201134 | None:intergenic | 40.0% | |
| AATGGGGACCATAGTATGAA+AGG | + | chr8_3:53201207-53201226 | None:intergenic | 40.0% | |
| CATGATCTCCTTCCTTAACA+CGG | + | chr8_3:53201343-53201362 | None:intergenic | 40.0% | |
| CAATGCAGGTGAGACTTTAT+AGG | - | chr8_3:53201374-53201393 | Msa1295170:intron | 40.0% | |
| CTTGGGACACAATGTTATGA+TGG | - | chr8_3:53201748-53201767 | Msa1295170:five_prime_UTR | 40.0% | |
| ! | AGCAACCCAAAGTGTTTCTA+TGG | - | chr8_3:53199905-53199924 | Msa1295170:CDS | 40.0% |
| CAGTTCGAAGAAATCTGGAA+AGG | - | chr8_3:53200013-53200032 | Msa1295170:intron | 40.0% | |
| GTTCGAAGAAATCTGGAAAG+GGG | - | chr8_3:53200015-53200034 | Msa1295170:intron | 40.0% | |
| ! | TTCTGGAAATCAGTTGGTCT+TGG | - | chr8_3:53200065-53200084 | Msa1295170:intron | 40.0% |
| GTGATTGACATTACCTTCAG+TGG | + | chr8_3:53200111-53200130 | None:intergenic | 40.0% | |
| CTGTTTATCCCTACATTCCT+AGG | + | chr8_3:53200206-53200225 | None:intergenic | 40.0% | |
| CCCCAAATCCAATACATTTG+AGG | + | chr8_3:53200273-53200292 | None:intergenic | 40.0% | |
| TAATAGAGCCTCACATTCGA+GGG | - | chr8_3:53200304-53200323 | Msa1295170:CDS | 40.0% | |
| !! | CTTTGGAATGAGACGAGATA+AGG | - | chr8_3:53200361-53200380 | Msa1295170:CDS | 40.0% |
| ! | TGTTTGTCTGAGATTCCTCT+TGG | - | chr8_3:53200504-53200523 | Msa1295170:intron | 40.0% |
| AGATTCCTCTTGGCAATATC+AGG | - | chr8_3:53200514-53200533 | Msa1295170:intron | 40.0% | |
| TGGACACTTCTTGTCAATGT+AGG | + | chr8_3:53201055-53201074 | None:intergenic | 40.0% | |
| TTTAGCACTATGGCAAGTTC+CGG | + | chr8_3:53201115-53201134 | None:intergenic | 40.0% | |
| AATGGGGACCATAGTATGAA+AGG | + | chr8_3:53201207-53201226 | None:intergenic | 40.0% | |
| CATGATCTCCTTCCTTAACA+CGG | + | chr8_3:53201343-53201362 | None:intergenic | 40.0% | |
| CAATGCAGGTGAGACTTTAT+AGG | - | chr8_3:53201374-53201393 | Msa1295170:intron | 40.0% | |
| CTTGGGACACAATGTTATGA+TGG | - | chr8_3:53201748-53201767 | Msa1295170:five_prime_UTR | 40.0% | |
| !! | AGGTAGGTTTCAAGTTCGTG+CGG | - | chr8_3:53199731-53199750 | Msa1295170:three_prime_UTR | 45.0% |
| TACTTGTTCAGCCATGGTGA+TGG | + | chr8_3:53199777-53199796 | None:intergenic | 45.0% | |
| GGAAGTTACTTGTTCAGCCA+TGG | + | chr8_3:53199783-53199802 | None:intergenic | 45.0% | |
| ! | AGAACGAAGGAGTGTGAAGA+AGG | + | chr8_3:53199804-53199823 | None:intergenic | 45.0% |
| AGAAATCTGGAAAGGGGAAG+AGG | - | chr8_3:53200021-53200040 | Msa1295170:intron | 45.0% | |
| ! | AACCGCTTCTGGAAATCAGT+TGG | - | chr8_3:53200059-53200078 | Msa1295170:intron | 45.0% |
| ! | GACCAACTGATTTCCAGAAG+CGG | + | chr8_3:53200064-53200083 | None:intergenic | 45.0% |
| TTACCTTCAGTGGCTTCTCT+GGG | + | chr8_3:53200101-53200120 | None:intergenic | 45.0% | |
| ATTACCTTCAGTGGCTTCTC+TGG | + | chr8_3:53200102-53200121 | None:intergenic | 45.0% | |
| ! | CTTACATATGGGGTATCCCT+AGG | - | chr8_3:53200186-53200205 | Msa1295170:intron | 45.0% |
| GTAATAGAGCCTCACATTCG+AGG | - | chr8_3:53200303-53200322 | Msa1295170:CDS | 45.0% | |
| !! | CTGAGCGTCTAGCTTTGTAT+TGG | - | chr8_3:53200479-53200498 | Msa1295170:intron | 45.0% |
| TTCCTCTTGGCAATATCAGG+TGG | - | chr8_3:53200517-53200536 | Msa1295170:intron | 45.0% | |
| CGGTATCCGCTTGAAAGAAT+TGG | - | chr8_3:53200799-53200818 | Msa1295170:intron | 45.0% | |
| ! | TCTTGCAAGTGTTGTTGGGA+AGG | - | chr8_3:53200860-53200879 | Msa1295170:intron | 45.0% |
| !! | GACAAGAAGTGTCCATTCAC+CGG | - | chr8_3:53201060-53201079 | Msa1295170:intron | 45.0% |
| ATGGAAACATTGCCGGTGAA+TGG | + | chr8_3:53201075-53201094 | None:intergenic | 45.0% | |
| CACATTGAACCTCACAGTCT+TGG | + | chr8_3:53201519-53201538 | None:intergenic | 45.0% | |
| ATCTAGTGGTGCAGGAAAGA+AGG | - | chr8_3:53201562-53201581 | Msa1295170:intron | 45.0% | |
| ! | GCAGGAAAGAAGGCTTTTAC+TGG | - | chr8_3:53201572-53201591 | Msa1295170:CDS | 45.0% |
| !! | AGGTAGGTTTCAAGTTCGTG+CGG | - | chr8_3:53199731-53199750 | Msa1295170:three_prime_UTR | 45.0% |
| TACTTGTTCAGCCATGGTGA+TGG | + | chr8_3:53199777-53199796 | None:intergenic | 45.0% | |
| GGAAGTTACTTGTTCAGCCA+TGG | + | chr8_3:53199783-53199802 | None:intergenic | 45.0% | |
| ! | AGAACGAAGGAGTGTGAAGA+AGG | + | chr8_3:53199804-53199823 | None:intergenic | 45.0% |
| AGAAATCTGGAAAGGGGAAG+AGG | - | chr8_3:53200021-53200040 | Msa1295170:intron | 45.0% | |
| ! | AACCGCTTCTGGAAATCAGT+TGG | - | chr8_3:53200059-53200078 | Msa1295170:intron | 45.0% |
| ! | GACCAACTGATTTCCAGAAG+CGG | + | chr8_3:53200064-53200083 | None:intergenic | 45.0% |
| TTACCTTCAGTGGCTTCTCT+GGG | + | chr8_3:53200101-53200120 | None:intergenic | 45.0% | |
| ATTACCTTCAGTGGCTTCTC+TGG | + | chr8_3:53200102-53200121 | None:intergenic | 45.0% | |
| ! | CTTACATATGGGGTATCCCT+AGG | - | chr8_3:53200186-53200205 | Msa1295170:intron | 45.0% |
| GTAATAGAGCCTCACATTCG+AGG | - | chr8_3:53200303-53200322 | Msa1295170:CDS | 45.0% | |
| !! | CTGAGCGTCTAGCTTTGTAT+TGG | - | chr8_3:53200479-53200498 | Msa1295170:intron | 45.0% |
| TTCCTCTTGGCAATATCAGG+TGG | - | chr8_3:53200517-53200536 | Msa1295170:intron | 45.0% | |
| CGGTATCCGCTTGAAAGAAT+TGG | - | chr8_3:53200799-53200818 | Msa1295170:intron | 45.0% | |
| ! | TCTTGCAAGTGTTGTTGGGA+AGG | - | chr8_3:53200860-53200879 | Msa1295170:intron | 45.0% |
| !! | GACAAGAAGTGTCCATTCAC+CGG | - | chr8_3:53201060-53201079 | Msa1295170:intron | 45.0% |
| ATGGAAACATTGCCGGTGAA+TGG | + | chr8_3:53201075-53201094 | None:intergenic | 45.0% | |
| CACATTGAACCTCACAGTCT+TGG | + | chr8_3:53201519-53201538 | None:intergenic | 45.0% | |
| ATCTAGTGGTGCAGGAAAGA+AGG | - | chr8_3:53201562-53201581 | Msa1295170:intron | 45.0% | |
| ! | GCAGGAAAGAAGGCTTTTAC+TGG | - | chr8_3:53201572-53201591 | Msa1295170:CDS | 45.0% |
| AGTGAGCGAGAGAAGAAGGT+AGG | - | chr8_3:53199715-53199734 | Msa1295170:three_prime_UTR | 50.0% | |
| ! | AAGCGGTTTCCACCTTTTCC+AGG | + | chr8_3:53200047-53200066 | None:intergenic | 50.0% |
| GAAAAGGTGGAAACCGCTTC+TGG | - | chr8_3:53200048-53200067 | Msa1295170:intron | 50.0% | |
| TACCTTCAGTGGCTTCTCTG+GGG | + | chr8_3:53200100-53200119 | None:intergenic | 50.0% | |
| ! | TGGGGTATCCCTAGGAATGT+AGG | - | chr8_3:53200194-53200213 | Msa1295170:intron | 50.0% |
| ! | GGGGTATCCCTAGGAATGTA+GGG | - | chr8_3:53200195-53200214 | Msa1295170:intron | 50.0% |
| GTTATGCTCCCTCGAATGTG+AGG | + | chr8_3:53200315-53200334 | None:intergenic | 50.0% | |
| AGCCACCTGATATTGCCAAG+AGG | + | chr8_3:53200522-53200541 | None:intergenic | 50.0% | |
| TCACCGGCAATGTTTCCATC+CGG | - | chr8_3:53201076-53201095 | Msa1295170:intron | 50.0% | |
| AAGCAAGGTGAGACATGAGC+TGG | + | chr8_3:53201320-53201339 | None:intergenic | 50.0% | |
| CTCACCTTGCTTCCGTGTTA+AGG | - | chr8_3:53201328-53201347 | Msa1295170:intron | 50.0% | |
| CCTTCCTTAACACGGAAGCA+AGG | + | chr8_3:53201335-53201354 | None:intergenic | 50.0% | |
| CCTTGCTTCCGTGTTAAGGA+AGG | - | chr8_3:53201332-53201351 | Msa1295170:intron | 50.0% | |
| TGGAGAGTGGCCTAAAGAAG+TGG | + | chr8_3:53201499-53201518 | None:intergenic | 50.0% | |
| AACCTCACAGTCTTGGAGAG+TGG | + | chr8_3:53201512-53201531 | None:intergenic | 50.0% | |
| GTGTTGAAAGTGATCCCAGC+TGG | - | chr8_3:53201536-53201555 | Msa1295170:intron | 50.0% | |
| ATCCCAGCTGGATCATCTAG+TGG | - | chr8_3:53201548-53201567 | Msa1295170:intron | 50.0% | |
| CACCACTAGATGATCCAGCT+GGG | + | chr8_3:53201553-53201572 | None:intergenic | 50.0% | |
| AGTGAGCGAGAGAAGAAGGT+AGG | - | chr8_3:53199715-53199734 | Msa1295170:three_prime_UTR | 50.0% | |
| ! | AAGCGGTTTCCACCTTTTCC+AGG | + | chr8_3:53200047-53200066 | None:intergenic | 50.0% |
| GAAAAGGTGGAAACCGCTTC+TGG | - | chr8_3:53200048-53200067 | Msa1295170:intron | 50.0% | |
| TACCTTCAGTGGCTTCTCTG+GGG | + | chr8_3:53200100-53200119 | None:intergenic | 50.0% | |
| ! | TGGGGTATCCCTAGGAATGT+AGG | - | chr8_3:53200194-53200213 | Msa1295170:intron | 50.0% |
| ! | GGGGTATCCCTAGGAATGTA+GGG | - | chr8_3:53200195-53200214 | Msa1295170:intron | 50.0% |
| GTTATGCTCCCTCGAATGTG+AGG | + | chr8_3:53200315-53200334 | None:intergenic | 50.0% | |
| AGCCACCTGATATTGCCAAG+AGG | + | chr8_3:53200522-53200541 | None:intergenic | 50.0% | |
| TCACCGGCAATGTTTCCATC+CGG | - | chr8_3:53201076-53201095 | Msa1295170:intron | 50.0% | |
| AAGCAAGGTGAGACATGAGC+TGG | + | chr8_3:53201320-53201339 | None:intergenic | 50.0% | |
| CTCACCTTGCTTCCGTGTTA+AGG | - | chr8_3:53201328-53201347 | Msa1295170:intron | 50.0% | |
| CCTTCCTTAACACGGAAGCA+AGG | + | chr8_3:53201335-53201354 | None:intergenic | 50.0% | |
| CCTTGCTTCCGTGTTAAGGA+AGG | - | chr8_3:53201332-53201351 | Msa1295170:intron | 50.0% | |
| TGGAGAGTGGCCTAAAGAAG+TGG | + | chr8_3:53201499-53201518 | None:intergenic | 50.0% | |
| AACCTCACAGTCTTGGAGAG+TGG | + | chr8_3:53201512-53201531 | None:intergenic | 50.0% | |
| GTGTTGAAAGTGATCCCAGC+TGG | - | chr8_3:53201536-53201555 | Msa1295170:intron | 50.0% | |
| ATCCCAGCTGGATCATCTAG+TGG | - | chr8_3:53201548-53201567 | Msa1295170:intron | 50.0% | |
| CACCACTAGATGATCCAGCT+GGG | + | chr8_3:53201553-53201572 | None:intergenic | 50.0% | |
| !! | CCATGGTGATGGAGTTGCAG+AGG | + | chr8_3:53199766-53199785 | None:intergenic | 55.0% |
| CCTCTGCAACTCCATCACCA+TGG | - | chr8_3:53199763-53199782 | Msa1295170:three_prime_UTR | 55.0% | |
| AAGGGGAAGAGGCCTGGAAA+AGG | - | chr8_3:53200032-53200051 | Msa1295170:intron | 55.0% | |
| ACCTTCAGTGGCTTCTCTGG+GGG | + | chr8_3:53200099-53200118 | None:intergenic | 55.0% | |
| CACCGGCAATGTTTCCATCC+GGG | - | chr8_3:53201077-53201096 | Msa1295170:intron | 55.0% | |
| ACCGGCAATGTTTCCATCCG+GGG | - | chr8_3:53201078-53201097 | Msa1295170:intron | 55.0% | |
| ACCCCGGATGGAAACATTGC+CGG | + | chr8_3:53201082-53201101 | None:intergenic | 55.0% | |
| ATCCGGGGTCGTATCTTAGC+CGG | - | chr8_3:53201093-53201112 | Msa1295170:intron | 55.0% | |
| TTCCGGCTAAGATACGACCC+CGG | + | chr8_3:53201098-53201117 | None:intergenic | 55.0% | |
| GCACCACTAGATGATCCAGC+TGG | + | chr8_3:53201554-53201573 | None:intergenic | 55.0% | |
| GCTGGATCATCTAGTGGTGC+AGG | - | chr8_3:53201554-53201573 | Msa1295170:intron | 55.0% | |
| !! | CCATGGTGATGGAGTTGCAG+AGG | + | chr8_3:53199766-53199785 | None:intergenic | 55.0% |
| CCTCTGCAACTCCATCACCA+TGG | - | chr8_3:53199763-53199782 | Msa1295170:three_prime_UTR | 55.0% | |
| AAGGGGAAGAGGCCTGGAAA+AGG | - | chr8_3:53200032-53200051 | Msa1295170:intron | 55.0% | |
| ACCTTCAGTGGCTTCTCTGG+GGG | + | chr8_3:53200099-53200118 | None:intergenic | 55.0% | |
| CACCGGCAATGTTTCCATCC+GGG | - | chr8_3:53201077-53201096 | Msa1295170:intron | 55.0% | |
| ACCGGCAATGTTTCCATCCG+GGG | - | chr8_3:53201078-53201097 | Msa1295170:intron | 55.0% | |
| ACCCCGGATGGAAACATTGC+CGG | + | chr8_3:53201082-53201101 | None:intergenic | 55.0% | |
| ATCCGGGGTCGTATCTTAGC+CGG | - | chr8_3:53201093-53201112 | Msa1295170:intron | 55.0% | |
| TTCCGGCTAAGATACGACCC+CGG | + | chr8_3:53201098-53201117 | None:intergenic | 55.0% | |
| GCACCACTAGATGATCCAGC+TGG | + | chr8_3:53201554-53201573 | None:intergenic | 55.0% | |
| GCTGGATCATCTAGTGGTGC+AGG | - | chr8_3:53201554-53201573 | Msa1295170:intron | 55.0% | |
| TCTGGAAAGGGGAAGAGGCC+TGG | - | chr8_3:53200026-53200045 | Msa1295170:intron | 60.0% | |
| GGGAAGAGGCCTGGAAAAGG+TGG | - | chr8_3:53200035-53200054 | Msa1295170:intron | 60.0% | |
| ACCCCCAGAGAAGCCACTGA+AGG | - | chr8_3:53200095-53200114 | Msa1295170:intron | 60.0% | |
| GGCTAAGATACGACCCCGGA+TGG | + | chr8_3:53201094-53201113 | None:intergenic | 60.0% | |
| GGCCACTCTCCAAGACTGTG+AGG | - | chr8_3:53201507-53201526 | Msa1295170:intron | 60.0% | |
| TCTGGAAAGGGGAAGAGGCC+TGG | - | chr8_3:53200026-53200045 | Msa1295170:intron | 60.0% | |
| GGGAAGAGGCCTGGAAAAGG+TGG | - | chr8_3:53200035-53200054 | Msa1295170:intron | 60.0% | |
| ACCCCCAGAGAAGCCACTGA+AGG | - | chr8_3:53200095-53200114 | Msa1295170:intron | 60.0% | |
| GGCTAAGATACGACCCCGGA+TGG | + | chr8_3:53201094-53201113 | None:intergenic | 60.0% | |
| GGCCACTCTCCAAGACTGTG+AGG | - | chr8_3:53201507-53201526 | Msa1295170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53199712 | 53201782 | 53199712 | ID=Msa1295170;Name=Msa1295170 |
| chr8_3 | mRNA | 53199712 | 53201782 | 53199712 | ID=Msa1295170-mRNA-1;Parent=Msa1295170;Name=Msa1295170-mRNA-1;_AED=0.09;_eAED=0.09;_QI=70|1|1|1|1|1|6|181|160 |
| chr8_3 | exon | 53199712 | 53199986 | 53199712 | ID=Msa1295170-mRNA-1:exon:15269;Parent=Msa1295170-mRNA-1 |
| chr8_3 | exon | 53200113 | 53200202 | 53200113 | ID=Msa1295170-mRNA-1:exon:15268;Parent=Msa1295170-mRNA-1 |
| chr8_3 | exon | 53200301 | 53200445 | 53200301 | ID=Msa1295170-mRNA-1:exon:15267;Parent=Msa1295170-mRNA-1 |
| chr8_3 | exon | 53201378 | 53201478 | 53201378 | ID=Msa1295170-mRNA-1:exon:15266;Parent=Msa1295170-mRNA-1 |
| chr8_3 | exon | 53201568 | 53201608 | 53201568 | ID=Msa1295170-mRNA-1:exon:15265;Parent=Msa1295170-mRNA-1 |
| chr8_3 | exon | 53201701 | 53201782 | 53201701 | ID=Msa1295170-mRNA-1:exon:15264;Parent=Msa1295170-mRNA-1 |
| chr8_3 | five_prime_UTR | 53201713 | 53201782 | 53201713 | ID=Msa1295170-mRNA-1:five_prime_utr;Parent=Msa1295170-mRNA-1 |
| chr8_3 | CDS | 53201701 | 53201712 | 53201701 | ID=Msa1295170-mRNA-1:cds;Parent=Msa1295170-mRNA-1 |
| chr8_3 | CDS | 53201568 | 53201608 | 53201568 | ID=Msa1295170-mRNA-1:cds;Parent=Msa1295170-mRNA-1 |
| chr8_3 | CDS | 53201378 | 53201478 | 53201378 | ID=Msa1295170-mRNA-1:cds;Parent=Msa1295170-mRNA-1 |
| chr8_3 | CDS | 53200301 | 53200445 | 53200301 | ID=Msa1295170-mRNA-1:cds;Parent=Msa1295170-mRNA-1 |
| chr8_3 | CDS | 53200113 | 53200202 | 53200113 | ID=Msa1295170-mRNA-1:cds;Parent=Msa1295170-mRNA-1 |
| chr8_3 | CDS | 53199893 | 53199986 | 53199893 | ID=Msa1295170-mRNA-1:cds;Parent=Msa1295170-mRNA-1 |
| chr8_3 | three_prime_UTR | 53199712 | 53199892 | 53199712 | ID=Msa1295170-mRNA-1:three_prime_utr;Parent=Msa1295170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
