AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606080 MtrunA17_Chr4g0035551 97.514 362 9 0 1 362 1 362 0.0 744
Msa0606080 MtrunA17_Chr1g0155781 70.652 368 96 6 1 360 1 364 0.0 535
Msa0606080 MtrunA17_Chr4g0036281 67.935 368 76 7 1 363 1 331 7.95e-177 494
Msa0606080 MtrunA17_Chr4g0036731 68.681 364 70 7 3 363 5 327 1.19e-176 493
Msa0606080 MtrunA17_Chr4g0037291 67.956 362 78 6 4 363 47 372 2.09e-176 494
Msa0606080 MtrunA17_Chr1g0199131 54.318 359 153 6 10 360 15 370 2.33e-142 409
Msa0606080 MtrunA17_Chr1g0208261 42.667 300 146 7 50 341 94 375 7.04e-68 222
Msa0606080 MtrunA17_Chr4g0070441 38.356 365 185 11 8 355 6 347 7.36e-67 214
Msa0606080 MtrunA17_Chr4g0041061 38.310 355 178 13 5 348 12 336 2.36e-66 213
Msa0606080 MtrunA17_Chr0c27g0493921 38.567 363 183 11 8 353 6 345 4.17e-66 213
Msa0606080 MtrunA17_Chr4g0024411 40.063 317 152 10 54 353 44 339 1.63e-65 211
Msa0606080 MtrunA17_Chr4g0040881 39.634 328 167 12 32 348 29 336 1.76e-65 211
Msa0606080 MtrunA17_Chr4g0041081 38.438 333 174 12 32 353 29 341 3.28e-64 207
Msa0606080 MtrunA17_Chr3g0134231 36.676 349 186 10 5 341 16 341 5.06e-64 211
Msa0606080 MtrunA17_Chr5g0405751 39.252 321 166 11 45 353 37 340 1.36e-63 206
Msa0606080 MtrunA17_Chr4g0053311 39.496 357 154 14 5 341 7 321 1.42e-63 206
Msa0606080 MtrunA17_Chr4g0040851 34.270 356 206 10 5 353 22 356 1.13e-62 204
Msa0606080 MtrunA17_Chr3g0144281 38.291 316 167 10 48 353 47 344 2.65e-62 203
Msa0606080 MtrunA17_Chr4g0041481 37.107 318 175 8 38 348 32 331 4.44e-62 202
Msa0606080 MtrunA17_Chr4g0041521 37.417 302 166 7 54 348 46 331 8.91e-62 201
Msa0606080 MtrunA17_Chr4g0060251 39.228 311 163 9 54 353 46 341 4.24e-61 199
Msa0606080 MtrunA17_Chr3g0142071 37.730 326 160 12 48 353 50 352 7.48e-59 197
Msa0606080 MtrunA17_Chr4g0041471 35.831 307 169 9 54 348 43 333 1.16e-57 191
Msa0606080 MtrunA17_Chr3g0116551 37.458 299 158 8 63 348 54 336 1.28e-57 191
Msa0606080 MtrunA17_Chr2g0315491 37.417 302 168 6 54 348 45 332 1.38e-57 190
Msa0606080 MtrunA17_Chr4g0058081 38.033 305 157 10 58 348 49 335 4.44e-56 187
Msa0606080 MtrunA17_Chr8g0379151 33.962 371 197 14 4 352 24 368 1.98e-55 186
Msa0606080 MtrunA17_Chr2g0325121 35.000 320 180 8 48 359 39 338 1.24e-54 182
Msa0606080 MtrunA17_Chr1g0153011 37.037 351 154 13 9 341 21 322 3.15e-54 184
Msa0606080 MtrunA17_Chr2g0283901 35.826 321 172 11 48 353 51 352 3.61e-54 185
Msa0606080 MtrunA17_Chr2g0283741 32.258 372 196 14 8 350 8 352 5.96e-54 182
Msa0606080 MtrunA17_Chr2g0319991 36.336 333 179 14 41 358 30 344 2.32e-52 177
Msa0606080 MtrunA17_Chr2g0283671 41.629 221 111 5 122 341 5 208 1.27e-50 169
Msa0606080 MtrunA17_Chr7g0248391 32.288 319 179 9 42 348 36 329 2.02e-46 161
Msa0606080 MtrunA17_Chr2g0311471 32.086 374 197 15 4 353 2 342 2.26e-46 161
Msa0606080 MtrunA17_Chr2g0311381 32.051 390 196 17 1 359 1 352 3.21e-43 153
Msa0606080 MtrunA17_Chr7g0248811 31.230 317 186 8 42 348 33 327 6.15e-43 152
Msa0606080 MtrunA17_Chr1g0156161 40.991 222 111 7 129 347 47 251 1.17e-40 144
Msa0606080 MtrunA17_Chr2g0311391 29.095 409 202 16 4 362 2 372 2.77e-39 143
Msa0606080 MtrunA17_Chr8g0379671 48.529 136 54 4 172 306 23 143 2.67e-37 132
Msa0606080 MtrunA17_Chr2g0283751 30.888 259 152 7 6 256 12 251 2.60e-34 128
Msa0606080 MtrunA17_Chr7g0271031 29.861 288 155 14 95 353 110 379 1.32e-23 100
Msa0606080 MtrunA17_Chr7g0271041 28.671 286 161 12 95 353 66 335 1.47e-22 97.4
Msa0606080 MtrunA17_Chr1g0156771 46.154 117 50 5 126 239 50 156 1.06e-21 90.5
Msa0606080 MtrunA17_Chr2g0311091 32.292 192 102 7 7 181 4 184 7.30e-20 86.3
Msa0606080 MtrunA17_Chr2g0283661 36.879 141 79 3 54 184 39 179 2.54e-19 86.7
Msa0606080 MtrunA17_Chr2g0283661 34.746 118 69 3 244 360 161 271 9.48e-14 70.9
Msa0606080 MtrunA17_Chr7g0248421 32.258 155 91 3 155 307 57 199 8.22e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606080 AT2G21430.1 73.889 360 91 3 1 358 1 359 0.0 562
Msa0606080 AT4G39090.1 72.404 366 97 3 1 362 1 366 0.0 556
Msa0606080 AT4G16190.1 67.914 374 108 5 1 363 1 373 0.0 512
Msa0606080 AT3G54940.2 58.726 361 132 7 6 356 9 362 2.52e-154 439
Msa0606080 AT3G54940.3 54.182 275 110 6 6 271 9 276 1.62e-100 299
Msa0606080 AT5G60360.1 39.640 333 173 9 31 353 39 353 1.07e-67 217
Msa0606080 AT3G45310.1 38.764 356 183 11 10 348 11 348 2.11e-67 216
Msa0606080 AT3G19400.1 39.879 331 165 11 36 353 36 345 5.57e-67 216
Msa0606080 AT5G60360.3 40.061 327 168 9 31 347 39 347 1.08e-66 215
Msa0606080 AT5G60360.2 39.877 326 168 9 31 346 39 346 3.27e-66 213
Msa0606080 AT3G45310.2 38.418 354 183 11 10 346 11 346 5.36e-66 213
Msa0606080 AT3G19390.1 38.227 361 182 12 8 353 8 342 4.08e-65 213
Msa0606080 AT1G47128.1 40.541 296 156 5 50 341 54 333 1.14e-64 213
Msa0606080 AT1G09850.1 39.198 324 166 11 48 359 32 336 2.20e-64 211
Msa0606080 AT1G20850.1 38.801 317 166 8 48 353 51 350 9.33e-64 207
Msa0606080 AT5G45890.1 34.986 363 193 10 1 348 3 337 3.77e-63 205
Msa0606080 AT5G43060.1 41.844 282 143 7 64 341 70 334 9.77e-63 207
Msa0606080 AT1G29090.1 37.466 363 177 14 6 348 14 346 1.82e-62 204
Msa0606080 AT1G06260.1 38.154 325 160 13 45 353 40 339 4.68e-62 202
Msa0606080 AT3G43960.1 40.956 293 152 7 56 341 49 327 7.59e-62 202
Msa0606080 AT4G36880.1 39.446 289 148 6 64 341 69 341 2.17e-60 199
Msa0606080 AT4G35350.1 36.709 316 173 8 48 353 51 349 2.77e-60 198
Msa0606080 AT4G23520.1 34.711 363 194 14 9 353 9 346 3.08e-59 195
Msa0606080 AT3G48340.1 40.000 295 149 8 58 341 47 324 1.38e-58 194
Msa0606080 AT2G27420.1 36.593 317 161 11 54 348 41 339 1.20e-57 191
Msa0606080 AT5G50260.1 39.423 312 144 11 58 348 47 334 6.57e-56 187
Msa0606080 AT1G29080.1 36.943 314 168 9 54 353 45 342 2.29e-54 182
Msa0606080 AT2G34080.1 33.058 363 195 13 5 348 3 336 3.03e-54 182
Msa0606080 AT3G48350.1 34.857 350 187 11 7 342 3 325 3.66e-54 182
Msa0606080 AT3G49340.1 34.505 313 172 11 54 351 41 335 1.20e-52 178
Msa0606080 AT4G11320.2 34.431 334 182 9 29 348 41 351 1.25e-51 176
Msa0606080 AT4G11320.1 34.431 334 182 9 29 348 41 351 1.25e-51 176
Msa0606080 AT4G11310.1 32.312 359 204 10 6 348 9 344 3.24e-51 175
Msa0606080 AT3G19400.2 39.431 246 133 6 36 276 36 270 1.97e-50 171
Msa0606080 AT4G35350.2 35.622 233 137 4 48 276 51 274 8.14e-45 156
Msa0606080 AT1G29110.1 32.476 311 165 9 54 348 44 325 7.09e-43 152
Msa0606080 AT3G48350.2 32.787 305 155 10 7 287 3 281 1.77e-38 139
Msa0606080 AT1G02305.1 30.556 288 151 15 95 352 69 337 6.18e-23 99.0
Msa0606080 AT4G01610.1 29.560 318 169 14 61 349 40 331 7.25e-23 98.6
Msa0606080 AT4G01610.2 29.245 318 170 14 61 349 40 331 9.67e-22 95.5
Msa0606080 AT1G02300.1 27.597 308 154 17 95 352 66 354 3.67e-18 85.5

Find 99 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATATATACTGCATTTA+AGG 0.130654 4_2:-52178817 None:intergenic
AACCTATTTAAACATAAGTT+TGG 0.234066 4_2:+52177489 Msa0606080:CDS
TCGACCACCTGTCGGATTAT+TGG 0.251997 4_2:-52177429 None:intergenic
TCCCAAACTTATGTTTAAAT+AGG 0.268902 4_2:-52177491 None:intergenic
CCAAGGATGAACATGATTAC+AGG 0.304516 4_2:+52177526 Msa0606080:CDS
GGTGAGACTTGGGGAGAAAA+TGG 0.310928 4_2:+52178981 Msa0606080:CDS
CTGGAGCCTATTCGCCTATT+AGG 0.320950 4_2:+52178919 Msa0606080:CDS
GGAGTTTCGTCAGAGCGTTT+TGG 0.321592 4_2:+52177650 Msa0606080:CDS
GGGGCTGCATTTGCATCTTT+CGG 0.325671 4_2:-52177693 None:intergenic
TGAATACTGGCAACAATTCA+TGG 0.349199 4_2:-52179146 None:intergenic
GAAGAAGACTATCCTTATTC+TGG 0.363696 4_2:+52178562 Msa0606080:CDS
AGATTATCTGTCGGAAGAAT+CGG 0.365413 4_2:-52177714 None:intergenic
CCACGATCAGTACCAGAATA+AGG 0.365501 4_2:-52178574 None:intergenic
ACTAGATCATGGAGTGTTAC+TGG 0.371273 4_2:+52178884 Msa0606080:CDS
ACCTATTTAAACATAAGTTT+GGG 0.393244 4_2:+52177490 Msa0606080:CDS
AGTCTCTTTGAGCATATGTA+TGG 0.401014 4_2:-52178864 None:intergenic
GGCTTCTCCTTCATCCTAAT+AGG 0.407412 4_2:-52178933 None:intergenic
TCACAAGAACCCGGTTGCTC+TGG 0.408096 4_2:-52178469 None:intergenic
GGAGTGTTACTGGTGGGATA+TGG 0.410428 4_2:+52178894 Msa0606080:CDS
CCACATTAAAATATGAATAC+TGG 0.419218 4_2:-52179159 None:intergenic
GGATGAAGGAGAAGCCATAT+TGG 0.423435 4_2:+52178940 Msa0606080:CDS
TGCTAAGAAGCATCAATTGA+TGG 0.425569 4_2:+52177578 Msa0606080:CDS
GATTATCTGTCGGAAGAATC+GGG 0.426123 4_2:-52177713 None:intergenic
CTTCATCCTAATAGGCGAAT+AGG 0.432818 4_2:-52178925 None:intergenic
TGACAAGATTAGCGGCAATC+TGG 0.437809 4_2:-52178669 None:intergenic
CAACCGGGTTCTTGTGATGC+CGG 0.438520 4_2:+52178475 Msa0606080:CDS
AACAACAATTTATAGATGTA+TGG 0.449877 4_2:+52179246 Msa0606080:three_prime_UTR
ATAGTGTGATCCAGAGCAAC+CGG 0.450276 4_2:+52178459 Msa0606080:intron
TCTTGTGATGCCGGGTGCAA+TGG 0.456716 4_2:+52178484 Msa0606080:CDS
CCTGTAATCATGTTCATCCT+TGG 0.456777 4_2:-52177526 None:intergenic
AAAACTCATGGGGTGAGACT+TGG 0.466256 4_2:+52178970 Msa0606080:CDS
GCATCAATTGATGGATCCTT+CGG 0.466749 4_2:+52177587 Msa0606080:CDS
TGTTGGAGTTTCAGTACAAC+CGG 0.469204 4_2:+52177912 Msa0606080:CDS
ATGGATCCTTCGGCGGTTCA+CGG 0.470073 4_2:+52177597 Msa0606080:CDS
AAACTCATGGGGTGAGACTT+GGG 0.470356 4_2:+52178971 Msa0606080:CDS
GGTTGCAATTGCGGTAAGTA+AGG 0.473415 4_2:-52177256 None:intergenic
ATGGATACTACAAAATATGC+AGG 0.476628 4_2:+52179000 Msa0606080:CDS
TCTTCCGACAGATAATCTTC+CGG 0.486877 4_2:+52177719 Msa0606080:CDS
TGGAAAATCGCAGAATAGAA+TGG 0.491231 4_2:-52177310 None:intergenic
AACCGGGTTCTTGTGATGCC+GGG 0.494687 4_2:+52178476 Msa0606080:CDS
ATTGGATCTTCTCCTTCGTC+CGG 0.505970 4_2:-52177411 None:intergenic
TCTCTCCAATCAAAATCCTC+CGG 0.506268 4_2:-52177738 None:intergenic
TTACTGGTGGGATATGGATC+TGG 0.507620 4_2:+52178900 Msa0606080:CDS
TCAATTGATGCTTCTTAGCA+CGG 0.511562 4_2:-52177575 None:intergenic
GACGATGAAGAAGTGCGGTT+GGG 0.513257 4_2:+52177450 Msa0606080:CDS
TGGGAAGGTTTATTCTTCCA+AGG 0.519917 4_2:+52177509 Msa0606080:CDS
GGTGCTCACTTTCTCTCGAC+CGG 0.523916 4_2:+52177945 Msa0606080:CDS
ATATATAGAGGTTGCAATTG+CGG 0.543125 4_2:-52177265 None:intergenic
CCTTATTCTGGTACTGATCG+TGG 0.543158 4_2:+52178574 Msa0606080:CDS
CGACGATGAAGAAGTGCGGT+TGG 0.543666 4_2:+52177449 Msa0606080:CDS
CTTTAGCACTTACTAGCAAG+AGG 0.547021 4_2:-52178700 None:intergenic
ACCGTTCTTGACAAGATTAG+CGG 0.547122 4_2:-52178677 None:intergenic
CTTCATCGTCGACCACCTGT+CGG 0.547560 4_2:-52177437 None:intergenic
AGTACAACCGGTGCACTTGA+AGG 0.552820 4_2:+52177924 Msa0606080:CDS
AAACTCCCTCGGAGTAAGAT+CGG 0.553683 4_2:-52177634 None:intergenic
TTCTTCGCGCATCACCCCAC+CGG 0.555594 4_2:-52178545 None:intergenic
CATCAGACCACCATTGCACC+CGG 0.562811 4_2:-52178494 None:intergenic
CTATTCGCCTATTAGGATGA+AGG 0.564118 4_2:+52178926 Msa0606080:CDS
AGAAGATCCAATAATCCGAC+AGG 0.566385 4_2:+52177422 Msa0606080:CDS
TGCTCAAAGAGACTAGATCA+TGG 0.566764 4_2:+52178873 Msa0606080:CDS
TGATCCATGACTTGAGGATG+TGG 0.567353 4_2:-52177330 None:intergenic
GTCTCTTTGAGCATATGTAT+GGG 0.587803 4_2:-52178863 None:intergenic
ATTTAAACATAAGTTTGGGA+AGG 0.587990 4_2:+52177494 Msa0606080:CDS
GCCGCTAATCTTGTCAAGAA+CGG 0.589186 4_2:+52178676 Msa0606080:CDS
GTGAGCACCTTCAAGTGCAC+CGG 0.592969 4_2:-52177931 None:intergenic
AACTCATGGGGTGAGACTTG+GGG 0.593059 4_2:+52178972 Msa0606080:CDS
ACTTGTCGATTGTGATCATG+AGG 0.595475 4_2:+52177995 Msa0606080:CDS
TGGATACTACAAAATATGCA+GGG 0.599253 4_2:+52179001 Msa0606080:CDS
GTATATATGCAAACATACAT+TGG 0.601664 4_2:+52178828 Msa0606080:CDS
TGTGATGCCGGGTGCAATGG+TGG 0.601772 4_2:+52178487 Msa0606080:CDS
TATATGCGGAGTGGACTCCA+TGG 0.603926 4_2:+52179031 Msa0606080:CDS
ACGCTCTGACGAAACTCCCT+CGG 0.605558 4_2:-52177645 None:intergenic
ATTCTCCGATCTTACTCCGA+GGG 0.607597 4_2:+52177629 Msa0606080:CDS
CACCCGGCATCACAAGAACC+CGG 0.609271 4_2:-52178478 None:intergenic
TATATGCAAACATACATTGG+AGG 0.612222 4_2:+52178831 Msa0606080:CDS
CGGCGTAGAGAATGCCGAGA+CGG 0.623788 4_2:-52177391 None:intergenic
CTACTGAGTAGTAGTATGAA+CGG 0.624053 4_2:-52179069 None:intergenic
GGACTCCATGGTTTCTACTG+TGG 0.626354 4_2:+52179043 Msa0606080:CDS
TCGCAGAATAGAATGGAAAG+TGG 0.626877 4_2:-52177303 None:intergenic
TCCTCCGGAAGATTATCTGT+CGG 0.627162 4_2:-52177723 None:intergenic
TCAATTGATGGATCCTTCGG+CGG 0.633662 4_2:+52177590 Msa0606080:CDS
GATCATGGAGTGTTACTGGT+GGG 0.636411 4_2:+52178888 Msa0606080:CDS
GTAACACCGTGAACCGCCGA+AGG 0.638844 4_2:-52177603 None:intergenic
TAGTGTGATCCAGAGCAACC+GGG 0.639888 4_2:+52178460 Msa0606080:intron
AGGGCTCGTGTGGATCATGT+TGG 0.640660 4_2:+52177895 Msa0606080:intron
GCATTCTCTACGCCGGACGA+AGG 0.643570 4_2:+52177399 Msa0606080:CDS
ATCATGAATTAGGGCTCGTG+TGG 0.646039 4_2:+52177885 Msa0606080:intron
TCCGACAGATAATCTTCCGG+AGG 0.646681 4_2:+52177722 Msa0606080:CDS
GTGCGATGATCCATGACTTG+AGG 0.654706 4_2:-52177336 None:intergenic
GGCAGCCACAGTAGAAACCA+TGG 0.655273 4_2:-52179048 None:intergenic
CGTCTCGGCATTCTCTACGC+CGG 0.661935 4_2:+52177392 Msa0606080:CDS
AGATCATGGAGTGTTACTGG+TGG 0.667806 4_2:+52178887 Msa0606080:CDS
ATTATCTGTCGGAAGAATCG+GGG 0.668335 4_2:-52177712 None:intergenic
GGATACTACAAAATATGCAG+GGG 0.670950 4_2:+52179002 Msa0606080:CDS
AGATCCAATAATCCGACAGG+TGG 0.675027 4_2:+52177425 Msa0606080:CDS
TGCAGGGGACGAAATATATG+CGG 0.679393 4_2:+52179017 Msa0606080:CDS
GGGACGAAATATATGCGGAG+TGG 0.687467 4_2:+52179022 Msa0606080:CDS
AATTCTCCGATCTTACTCCG+AGG 0.702571 4_2:+52177628 Msa0606080:CDS
TGGTCGACGATGAAGAAGTG+CGG 0.727360 4_2:+52177445 Msa0606080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATGTTATCTAAAT+TGG + chr4_2:52178412-52178431 Msa0606080:intron 10.0%
!!! ATATGATTCTATTTTAAAAA+TGG + chr4_2:52179298-52179317 Msa0606080:three_prime_UTR 10.0%
!!! TATGATTCTATTTTAAAAAT+GGG + chr4_2:52179299-52179318 Msa0606080:three_prime_UTR 10.0%
!! TTATTATATGTTATCTAAAT+TGG + chr4_2:52178412-52178431 Msa0606080:intron 10.0%
!!! ATATGATTCTATTTTAAAAA+TGG + chr4_2:52179298-52179317 Msa0606080:three_prime_UTR 10.0%
!!! TATGATTCTATTTTAAAAAT+GGG + chr4_2:52179299-52179318 Msa0606080:three_prime_UTR 10.0%
!!! GAGTTTTATTTTATATATAG+AGG - chr4_2:52177280-52177299 None:intergenic 15.0%
!! GATATACTATTAATTACAAA+GGG - chr4_2:52178043-52178062 None:intergenic 15.0%
!! AGATATACTATTAATTACAA+AGG - chr4_2:52178044-52178063 None:intergenic 15.0%
!! ATCTTTACAGAATTATTTAT+TGG + chr4_2:52178346-52178365 Msa0606080:intron 15.0%
!! TCTTTACAGAATTATTTATT+GGG + chr4_2:52178347-52178366 Msa0606080:intron 15.0%
!!! GAGTTTTATTTTATATATAG+AGG - chr4_2:52177280-52177299 None:intergenic 15.0%
!! GATATACTATTAATTACAAA+GGG - chr4_2:52178043-52178062 None:intergenic 15.0%
!! AGATATACTATTAATTACAA+AGG - chr4_2:52178044-52178063 None:intergenic 15.0%
!! ATCTTTACAGAATTATTTAT+TGG + chr4_2:52178346-52178365 Msa0606080:intron 15.0%
!! TCTTTACAGAATTATTTATT+GGG + chr4_2:52178347-52178366 Msa0606080:intron 15.0%
!! AACCTATTTAAACATAAGTT+TGG + chr4_2:52177489-52177508 Msa0606080:CDS 20.0%
!! ACCTATTTAAACATAAGTTT+GGG + chr4_2:52177490-52177509 Msa0606080:CDS 20.0%
!!! AAAACAAATTTTGATTGTGT+TGG + chr4_2:52177855-52177874 Msa0606080:intron 20.0%
!!! AAACAAATTTTGATTGTGTT+GGG + chr4_2:52177856-52177875 Msa0606080:intron 20.0%
!! ATTAATTACAAAGGGAAAAT+AGG - chr4_2:52178035-52178054 None:intergenic 20.0%
!! AATTAATAGTATATCTGCTA+AGG + chr4_2:52178048-52178067 Msa0606080:intron 20.0%
!! TATCTGATATTAATCTTTCT+AGG + chr4_2:52178125-52178144 Msa0606080:intron 20.0%
!! ATACAATATCTAATAGAGTT+TGG - chr4_2:52178181-52178200 None:intergenic 20.0%
!!! AAATGCTAACTTGTAATATT+TGG + chr4_2:52178370-52178389 Msa0606080:intron 20.0%
!!! AATGCTAACTTGTAATATTT+GGG + chr4_2:52178371-52178390 Msa0606080:intron 20.0%
!! ATATGTTATCTAAATTGGTT+TGG + chr4_2:52178417-52178436 Msa0606080:intron 20.0%
!!! TTTGAGTACATTTTAAAATC+CGG + chr4_2:52178526-52178545 Msa0606080:CDS 20.0%
!!! GAGTTTTTAATTATCCAATA+TGG - chr4_2:52178957-52178976 None:intergenic 20.0%
!! ATTGGATAATTAAAAACTCA+TGG + chr4_2:52178958-52178977 Msa0606080:CDS 20.0%
!! TTGGATAATTAAAAACTCAT+GGG + chr4_2:52178959-52178978 Msa0606080:CDS 20.0%
!!! CTGTTGTTTATTTTATATTG+TGG + chr4_2:52179119-52179138 Msa0606080:three_prime_UTR 20.0%
!! AACAACAATTTATAGATGTA+TGG + chr4_2:52179246-52179265 Msa0606080:three_prime_UTR 20.0%
!! AACCTATTTAAACATAAGTT+TGG + chr4_2:52177489-52177508 Msa0606080:CDS 20.0%
!! ACCTATTTAAACATAAGTTT+GGG + chr4_2:52177490-52177509 Msa0606080:CDS 20.0%
!!! AAAACAAATTTTGATTGTGT+TGG + chr4_2:52177855-52177874 Msa0606080:intron 20.0%
!!! AAACAAATTTTGATTGTGTT+GGG + chr4_2:52177856-52177875 Msa0606080:intron 20.0%
!! ATTAATTACAAAGGGAAAAT+AGG - chr4_2:52178035-52178054 None:intergenic 20.0%
!! AATTAATAGTATATCTGCTA+AGG + chr4_2:52178048-52178067 Msa0606080:intron 20.0%
!! TATCTGATATTAATCTTTCT+AGG + chr4_2:52178125-52178144 Msa0606080:intron 20.0%
!! ATACAATATCTAATAGAGTT+TGG - chr4_2:52178181-52178200 None:intergenic 20.0%
!!! AAATGCTAACTTGTAATATT+TGG + chr4_2:52178370-52178389 Msa0606080:intron 20.0%
!!! AATGCTAACTTGTAATATTT+GGG + chr4_2:52178371-52178390 Msa0606080:intron 20.0%
!! ATATGTTATCTAAATTGGTT+TGG + chr4_2:52178417-52178436 Msa0606080:intron 20.0%
!!! TTTGAGTACATTTTAAAATC+CGG + chr4_2:52178526-52178545 Msa0606080:CDS 20.0%
!!! GAGTTTTTAATTATCCAATA+TGG - chr4_2:52178957-52178976 None:intergenic 20.0%
!! ATTGGATAATTAAAAACTCA+TGG + chr4_2:52178958-52178977 Msa0606080:CDS 20.0%
!! TTGGATAATTAAAAACTCAT+GGG + chr4_2:52178959-52178978 Msa0606080:CDS 20.0%
!!! CTGTTGTTTATTTTATATTG+TGG + chr4_2:52179119-52179138 Msa0606080:three_prime_UTR 20.0%
!! AACAACAATTTATAGATGTA+TGG + chr4_2:52179246-52179265 Msa0606080:three_prime_UTR 20.0%
! TCCCAAACTTATGTTTAAAT+AGG - chr4_2:52177494-52177513 None:intergenic 25.0%
! ATTTAAACATAAGTTTGGGA+AGG + chr4_2:52177494-52177513 Msa0606080:CDS 25.0%
! ACTCTATTAGATATTGTATG+AGG + chr4_2:52178182-52178201 Msa0606080:intron 25.0%
!! AGCAAATTTGAAACATGATT+AGG + chr4_2:52178278-52178297 Msa0606080:intron 25.0%
!! ATGCTAACTTGTAATATTTG+GGG + chr4_2:52178372-52178391 Msa0606080:intron 25.0%
!!! TTATCTAAATTGGTTTGGAT+TGG + chr4_2:52178422-52178441 Msa0606080:intron 25.0%
! TTGCATATATACTGCATTTA+AGG - chr4_2:52178820-52178839 None:intergenic 25.0%
! GTATATATGCAAACATACAT+TGG + chr4_2:52178828-52178847 Msa0606080:CDS 25.0%
! TGGATAATTAAAAACTCATG+GGG + chr4_2:52178960-52178979 Msa0606080:CDS 25.0%
! CCACATTAAAATATGAATAC+TGG - chr4_2:52179162-52179181 None:intergenic 25.0%
!!! CCAGTATTCATATTTTAATG+TGG + chr4_2:52179159-52179178 Msa0606080:three_prime_UTR 25.0%
! ACTAGATTAAGATTGAATTG+AGG - chr4_2:52177215-52177234 None:intergenic 25.0%
! TCCCAAACTTATGTTTAAAT+AGG - chr4_2:52177494-52177513 None:intergenic 25.0%
! ATTTAAACATAAGTTTGGGA+AGG + chr4_2:52177494-52177513 Msa0606080:CDS 25.0%
! ACTCTATTAGATATTGTATG+AGG + chr4_2:52178182-52178201 Msa0606080:intron 25.0%
!! AGCAAATTTGAAACATGATT+AGG + chr4_2:52178278-52178297 Msa0606080:intron 25.0%
!! ATGCTAACTTGTAATATTTG+GGG + chr4_2:52178372-52178391 Msa0606080:intron 25.0%
!!! TTATCTAAATTGGTTTGGAT+TGG + chr4_2:52178422-52178441 Msa0606080:intron 25.0%
! TTGCATATATACTGCATTTA+AGG - chr4_2:52178820-52178839 None:intergenic 25.0%
! GTATATATGCAAACATACAT+TGG + chr4_2:52178828-52178847 Msa0606080:CDS 25.0%
! TGGATAATTAAAAACTCATG+GGG + chr4_2:52178960-52178979 Msa0606080:CDS 25.0%
! CCACATTAAAATATGAATAC+TGG - chr4_2:52179162-52179181 None:intergenic 25.0%
!!! CCAGTATTCATATTTTAATG+TGG + chr4_2:52179159-52179178 Msa0606080:three_prime_UTR 25.0%
ATATATAGAGGTTGCAATTG+CGG - chr4_2:52177268-52177287 None:intergenic 30.0%
AGTTACTGCTGTTAAAAATC+AGG + chr4_2:52177770-52177789 Msa0606080:CDS 30.0%
!!! AGTACATTTTAAAATCCGGT+GGG + chr4_2:52178530-52178549 Msa0606080:CDS 30.0%
TATATGCAAACATACATTGG+AGG + chr4_2:52178831-52178850 Msa0606080:CDS 30.0%
ATGGATACTACAAAATATGC+AGG + chr4_2:52179000-52179019 Msa0606080:CDS 30.0%
TGGATACTACAAAATATGCA+GGG + chr4_2:52179001-52179020 Msa0606080:CDS 30.0%
!!! TTCATATTTTAATGTGGTGC+TGG + chr4_2:52179165-52179184 Msa0606080:three_prime_UTR 30.0%
ATATATAGAGGTTGCAATTG+CGG - chr4_2:52177268-52177287 None:intergenic 30.0%
AGTTACTGCTGTTAAAAATC+AGG + chr4_2:52177770-52177789 Msa0606080:CDS 30.0%
!!! AGTACATTTTAAAATCCGGT+GGG + chr4_2:52178530-52178549 Msa0606080:CDS 30.0%
TATATGCAAACATACATTGG+AGG + chr4_2:52178831-52178850 Msa0606080:CDS 30.0%
ATGGATACTACAAAATATGC+AGG + chr4_2:52179000-52179019 Msa0606080:CDS 30.0%
TGGATACTACAAAATATGCA+GGG + chr4_2:52179001-52179020 Msa0606080:CDS 30.0%
!!! TTCATATTTTAATGTGGTGC+TGG + chr4_2:52179165-52179184 Msa0606080:three_prime_UTR 30.0%
TGGAAAATCGCAGAATAGAA+TGG - chr4_2:52177313-52177332 None:intergenic 35.0%
TCAATTGATGCTTCTTAGCA+CGG - chr4_2:52177578-52177597 None:intergenic 35.0%
!! TGCTAAGAAGCATCAATTGA+TGG + chr4_2:52177578-52177597 Msa0606080:CDS 35.0%
AGATTATCTGTCGGAAGAAT+CGG - chr4_2:52177717-52177736 None:intergenic 35.0%
!!! GATTTTGATTGGAGAGAGAA+AGG + chr4_2:52177744-52177763 Msa0606080:CDS 35.0%
TGGGTTTGTGATCATGAATT+AGG + chr4_2:52177875-52177894 Msa0606080:intron 35.0%
GGGTTTGTGATCATGAATTA+GGG + chr4_2:52177876-52177895 Msa0606080:intron 35.0%
ATTGTATGAGGTTCGACTTA+AGG + chr4_2:52178194-52178213 Msa0606080:intron 35.0%
!!! GAGTACATTTTAAAATCCGG+TGG + chr4_2:52178529-52178548 Msa0606080:CDS 35.0%
!!! GTACATTTTAAAATCCGGTG+GGG + chr4_2:52178531-52178550 Msa0606080:CDS 35.0%
GAAGAAGACTATCCTTATTC+TGG + chr4_2:52178562-52178581 Msa0606080:CDS 35.0%
GTCTCTTTGAGCATATGTAT+GGG - chr4_2:52178866-52178885 None:intergenic 35.0%
AGTCTCTTTGAGCATATGTA+TGG - chr4_2:52178867-52178886 None:intergenic 35.0%
GGATACTACAAAATATGCAG+GGG + chr4_2:52179002-52179021 Msa0606080:CDS 35.0%
CTACTGAGTAGTAGTATGAA+CGG - chr4_2:52179072-52179091 None:intergenic 35.0%
TGAATACTGGCAACAATTCA+TGG - chr4_2:52179149-52179168 None:intergenic 35.0%
TGGAAAATCGCAGAATAGAA+TGG - chr4_2:52177313-52177332 None:intergenic 35.0%
TCAATTGATGCTTCTTAGCA+CGG - chr4_2:52177578-52177597 None:intergenic 35.0%
!! TGCTAAGAAGCATCAATTGA+TGG + chr4_2:52177578-52177597 Msa0606080:CDS 35.0%
AGATTATCTGTCGGAAGAAT+CGG - chr4_2:52177717-52177736 None:intergenic 35.0%
!!! GATTTTGATTGGAGAGAGAA+AGG + chr4_2:52177744-52177763 Msa0606080:CDS 35.0%
TGGGTTTGTGATCATGAATT+AGG + chr4_2:52177875-52177894 Msa0606080:intron 35.0%
GGGTTTGTGATCATGAATTA+GGG + chr4_2:52177876-52177895 Msa0606080:intron 35.0%
ATTGTATGAGGTTCGACTTA+AGG + chr4_2:52178194-52178213 Msa0606080:intron 35.0%
!!! GAGTACATTTTAAAATCCGG+TGG + chr4_2:52178529-52178548 Msa0606080:CDS 35.0%
!!! GTACATTTTAAAATCCGGTG+GGG + chr4_2:52178531-52178550 Msa0606080:CDS 35.0%
GAAGAAGACTATCCTTATTC+TGG + chr4_2:52178562-52178581 Msa0606080:CDS 35.0%
GTCTCTTTGAGCATATGTAT+GGG - chr4_2:52178866-52178885 None:intergenic 35.0%
AGTCTCTTTGAGCATATGTA+TGG - chr4_2:52178867-52178886 None:intergenic 35.0%
GGATACTACAAAATATGCAG+GGG + chr4_2:52179002-52179021 Msa0606080:CDS 35.0%
CTACTGAGTAGTAGTATGAA+CGG - chr4_2:52179072-52179091 None:intergenic 35.0%
TGAATACTGGCAACAATTCA+TGG - chr4_2:52179149-52179168 None:intergenic 35.0%
TCGCAGAATAGAATGGAAAG+TGG - chr4_2:52177306-52177325 None:intergenic 40.0%
! TTTTCCACATCCTCAAGTCA+TGG + chr4_2:52177326-52177345 Msa0606080:exon 40.0%
! TCTTTTCATCTTCTCCGTCT+CGG + chr4_2:52177377-52177396 Msa0606080:CDS 40.0%
AGAAGATCCAATAATCCGAC+AGG + chr4_2:52177422-52177441 Msa0606080:CDS 40.0%
TGGGAAGGTTTATTCTTCCA+AGG + chr4_2:52177509-52177528 Msa0606080:CDS 40.0%
CCTGTAATCATGTTCATCCT+TGG - chr4_2:52177529-52177548 None:intergenic 40.0%
CCAAGGATGAACATGATTAC+AGG + chr4_2:52177526-52177545 Msa0606080:CDS 40.0%
! GCATCAATTGATGGATCCTT+CGG + chr4_2:52177587-52177606 Msa0606080:CDS 40.0%
ATTATCTGTCGGAAGAATCG+GGG - chr4_2:52177715-52177734 None:intergenic 40.0%
GATTATCTGTCGGAAGAATC+GGG - chr4_2:52177716-52177735 None:intergenic 40.0%
TCTTCCGACAGATAATCTTC+CGG + chr4_2:52177719-52177738 Msa0606080:CDS 40.0%
!! ATCTTCCGGAGGATTTTGAT+TGG + chr4_2:52177733-52177752 Msa0606080:CDS 40.0%
TCTCTCCAATCAAAATCCTC+CGG - chr4_2:52177741-52177760 None:intergenic 40.0%
TGTTGGAGTTTCAGTACAAC+CGG + chr4_2:52177912-52177931 Msa0606080:CDS 40.0%
! GCTAAGACTGACAAGTTTTC+CGG - chr4_2:52177967-52177986 None:intergenic 40.0%
! ACTTGTCGATTGTGATCATG+AGG + chr4_2:52177995-52178014 Msa0606080:CDS 40.0%
ACCGTTCTTGACAAGATTAG+CGG - chr4_2:52178680-52178699 None:intergenic 40.0%
CTTTAGCACTTACTAGCAAG+AGG - chr4_2:52178703-52178722 None:intergenic 40.0%
TGCTCAAAGAGACTAGATCA+TGG + chr4_2:52178873-52178892 Msa0606080:CDS 40.0%
! ACTAGATCATGGAGTGTTAC+TGG + chr4_2:52178884-52178903 Msa0606080:CDS 40.0%
CTTCATCCTAATAGGCGAAT+AGG - chr4_2:52178928-52178947 None:intergenic 40.0%
CTATTCGCCTATTAGGATGA+AGG + chr4_2:52178926-52178945 Msa0606080:CDS 40.0%
TCGCAGAATAGAATGGAAAG+TGG - chr4_2:52177306-52177325 None:intergenic 40.0%
! TTTTCCACATCCTCAAGTCA+TGG + chr4_2:52177326-52177345 Msa0606080:exon 40.0%
! TCTTTTCATCTTCTCCGTCT+CGG + chr4_2:52177377-52177396 Msa0606080:CDS 40.0%
AGAAGATCCAATAATCCGAC+AGG + chr4_2:52177422-52177441 Msa0606080:CDS 40.0%
TGGGAAGGTTTATTCTTCCA+AGG + chr4_2:52177509-52177528 Msa0606080:CDS 40.0%
CCTGTAATCATGTTCATCCT+TGG - chr4_2:52177529-52177548 None:intergenic 40.0%
CCAAGGATGAACATGATTAC+AGG + chr4_2:52177526-52177545 Msa0606080:CDS 40.0%
! GCATCAATTGATGGATCCTT+CGG + chr4_2:52177587-52177606 Msa0606080:CDS 40.0%
ATTATCTGTCGGAAGAATCG+GGG - chr4_2:52177715-52177734 None:intergenic 40.0%
GATTATCTGTCGGAAGAATC+GGG - chr4_2:52177716-52177735 None:intergenic 40.0%
TCTTCCGACAGATAATCTTC+CGG + chr4_2:52177719-52177738 Msa0606080:CDS 40.0%
!! ATCTTCCGGAGGATTTTGAT+TGG + chr4_2:52177733-52177752 Msa0606080:CDS 40.0%
TCTCTCCAATCAAAATCCTC+CGG - chr4_2:52177741-52177760 None:intergenic 40.0%
TGTTGGAGTTTCAGTACAAC+CGG + chr4_2:52177912-52177931 Msa0606080:CDS 40.0%
! GCTAAGACTGACAAGTTTTC+CGG - chr4_2:52177967-52177986 None:intergenic 40.0%
! ACTTGTCGATTGTGATCATG+AGG + chr4_2:52177995-52178014 Msa0606080:CDS 40.0%
ACCGTTCTTGACAAGATTAG+CGG - chr4_2:52178680-52178699 None:intergenic 40.0%
CTTTAGCACTTACTAGCAAG+AGG - chr4_2:52178703-52178722 None:intergenic 40.0%
TGCTCAAAGAGACTAGATCA+TGG + chr4_2:52178873-52178892 Msa0606080:CDS 40.0%
! ACTAGATCATGGAGTGTTAC+TGG + chr4_2:52178884-52178903 Msa0606080:CDS 40.0%
CTTCATCCTAATAGGCGAAT+AGG - chr4_2:52178928-52178947 None:intergenic 40.0%
CTATTCGCCTATTAGGATGA+AGG + chr4_2:52178926-52178945 Msa0606080:CDS 40.0%
GGTTGCAATTGCGGTAAGTA+AGG - chr4_2:52177259-52177278 None:intergenic 45.0%
TGATCCATGACTTGAGGATG+TGG - chr4_2:52177333-52177352 None:intergenic 45.0%
ATTGGATCTTCTCCTTCGTC+CGG - chr4_2:52177414-52177433 None:intergenic 45.0%
AGATCCAATAATCCGACAGG+TGG + chr4_2:52177425-52177444 Msa0606080:CDS 45.0%
! TCAATTGATGGATCCTTCGG+CGG + chr4_2:52177590-52177609 Msa0606080:CDS 45.0%
AATTCTCCGATCTTACTCCG+AGG + chr4_2:52177628-52177647 Msa0606080:CDS 45.0%
ATTCTCCGATCTTACTCCGA+GGG + chr4_2:52177629-52177648 Msa0606080:CDS 45.0%
AAACTCCCTCGGAGTAAGAT+CGG - chr4_2:52177637-52177656 None:intergenic 45.0%
!! GAGTTTCGTCAGAGCGTTTT+GGG + chr4_2:52177651-52177670 Msa0606080:CDS 45.0%
!!! AGAGCGTTTTGGGATTGAGA+GGG + chr4_2:52177661-52177680 Msa0606080:CDS 45.0%
TCCTCCGGAAGATTATCTGT+CGG - chr4_2:52177726-52177745 None:intergenic 45.0%
ATCATGAATTAGGGCTCGTG+TGG + chr4_2:52177885-52177904 Msa0606080:intron 45.0%
! GCACATCGATAGTGACTTGT+AGG + chr4_2:52178230-52178249 Msa0606080:intron 45.0%
ATAGTGTGATCCAGAGCAAC+CGG + chr4_2:52178459-52178478 Msa0606080:intron 45.0%
CCACGATCAGTACCAGAATA+AGG - chr4_2:52178577-52178596 None:intergenic 45.0%
!! CCTTATTCTGGTACTGATCG+TGG + chr4_2:52178574-52178593 Msa0606080:CDS 45.0%
TGACAAGATTAGCGGCAATC+TGG - chr4_2:52178672-52178691 None:intergenic 45.0%
GCCGCTAATCTTGTCAAGAA+CGG + chr4_2:52178676-52178695 Msa0606080:CDS 45.0%
! AGATCATGGAGTGTTACTGG+TGG + chr4_2:52178887-52178906 Msa0606080:CDS 45.0%
! GATCATGGAGTGTTACTGGT+GGG + chr4_2:52178888-52178907 Msa0606080:CDS 45.0%
TTACTGGTGGGATATGGATC+TGG + chr4_2:52178900-52178919 Msa0606080:CDS 45.0%
GGCTTCTCCTTCATCCTAAT+AGG - chr4_2:52178936-52178955 None:intergenic 45.0%
GGATGAAGGAGAAGCCATAT+TGG + chr4_2:52178940-52178959 Msa0606080:CDS 45.0%
AAAACTCATGGGGTGAGACT+TGG + chr4_2:52178970-52178989 Msa0606080:CDS 45.0%
AAACTCATGGGGTGAGACTT+GGG + chr4_2:52178971-52178990 Msa0606080:CDS 45.0%
TGCAGGGGACGAAATATATG+CGG + chr4_2:52179017-52179036 Msa0606080:CDS 45.0%
GGTTGCAATTGCGGTAAGTA+AGG - chr4_2:52177259-52177278 None:intergenic 45.0%
TGATCCATGACTTGAGGATG+TGG - chr4_2:52177333-52177352 None:intergenic 45.0%
ATTGGATCTTCTCCTTCGTC+CGG - chr4_2:52177414-52177433 None:intergenic 45.0%
AGATCCAATAATCCGACAGG+TGG + chr4_2:52177425-52177444 Msa0606080:CDS 45.0%
! TCAATTGATGGATCCTTCGG+CGG + chr4_2:52177590-52177609 Msa0606080:CDS 45.0%
AATTCTCCGATCTTACTCCG+AGG + chr4_2:52177628-52177647 Msa0606080:CDS 45.0%
ATTCTCCGATCTTACTCCGA+GGG + chr4_2:52177629-52177648 Msa0606080:CDS 45.0%
AAACTCCCTCGGAGTAAGAT+CGG - chr4_2:52177637-52177656 None:intergenic 45.0%
!! GAGTTTCGTCAGAGCGTTTT+GGG + chr4_2:52177651-52177670 Msa0606080:CDS 45.0%
!!! AGAGCGTTTTGGGATTGAGA+GGG + chr4_2:52177661-52177680 Msa0606080:CDS 45.0%
TCCTCCGGAAGATTATCTGT+CGG - chr4_2:52177726-52177745 None:intergenic 45.0%
ATCATGAATTAGGGCTCGTG+TGG + chr4_2:52177885-52177904 Msa0606080:intron 45.0%
! GCACATCGATAGTGACTTGT+AGG + chr4_2:52178230-52178249 Msa0606080:intron 45.0%
ATAGTGTGATCCAGAGCAAC+CGG + chr4_2:52178459-52178478 Msa0606080:intron 45.0%
CCACGATCAGTACCAGAATA+AGG - chr4_2:52178577-52178596 None:intergenic 45.0%
!! CCTTATTCTGGTACTGATCG+TGG + chr4_2:52178574-52178593 Msa0606080:CDS 45.0%
TGACAAGATTAGCGGCAATC+TGG - chr4_2:52178672-52178691 None:intergenic 45.0%
GCCGCTAATCTTGTCAAGAA+CGG + chr4_2:52178676-52178695 Msa0606080:CDS 45.0%
! AGATCATGGAGTGTTACTGG+TGG + chr4_2:52178887-52178906 Msa0606080:CDS 45.0%
! GATCATGGAGTGTTACTGGT+GGG + chr4_2:52178888-52178907 Msa0606080:CDS 45.0%
TTACTGGTGGGATATGGATC+TGG + chr4_2:52178900-52178919 Msa0606080:CDS 45.0%
GGCTTCTCCTTCATCCTAAT+AGG - chr4_2:52178936-52178955 None:intergenic 45.0%
GGATGAAGGAGAAGCCATAT+TGG + chr4_2:52178940-52178959 Msa0606080:CDS 45.0%
AAAACTCATGGGGTGAGACT+TGG + chr4_2:52178970-52178989 Msa0606080:CDS 45.0%
AAACTCATGGGGTGAGACTT+GGG + chr4_2:52178971-52178990 Msa0606080:CDS 45.0%
TGCAGGGGACGAAATATATG+CGG + chr4_2:52179017-52179036 Msa0606080:CDS 45.0%
GTGCGATGATCCATGACTTG+AGG - chr4_2:52177339-52177358 None:intergenic 50.0%
TCGACCACCTGTCGGATTAT+TGG - chr4_2:52177432-52177451 None:intergenic 50.0%
TGGTCGACGATGAAGAAGTG+CGG + chr4_2:52177445-52177464 Msa0606080:CDS 50.0%
! GACGATGAAGAAGTGCGGTT+GGG + chr4_2:52177450-52177469 Msa0606080:CDS 50.0%
!! GGAGTTTCGTCAGAGCGTTT+TGG + chr4_2:52177650-52177669 Msa0606080:CDS 50.0%
!!! CAGAGCGTTTTGGGATTGAG+AGG + chr4_2:52177660-52177679 Msa0606080:CDS 50.0%
!!! GAGCGTTTTGGGATTGAGAG+GGG + chr4_2:52177662-52177681 Msa0606080:CDS 50.0%
!!! GTTTTGGGATTGAGAGGGGT+GGG + chr4_2:52177666-52177685 Msa0606080:CDS 50.0%
!!! TTTTGGGATTGAGAGGGGTG+GGG + chr4_2:52177667-52177686 Msa0606080:CDS 50.0%
GGGGCTGCATTTGCATCTTT+CGG - chr4_2:52177696-52177715 None:intergenic 50.0%
TCCGACAGATAATCTTCCGG+AGG + chr4_2:52177722-52177741 Msa0606080:CDS 50.0%
AGTACAACCGGTGCACTTGA+AGG + chr4_2:52177924-52177943 Msa0606080:CDS 50.0%
TAGTGTGATCCAGAGCAACC+GGG + chr4_2:52178460-52178479 Msa0606080:intron 50.0%
! GGAGTGTTACTGGTGGGATA+TGG + chr4_2:52178894-52178913 Msa0606080:CDS 50.0%
CTGGAGCCTATTCGCCTATT+AGG + chr4_2:52178919-52178938 Msa0606080:CDS 50.0%
AACTCATGGGGTGAGACTTG+GGG + chr4_2:52178972-52178991 Msa0606080:CDS 50.0%
GGTGAGACTTGGGGAGAAAA+TGG + chr4_2:52178981-52179000 Msa0606080:CDS 50.0%
GGGACGAAATATATGCGGAG+TGG + chr4_2:52179022-52179041 Msa0606080:CDS 50.0%
! TATATGCGGAGTGGACTCCA+TGG + chr4_2:52179031-52179050 Msa0606080:CDS 50.0%
GGACTCCATGGTTTCTACTG+TGG + chr4_2:52179043-52179062 Msa0606080:CDS 50.0%
GTGCGATGATCCATGACTTG+AGG - chr4_2:52177339-52177358 None:intergenic 50.0%
TCGACCACCTGTCGGATTAT+TGG - chr4_2:52177432-52177451 None:intergenic 50.0%
TGGTCGACGATGAAGAAGTG+CGG + chr4_2:52177445-52177464 Msa0606080:CDS 50.0%
! GACGATGAAGAAGTGCGGTT+GGG + chr4_2:52177450-52177469 Msa0606080:CDS 50.0%
!! GGAGTTTCGTCAGAGCGTTT+TGG + chr4_2:52177650-52177669 Msa0606080:CDS 50.0%
!!! CAGAGCGTTTTGGGATTGAG+AGG + chr4_2:52177660-52177679 Msa0606080:CDS 50.0%
!!! GAGCGTTTTGGGATTGAGAG+GGG + chr4_2:52177662-52177681 Msa0606080:CDS 50.0%
!!! GTTTTGGGATTGAGAGGGGT+GGG + chr4_2:52177666-52177685 Msa0606080:CDS 50.0%
!!! TTTTGGGATTGAGAGGGGTG+GGG + chr4_2:52177667-52177686 Msa0606080:CDS 50.0%
GGGGCTGCATTTGCATCTTT+CGG - chr4_2:52177696-52177715 None:intergenic 50.0%
TCCGACAGATAATCTTCCGG+AGG + chr4_2:52177722-52177741 Msa0606080:CDS 50.0%
AGTACAACCGGTGCACTTGA+AGG + chr4_2:52177924-52177943 Msa0606080:CDS 50.0%
TAGTGTGATCCAGAGCAACC+GGG + chr4_2:52178460-52178479 Msa0606080:intron 50.0%
! GGAGTGTTACTGGTGGGATA+TGG + chr4_2:52178894-52178913 Msa0606080:CDS 50.0%
CTGGAGCCTATTCGCCTATT+AGG + chr4_2:52178919-52178938 Msa0606080:CDS 50.0%
AACTCATGGGGTGAGACTTG+GGG + chr4_2:52178972-52178991 Msa0606080:CDS 50.0%
GGTGAGACTTGGGGAGAAAA+TGG + chr4_2:52178981-52179000 Msa0606080:CDS 50.0%
GGGACGAAATATATGCGGAG+TGG + chr4_2:52179022-52179041 Msa0606080:CDS 50.0%
! TATATGCGGAGTGGACTCCA+TGG + chr4_2:52179031-52179050 Msa0606080:CDS 50.0%
GGACTCCATGGTTTCTACTG+TGG + chr4_2:52179043-52179062 Msa0606080:CDS 50.0%
CTTCATCGTCGACCACCTGT+CGG - chr4_2:52177440-52177459 None:intergenic 55.0%
! CGACGATGAAGAAGTGCGGT+TGG + chr4_2:52177449-52177468 Msa0606080:CDS 55.0%
ATGGATCCTTCGGCGGTTCA+CGG + chr4_2:52177597-52177616 Msa0606080:CDS 55.0%
ACGCTCTGACGAAACTCCCT+CGG - chr4_2:52177648-52177667 None:intergenic 55.0%
!!! CGTTTTGGGATTGAGAGGGG+TGG + chr4_2:52177665-52177684 Msa0606080:CDS 55.0%
AGGGCTCGTGTGGATCATGT+TGG + chr4_2:52177895-52177914 Msa0606080:intron 55.0%
GTGAGCACCTTCAAGTGCAC+CGG - chr4_2:52177934-52177953 None:intergenic 55.0%
GGTGCTCACTTTCTCTCGAC+CGG + chr4_2:52177945-52177964 Msa0606080:CDS 55.0%
TCACAAGAACCCGGTTGCTC+TGG - chr4_2:52178472-52178491 None:intergenic 55.0%
CAACCGGGTTCTTGTGATGC+CGG + chr4_2:52178475-52178494 Msa0606080:CDS 55.0%
AACCGGGTTCTTGTGATGCC+GGG + chr4_2:52178476-52178495 Msa0606080:CDS 55.0%
TCTTGTGATGCCGGGTGCAA+TGG + chr4_2:52178484-52178503 Msa0606080:CDS 55.0%
CATCAGACCACCATTGCACC+CGG - chr4_2:52178497-52178516 None:intergenic 55.0%
GGCAGCCACAGTAGAAACCA+TGG - chr4_2:52179051-52179070 None:intergenic 55.0%
CTTCATCGTCGACCACCTGT+CGG - chr4_2:52177440-52177459 None:intergenic 55.0%
! CGACGATGAAGAAGTGCGGT+TGG + chr4_2:52177449-52177468 Msa0606080:CDS 55.0%
ATGGATCCTTCGGCGGTTCA+CGG + chr4_2:52177597-52177616 Msa0606080:CDS 55.0%
ACGCTCTGACGAAACTCCCT+CGG - chr4_2:52177648-52177667 None:intergenic 55.0%
!!! CGTTTTGGGATTGAGAGGGG+TGG + chr4_2:52177665-52177684 Msa0606080:CDS 55.0%
AGGGCTCGTGTGGATCATGT+TGG + chr4_2:52177895-52177914 Msa0606080:intron 55.0%
GTGAGCACCTTCAAGTGCAC+CGG - chr4_2:52177934-52177953 None:intergenic 55.0%
GGTGCTCACTTTCTCTCGAC+CGG + chr4_2:52177945-52177964 Msa0606080:CDS 55.0%
TCACAAGAACCCGGTTGCTC+TGG - chr4_2:52178472-52178491 None:intergenic 55.0%
CAACCGGGTTCTTGTGATGC+CGG + chr4_2:52178475-52178494 Msa0606080:CDS 55.0%
AACCGGGTTCTTGTGATGCC+GGG + chr4_2:52178476-52178495 Msa0606080:CDS 55.0%
TCTTGTGATGCCGGGTGCAA+TGG + chr4_2:52178484-52178503 Msa0606080:CDS 55.0%
CATCAGACCACCATTGCACC+CGG - chr4_2:52178497-52178516 None:intergenic 55.0%
GGCAGCCACAGTAGAAACCA+TGG - chr4_2:52179051-52179070 None:intergenic 55.0%
CGGCGTAGAGAATGCCGAGA+CGG - chr4_2:52177394-52177413 None:intergenic 60.0%
CGTCTCGGCATTCTCTACGC+CGG + chr4_2:52177392-52177411 Msa0606080:CDS 60.0%
GCATTCTCTACGCCGGACGA+AGG + chr4_2:52177399-52177418 Msa0606080:CDS 60.0%
GTAACACCGTGAACCGCCGA+AGG - chr4_2:52177606-52177625 None:intergenic 60.0%
CACCCGGCATCACAAGAACC+CGG - chr4_2:52178481-52178500 None:intergenic 60.0%
TGTGATGCCGGGTGCAATGG+TGG + chr4_2:52178487-52178506 Msa0606080:CDS 60.0%
TTCTTCGCGCATCACCCCAC+CGG - chr4_2:52178548-52178567 None:intergenic 60.0%
CGGCGTAGAGAATGCCGAGA+CGG - chr4_2:52177394-52177413 None:intergenic 60.0%
CGTCTCGGCATTCTCTACGC+CGG + chr4_2:52177392-52177411 Msa0606080:CDS 60.0%
GCATTCTCTACGCCGGACGA+AGG + chr4_2:52177399-52177418 Msa0606080:CDS 60.0%
GTAACACCGTGAACCGCCGA+AGG - chr4_2:52177606-52177625 None:intergenic 60.0%
CACCCGGCATCACAAGAACC+CGG - chr4_2:52178481-52178500 None:intergenic 60.0%
TGTGATGCCGGGTGCAATGG+TGG + chr4_2:52178487-52178506 Msa0606080:CDS 60.0%
TTCTTCGCGCATCACCCCAC+CGG - chr4_2:52178548-52178567 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52177213 52179323 52177213 ID=Msa0606080;Name=Msa0606080
chr4_2 mRNA 52177213 52179323 52177213 ID=Msa0606080-mRNA-1;Parent=Msa0606080;Name=Msa0606080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=132|1|1|1|1|1|4|232|363
chr4_2 exon 52177213 52177791 52177213 ID=Msa0606080-mRNA-1:exon:12614;Parent=Msa0606080-mRNA-1
chr4_2 exon 52177897 52178016 52177897 ID=Msa0606080-mRNA-1:exon:12615;Parent=Msa0606080-mRNA-1
chr4_2 exon 52178463 52178709 52178463 ID=Msa0606080-mRNA-1:exon:12616;Parent=Msa0606080-mRNA-1
chr4_2 exon 52178814 52179323 52178814 ID=Msa0606080-mRNA-1:exon:12617;Parent=Msa0606080-mRNA-1
chr4_2 five_prime_UTR 52177213 52177344 52177213 ID=Msa0606080-mRNA-1:five_prime_utr;Parent=Msa0606080-mRNA-1
chr4_2 CDS 52177345 52177791 52177345 ID=Msa0606080-mRNA-1:cds;Parent=Msa0606080-mRNA-1
chr4_2 CDS 52177897 52178016 52177897 ID=Msa0606080-mRNA-1:cds;Parent=Msa0606080-mRNA-1
chr4_2 CDS 52178463 52178709 52178463 ID=Msa0606080-mRNA-1:cds;Parent=Msa0606080-mRNA-1
chr4_2 CDS 52178814 52179091 52178814 ID=Msa0606080-mRNA-1:cds;Parent=Msa0606080-mRNA-1
chr4_2 three_prime_UTR 52179092 52179323 52179092 ID=Msa0606080-mRNA-1:three_prime_utr;Parent=Msa0606080-mRNA-1
Gene Sequence

>Msa0606080

ATGGATCATCGCACTCTTCTTCTCTTCGTCGTTCTTTTCATCTTCTCCGTCTCGGCATTCTCTACGCCGGACGAAGGAGAAGATCCAATAATCCGACAGGTGGTCGACGATGAAGAAGTGCGGTTGGGAGCAGAGCATCACTTTAACCTATTTAAACATAAGTTTGGGAAGGTTTATTCTTCCAAGGATGAACATGATTACAGGTTTAAAATCTTCAAGTCTAATCTGAACCGTGCTAAGAAGCATCAATTGATGGATCCTTCGGCGGTTCACGGTGTTACGAAATTCTCCGATCTTACTCCGAGGGAGTTTCGTCAGAGCGTTTTGGGATTGAGAGGGGTGGGGTTGCCGAAAGATGCAAATGCAGCCCCGATTCTTCCGACAGATAATCTTCCGGAGGATTTTGATTGGAGAGAGAAAGGAGCAGTTACTGCTGTTAAAAATCAGGGCTCGTGTGGATCATGTTGGAGTTTCAGTACAACCGGTGCACTTGAAGGTGCTCACTTTCTCTCGACCGGAAAACTTGTCAGTCTTAGCGAGCAACAACTTGTCGATTGTGATCATGAGTGTGATCCAGAGCAACCGGGTTCTTGTGATGCCGGGTGCAATGGTGGTCTGATGAATAGTGCTTTTGAGTACATTTTAAAATCCGGTGGGGTGATGCGCGAAGAAGACTATCCTTATTCTGGTACTGATCGTGGAGCATGCAAGTTTGACAAGAAAAAAATTGCAGCATCAGTTGCAAATTTCAGCGTTGTTTCACTTGATGAAGACCAGATTGCCGCTAATCTTGTCAAGAACGGTCCTCTTGCTATTGCCTTAAATGCAGTATATATGCAAACATACATTGGAGGAGTATCATGCCCATACATATGCTCAAAGAGACTAGATCATGGAGTGTTACTGGTGGGATATGGATCTGGAGCCTATTCGCCTATTAGGATGAAGGAGAAGCCATATTGGATAATTAAAAACTCATGGGGTGAGACTTGGGGAGAAAATGGATACTACAAAATATGCAGGGGACGAAATATATGCGGAGTGGACTCCATGGTTTCTACTGTGGCTGCCGTTCATACTACTACTCAGTAG

Protein sequence

>Msa0606080

MDHRTLLLFVVLFIFSVSAFSTPDEGEDPIIRQVVDDEEVRLGAEHHFNLFKHKFGKVYSSKDEHDYRFKIFKSNLNRAKKHQLMDPSAVHGVTKFSDLTPREFRQSVLGLRGVGLPKDANAAPILPTDNLPEDFDWREKGAVTAVKNQGSCGSCWSFSTTGALEGAHFLSTGKLVSLSEQQLVDCDHECDPEQPGSCDAGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGACKFDKKKIAASVANFSVVSLDEDQIAANLVKNGPLAIALNAVYMQTYIGGVSCPYICSKRLDHGVLLVGYGSGAYSPIRMKEKPYWIIKNSWGETWGENGYYKICRGRNICGVDSMVSTVAAVHTTTQ*