AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550610 MtrunA17_Chr4g0035551 97.238 362 10 0 1 362 1 362 0.0 744
Msa0550610 MtrunA17_Chr1g0155781 70.380 368 97 6 1 360 1 364 0.0 533
Msa0550610 MtrunA17_Chr4g0036281 67.663 368 77 7 1 363 1 331 7.78e-177 494
Msa0550610 MtrunA17_Chr4g0036731 68.407 364 71 7 3 363 5 327 1.20e-176 493
Msa0550610 MtrunA17_Chr4g0037291 67.680 362 79 6 4 363 47 372 1.90e-176 494
Msa0550610 MtrunA17_Chr1g0199131 53.760 359 155 6 10 360 15 370 1.38e-141 406
Msa0550610 MtrunA17_Chr4g0070441 38.630 365 184 11 8 355 6 347 2.99e-67 216
Msa0550610 MtrunA17_Chr1g0208261 42.000 300 148 7 50 341 94 375 4.60e-67 220
Msa0550610 MtrunA17_Chr4g0041061 38.310 355 178 13 5 348 12 336 1.52e-66 214
Msa0550610 MtrunA17_Chr0c27g0493921 38.843 363 182 11 8 353 6 345 1.61e-66 214
Msa0550610 MtrunA17_Chr4g0024411 39.744 312 160 10 54 353 44 339 1.48e-65 211
Msa0550610 MtrunA17_Chr4g0040881 39.634 328 167 12 32 348 29 336 1.58e-65 211
Msa0550610 MtrunA17_Chr3g0134231 36.963 349 185 10 5 341 16 341 1.29e-64 212
Msa0550610 MtrunA17_Chr4g0041081 38.438 333 174 12 32 353 29 341 2.43e-64 208
Msa0550610 MtrunA17_Chr5g0405751 39.252 321 166 11 45 353 37 340 1.13e-63 206
Msa0550610 MtrunA17_Chr4g0053311 39.216 357 155 14 5 341 7 321 1.49e-63 206
Msa0550610 MtrunA17_Chr3g0144281 36.364 363 185 13 5 353 14 344 5.67e-63 204
Msa0550610 MtrunA17_Chr4g0040851 34.270 356 206 10 5 353 22 356 2.81e-62 203
Msa0550610 MtrunA17_Chr4g0041481 37.107 318 175 8 38 348 32 331 3.36e-62 202
Msa0550610 MtrunA17_Chr4g0041521 37.086 302 167 7 54 348 46 331 3.51e-61 199
Msa0550610 MtrunA17_Chr4g0060251 39.103 312 162 10 54 353 46 341 5.55e-61 199
Msa0550610 MtrunA17_Chr3g0142071 37.695 321 167 11 48 353 50 352 8.31e-59 197
Msa0550610 MtrunA17_Chr4g0041471 35.831 307 169 9 54 348 43 333 1.13e-57 191
Msa0550610 MtrunA17_Chr3g0116551 37.458 299 158 8 63 348 54 336 1.24e-57 191
Msa0550610 MtrunA17_Chr2g0315491 37.417 302 168 6 54 348 45 332 1.27e-57 190
Msa0550610 MtrunA17_Chr4g0058081 38.033 305 157 10 58 348 49 335 4.49e-56 187
Msa0550610 MtrunA17_Chr8g0379151 33.962 371 197 14 4 352 24 368 1.86e-55 186
Msa0550610 MtrunA17_Chr2g0325121 35.312 320 179 8 48 359 39 338 4.54e-55 184
Msa0550610 MtrunA17_Chr2g0283901 36.137 321 171 11 48 353 51 352 2.01e-54 186
Msa0550610 MtrunA17_Chr2g0283741 32.527 372 195 14 8 350 8 352 2.90e-54 182
Msa0550610 MtrunA17_Chr1g0153011 36.066 366 165 13 1 341 1 322 7.87e-54 184
Msa0550610 MtrunA17_Chr2g0319991 36.826 334 176 15 41 358 30 344 1.88e-52 177
Msa0550610 MtrunA17_Chr2g0283671 41.629 221 111 5 122 341 5 208 1.33e-50 169
Msa0550610 MtrunA17_Chr7g0248391 32.288 319 179 9 42 348 36 329 1.94e-46 161
Msa0550610 MtrunA17_Chr2g0311471 31.818 374 198 15 4 353 2 342 1.05e-45 159
Msa0550610 MtrunA17_Chr7g0248811 30.915 317 187 8 42 348 33 327 6.42e-43 152
Msa0550610 MtrunA17_Chr2g0311381 31.795 390 197 17 1 359 1 352 1.95e-42 151
Msa0550610 MtrunA17_Chr1g0156161 41.441 222 110 7 129 347 47 251 2.72e-41 145
Msa0550610 MtrunA17_Chr2g0311391 29.584 409 200 17 4 362 2 372 7.33e-40 144
Msa0550610 MtrunA17_Chr8g0379671 48.529 136 54 4 172 306 23 143 2.33e-37 132
Msa0550610 MtrunA17_Chr2g0283751 30.888 259 152 7 6 256 12 251 3.11e-34 127
Msa0550610 MtrunA17_Chr7g0271031 30.556 288 153 14 95 353 110 379 2.84e-24 102
Msa0550610 MtrunA17_Chr7g0271041 29.371 286 159 12 95 353 66 335 3.25e-23 99.4
Msa0550610 MtrunA17_Chr1g0156771 47.009 117 49 5 126 239 50 156 2.94e-22 92.0
Msa0550610 MtrunA17_Chr2g0311091 31.313 198 105 6 1 181 1 184 2.48e-19 84.7
Msa0550610 MtrunA17_Chr2g0283661 36.879 141 79 3 54 184 39 179 2.72e-19 86.7
Msa0550610 MtrunA17_Chr2g0283661 34.746 118 69 3 244 360 161 271 9.04e-14 70.9
Msa0550610 MtrunA17_Chr7g0248421 32.258 155 91 3 155 307 57 199 7.90e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550610 AT2G21430.1 73.333 360 93 3 1 358 1 359 0.0 560
Msa0550610 AT4G39090.1 75.073 341 83 2 24 362 26 366 0.0 553
Msa0550610 AT4G16190.1 67.914 374 108 5 1 363 1 373 0.0 512
Msa0550610 AT3G54940.2 58.726 361 132 7 6 356 9 362 8.84e-154 437
Msa0550610 AT3G54940.3 54.182 275 110 6 6 271 9 276 3.83e-100 298
Msa0550610 AT3G45310.1 39.045 356 182 11 10 348 11 348 2.30e-67 216
Msa0550610 AT5G60360.1 39.339 333 174 9 31 353 39 353 4.15e-67 216
Msa0550610 AT3G19400.1 39.879 331 165 11 36 353 36 345 9.12e-67 215
Msa0550610 AT5G60360.3 39.755 327 169 9 31 347 39 347 3.94e-66 213
Msa0550610 AT3G45310.2 38.701 354 182 11 10 346 11 346 6.50e-66 213
Msa0550610 AT5G60360.2 39.571 326 169 9 31 346 39 346 1.13e-65 212
Msa0550610 AT3G19390.1 38.227 361 182 12 8 353 8 342 4.78e-65 213
Msa0550610 AT1G20850.1 39.117 317 165 8 48 353 51 350 2.22e-64 209
Msa0550610 AT1G47128.1 40.203 296 157 5 50 341 54 333 3.20e-64 211
Msa0550610 AT1G09850.1 39.198 324 166 11 48 359 32 336 6.73e-64 210
Msa0550610 AT5G45890.1 34.711 363 194 10 1 348 3 337 7.16e-63 204
Msa0550610 AT5G43060.1 41.844 282 143 7 64 341 70 334 1.31e-62 207
Msa0550610 AT1G06260.1 38.462 325 159 13 45 353 40 339 6.81e-62 202
Msa0550610 AT1G29090.1 39.252 321 161 12 44 348 44 346 8.77e-62 202
Msa0550610 AT3G43960.1 40.956 293 152 7 56 341 49 327 1.49e-61 202
Msa0550610 AT4G35350.1 37.025 316 172 8 48 353 51 349 5.94e-61 200
Msa0550610 AT4G36880.1 39.446 289 148 6 64 341 69 341 5.78e-60 198
Msa0550610 AT4G23520.1 34.153 366 195 14 5 353 10 346 9.75e-59 194
Msa0550610 AT3G48340.1 40.000 295 149 8 58 341 47 324 1.74e-58 194
Msa0550610 AT2G27420.1 36.278 317 162 11 54 348 41 339 5.93e-57 189
Msa0550610 AT5G50260.1 38.782 312 146 10 58 348 47 334 5.72e-56 187
Msa0550610 AT3G48350.1 35.143 350 186 11 7 342 3 325 2.15e-54 183
Msa0550610 AT1G29080.1 36.943 314 168 9 54 353 45 342 2.19e-54 182
Msa0550610 AT2G34080.1 32.507 363 197 13 5 348 3 336 2.63e-53 179
Msa0550610 AT4G11320.2 32.970 367 199 11 6 348 8 351 1.46e-52 178
Msa0550610 AT4G11320.1 32.970 367 199 11 6 348 8 351 1.46e-52 178
Msa0550610 AT3G49340.1 34.185 313 173 11 54 351 41 335 3.45e-52 177
Msa0550610 AT4G11310.1 32.312 359 204 10 6 348 9 344 9.78e-52 176
Msa0550610 AT3G19400.2 39.431 246 133 6 36 276 36 270 3.62e-50 170
Msa0550610 AT4G35350.2 36.052 233 136 4 48 276 51 274 1.59e-45 157
Msa0550610 AT1G29110.1 32.154 311 166 9 54 348 44 325 3.21e-42 150
Msa0550610 AT3G48350.2 33.115 305 154 10 7 287 3 281 1.03e-38 140
Msa0550610 AT1G02305.1 30.556 288 151 15 95 352 69 337 3.08e-23 99.8
Msa0550610 AT4G01610.1 29.560 318 169 14 61 349 40 331 3.79e-23 99.4
Msa0550610 AT4G01610.2 29.245 318 170 14 61 349 40 331 5.03e-22 96.3
Msa0550610 AT1G02300.1 27.597 308 154 17 95 352 66 354 1.96e-18 86.3

Find 96 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATATATACTGCATTTA+AGG 0.130654 4_1:+46169942 None:intergenic
AACCTATTTAAACATAAGTT+TGG 0.234066 4_1:-46171287 Msa0550610:CDS
TCTCTCCAATCAAAATCTTT+TGG 0.234300 4_1:+46171038 None:intergenic
TCGACCACCTGTCGGATTAT+TGG 0.251997 4_1:+46171347 None:intergenic
TCCCAAACTTATGTTTAAAT+AGG 0.268902 4_1:+46171285 None:intergenic
CCAAGGATGAACATGATTAC+AGG 0.304516 4_1:-46171250 Msa0550610:CDS
GGTGAGACTTGGGGAGAAAA+TGG 0.310928 4_1:-46169778 Msa0550610:CDS
CTGGAGCCTATTCGCCTATT+AGG 0.320950 4_1:-46169840 Msa0550610:CDS
GGAGTTTCGTCAGAGCGTTT+TGG 0.321592 4_1:-46171126 Msa0550610:CDS
TGAATACTGGCAACAATTCA+TGG 0.344244 4_1:+46169609 None:intergenic
GAAGAAGACTATCCTTATTC+TGG 0.363696 4_1:-46170196 Msa0550610:CDS
CCACGATCAGTACCAGAATA+AGG 0.365501 4_1:+46170184 None:intergenic
ACTAGATCATGGAGTGTTAC+TGG 0.371273 4_1:-46169875 Msa0550610:CDS
AGATTATCTGTGGGAAGAAC+CGG 0.374712 4_1:+46171062 None:intergenic
ACCTATTTAAACATAAGTTT+GGG 0.393244 4_1:-46171286 Msa0550610:CDS
AGTCTCTTTGAGCATATGTA+TGG 0.401014 4_1:+46169895 None:intergenic
GGCTTCTCCTTCATCCTAAT+AGG 0.407412 4_1:+46169826 None:intergenic
TCACAAGAACCCGGTTGCTC+TGG 0.408096 4_1:+46170289 None:intergenic
GGAGTGTTACTGGTGGGATA+TGG 0.410428 4_1:-46169865 Msa0550610:CDS
GGGGCTGCATTAGCATCTTT+CGG 0.417402 4_1:+46171083 None:intergenic
CCATATTAAAACATGAATAC+TGG 0.420946 4_1:+46169596 None:intergenic
GGATGAAGGAGAAGCCATAT+TGG 0.423435 4_1:-46169819 Msa0550610:CDS
TGCTAAGAAGCATCAATTGA+TGG 0.425569 4_1:-46171198 Msa0550610:CDS
TGACAAGATTAGCGGCAATC+TGG 0.430610 4_1:+46170089 None:intergenic
CTTCATCCTAATAGGCGAAT+AGG 0.432818 4_1:+46169834 None:intergenic
CAACCGGGTTCTTGTGATGC+CGG 0.438520 4_1:-46170283 Msa0550610:CDS
AACAACAATTTATAGATGTA+TGG 0.449877 4_1:-46169509 Msa0550610:three_prime_UTR
ATAGTGTGATCCAGAGCAAC+CGG 0.450276 4_1:-46170299 Msa0550610:intron
TCTTGTGATGCCGGGTGCAA+TGG 0.456716 4_1:-46170274 Msa0550610:CDS
CCTGTAATCATGTTCATCCT+TGG 0.456777 4_1:+46171250 None:intergenic
AAAACTCATGGGGTGAGACT+TGG 0.466256 4_1:-46169789 Msa0550610:CDS
ATGGATACTACAAAATATGT+AGG 0.468027 4_1:-46169759 Msa0550610:CDS
AAAGAACGATGAAGAGAAGA+AGG 0.469157 4_1:+46171417 None:intergenic
TGTTGGAGTTTCAGTACAAC+CGG 0.469204 4_1:-46170846 Msa0550610:CDS
AAACTCATGGGGTGAGACTT+GGG 0.470356 4_1:-46169788 Msa0550610:CDS
GGTTGCAATTGCGGTAAGTA+AGG 0.473415 4_1:+46171520 None:intergenic
TGATCCATGACTTGAGGATA+AGG 0.477707 4_1:+46171446 None:intergenic
GCATCAATTGATGGATCCTT+CGG 0.479257 4_1:-46171189 Msa0550610:CDS
TGGATACTACAAAATATGTA+GGG 0.487201 4_1:-46169758 Msa0550610:CDS
AGGAAAATCGCAGAATAGAA+TGG 0.490821 4_1:+46171466 None:intergenic
AACCGGGTTCTTGTGATGCC+GGG 0.494687 4_1:-46170282 Msa0550610:CDS
ATGGATCCTTCGGCAGTTCA+CGG 0.502507 4_1:-46171179 Msa0550610:CDS
ATTGGATCTTCTCCTTCGTC+CGG 0.505970 4_1:+46171365 None:intergenic
TTACTGGTGGGATATGGATC+TGG 0.507620 4_1:-46169859 Msa0550610:CDS
TCAATTGATGCTTCTTAGCA+CGG 0.511562 4_1:+46171201 None:intergenic
GACGATGAAGAAGTGCGGTT+GGG 0.513257 4_1:-46171326 Msa0550610:CDS
GATTATCTGTGGGAAGAACC+GGG 0.518251 4_1:+46171063 None:intergenic
TGGGAAGGTTTATTCTTCCA+AGG 0.519917 4_1:-46171267 Msa0550610:CDS
GGTGCTCACTTTCTCTCGAC+CGG 0.523916 4_1:-46170813 Msa0550610:CDS
ATATATAGAGGTTGCAATTG+CGG 0.543125 4_1:+46171511 None:intergenic
CCTTATTCTGGTACTGATCG+TGG 0.543158 4_1:-46170184 Msa0550610:CDS
CGACGATGAAGAAGTGCGGT+TGG 0.543666 4_1:-46171327 Msa0550610:CDS
CTTTAGCACTTACTAGCAAG+AGG 0.547021 4_1:+46170058 None:intergenic
CTTCATCGTCGACCACCTGT+CGG 0.547560 4_1:+46171339 None:intergenic
AGTACAACCGGTGCACTTGA+AGG 0.552820 4_1:-46170834 Msa0550610:CDS
AAACTCCCTCGGAGTAAGAT+CGG 0.553683 4_1:+46171142 None:intergenic
TTCTTCGCGCATCACCCCAC+CGG 0.555594 4_1:+46170213 None:intergenic
CATCAGACCACCATTGCACC+CGG 0.562811 4_1:+46170264 None:intergenic
CTATTCGCCTATTAGGATGA+AGG 0.564118 4_1:-46169833 Msa0550610:CDS
AGAAGATCCAATAATCCGAC+AGG 0.566385 4_1:-46171354 Msa0550610:CDS
TGCTCAAAGAGACTAGATCA+TGG 0.566764 4_1:-46169886 Msa0550610:CDS
GTCTCTTTGAGCATATGTAT+GGG 0.587803 4_1:+46169896 None:intergenic
ATTTAAACATAAGTTTGGGA+AGG 0.587990 4_1:-46171282 Msa0550610:CDS
GAAAGATGCTAATGCAGCCC+CGG 0.591807 4_1:-46171081 Msa0550610:CDS
GTGAGCACCTTCAAGTGCAC+CGG 0.592969 4_1:+46170827 None:intergenic
AACTCATGGGGTGAGACTTG+GGG 0.593059 4_1:-46169787 Msa0550610:CDS
ACTTGTCGATTGTGATCATG+AGG 0.595475 4_1:-46170763 Msa0550610:intron
AGGGCTCGTGTGGATCATGT+TGG 0.600721 4_1:-46170863 Msa0550610:CDS
GTATATATGCAAACATACAT+TGG 0.601664 4_1:-46169931 Msa0550610:CDS
TGTGATGCCGGGTGCAATGG+TGG 0.601772 4_1:-46170271 Msa0550610:CDS
TATATGCGGAGTGGACTCCA+TGG 0.603926 4_1:-46169728 Msa0550610:CDS
ACGCTCTGACGAAACTCCCT+CGG 0.605558 4_1:+46171131 None:intergenic
ATTCTCCGATCTTACTCCGA+GGG 0.607597 4_1:-46171147 Msa0550610:CDS
CACCCGGCATCACAAGAACC+CGG 0.609271 4_1:+46170280 None:intergenic
TATATGCAAACATACATTGG+AGG 0.612222 4_1:-46169928 Msa0550610:CDS
GTGCGATGATCCATGACTTG+AGG 0.617552 4_1:+46171440 None:intergenic
CGGCGTAGAGAATGCCGAGA+CGG 0.623788 4_1:+46171385 None:intergenic
CTACTGAGTAGTAGTATGAA+CGG 0.624053 4_1:+46169690 None:intergenic
GGACTCCATGGTTTCTACTG+TGG 0.626354 4_1:-46169716 Msa0550610:CDS
TCGCAGAATAGAATGGAAAG+TGG 0.626877 4_1:+46171473 None:intergenic
GATCATGGAGTGTTACTGGT+GGG 0.636411 4_1:-46169871 Msa0550610:CDS
GTAACACCGTGAACTGCCGA+AGG 0.639644 4_1:+46171173 None:intergenic
TAGTGTGATCCAGAGCAACC+GGG 0.639888 4_1:-46170298 Msa0550610:CDS
GCATTCTCTACGCCGGACGA+AGG 0.643570 4_1:-46171377 Msa0550610:CDS
GGCAGCCACAGTAGAAACCA+TGG 0.655273 4_1:+46169711 None:intergenic
GGATACTACAAAATATGTAG+GGG 0.655808 4_1:-46169757 Msa0550610:CDS
CGTCTCGGCATTCTCTACGC+CGG 0.661935 4_1:-46171384 Msa0550610:CDS
AAGAACGATGAAGAGAAGAA+GGG 0.663817 4_1:+46171418 None:intergenic
AGATCATGGAGTGTTACTGG+TGG 0.667806 4_1:-46169872 Msa0550610:CDS
AGATCCAATAATCCGACAGG+TGG 0.675027 4_1:-46171351 Msa0550610:CDS
GGGACGAAATATATGCGGAG+TGG 0.692655 4_1:-46169737 Msa0550610:CDS
ATAATGATTCAGGGCTCGTG+TGG 0.698479 4_1:-46170873 Msa0550610:intron
TGTAGGGGACGAAATATATG+CGG 0.700373 4_1:-46169742 Msa0550610:CDS
AATTCTCCGATCTTACTCCG+AGG 0.702571 4_1:-46171148 Msa0550610:CDS
ATTATCTGTGGGAAGAACCG+GGG 0.712835 4_1:+46171064 None:intergenic
TGGTCGACGATGAAGAAGTG+CGG 0.727360 4_1:-46171331 Msa0550610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATCATAATAACAAT+TGG + chr4_1:46170045-46170064 None:intergenic 10.0%
!! TTATTATATGTTATCTAAAT+TGG - chr4_1:46170671-46170690 Msa0550610:intron 10.0%
!!! TGTTTATTTATTTTATATTG+TGG - chr4_1:46171381-46171400 Msa0550610:CDS 10.0%
!!! ATATGATTCTATTTTAAAAA+TGG - chr4_1:46171560-46171579 Msa0550610:five_prime_UTR 10.0%
!!! TATGATTCTATTTTAAAAAT+GGG - chr4_1:46171561-46171580 Msa0550610:five_prime_UTR 10.0%
!! ATAATAATCATAATAACAAT+TGG + chr4_1:46170045-46170064 None:intergenic 10.0%
!! TTATTATATGTTATCTAAAT+TGG - chr4_1:46170671-46170690 Msa0550610:intron 10.0%
!!! TGTTTATTTATTTTATATTG+TGG - chr4_1:46171381-46171400 Msa0550610:CDS 10.0%
!!! ATATGATTCTATTTTAAAAA+TGG - chr4_1:46171560-46171579 Msa0550610:five_prime_UTR 10.0%
!!! TATGATTCTATTTTAAAAAT+GGG - chr4_1:46171561-46171580 Msa0550610:five_prime_UTR 10.0%
!!! GAGTTTTATTTTATATATAG+AGG + chr4_1:46169521-46169540 None:intergenic 15.0%
!! GATATACTATTAATTACAAA+CGG + chr4_1:46170302-46170321 None:intergenic 15.0%
!! ATCTTTACAGAATTATTTAT+TGG - chr4_1:46170605-46170624 Msa0550610:intron 15.0%
!! TCTTTACAGAATTATTTATT+GGG - chr4_1:46170606-46170625 Msa0550610:intron 15.0%
!!! GAGTTTTATTTTATATATAG+AGG + chr4_1:46169521-46169540 None:intergenic 15.0%
!! GATATACTATTAATTACAAA+CGG + chr4_1:46170302-46170321 None:intergenic 15.0%
!! ATCTTTACAGAATTATTTAT+TGG - chr4_1:46170605-46170624 Msa0550610:intron 15.0%
!! TCTTTACAGAATTATTTATT+GGG - chr4_1:46170606-46170625 Msa0550610:intron 15.0%
!! AACCTATTTAAACATAAGTT+TGG - chr4_1:46169730-46169749 Msa0550610:CDS 20.0%
!! ACCTATTTAAACATAAGTTT+GGG - chr4_1:46169731-46169750 Msa0550610:CDS 20.0%
!!! AAAACAAATTTTGATTGTGT+TGG - chr4_1:46170100-46170119 Msa0550610:CDS 20.0%
!!! AAACAAATTTTGATTGTGTT+GGG - chr4_1:46170101-46170120 Msa0550610:CDS 20.0%
!! ATTAATTACAAACGGAAAAT+AGG + chr4_1:46170294-46170313 None:intergenic 20.0%
!! AATTAATAGTATATCTGCTA+AGG - chr4_1:46170307-46170326 Msa0550610:intron 20.0%
!! ATACAATATCTAATAGAGTT+TGG + chr4_1:46170440-46170459 None:intergenic 20.0%
!! AAATGCTATCTTGTAATATT+TGG - chr4_1:46170629-46170648 Msa0550610:intron 20.0%
!! AATGCTATCTTGTAATATTT+GGG - chr4_1:46170630-46170649 Msa0550610:intron 20.0%
!! ATATGTTATCTAAATTGGTT+TGG - chr4_1:46170676-46170695 Msa0550610:intron 20.0%
!!! TTTGAGTACATTTTAAAATC+CGG - chr4_1:46170785-46170804 Msa0550610:CDS 20.0%
!!! GAGTTTTTAATTATCCAATA+TGG + chr4_1:46171215-46171234 None:intergenic 20.0%
!! ATTGGATAATTAAAAACTCA+TGG - chr4_1:46171216-46171235 Msa0550610:CDS 20.0%
!! TTGGATAATTAAAAACTCAT+GGG - chr4_1:46171217-46171236 Msa0550610:CDS 20.0%
!! AACAACAATTTATAGATGTA+TGG - chr4_1:46171508-46171527 Msa0550610:five_prime_UTR 20.0%
!! AACCTATTTAAACATAAGTT+TGG - chr4_1:46169730-46169749 Msa0550610:CDS 20.0%
!! ACCTATTTAAACATAAGTTT+GGG - chr4_1:46169731-46169750 Msa0550610:CDS 20.0%
!!! AAAACAAATTTTGATTGTGT+TGG - chr4_1:46170100-46170119 Msa0550610:CDS 20.0%
!!! AAACAAATTTTGATTGTGTT+GGG - chr4_1:46170101-46170120 Msa0550610:CDS 20.0%
!! ATTAATTACAAACGGAAAAT+AGG + chr4_1:46170294-46170313 None:intergenic 20.0%
!! AATTAATAGTATATCTGCTA+AGG - chr4_1:46170307-46170326 Msa0550610:intron 20.0%
!! ATACAATATCTAATAGAGTT+TGG + chr4_1:46170440-46170459 None:intergenic 20.0%
!! AAATGCTATCTTGTAATATT+TGG - chr4_1:46170629-46170648 Msa0550610:intron 20.0%
!! AATGCTATCTTGTAATATTT+GGG - chr4_1:46170630-46170649 Msa0550610:intron 20.0%
!! ATATGTTATCTAAATTGGTT+TGG - chr4_1:46170676-46170695 Msa0550610:intron 20.0%
!!! TTTGAGTACATTTTAAAATC+CGG - chr4_1:46170785-46170804 Msa0550610:CDS 20.0%
!!! GAGTTTTTAATTATCCAATA+TGG + chr4_1:46171215-46171234 None:intergenic 20.0%
!! ATTGGATAATTAAAAACTCA+TGG - chr4_1:46171216-46171235 Msa0550610:CDS 20.0%
!! TTGGATAATTAAAAACTCAT+GGG - chr4_1:46171217-46171236 Msa0550610:CDS 20.0%
!! AACAACAATTTATAGATGTA+TGG - chr4_1:46171508-46171527 Msa0550610:five_prime_UTR 20.0%
! TCCCAAACTTATGTTTAAAT+AGG + chr4_1:46169735-46169754 None:intergenic 25.0%
! ATTTAAACATAAGTTTGGGA+AGG - chr4_1:46169735-46169754 Msa0550610:CDS 25.0%
!!! ATCTTCCAAAAGATTTTGAT+TGG - chr4_1:46169974-46169993 Msa0550610:intron 25.0%
! TATCTGATGTTAATCTTTCT+AGG - chr4_1:46170384-46170403 Msa0550610:intron 25.0%
! ACTCTATTAGATATTGTATG+AGG - chr4_1:46170441-46170460 Msa0550610:intron 25.0%
!! AGCAAATTTGAAACATGATT+AGG - chr4_1:46170537-46170556 Msa0550610:intron 25.0%
! ATGCTATCTTGTAATATTTG+GGG - chr4_1:46170631-46170650 Msa0550610:intron 25.0%
! TTGCATATATACTGCATTTA+AGG + chr4_1:46171078-46171097 None:intergenic 25.0%
! GTATATATGCAAACATACAT+TGG - chr4_1:46171086-46171105 Msa0550610:CDS 25.0%
! TGGATAATTAAAAACTCATG+GGG - chr4_1:46171218-46171237 Msa0550610:CDS 25.0%
! ATGGATACTACAAAATATGT+AGG - chr4_1:46171258-46171277 Msa0550610:CDS 25.0%
! TGGATACTACAAAATATGTA+GGG - chr4_1:46171259-46171278 Msa0550610:CDS 25.0%
! CCATATTAAAACATGAATAC+TGG + chr4_1:46171424-46171443 None:intergenic 25.0%
!!! CCAGTATTCATGTTTTAATA+TGG - chr4_1:46171421-46171440 Msa0550610:CDS 25.0%
! ACTAGATTAAGATTGAATTG+AGG + chr4_1:46169456-46169475 None:intergenic 25.0%
! TCCCAAACTTATGTTTAAAT+AGG + chr4_1:46169735-46169754 None:intergenic 25.0%
! ATTTAAACATAAGTTTGGGA+AGG - chr4_1:46169735-46169754 Msa0550610:CDS 25.0%
!!! ATCTTCCAAAAGATTTTGAT+TGG - chr4_1:46169974-46169993 Msa0550610:intron 25.0%
! TATCTGATGTTAATCTTTCT+AGG - chr4_1:46170384-46170403 Msa0550610:intron 25.0%
! ACTCTATTAGATATTGTATG+AGG - chr4_1:46170441-46170460 Msa0550610:intron 25.0%
!! AGCAAATTTGAAACATGATT+AGG - chr4_1:46170537-46170556 Msa0550610:intron 25.0%
! ATGCTATCTTGTAATATTTG+GGG - chr4_1:46170631-46170650 Msa0550610:intron 25.0%
! TTGCATATATACTGCATTTA+AGG + chr4_1:46171078-46171097 None:intergenic 25.0%
! GTATATATGCAAACATACAT+TGG - chr4_1:46171086-46171105 Msa0550610:CDS 25.0%
! TGGATAATTAAAAACTCATG+GGG - chr4_1:46171218-46171237 Msa0550610:CDS 25.0%
! ATGGATACTACAAAATATGT+AGG - chr4_1:46171258-46171277 Msa0550610:CDS 25.0%
! TGGATACTACAAAATATGTA+GGG - chr4_1:46171259-46171278 Msa0550610:CDS 25.0%
! CCATATTAAAACATGAATAC+TGG + chr4_1:46171424-46171443 None:intergenic 25.0%
!!! CCAGTATTCATGTTTTAATA+TGG - chr4_1:46171421-46171440 Msa0550610:CDS 25.0%
ATATATAGAGGTTGCAATTG+CGG + chr4_1:46169509-46169528 None:intergenic 30.0%
!! TCTTTTGGAAGATTATCTGT+GGG + chr4_1:46169967-46169986 None:intergenic 30.0%
!! ATCTTTTGGAAGATTATCTG+TGG + chr4_1:46169968-46169987 None:intergenic 30.0%
! TCTCTCCAATCAAAATCTTT+TGG + chr4_1:46169982-46170001 None:intergenic 30.0%
AGTTACTGCTGTTAAAAATC+AGG - chr4_1:46170011-46170030 Msa0550610:intron 30.0%
!!! AGTACATTTTAAAATCCGGT+GGG - chr4_1:46170789-46170808 Msa0550610:CDS 30.0%
GCTAAAGTCTTAACAATTTG+TGG - chr4_1:46170975-46170994 Msa0550610:intron 30.0%
TATATGCAAACATACATTGG+AGG - chr4_1:46171089-46171108 Msa0550610:CDS 30.0%
GGATACTACAAAATATGTAG+GGG - chr4_1:46171260-46171279 Msa0550610:CDS 30.0%
!!! TTCATGTTTTAATATGGTGC+TGG - chr4_1:46171427-46171446 Msa0550610:CDS 30.0%
ATATATAGAGGTTGCAATTG+CGG + chr4_1:46169509-46169528 None:intergenic 30.0%
!! TCTTTTGGAAGATTATCTGT+GGG + chr4_1:46169967-46169986 None:intergenic 30.0%
!! ATCTTTTGGAAGATTATCTG+TGG + chr4_1:46169968-46169987 None:intergenic 30.0%
! TCTCTCCAATCAAAATCTTT+TGG + chr4_1:46169982-46170001 None:intergenic 30.0%
AGTTACTGCTGTTAAAAATC+AGG - chr4_1:46170011-46170030 Msa0550610:intron 30.0%
!!! AGTACATTTTAAAATCCGGT+GGG - chr4_1:46170789-46170808 Msa0550610:CDS 30.0%
GCTAAAGTCTTAACAATTTG+TGG - chr4_1:46170975-46170994 Msa0550610:intron 30.0%
TATATGCAAACATACATTGG+AGG - chr4_1:46171089-46171108 Msa0550610:CDS 30.0%
GGATACTACAAAATATGTAG+GGG - chr4_1:46171260-46171279 Msa0550610:CDS 30.0%
!!! TTCATGTTTTAATATGGTGC+TGG - chr4_1:46171427-46171446 Msa0550610:CDS 30.0%
AGGAAAATCGCAGAATAGAA+TGG + chr4_1:46169554-46169573 None:intergenic 35.0%
! TTTTCCTTATCCTCAAGTCA+TGG - chr4_1:46169567-46169586 Msa0550610:three_prime_UTR 35.0%
AAGAACGATGAAGAGAAGAA+GGG + chr4_1:46169602-46169621 None:intergenic 35.0%
AAAGAACGATGAAGAGAAGA+AGG + chr4_1:46169603-46169622 None:intergenic 35.0%
TCAATTGATGCTTCTTAGCA+CGG + chr4_1:46169819-46169838 None:intergenic 35.0%
!! TGCTAAGAAGCATCAATTGA+TGG - chr4_1:46169819-46169838 Msa0550610:CDS 35.0%
!!! GATTTTGATTGGAGAGAGAA+AGG - chr4_1:46169985-46170004 Msa0550610:intron 35.0%
TTGTGTTGGGTTTGTGATAA+TGG - chr4_1:46170114-46170133 Msa0550610:CDS 35.0%
ATTGTATGAGGTTCGACTTA+AGG - chr4_1:46170453-46170472 Msa0550610:intron 35.0%
!!! GAGTACATTTTAAAATCCGG+TGG - chr4_1:46170788-46170807 Msa0550610:CDS 35.0%
!!! GTACATTTTAAAATCCGGTG+GGG - chr4_1:46170790-46170809 Msa0550610:CDS 35.0%
GAAGAAGACTATCCTTATTC+TGG - chr4_1:46170821-46170840 Msa0550610:CDS 35.0%
!! ACCGTTTTTGACAAGATTAG+CGG + chr4_1:46170939-46170958 None:intergenic 35.0%
GTCTCTTTGAGCATATGTAT+GGG + chr4_1:46171124-46171143 None:intergenic 35.0%
AGTCTCTTTGAGCATATGTA+TGG + chr4_1:46171125-46171144 None:intergenic 35.0%
CTACTGAGTAGTAGTATGAA+CGG + chr4_1:46171330-46171349 None:intergenic 35.0%
TGAATACTGGCAACAATTCA+TGG + chr4_1:46171411-46171430 None:intergenic 35.0%
AGGAAAATCGCAGAATAGAA+TGG + chr4_1:46169554-46169573 None:intergenic 35.0%
! TTTTCCTTATCCTCAAGTCA+TGG - chr4_1:46169567-46169586 Msa0550610:three_prime_UTR 35.0%
AAGAACGATGAAGAGAAGAA+GGG + chr4_1:46169602-46169621 None:intergenic 35.0%
AAAGAACGATGAAGAGAAGA+AGG + chr4_1:46169603-46169622 None:intergenic 35.0%
TCAATTGATGCTTCTTAGCA+CGG + chr4_1:46169819-46169838 None:intergenic 35.0%
!! TGCTAAGAAGCATCAATTGA+TGG - chr4_1:46169819-46169838 Msa0550610:CDS 35.0%
!!! GATTTTGATTGGAGAGAGAA+AGG - chr4_1:46169985-46170004 Msa0550610:intron 35.0%
TTGTGTTGGGTTTGTGATAA+TGG - chr4_1:46170114-46170133 Msa0550610:CDS 35.0%
ATTGTATGAGGTTCGACTTA+AGG - chr4_1:46170453-46170472 Msa0550610:intron 35.0%
!!! GAGTACATTTTAAAATCCGG+TGG - chr4_1:46170788-46170807 Msa0550610:CDS 35.0%
!!! GTACATTTTAAAATCCGGTG+GGG - chr4_1:46170790-46170809 Msa0550610:CDS 35.0%
GAAGAAGACTATCCTTATTC+TGG - chr4_1:46170821-46170840 Msa0550610:CDS 35.0%
!! ACCGTTTTTGACAAGATTAG+CGG + chr4_1:46170939-46170958 None:intergenic 35.0%
GTCTCTTTGAGCATATGTAT+GGG + chr4_1:46171124-46171143 None:intergenic 35.0%
AGTCTCTTTGAGCATATGTA+TGG + chr4_1:46171125-46171144 None:intergenic 35.0%
CTACTGAGTAGTAGTATGAA+CGG + chr4_1:46171330-46171349 None:intergenic 35.0%
TGAATACTGGCAACAATTCA+TGG + chr4_1:46171411-46171430 None:intergenic 35.0%
TCGCAGAATAGAATGGAAAG+TGG + chr4_1:46169547-46169566 None:intergenic 40.0%
TGATCCATGACTTGAGGATA+AGG + chr4_1:46169574-46169593 None:intergenic 40.0%
! TCTTTTCATCTTCTCCGTCT+CGG - chr4_1:46169618-46169637 Msa0550610:three_prime_UTR 40.0%
AGAAGATCCAATAATCCGAC+AGG - chr4_1:46169663-46169682 Msa0550610:three_prime_UTR 40.0%
TGGGAAGGTTTATTCTTCCA+AGG - chr4_1:46169750-46169769 Msa0550610:CDS 40.0%
CCTGTAATCATGTTCATCCT+TGG + chr4_1:46169770-46169789 None:intergenic 40.0%
CCAAGGATGAACATGATTAC+AGG - chr4_1:46169767-46169786 Msa0550610:CDS 40.0%
! GCATCAATTGATGGATCCTT+CGG - chr4_1:46169828-46169847 Msa0550610:CDS 40.0%
AGATTATCTGTGGGAAGAAC+CGG + chr4_1:46169958-46169977 None:intergenic 40.0%
! TGGTCCTGTGATAATGATTC+AGG - chr4_1:46170134-46170153 Msa0550610:CDS 40.0%
! GGTCCTGTGATAATGATTCA+GGG - chr4_1:46170135-46170154 Msa0550610:CDS 40.0%
TGTTGGAGTTTCAGTACAAC+CGG - chr4_1:46170171-46170190 Msa0550610:CDS 40.0%
! GCTAAGACTGACAAGTTTTC+CGG + chr4_1:46170226-46170245 None:intergenic 40.0%
! ACTTGTCGATTGTGATCATG+AGG - chr4_1:46170254-46170273 Msa0550610:CDS 40.0%
GCCGCTAATCTTGTCAAAAA+CGG - chr4_1:46170935-46170954 Msa0550610:intron 40.0%
CTTTAGCACTTACTAGCAAG+AGG + chr4_1:46170962-46170981 None:intergenic 40.0%
TGCTCAAAGAGACTAGATCA+TGG - chr4_1:46171131-46171150 Msa0550610:CDS 40.0%
! ACTAGATCATGGAGTGTTAC+TGG - chr4_1:46171142-46171161 Msa0550610:CDS 40.0%
CTTCATCCTAATAGGCGAAT+AGG + chr4_1:46171186-46171205 None:intergenic 40.0%
CTATTCGCCTATTAGGATGA+AGG - chr4_1:46171184-46171203 Msa0550610:CDS 40.0%
TGTAGGGGACGAAATATATG+CGG - chr4_1:46171275-46171294 Msa0550610:CDS 40.0%
TCGCAGAATAGAATGGAAAG+TGG + chr4_1:46169547-46169566 None:intergenic 40.0%
TGATCCATGACTTGAGGATA+AGG + chr4_1:46169574-46169593 None:intergenic 40.0%
! TCTTTTCATCTTCTCCGTCT+CGG - chr4_1:46169618-46169637 Msa0550610:three_prime_UTR 40.0%
AGAAGATCCAATAATCCGAC+AGG - chr4_1:46169663-46169682 Msa0550610:three_prime_UTR 40.0%
TGGGAAGGTTTATTCTTCCA+AGG - chr4_1:46169750-46169769 Msa0550610:CDS 40.0%
CCTGTAATCATGTTCATCCT+TGG + chr4_1:46169770-46169789 None:intergenic 40.0%
CCAAGGATGAACATGATTAC+AGG - chr4_1:46169767-46169786 Msa0550610:CDS 40.0%
! GCATCAATTGATGGATCCTT+CGG - chr4_1:46169828-46169847 Msa0550610:CDS 40.0%
AGATTATCTGTGGGAAGAAC+CGG + chr4_1:46169958-46169977 None:intergenic 40.0%
! TGGTCCTGTGATAATGATTC+AGG - chr4_1:46170134-46170153 Msa0550610:CDS 40.0%
! GGTCCTGTGATAATGATTCA+GGG - chr4_1:46170135-46170154 Msa0550610:CDS 40.0%
TGTTGGAGTTTCAGTACAAC+CGG - chr4_1:46170171-46170190 Msa0550610:CDS 40.0%
! GCTAAGACTGACAAGTTTTC+CGG + chr4_1:46170226-46170245 None:intergenic 40.0%
! ACTTGTCGATTGTGATCATG+AGG - chr4_1:46170254-46170273 Msa0550610:CDS 40.0%
GCCGCTAATCTTGTCAAAAA+CGG - chr4_1:46170935-46170954 Msa0550610:intron 40.0%
CTTTAGCACTTACTAGCAAG+AGG + chr4_1:46170962-46170981 None:intergenic 40.0%
TGCTCAAAGAGACTAGATCA+TGG - chr4_1:46171131-46171150 Msa0550610:CDS 40.0%
! ACTAGATCATGGAGTGTTAC+TGG - chr4_1:46171142-46171161 Msa0550610:CDS 40.0%
CTTCATCCTAATAGGCGAAT+AGG + chr4_1:46171186-46171205 None:intergenic 40.0%
CTATTCGCCTATTAGGATGA+AGG - chr4_1:46171184-46171203 Msa0550610:CDS 40.0%
TGTAGGGGACGAAATATATG+CGG - chr4_1:46171275-46171294 Msa0550610:CDS 40.0%
GGTTGCAATTGCGGTAAGTA+AGG + chr4_1:46169500-46169519 None:intergenic 45.0%
ATTGGATCTTCTCCTTCGTC+CGG + chr4_1:46169655-46169674 None:intergenic 45.0%
AGATCCAATAATCCGACAGG+TGG - chr4_1:46169666-46169685 Msa0550610:three_prime_UTR 45.0%
AATTCTCCGATCTTACTCCG+AGG - chr4_1:46169869-46169888 Msa0550610:CDS 45.0%
ATTCTCCGATCTTACTCCGA+GGG - chr4_1:46169870-46169889 Msa0550610:CDS 45.0%
AAACTCCCTCGGAGTAAGAT+CGG + chr4_1:46169878-46169897 None:intergenic 45.0%
!! GAGTTTCGTCAGAGCGTTTT+GGG - chr4_1:46169892-46169911 Msa0550610:CDS 45.0%
ATTATCTGTGGGAAGAACCG+GGG + chr4_1:46169956-46169975 None:intergenic 45.0%
GATTATCTGTGGGAAGAACC+GGG + chr4_1:46169957-46169976 None:intergenic 45.0%
GAGCCCTGAATCATTATCAC+AGG + chr4_1:46170141-46170160 None:intergenic 45.0%
ATAATGATTCAGGGCTCGTG+TGG - chr4_1:46170144-46170163 Msa0550610:CDS 45.0%
! GCACATCGATAGTGACTTGT+AGG - chr4_1:46170489-46170508 Msa0550610:intron 45.0%
ATAGTGTGATCCAGAGCAAC+CGG - chr4_1:46170718-46170737 Msa0550610:intron 45.0%
CCACGATCAGTACCAGAATA+AGG + chr4_1:46170836-46170855 None:intergenic 45.0%
!! CCTTATTCTGGTACTGATCG+TGG - chr4_1:46170833-46170852 Msa0550610:CDS 45.0%
TGACAAGATTAGCGGCAATC+TGG + chr4_1:46170931-46170950 None:intergenic 45.0%
! AGATCATGGAGTGTTACTGG+TGG - chr4_1:46171145-46171164 Msa0550610:CDS 45.0%
! GATCATGGAGTGTTACTGGT+GGG - chr4_1:46171146-46171165 Msa0550610:CDS 45.0%
TTACTGGTGGGATATGGATC+TGG - chr4_1:46171158-46171177 Msa0550610:CDS 45.0%
GGCTTCTCCTTCATCCTAAT+AGG + chr4_1:46171194-46171213 None:intergenic 45.0%
GGATGAAGGAGAAGCCATAT+TGG - chr4_1:46171198-46171217 Msa0550610:CDS 45.0%
AAAACTCATGGGGTGAGACT+TGG - chr4_1:46171228-46171247 Msa0550610:CDS 45.0%
AAACTCATGGGGTGAGACTT+GGG - chr4_1:46171229-46171248 Msa0550610:CDS 45.0%
GGTTGCAATTGCGGTAAGTA+AGG + chr4_1:46169500-46169519 None:intergenic 45.0%
ATTGGATCTTCTCCTTCGTC+CGG + chr4_1:46169655-46169674 None:intergenic 45.0%
AGATCCAATAATCCGACAGG+TGG - chr4_1:46169666-46169685 Msa0550610:three_prime_UTR 45.0%
AATTCTCCGATCTTACTCCG+AGG - chr4_1:46169869-46169888 Msa0550610:CDS 45.0%
ATTCTCCGATCTTACTCCGA+GGG - chr4_1:46169870-46169889 Msa0550610:CDS 45.0%
AAACTCCCTCGGAGTAAGAT+CGG + chr4_1:46169878-46169897 None:intergenic 45.0%
!! GAGTTTCGTCAGAGCGTTTT+GGG - chr4_1:46169892-46169911 Msa0550610:CDS 45.0%
ATTATCTGTGGGAAGAACCG+GGG + chr4_1:46169956-46169975 None:intergenic 45.0%
GATTATCTGTGGGAAGAACC+GGG + chr4_1:46169957-46169976 None:intergenic 45.0%
GAGCCCTGAATCATTATCAC+AGG + chr4_1:46170141-46170160 None:intergenic 45.0%
ATAATGATTCAGGGCTCGTG+TGG - chr4_1:46170144-46170163 Msa0550610:CDS 45.0%
! GCACATCGATAGTGACTTGT+AGG - chr4_1:46170489-46170508 Msa0550610:intron 45.0%
ATAGTGTGATCCAGAGCAAC+CGG - chr4_1:46170718-46170737 Msa0550610:intron 45.0%
CCACGATCAGTACCAGAATA+AGG + chr4_1:46170836-46170855 None:intergenic 45.0%
!! CCTTATTCTGGTACTGATCG+TGG - chr4_1:46170833-46170852 Msa0550610:CDS 45.0%
TGACAAGATTAGCGGCAATC+TGG + chr4_1:46170931-46170950 None:intergenic 45.0%
! AGATCATGGAGTGTTACTGG+TGG - chr4_1:46171145-46171164 Msa0550610:CDS 45.0%
! GATCATGGAGTGTTACTGGT+GGG - chr4_1:46171146-46171165 Msa0550610:CDS 45.0%
TTACTGGTGGGATATGGATC+TGG - chr4_1:46171158-46171177 Msa0550610:CDS 45.0%
GGCTTCTCCTTCATCCTAAT+AGG + chr4_1:46171194-46171213 None:intergenic 45.0%
GGATGAAGGAGAAGCCATAT+TGG - chr4_1:46171198-46171217 Msa0550610:CDS 45.0%
AAAACTCATGGGGTGAGACT+TGG - chr4_1:46171228-46171247 Msa0550610:CDS 45.0%
AAACTCATGGGGTGAGACTT+GGG - chr4_1:46171229-46171248 Msa0550610:CDS 45.0%
GTGCGATGATCCATGACTTG+AGG + chr4_1:46169580-46169599 None:intergenic 50.0%
TCGACCACCTGTCGGATTAT+TGG + chr4_1:46169673-46169692 None:intergenic 50.0%
TGGTCGACGATGAAGAAGTG+CGG - chr4_1:46169686-46169705 Msa0550610:exon 50.0%
! GACGATGAAGAAGTGCGGTT+GGG - chr4_1:46169691-46169710 Msa0550610:CDS 50.0%
ATGGATCCTTCGGCAGTTCA+CGG - chr4_1:46169838-46169857 Msa0550610:CDS 50.0%
!! GGAGTTTCGTCAGAGCGTTT+TGG - chr4_1:46169891-46169910 Msa0550610:CDS 50.0%
!!! CAGAGCGTTTTGGGATTGAG+AGG - chr4_1:46169901-46169920 Msa0550610:CDS 50.0%
!!! GTTTTGGGATTGAGAGGCGT+GGG - chr4_1:46169907-46169926 Msa0550610:CDS 50.0%
!!! TTTTGGGATTGAGAGGCGTG+GGG - chr4_1:46169908-46169927 Msa0550610:CDS 50.0%
GGGGCTGCATTAGCATCTTT+CGG + chr4_1:46169937-46169956 None:intergenic 50.0%
GAAAGATGCTAATGCAGCCC+CGG - chr4_1:46169936-46169955 Msa0550610:CDS 50.0%
AGTACAACCGGTGCACTTGA+AGG - chr4_1:46170183-46170202 Msa0550610:CDS 50.0%
TAGTGTGATCCAGAGCAACC+GGG - chr4_1:46170719-46170738 Msa0550610:intron 50.0%
! GGAGTGTTACTGGTGGGATA+TGG - chr4_1:46171152-46171171 Msa0550610:CDS 50.0%
CTGGAGCCTATTCGCCTATT+AGG - chr4_1:46171177-46171196 Msa0550610:CDS 50.0%
AACTCATGGGGTGAGACTTG+GGG - chr4_1:46171230-46171249 Msa0550610:CDS 50.0%
GGTGAGACTTGGGGAGAAAA+TGG - chr4_1:46171239-46171258 Msa0550610:CDS 50.0%
GGGACGAAATATATGCGGAG+TGG - chr4_1:46171280-46171299 Msa0550610:CDS 50.0%
! TATATGCGGAGTGGACTCCA+TGG - chr4_1:46171289-46171308 Msa0550610:CDS 50.0%
GGACTCCATGGTTTCTACTG+TGG - chr4_1:46171301-46171320 Msa0550610:CDS 50.0%
GTGCGATGATCCATGACTTG+AGG + chr4_1:46169580-46169599 None:intergenic 50.0%
TCGACCACCTGTCGGATTAT+TGG + chr4_1:46169673-46169692 None:intergenic 50.0%
TGGTCGACGATGAAGAAGTG+CGG - chr4_1:46169686-46169705 Msa0550610:exon 50.0%
! GACGATGAAGAAGTGCGGTT+GGG - chr4_1:46169691-46169710 Msa0550610:CDS 50.0%
ATGGATCCTTCGGCAGTTCA+CGG - chr4_1:46169838-46169857 Msa0550610:CDS 50.0%
!! GGAGTTTCGTCAGAGCGTTT+TGG - chr4_1:46169891-46169910 Msa0550610:CDS 50.0%
!!! CAGAGCGTTTTGGGATTGAG+AGG - chr4_1:46169901-46169920 Msa0550610:CDS 50.0%
!!! GTTTTGGGATTGAGAGGCGT+GGG - chr4_1:46169907-46169926 Msa0550610:CDS 50.0%
!!! TTTTGGGATTGAGAGGCGTG+GGG - chr4_1:46169908-46169927 Msa0550610:CDS 50.0%
GGGGCTGCATTAGCATCTTT+CGG + chr4_1:46169937-46169956 None:intergenic 50.0%
GAAAGATGCTAATGCAGCCC+CGG - chr4_1:46169936-46169955 Msa0550610:CDS 50.0%
AGTACAACCGGTGCACTTGA+AGG - chr4_1:46170183-46170202 Msa0550610:CDS 50.0%
TAGTGTGATCCAGAGCAACC+GGG - chr4_1:46170719-46170738 Msa0550610:intron 50.0%
! GGAGTGTTACTGGTGGGATA+TGG - chr4_1:46171152-46171171 Msa0550610:CDS 50.0%
CTGGAGCCTATTCGCCTATT+AGG - chr4_1:46171177-46171196 Msa0550610:CDS 50.0%
AACTCATGGGGTGAGACTTG+GGG - chr4_1:46171230-46171249 Msa0550610:CDS 50.0%
GGTGAGACTTGGGGAGAAAA+TGG - chr4_1:46171239-46171258 Msa0550610:CDS 50.0%
GGGACGAAATATATGCGGAG+TGG - chr4_1:46171280-46171299 Msa0550610:CDS 50.0%
! TATATGCGGAGTGGACTCCA+TGG - chr4_1:46171289-46171308 Msa0550610:CDS 50.0%
GGACTCCATGGTTTCTACTG+TGG - chr4_1:46171301-46171320 Msa0550610:CDS 50.0%
CTTCATCGTCGACCACCTGT+CGG + chr4_1:46169681-46169700 None:intergenic 55.0%
! CGACGATGAAGAAGTGCGGT+TGG - chr4_1:46169690-46169709 Msa0550610:CDS 55.0%
GTAACACCGTGAACTGCCGA+AGG + chr4_1:46169847-46169866 None:intergenic 55.0%
ACGCTCTGACGAAACTCCCT+CGG + chr4_1:46169889-46169908 None:intergenic 55.0%
!!! CGTTTTGGGATTGAGAGGCG+TGG - chr4_1:46169906-46169925 Msa0550610:CDS 55.0%
AGGGCTCGTGTGGATCATGT+TGG - chr4_1:46170154-46170173 Msa0550610:CDS 55.0%
GTGAGCACCTTCAAGTGCAC+CGG + chr4_1:46170193-46170212 None:intergenic 55.0%
GGTGCTCACTTTCTCTCGAC+CGG - chr4_1:46170204-46170223 Msa0550610:CDS 55.0%
TCACAAGAACCCGGTTGCTC+TGG + chr4_1:46170731-46170750 None:intergenic 55.0%
CAACCGGGTTCTTGTGATGC+CGG - chr4_1:46170734-46170753 Msa0550610:intron 55.0%
AACCGGGTTCTTGTGATGCC+GGG - chr4_1:46170735-46170754 Msa0550610:intron 55.0%
TCTTGTGATGCCGGGTGCAA+TGG - chr4_1:46170743-46170762 Msa0550610:intron 55.0%
CATCAGACCACCATTGCACC+CGG + chr4_1:46170756-46170775 None:intergenic 55.0%
GGCAGCCACAGTAGAAACCA+TGG + chr4_1:46171309-46171328 None:intergenic 55.0%
CTTCATCGTCGACCACCTGT+CGG + chr4_1:46169681-46169700 None:intergenic 55.0%
! CGACGATGAAGAAGTGCGGT+TGG - chr4_1:46169690-46169709 Msa0550610:CDS 55.0%
GTAACACCGTGAACTGCCGA+AGG + chr4_1:46169847-46169866 None:intergenic 55.0%
ACGCTCTGACGAAACTCCCT+CGG + chr4_1:46169889-46169908 None:intergenic 55.0%
!!! CGTTTTGGGATTGAGAGGCG+TGG - chr4_1:46169906-46169925 Msa0550610:CDS 55.0%
AGGGCTCGTGTGGATCATGT+TGG - chr4_1:46170154-46170173 Msa0550610:CDS 55.0%
GTGAGCACCTTCAAGTGCAC+CGG + chr4_1:46170193-46170212 None:intergenic 55.0%
GGTGCTCACTTTCTCTCGAC+CGG - chr4_1:46170204-46170223 Msa0550610:CDS 55.0%
TCACAAGAACCCGGTTGCTC+TGG + chr4_1:46170731-46170750 None:intergenic 55.0%
CAACCGGGTTCTTGTGATGC+CGG - chr4_1:46170734-46170753 Msa0550610:intron 55.0%
AACCGGGTTCTTGTGATGCC+GGG - chr4_1:46170735-46170754 Msa0550610:intron 55.0%
TCTTGTGATGCCGGGTGCAA+TGG - chr4_1:46170743-46170762 Msa0550610:intron 55.0%
CATCAGACCACCATTGCACC+CGG + chr4_1:46170756-46170775 None:intergenic 55.0%
GGCAGCCACAGTAGAAACCA+TGG + chr4_1:46171309-46171328 None:intergenic 55.0%
CGGCGTAGAGAATGCCGAGA+CGG + chr4_1:46169635-46169654 None:intergenic 60.0%
CGTCTCGGCATTCTCTACGC+CGG - chr4_1:46169633-46169652 Msa0550610:three_prime_UTR 60.0%
GCATTCTCTACGCCGGACGA+AGG - chr4_1:46169640-46169659 Msa0550610:three_prime_UTR 60.0%
CACCCGGCATCACAAGAACC+CGG + chr4_1:46170740-46170759 None:intergenic 60.0%
TGTGATGCCGGGTGCAATGG+TGG - chr4_1:46170746-46170765 Msa0550610:intron 60.0%
TTCTTCGCGCATCACCCCAC+CGG + chr4_1:46170807-46170826 None:intergenic 60.0%
CGGCGTAGAGAATGCCGAGA+CGG + chr4_1:46169635-46169654 None:intergenic 60.0%
CGTCTCGGCATTCTCTACGC+CGG - chr4_1:46169633-46169652 Msa0550610:three_prime_UTR 60.0%
GCATTCTCTACGCCGGACGA+AGG - chr4_1:46169640-46169659 Msa0550610:three_prime_UTR 60.0%
CACCCGGCATCACAAGAACC+CGG + chr4_1:46170740-46170759 None:intergenic 60.0%
TGTGATGCCGGGTGCAATGG+TGG - chr4_1:46170746-46170765 Msa0550610:intron 60.0%
TTCTTCGCGCATCACCCCAC+CGG + chr4_1:46170807-46170826 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46169454 46171585 46169454 ID=Msa0550610;Name=Msa0550610
chr4_1 mRNA 46169454 46171585 46169454 ID=Msa0550610-mRNA-1;Parent=Msa0550610;Name=Msa0550610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=132|1|1|1|1|1|4|236|363
chr4_1 exon 46169454 46169967 46169454 ID=Msa0550610-mRNA-1:exon:12307;Parent=Msa0550610-mRNA-1
chr4_1 exon 46170071 46170317 46170071 ID=Msa0550610-mRNA-1:exon:12306;Parent=Msa0550610-mRNA-1
chr4_1 exon 46170764 46170883 46170764 ID=Msa0550610-mRNA-1:exon:12305;Parent=Msa0550610-mRNA-1
chr4_1 exon 46171007 46171585 46171007 ID=Msa0550610-mRNA-1:exon:12304;Parent=Msa0550610-mRNA-1
chr4_1 five_prime_UTR 46171454 46171585 46171454 ID=Msa0550610-mRNA-1:five_prime_utr;Parent=Msa0550610-mRNA-1
chr4_1 CDS 46171007 46171453 46171007 ID=Msa0550610-mRNA-1:cds;Parent=Msa0550610-mRNA-1
chr4_1 CDS 46170764 46170883 46170764 ID=Msa0550610-mRNA-1:cds;Parent=Msa0550610-mRNA-1
chr4_1 CDS 46170071 46170317 46170071 ID=Msa0550610-mRNA-1:cds;Parent=Msa0550610-mRNA-1
chr4_1 CDS 46169690 46169967 46169690 ID=Msa0550610-mRNA-1:cds;Parent=Msa0550610-mRNA-1
chr4_1 three_prime_UTR 46169454 46169689 46169454 ID=Msa0550610-mRNA-1:three_prime_utr;Parent=Msa0550610-mRNA-1
Gene Sequence

>Msa0550610

ATGGATCATCGCACCCTTCTTCTCTTCATCGTTCTTTTCATCTTCTCCGTCTCGGCATTCTCTACGCCGGACGAAGGAGAAGATCCAATAATCCGACAGGTGGTCGACGATGAAGAAGTGCGGTTGGGAGCAGAGCATCACTTTAACCTATTTAAACATAAGTTTGGGAAGGTTTATTCTTCCAAGGATGAACATGATTACAGGTTTAAAATCTTCAAGTCTAATCTGAACCGTGCTAAGAAGCATCAATTGATGGATCCTTCGGCAGTTCACGGTGTTACGAAATTCTCCGATCTTACTCCGAGGGAGTTTCGTCAGAGCGTTTTGGGATTGAGAGGCGTGGGGTTGCCGAAAGATGCTAATGCAGCCCCGGTTCTTCCCACAGATAATCTTCCAAAAGATTTTGATTGGAGAGAGAAAGGAGCAGTTACTGCTGTTAAAAATCAGGGCTCGTGTGGATCATGTTGGAGTTTCAGTACAACCGGTGCACTTGAAGGTGCTCACTTTCTCTCGACCGGAAAACTTGTCAGTCTTAGCGAGCAACAACTTGTCGATTGTGATCATGAGTGTGATCCAGAGCAACCGGGTTCTTGTGATGCCGGGTGCAATGGTGGTCTGATGAATAGTGCTTTTGAGTACATTTTAAAATCCGGTGGGGTGATGCGCGAAGAAGACTATCCTTATTCTGGTACTGATCGTGGAGCATGCAAGTTTGACAAGAAAAAAATTGCAGCATCAGTTGCAAATTTCAGCGTTGTTTCACTTGATGAAGACCAGATTGCCGCTAATCTTGTCAAAAACGGTCCTCTTGCTATTGCCTTAAATGCAGTATATATGCAAACATACATTGGAGGAGTATCATGCCCATACATATGCTCAAAGAGACTAGATCATGGAGTGTTACTGGTGGGATATGGATCTGGAGCCTATTCGCCTATTAGGATGAAGGAGAAGCCATATTGGATAATTAAAAACTCATGGGGTGAGACTTGGGGAGAAAATGGATACTACAAAATATGTAGGGGACGAAATATATGCGGAGTGGACTCCATGGTTTCTACTGTGGCTGCCGTTCATACTACTACTCAGTAG
Protein sequence

>Msa0550610

MDHRTLLLFIVLFIFSVSAFSTPDEGEDPIIRQVVDDEEVRLGAEHHFNLFKHKFGKVYSSKDEHDYRFKIFKSNLNRAKKHQLMDPSAVHGVTKFSDLTPREFRQSVLGLRGVGLPKDANAAPVLPTDNLPKDFDWREKGAVTAVKNQGSCGSCWSFSTTGALEGAHFLSTGKLVSLSEQQLVDCDHECDPEQPGSCDAGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGACKFDKKKIAASVANFSVVSLDEDQIAANLVKNGPLAIALNAVYMQTYIGGVSCPYICSKRLDHGVLLVGYGSGAYSPIRMKEKPYWIIKNSWGETWGENGYYKICRGRNICGVDSMVSTVAAVHTTTQ*