Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022030 | XP_013449058.1 | 91.962 | 423 | 10 | 1 | 1 | 399 | 1 | 423 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022030 | sp|Q9Y2M2|SSUH2_HUMAN | 29.514 | 288 | 182 | 8 | 104 | 389 | 103 | 371 | 1.88e-29 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022030 | A0A072UB64 | 91.962 | 423 | 10 | 1 | 1 | 399 | 1 | 423 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033840 | Msa1022030 | -0.814746 | 1.316483e-51 | -8.615850e-47 |
| Msa0043850 | Msa1022030 | 0.801139 | 1.036517e-48 | -8.615850e-47 |
| Msa0061220 | Msa1022030 | 0.820604 | 6.281303e-53 | -8.615850e-47 |
| Msa0077370 | Msa1022030 | 0.827567 | 1.457086e-54 | -8.615850e-47 |
| Msa0082230 | Msa1022030 | 0.800267 | 1.561873e-48 | -8.615850e-47 |
| Msa0082420 | Msa1022030 | 0.830296 | 3.181526e-55 | -8.615850e-47 |
| Msa0090510 | Msa1022030 | 0.807462 | 4.996235e-50 | -8.615850e-47 |
| Msa0090970 | Msa1022030 | 0.803105 | 4.085596e-49 | -8.615850e-47 |
| Msa0094710 | Msa1022030 | 0.827137 | 1.847027e-54 | -8.615850e-47 |
| Msa0097370 | Msa1022030 | 0.808523 | 2.969684e-50 | -8.615850e-47 |
| Msa0606080 | Msa1022030 | 0.855250 | 7.154911e-62 | -8.615850e-47 |
| Msa0641130 | Msa1022030 | 0.846602 | 1.959880e-59 | -8.615850e-47 |
| Msa0651560 | Msa1022030 | 0.818872 | 1.562082e-52 | -8.615850e-47 |
| Msa0697680 | Msa1022030 | 0.802114 | 6.540986e-49 | -8.615850e-47 |
| Msa0703810 | Msa1022030 | 0.816493 | 5.375054e-52 | -8.615850e-47 |
| Msa0707010 | Msa1022030 | 0.803433 | 3.494681e-49 | -8.615850e-47 |
| Msa0744640 | Msa1022030 | 0.822410 | 2.405183e-53 | -8.615850e-47 |
| Msa0779230 | Msa1022030 | 0.806344 | 8.610678e-50 | -8.615850e-47 |
| Msa0787790 | Msa1022030 | 0.805886 | 1.074936e-49 | -8.615850e-47 |
| Msa0821460 | Msa1022030 | 0.806119 | 9.601629e-50 | -8.615850e-47 |
| Msa0841730 | Msa1022030 | 0.820928 | 5.292650e-53 | -8.615850e-47 |
| Msa0183450 | Msa1022030 | 0.802704 | 4.945469e-49 | -8.615850e-47 |
| Msa0194920 | Msa1022030 | 0.815212 | 1.037592e-51 | -8.615850e-47 |
| Msa0236920 | Msa1022030 | 0.801002 | 1.105715e-48 | -8.615850e-47 |
| Msa0376420 | Msa1022030 | 0.827145 | 1.839350e-54 | -8.615850e-47 |
| Msa0388730 | Msa1022030 | 0.829400 | 5.257394e-55 | -8.615850e-47 |
| Msa1011250 | Msa1022030 | 0.830459 | 2.901439e-55 | -8.615850e-47 |
| Msa1022030 | Msa1023310 | 0.803563 | 3.283472e-49 | -8.615850e-47 |
| Msa1022030 | Msa1062040 | 0.842937 | 1.906192e-58 | -8.615850e-47 |
| Msa1022030 | Msa1062080 | 0.801706 | 7.933596e-49 | -8.615850e-47 |
| Msa1022030 | Msa1070540 | 0.817129 | 3.869550e-52 | -8.615850e-47 |
| Msa1022030 | Msa1101240 | 0.817303 | 3.536731e-52 | -8.615850e-47 |
| Msa1022030 | Msa1107200 | 0.837895 | 3.967128e-57 | -8.615850e-47 |
| Msa1022030 | Msa1140630 | 0.807647 | 4.564000e-50 | -8.615850e-47 |
| Msa1022030 | Msa1150780 | 0.824118 | 9.597725e-54 | -8.615850e-47 |
| Msa1022030 | Msa1168640 | 0.811755 | 5.974868e-51 | -8.615850e-47 |
| Msa1022030 | Msa1184690 | 0.803708 | 3.064954e-49 | -8.615850e-47 |
| Msa1022030 | Msa1208990 | 0.836470 | 9.185992e-57 | -8.615850e-47 |
| Msa1022030 | Msa1212130 | 0.808641 | 2.802988e-50 | -8.615850e-47 |
| Msa1022030 | Msa1225580 | 0.808039 | 3.767514e-50 | -8.615850e-47 |
| Msa1022030 | Msa1229480 | 0.805841 | 1.098671e-49 | -8.615850e-47 |
| Msa1022030 | Msa1259860 | 0.802677 | 5.008079e-49 | -8.615850e-47 |
| Msa1022030 | Msa1339320 | 0.894170 | 3.171666e-75 | -8.615850e-47 |
| Msa1022030 | Msa1355510 | 0.803033 | 4.227548e-49 | -8.615850e-47 |
| Msa1022030 | Msa1369920 | -0.819132 | 1.363662e-52 | -8.615850e-47 |
| Msa1022030 | Msa1370810 | 0.831106 | 2.014636e-55 | -8.615850e-47 |
| Msa1022030 | Msa1386890 | 0.802777 | 4.776428e-49 | -8.615850e-47 |
| Msa1022030 | Msa1387240 | 0.802173 | 6.360139e-49 | -8.615850e-47 |
| Msa1022030 | Msa1407760 | 0.825930 | 3.583227e-54 | -8.615850e-47 |
| Msa1022030 | Msa1418970 | 0.815842 | 7.512460e-52 | -8.615850e-47 |
| Msa1022030 | Msa1419840 | 0.821352 | 4.225619e-53 | -8.615850e-47 |
| Msa1022030 | Msa1437730 | 0.802573 | 5.262500e-49 | -8.615850e-47 |
| Msa1022030 | Msa1465860 | 0.820432 | 6.880775e-53 | -8.615850e-47 |
| Msa0264680 | Msa1022030 | 0.805442 | 1.332158e-49 | -8.615850e-47 |
| Msa0276100 | Msa1022030 | 0.804816 | 1.801694e-49 | -8.615850e-47 |
| Msa0302730 | Msa1022030 | 0.824503 | 7.792794e-54 | -8.615850e-47 |
| Msa0320470 | Msa1022030 | 0.801065 | 1.073424e-48 | -8.615850e-47 |
| Msa0484800 | Msa1022030 | 0.802457 | 5.560435e-49 | -8.615850e-47 |
| Msa0516240 | Msa1022030 | 0.826376 | 2.806157e-54 | -8.615850e-47 |
| Msa0529000 | Msa1022030 | 0.824993 | 5.970930e-54 | -8.615850e-47 |
| Msa0545020 | Msa1022030 | 0.827468 | 1.538446e-54 | -8.615850e-47 |
| Msa0545050 | Msa1022030 | 0.837281 | 5.703162e-57 | -8.615850e-47 |
| Msa0550610 | Msa1022030 | 0.807914 | 4.004284e-50 | -8.615850e-47 |
| Msa0567370 | Msa1022030 | 0.825042 | 5.816202e-54 | -8.615850e-47 |
| Msa0600590 | Msa1022030 | 0.847742 | 9.539957e-60 | -8.615850e-47 |
| Msa0863990 | Msa1022030 | 0.814534 | 1.467122e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022030 | MtrunA17_Chr7g0241151 | 91.962 | 423 | 10 | 1 | 1 | 399 | 1 | 423 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022030 | AT2G38000.1 | 58.920 | 426 | 141 | 6 | 1 | 399 | 1 | 419 | 9.07e-180 | 507 |
Find 125 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGACCTGAACTTGGTATT+TGG | 0.143432 | 7_1:-47279172 | Msa1022030:CDS |
| AATGCACCGTTCTCCATAAT+TGG | 0.166441 | 7_1:-47281083 | Msa1022030:five_prime_UTR |
| ATTGAACTCCTTTGGATCTA+TGG | 0.205179 | 7_1:+47276974 | None:intergenic |
| TCATTAAGGAATTAGAATTT+TGG | 0.206787 | 7_1:+47281133 | None:intergenic |
| TTGAGTTAACTTTGTCATTA+AGG | 0.219462 | 7_1:+47281119 | None:intergenic |
| TGACAGGGAGGTTTACTTAA+AGG | 0.241321 | 7_1:-47276740 | Msa1022030:CDS |
| GGTTTCTATCCTCCTGTTCA+TGG | 0.277472 | 7_1:-47280757 | Msa1022030:CDS |
| AACTCTTAACTAGGTATCTT+AGG | 0.294426 | 7_1:+47276379 | None:intergenic |
| GTTGTCCGTCTGATTATTCA+TGG | 0.299193 | 7_1:-47276449 | Msa1022030:three_prime_UTR |
| TAATCATACCTTCGGAATTC+AGG | 0.308842 | 7_1:+47280201 | None:intergenic |
| ATTGCATAATTGAACTCCTT+TGG | 0.315587 | 7_1:+47276966 | None:intergenic |
| TGAACTTGGTATTTGGGAAT+TGG | 0.319345 | 7_1:-47279165 | Msa1022030:CDS |
| GGCGGATATGGAGGAGATTA+TGG | 0.320851 | 7_1:-47280234 | Msa1022030:CDS |
| GTATTATCCATTGGCTTGTA+AGG | 0.325394 | 7_1:-47276547 | Msa1022030:three_prime_UTR |
| GCAATGTAGCCATTATAAAA+TGG | 0.334240 | 7_1:-47278531 | Msa1022030:intron |
| GTATTTGGGAATTGGATCTA+AGG | 0.340045 | 7_1:-47279157 | Msa1022030:CDS |
| TTTAGACAGAGACCCAATTA+TGG | 0.348225 | 7_1:+47281070 | None:intergenic |
| GCTCCTGTTCCTTCTTCTGC+AGG | 0.352522 | 7_1:-47280778 | Msa1022030:CDS |
| AGGACCTGAACTTGGTATTT+GGG | 0.353750 | 7_1:-47279171 | Msa1022030:CDS |
| TTGGGGCTTATGTCCTTGTT+TGG | 0.362816 | 7_1:-47276695 | Msa1022030:CDS |
| GTTTCTATCCTCCTGTTCAT+GGG | 0.370906 | 7_1:-47280756 | Msa1022030:CDS |
| AATATTGATGGAAAGGATAA+AGG | 0.372577 | 7_1:-47279191 | Msa1022030:CDS |
| GTTGCTTATCAAGGCGGATA+TGG | 0.373448 | 7_1:-47280246 | Msa1022030:CDS |
| ACTCAGTGTCCTAGTTGTTA+TGG | 0.382433 | 7_1:-47278856 | Msa1022030:CDS |
| ATTAGAACAAAGAAGTGAAT+TGG | 0.383660 | 7_1:-47280902 | Msa1022030:intron |
| TCCTTCAGTTTCTATATTGT+AGG | 0.389220 | 7_1:-47276766 | Msa1022030:CDS |
| ACCTTTGTTGTATTATCCAT+TGG | 0.394895 | 7_1:-47276556 | Msa1022030:three_prime_UTR |
| GCTTGTAAGGACTACAGTTA+TGG | 0.399398 | 7_1:-47276534 | Msa1022030:three_prime_UTR |
| TGCTCGAACATGGAAGATTC+AGG | 0.412128 | 7_1:-47279306 | Msa1022030:CDS |
| TTGGGAATCAGAGTGGAAAA+TGG | 0.416412 | 7_1:-47280879 | Msa1022030:CDS |
| ACATACAATCTCAGTTGTTC+CGG | 0.418682 | 7_1:-47276821 | Msa1022030:CDS |
| ATGGAACAACCTCTTCTATC+AGG | 0.419335 | 7_1:-47281042 | Msa1022030:intron |
| TATGAGCATGTGGGTCGAAC+AGG | 0.420593 | 7_1:-47280850 | Msa1022030:CDS |
| AACAAAGAAGTGAATTGGTT+GGG | 0.425780 | 7_1:-47280897 | Msa1022030:CDS |
| TACCCTGGTGGAAATATTGA+TGG | 0.431134 | 7_1:-47279203 | Msa1022030:CDS |
| TCAACACTTACACAAGTTCC+AGG | 0.435269 | 7_1:+47280817 | None:intergenic |
| TGGACATTATAAAGAAAATC+AGG | 0.436112 | 7_1:-47278881 | Msa1022030:CDS |
| CTGTAGGGTACAAATAGAAA+AGG | 0.448232 | 7_1:+47279125 | None:intergenic |
| GAAGTTATTGAGAAATGCTC+AGG | 0.463765 | 7_1:-47279074 | Msa1022030:intron |
| TGCAATGCTGATGGAGAACC+TGG | 0.465954 | 7_1:-47278901 | Msa1022030:CDS |
| TGGATACGTTTATAGAAGAA+AGG | 0.466452 | 7_1:-47279250 | Msa1022030:CDS |
| ATGCACCGTTCTCCATAATT+GGG | 0.471773 | 7_1:-47281082 | Msa1022030:five_prime_UTR |
| TGAATCTTCCATGTTCGAGC+AGG | 0.474774 | 7_1:+47279308 | None:intergenic |
| GTGTCCTAGTTGTTATGGAA+GGG | 0.475063 | 7_1:-47278851 | Msa1022030:CDS |
| CGAACAGGTTCTGCATATCC+TGG | 0.475291 | 7_1:-47280835 | Msa1022030:CDS |
| TCTATATTGTAGGAAATGAC+AGG | 0.476508 | 7_1:-47276756 | Msa1022030:CDS |
| GGTTTGATTGCTCATAAAGA+TGG | 0.476633 | 7_1:-47278829 | Msa1022030:CDS |
| CTTAACTGTGAAACGTGTAA+TGG | 0.480057 | 7_1:-47278574 | Msa1022030:CDS |
| AAGCTTCCTTGTGCGACTTG+TGG | 0.485746 | 7_1:-47278610 | Msa1022030:CDS |
| ATACCTTCGGAATTCAGGTC+TGG | 0.486171 | 7_1:+47280206 | None:intergenic |
| TTCTCAATAACTTCAGAATG+AGG | 0.490617 | 7_1:+47279083 | None:intergenic |
| TGTCCTAGTTGTTATGGAAG+GGG | 0.490801 | 7_1:-47278850 | Msa1022030:CDS |
| TCAATATTTCCACCAGGGTA+TGG | 0.494935 | 7_1:+47279206 | None:intergenic |
| TTGTCTTACAACTCTTAACT+AGG | 0.497351 | 7_1:+47276370 | None:intergenic |
| GTGCAAGCGGTTGCTTATCA+AGG | 0.497954 | 7_1:-47280255 | Msa1022030:CDS |
| GAACAAAGAAGTGAATTGGT+TGG | 0.499679 | 7_1:-47280898 | Msa1022030:CDS |
| GGATAGAAACCTGCAGAAGA+AGG | 0.500776 | 7_1:+47280769 | None:intergenic |
| GAAGACTGTAATGTTTATGT+TGG | 0.506847 | 7_1:-47279278 | Msa1022030:CDS |
| TCATCTGAGCCTGATCCTGC+TGG | 0.515267 | 7_1:-47280721 | Msa1022030:intron |
| AAACCTGCAGAAGAAGGAAC+AGG | 0.516529 | 7_1:+47280775 | None:intergenic |
| GATCTATGGAAAACTTCATC+CGG | 0.517007 | 7_1:+47276988 | None:intergenic |
| TAGAAGAGGTTGTTCCATGA+TGG | 0.519635 | 7_1:+47281047 | None:intergenic |
| TAAAGGAGCGGCATCAGTAC+CGG | 0.519939 | 7_1:-47277007 | Msa1022030:CDS |
| AAGGATAAAGGACCTGAACT+TGG | 0.524416 | 7_1:-47279179 | Msa1022030:CDS |
| TTTCTATCCTCCTGTTCATG+GGG | 0.524481 | 7_1:-47280755 | Msa1022030:CDS |
| GTGTGAAATGTAATGGTAAA+GGG | 0.525645 | 7_1:-47278633 | Msa1022030:CDS |
| TGTGTGAAATGTAATGGTAA+AGG | 0.528269 | 7_1:-47278634 | Msa1022030:CDS |
| AGAACGGTGCATTATATATG+TGG | 0.529995 | 7_1:+47281093 | None:intergenic |
| CAAATGACTCTTGCAGTGGC+AGG | 0.534071 | 7_1:+47276850 | None:intergenic |
| AAGAACATACCAGCAGGATC+AGG | 0.534132 | 7_1:+47280712 | None:intergenic |
| TGTAGGGTACAAATAGAAAA+GGG | 0.540231 | 7_1:+47279126 | None:intergenic |
| TGGTGGAAATATTGATGGAA+AGG | 0.543305 | 7_1:-47279198 | Msa1022030:CDS |
| AAAATAAGATGGGTCAAATG+GGG | 0.547275 | 7_1:+47281163 | None:intergenic |
| GGATACGTTTATAGAAGAAA+GGG | 0.547661 | 7_1:-47279249 | Msa1022030:CDS |
| GGTCTCTGTCTAAACCATCA+TGG | 0.548601 | 7_1:-47281061 | Msa1022030:exon |
| AGTGTCCTAGTTGTTATGGA+AGG | 0.551912 | 7_1:-47278852 | Msa1022030:CDS |
| AATTCCCAAATACCAAGTTC+AGG | 0.553284 | 7_1:+47279167 | None:intergenic |
| GAACGGTGCATTATATATGT+GGG | 0.554111 | 7_1:+47281094 | None:intergenic |
| TGCAGATGTGTGAAATGTAA+TGG | 0.564143 | 7_1:-47278640 | Msa1022030:intron |
| GCTTATGTCCTTGTTTGGAG+TGG | 0.571063 | 7_1:-47276690 | Msa1022030:CDS |
| CTGTAGTCCTTACAAGCCAA+TGG | 0.571243 | 7_1:+47276540 | None:intergenic |
| CGGAAAGTAAGTGCAACTAA+AGG | 0.571263 | 7_1:-47277024 | Msa1022030:CDS |
| TGTGCGACTTGTGGATCTCG+TGG | 0.577723 | 7_1:-47278601 | Msa1022030:CDS |
| CATGAGATTTAATCATGCAC+TGG | 0.579389 | 7_1:+47276471 | None:intergenic |
| TTTCCATCAATATTTCCACC+AGG | 0.579726 | 7_1:+47279200 | None:intergenic |
| AACTTCAACCACTCCAAACA+AGG | 0.582534 | 7_1:+47276682 | None:intergenic |
| TGTGCTACATGCAATGCTGA+TGG | 0.584240 | 7_1:-47278910 | Msa1022030:CDS |
| ATGGAGCTCATATGAGCATG+TGG | 0.588921 | 7_1:-47280860 | Msa1022030:CDS |
| ATTACCCGTTGCAGTGCAAG+CGG | 0.589006 | 7_1:-47280268 | Msa1022030:intron |
| AAGCCCCAACAAAATCTAGA+GGG | 0.592734 | 7_1:+47276709 | None:intergenic |
| GAAATAAAGTCAAATTCAAG+TGG | 0.593642 | 7_1:-47276496 | Msa1022030:three_prime_UTR |
| TCAGGTTGTGCCGGGCGAGG+AGG | 0.593663 | 7_1:-47278940 | Msa1022030:intron |
| TCCTACAATATAGAAACTGA+AGG | 0.594984 | 7_1:+47276765 | None:intergenic |
| AGTTCAATTATGCAATACTC+AGG | 0.596000 | 7_1:-47276959 | Msa1022030:CDS |
| GAAATTGTACCTGATAGAAG+AGG | 0.599830 | 7_1:+47281033 | None:intergenic |
| GCTTATCAAGGCGGATATGG+AGG | 0.600674 | 7_1:-47280243 | Msa1022030:CDS |
| TTCCATCAATATTTCCACCA+GGG | 0.602904 | 7_1:+47279201 | None:intergenic |
| TGTGAAACGTGTAATGGAAG+TGG | 0.607659 | 7_1:-47278568 | Msa1022030:CDS |
| GAATCTTCCATGTTCGAGCA+GGG | 0.608319 | 7_1:+47279309 | None:intergenic |
| ACAGACTATTCCTCCTCGCC+CGG | 0.608323 | 7_1:+47278930 | None:intergenic |
| AAACCCCTTCCATAACAACT+AGG | 0.608898 | 7_1:+47278847 | None:intergenic |
| TTCTATCCTCCTGTTCATGG+GGG | 0.610681 | 7_1:-47280754 | Msa1022030:CDS |
| CGAGATCCACAAGTCGCACA+AGG | 0.611817 | 7_1:+47278604 | None:intergenic |
| AAATAAGATGGGTCAAATGG+GGG | 0.617437 | 7_1:+47281164 | None:intergenic |
| CTATATTGTAGGAAATGACA+GGG | 0.624050 | 7_1:-47276755 | Msa1022030:CDS |
| CTCACAAATGACTCTTGCAG+TGG | 0.628837 | 7_1:+47276846 | None:intergenic |
| GCCAATGGATAATACAACAA+AGG | 0.632017 | 7_1:+47276555 | None:intergenic |
| TAATGTTTATGTTGGAACGC+TGG | 0.633236 | 7_1:-47279270 | Msa1022030:CDS |
| AAAGAGACAGAGCCATACCC+TGG | 0.641609 | 7_1:-47279218 | Msa1022030:CDS |
| TAAGCCCCAACAAAATCTAG+AGG | 0.643385 | 7_1:+47276708 | None:intergenic |
| AGAGACCCAATTATGGAGAA+CGG | 0.654060 | 7_1:+47281077 | None:intergenic |
| GAATTGGTTGGGAATCAGAG+TGG | 0.654854 | 7_1:-47280886 | Msa1022030:CDS |
| GAACCAGACCTGAATTCCGA+AGG | 0.656715 | 7_1:-47280209 | Msa1022030:intron |
| AGTAAGTGCAACTAAAGGAG+CGG | 0.664827 | 7_1:-47277019 | Msa1022030:CDS |
| GGATTGCCGACGATGAGACA+TGG | 0.665410 | 7_1:+47276786 | None:intergenic |
| ACAGGAAGACACTTTCAACT+CGG | 0.667034 | 7_1:-47277044 | Msa1022030:intron |
| TGGAGCTCATATGAGCATGT+GGG | 0.669407 | 7_1:-47280859 | Msa1022030:CDS |
| GCGTCACCATGTCTCATCGT+CGG | 0.669689 | 7_1:-47276792 | Msa1022030:CDS |
| AGCCCCAACAAAATCTAGAG+GGG | 0.675031 | 7_1:+47276710 | None:intergenic |
| GAGACAGAGCCATACCCTGG+TGG | 0.678375 | 7_1:-47279215 | Msa1022030:CDS |
| ACAAGCCATGAATAATCAGA+CGG | 0.681138 | 7_1:+47276444 | None:intergenic |
| CAAGCGGTTGCTTATCAAGG+CGG | 0.703834 | 7_1:-47280252 | Msa1022030:CDS |
| TCTTCCATGTTCGAGCAGGG+CGG | 0.712512 | 7_1:+47279312 | None:intergenic |
| GGATATGGAGGAGATTATGG+TGG | 0.714179 | 7_1:-47280231 | Msa1022030:CDS |
| TATTGTAGGAAATGACAGGG+AGG | 0.745630 | 7_1:-47276752 | Msa1022030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAGATTATTATTTTCA+AGG | - | chr7_1:47277909-47277928 | Msa1022030:intron | 10.0% |
| !!! | TTAAACATAAAAGTATTTTA+TGG | + | chr7_1:47279267-47279286 | None:intergenic | 10.0% |
| !! | TGGATTATAAAAAATAAGAT+GGG | + | chr7_1:47276393-47276412 | None:intergenic | 15.0% |
| !! | TTGGATTATAAAAAATAAGA+TGG | + | chr7_1:47276394-47276413 | None:intergenic | 15.0% |
| !!! | TTTAAAATGTTGTCAAATAT+CGG | - | chr7_1:47276965-47276984 | Msa1022030:CDS | 15.0% |
| !! | AATTCTAATCTAATTTGATT+GGG | + | chr7_1:47277708-47277727 | None:intergenic | 15.0% |
| !! | TAATTCTAATCTAATTTGAT+TGG | + | chr7_1:47277709-47277728 | None:intergenic | 15.0% |
| !! | ATTAGATTAGAATTAAGATT+AGG | - | chr7_1:47277714-47277733 | Msa1022030:intron | 15.0% |
| !!! | AAAGAACTTTTAATCATAAA+GGG | + | chr7_1:47277978-47277997 | None:intergenic | 15.0% |
| !!! | TAAAGAACTTTTAATCATAA+AGG | + | chr7_1:47277979-47277998 | None:intergenic | 15.0% |
| !!! | ATTAACATACCATTTTATAA+TGG | + | chr7_1:47279024-47279043 | None:intergenic | 15.0% |
| !! | ATATACATTCAAAATATCTT+TGG | - | chr7_1:47279296-47279315 | Msa1022030:CDS | 15.0% |
| !! | AAAACAAATAGTATAAGTTT+CGG | + | chr7_1:47279520-47279539 | None:intergenic | 15.0% |
| !! | ACTCCTATTTAAATAAAATA+TGG | + | chr7_1:47279597-47279616 | None:intergenic | 15.0% |
| !!! | TCATTAAGGAATTAGAATTT+TGG | + | chr7_1:47276413-47276432 | None:intergenic | 20.0% |
| !! | TTTAATCATGATTATGATTC+TGG | - | chr7_1:47276597-47276616 | Msa1022030:three_prime_UTR | 20.0% |
| !! | TTAATCATGATTATGATTCT+GGG | - | chr7_1:47276598-47276617 | Msa1022030:three_prime_UTR | 20.0% |
| !!! | CTTTTTTGAATTATGATGAT+TGG | - | chr7_1:47276879-47276898 | Msa1022030:CDS | 20.0% |
| !! | TCATTCTACAATGATATTTA+TGG | - | chr7_1:47277487-47277506 | Msa1022030:intron | 20.0% |
| !! | TGATCAATAATCTTATCAAA+TGG | - | chr7_1:47278021-47278040 | Msa1022030:intron | 20.0% |
| !!! | TTTCACAAATCAAATTTTCA+CGG | - | chr7_1:47278517-47278536 | Msa1022030:intron | 20.0% |
| !!! | AATAATTTCCAAGGTTTTAA+GGG | + | chr7_1:47278582-47278601 | None:intergenic | 20.0% |
| !!! | AAATAATTTCCAAGGTTTTA+AGG | + | chr7_1:47278583-47278602 | None:intergenic | 20.0% |
| !!! | ATAAAAGTATTTTATGGATG+GGG | + | chr7_1:47279261-47279280 | None:intergenic | 20.0% |
| !!! | CATAAAAGTATTTTATGGAT+GGG | + | chr7_1:47279262-47279281 | None:intergenic | 20.0% |
| !!! | ACATAAAAGTATTTTATGGA+TGG | + | chr7_1:47279263-47279282 | None:intergenic | 20.0% |
| !!! | ATAGTTTAATTTAACTAAGC+AGG | - | chr7_1:47279413-47279432 | Msa1022030:intron | 20.0% |
| !!! | TAGTTTAATTTAACTAAGCA+GGG | - | chr7_1:47279414-47279433 | Msa1022030:intron | 20.0% |
| !! | TTTAAATAAAATATGGAGGT+CGG | + | chr7_1:47279590-47279609 | None:intergenic | 20.0% |
| !! | CCTATTTAAATAAAATATGG+AGG | + | chr7_1:47279594-47279613 | None:intergenic | 20.0% |
| !!! | CCTCCATATTTTATTTAAAT+AGG | - | chr7_1:47279591-47279610 | Msa1022030:intron | 20.0% |
| !! | ACTTTGAACAATATATACAT+AGG | - | chr7_1:47279647-47279666 | Msa1022030:intron | 20.0% |
| !! | TATATACATAGGTATTAAGA+AGG | - | chr7_1:47279658-47279677 | Msa1022030:intron | 20.0% |
| !! | ATATACATAGGTATTAAGAA+GGG | - | chr7_1:47279659-47279678 | Msa1022030:intron | 20.0% |
| !!! | ACAATGTTATATATGCTTTT+GGG | + | chr7_1:47279882-47279901 | None:intergenic | 20.0% |
| !!! | AACAATGTTATATATGCTTT+TGG | + | chr7_1:47279883-47279902 | None:intergenic | 20.0% |
| !! | AAAAAAAGAATCAGCAAAAA+AGG | + | chr7_1:47280628-47280647 | None:intergenic | 20.0% |
| !!! | AATAACATAAGCATGTTTTT+TGG | - | chr7_1:47280945-47280964 | Msa1022030:intron | 20.0% |
| ! | AAAAATAAGATGGGTCAAAT+GGG | + | chr7_1:47276384-47276403 | None:intergenic | 25.0% |
| ! | AAAAAATAAGATGGGTCAAA+TGG | + | chr7_1:47276385-47276404 | None:intergenic | 25.0% |
| ! | TTGAGTTAACTTTGTCATTA+AGG | + | chr7_1:47276427-47276446 | None:intergenic | 25.0% |
| ! | ATTAGAACAAAGAAGTGAAT+TGG | - | chr7_1:47276641-47276660 | Msa1022030:three_prime_UTR | 25.0% |
| !!! | ACATTTTAAAAAGTGCAGAT+GGG | + | chr7_1:47276955-47276974 | None:intergenic | 25.0% |
| !!! | AACATTTTAAAAAGTGCAGA+TGG | + | chr7_1:47276956-47276975 | None:intergenic | 25.0% |
| ! | AACTTATTGCGTAACAATAT+CGG | + | chr7_1:47277028-47277047 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTGAAATAG+CGG | - | chr7_1:47277054-47277073 | Msa1022030:intron | 25.0% |
| ! | ACTGGATTTATGTTTGATTA+GGG | - | chr7_1:47277142-47277161 | Msa1022030:intron | 25.0% |
| ! | AAGTTAAGTAATCATACCTT+CGG | + | chr7_1:47277353-47277372 | None:intergenic | 25.0% |
| ! | TGATATTTATGGACCATAAT+AGG | - | chr7_1:47277498-47277517 | Msa1022030:intron | 25.0% |
| ! | GATATTTATGGACCATAATA+GGG | - | chr7_1:47277499-47277518 | Msa1022030:intron | 25.0% |
| ! | CTAATTTCATGATCTATTAC+TGG | + | chr7_1:47277896-47277915 | None:intergenic | 25.0% |
| ! | ATTATTGATCAATATAGTGC+TGG | + | chr7_1:47278012-47278031 | None:intergenic | 25.0% |
| ! | NNNNNNNTCATTGATCACGT+TGG | - | chr7_1:47278187-47278206 | Msa1022030:intron | 25.0% |
| ! | AATATTGATGGAAAGGATAA+AGG | - | chr7_1:47278352-47278371 | Msa1022030:intron | 25.0% |
| !!! | ATAATTTCCAAGGTTTTAAG+GGG | + | chr7_1:47278581-47278600 | None:intergenic | 25.0% |
| !! | AAACCTTGGAAATTATTTTC+AGG | - | chr7_1:47278585-47278604 | Msa1022030:CDS | 25.0% |
| !! | TGATTTTCTTTATAATGTCC+AGG | + | chr7_1:47278663-47278682 | None:intergenic | 25.0% |
| ! | TGGACATTATAAAGAAAATC+AGG | - | chr7_1:47278662-47278681 | Msa1022030:intron | 25.0% |
| ! | TTCATTTGCTCATAAATAGA+AGG | - | chr7_1:47278757-47278776 | Msa1022030:intron | 25.0% |
| ! | TTTGTCAAAAAGAAAGTTTG+AGG | + | chr7_1:47279129-47279148 | None:intergenic | 25.0% |
| ! | AACAACTACGTTAAATTTGT+GGG | + | chr7_1:47279156-47279175 | None:intergenic | 25.0% |
| ! | AAACAACTACGTTAAATTTG+TGG | + | chr7_1:47279157-47279176 | None:intergenic | 25.0% |
| ! | ATATGATGCATCCTTAATTA+TGG | - | chr7_1:47279352-47279371 | Msa1022030:intron | 25.0% |
| ! | ATAGCATTCAACCATAATTA+AGG | + | chr7_1:47279366-47279385 | None:intergenic | 25.0% |
| ! | GTGATAGAGCTAATAAATAA+AGG | + | chr7_1:47279568-47279587 | None:intergenic | 25.0% |
| ! | TGTATACATTCATCAAAACA+AGG | - | chr7_1:47279622-47279641 | Msa1022030:intron | 25.0% |
| ! | GTATACATTCATCAAAACAA+GGG | - | chr7_1:47279623-47279642 | Msa1022030:intron | 25.0% |
| ! | GAGAATAATCTAAACCAAAT+GGG | + | chr7_1:47279775-47279794 | None:intergenic | 25.0% |
| ! | AGAGAATAATCTAAACCAAA+TGG | + | chr7_1:47279776-47279795 | None:intergenic | 25.0% |
| ! | TGTTGACATTTGTAGAAAAA+GGG | + | chr7_1:47279849-47279868 | None:intergenic | 25.0% |
| ! | TTGTTGACATTTGTAGAAAA+AGG | + | chr7_1:47279850-47279869 | None:intergenic | 25.0% |
| ! | TAAAAAGATGTGAGTGTTTA+AGG | - | chr7_1:47279981-47280000 | Msa1022030:intron | 25.0% |
| ! | TCACACATTCAAACTTTATT+AGG | + | chr7_1:47280137-47280156 | None:intergenic | 25.0% |
| ! | TAAGAATAATATGACACTGT+AGG | + | chr7_1:47280429-47280448 | None:intergenic | 25.0% |
| ! | GAAATAAAGTCAAATTCAAG+TGG | - | chr7_1:47281047-47281066 | Msa1022030:exon | 25.0% |
| AAAATAAGATGGGTCAAATG+GGG | + | chr7_1:47276383-47276402 | None:intergenic | 30.0% | |
| AACAAAGAAGTGAATTGGTT+GGG | - | chr7_1:47276646-47276665 | Msa1022030:three_prime_UTR | 30.0% | |
| GACTGGATTTATGTTTGATT+AGG | - | chr7_1:47277141-47277160 | Msa1022030:intron | 30.0% | |
| CTGGATTTATGTTTGATTAG+GGG | - | chr7_1:47277143-47277162 | Msa1022030:intron | 30.0% | |
| TGGATTTATGTTTGATTAGG+GGG | - | chr7_1:47277144-47277163 | Msa1022030:intron | 30.0% | |
| ! | CAATGTCTTTTGTAAGTATG+AGG | - | chr7_1:47277188-47277207 | Msa1022030:intron | 30.0% |
| ! | CATGATGGTATCTAATTTTG+TGG | - | chr7_1:47277431-47277450 | Msa1022030:intron | 30.0% |
| !! | TCTGAAAGAAGTATTAGTTG+TGG | - | chr7_1:47277462-47277481 | Msa1022030:intron | 30.0% |
| CCAAAGTGAAATTAAGAACA+GGG | + | chr7_1:47277601-47277620 | None:intergenic | 30.0% | |
| ACCAAAGTGAAATTAAGAAC+AGG | + | chr7_1:47277602-47277621 | None:intergenic | 30.0% | |
| TGAGCAGAAGATTATATTTG+AGG | - | chr7_1:47277669-47277688 | Msa1022030:intron | 30.0% | |
| ! | CTGGTTATTATTTGAAGTGT+TGG | - | chr7_1:47277773-47277792 | Msa1022030:intron | 30.0% |
| !! | ATTATTTTCAAGGCTTGTTC+TGG | - | chr7_1:47277919-47277938 | Msa1022030:intron | 30.0% |
| AAATGGCTAATCCACTTATA+GGG | - | chr7_1:47278038-47278057 | Msa1022030:intron | 30.0% | |
| GAAGACTGTAATGTTTATGT+TGG | - | chr7_1:47278265-47278284 | Msa1022030:intron | 30.0% | |
| TGGATACGTTTATAGAAGAA+AGG | - | chr7_1:47278293-47278312 | Msa1022030:intron | 30.0% | |
| GGATACGTTTATAGAAGAAA+GGG | - | chr7_1:47278294-47278313 | Msa1022030:intron | 30.0% | |
| TGTAGGGTACAAATAGAAAA+GGG | + | chr7_1:47278420-47278439 | None:intergenic | 30.0% | |
| ! | TTTTCTATTTGTACCCTACA+GGG | - | chr7_1:47278420-47278439 | Msa1022030:intron | 30.0% |
| TTCTCAATAACTTCAGAATG+AGG | + | chr7_1:47278463-47278482 | None:intergenic | 30.0% | |
| !!! | TAATTTCCAAGGTTTTAAGG+GGG | + | chr7_1:47278580-47278599 | None:intergenic | 30.0% |
| CAACCTGAAAATAATTTCCA+AGG | + | chr7_1:47278591-47278610 | None:intergenic | 30.0% | |
| !!! | AAATTATTTTCAGGTTGTGC+CGG | - | chr7_1:47278594-47278613 | Msa1022030:CDS | 30.0% |
| TGTGTGAAATGTAATGGTAA+AGG | - | chr7_1:47278909-47278928 | Msa1022030:CDS | 30.0% | |
| GTGTGAAATGTAATGGTAAA+GGG | - | chr7_1:47278910-47278929 | Msa1022030:CDS | 30.0% | |
| GCAATGTAGCCATTATAAAA+TGG | - | chr7_1:47279012-47279031 | Msa1022030:intron | 30.0% | |
| TTAAAAAACACATGCTCCAA+TGG | - | chr7_1:47279084-47279103 | Msa1022030:CDS | 30.0% | |
| AAATTTATTCCAGAGTCCAT+TGG | + | chr7_1:47279103-47279122 | None:intergenic | 30.0% | |
| GAATGATCATATGCTTTAGT+TGG | - | chr7_1:47279213-47279232 | Msa1022030:CDS | 30.0% | |
| !! | AAAGCTGATGTTGATTTCAA+AGG | - | chr7_1:47279919-47279938 | Msa1022030:intron | 30.0% |
| CACAAGATAAGAAAAACTTC+AGG | - | chr7_1:47280017-47280036 | Msa1022030:intron | 30.0% | |
| ! | GATAAGAAAAACTTCAGGTT+AGG | - | chr7_1:47280022-47280041 | Msa1022030:intron | 30.0% |
| !!! | GCCTTAAATTTTTGGTTGAT+GGG | - | chr7_1:47280044-47280063 | Msa1022030:intron | 30.0% |
| TCCCATCAACCAAAAATTTA+AGG | + | chr7_1:47280048-47280067 | None:intergenic | 30.0% | |
| AAGATATTGTACTTGTGATG+CGG | - | chr7_1:47280217-47280236 | Msa1022030:CDS | 30.0% | |
| !! | ACTATTTTGAATCTGCACAA+GGG | + | chr7_1:47280311-47280330 | None:intergenic | 30.0% |
| !! | AACTATTTTGAATCTGCACA+AGG | + | chr7_1:47280312-47280331 | None:intergenic | 30.0% |
| ATTGCATAATTGAACTCCTT+TGG | + | chr7_1:47280580-47280599 | None:intergenic | 30.0% | |
| AGTTCAATTATGCAATACTC+AGG | - | chr7_1:47280584-47280603 | Msa1022030:intron | 30.0% | |
| TCCTTCAGTTTCTATATTGT+AGG | - | chr7_1:47280777-47280796 | Msa1022030:CDS | 30.0% | |
| TCCTACAATATAGAAACTGA+AGG | + | chr7_1:47280781-47280800 | None:intergenic | 30.0% | |
| TCTATATTGTAGGAAATGAC+AGG | - | chr7_1:47280787-47280806 | Msa1022030:CDS | 30.0% | |
| CTATATTGTAGGAAATGACA+GGG | - | chr7_1:47280788-47280807 | Msa1022030:CDS | 30.0% | |
| !!! | TAAGCATGTTTTTTGGTTTG+AGG | - | chr7_1:47280952-47280971 | Msa1022030:intron | 30.0% |
| !!! | AAGCATGTTTTTTGGTTTGA+GGG | - | chr7_1:47280953-47280972 | Msa1022030:intron | 30.0% |
| ! | ACCTTTGTTGTATTATCCAT+TGG | - | chr7_1:47280987-47281006 | Msa1022030:intron | 30.0% |
| AACTCTTAACTAGGTATCTT+AGG | + | chr7_1:47281167-47281186 | None:intergenic | 30.0% | |
| AAATAAGATGGGTCAAATGG+GGG | + | chr7_1:47276382-47276401 | None:intergenic | 35.0% | |
| GAACGGTGCATTATATATGT+GGG | + | chr7_1:47276452-47276471 | None:intergenic | 35.0% | |
| AGAACGGTGCATTATATATG+TGG | + | chr7_1:47276453-47276472 | None:intergenic | 35.0% | |
| TTTAGACAGAGACCCAATTA+TGG | + | chr7_1:47276476-47276495 | None:intergenic | 35.0% | |
| GAAATTGTACCTGATAGAAG+AGG | + | chr7_1:47276513-47276532 | None:intergenic | 35.0% | |
| GAACAAAGAAGTGAATTGGT+TGG | - | chr7_1:47276645-47276664 | Msa1022030:three_prime_UTR | 35.0% | |
| !!! | CAGTTTTTTTGAATTCCGCT+AGG | + | chr7_1:47277094-47277113 | None:intergenic | 35.0% |
| TCTTCATAATCGCATATTGC+GGG | + | chr7_1:47277123-47277142 | None:intergenic | 35.0% | |
| GTCTTCATAATCGCATATTG+CGG | + | chr7_1:47277124-47277143 | None:intergenic | 35.0% | |
| CAATATGCGATTATGAAGAC+TGG | - | chr7_1:47277124-47277143 | Msa1022030:intron | 35.0% | |
| ! | TGCAACGGGTAATGTATTTT+AGG | + | chr7_1:47277268-47277287 | None:intergenic | 35.0% |
| TAATCATACCTTCGGAATTC+AGG | + | chr7_1:47277345-47277364 | None:intergenic | 35.0% | |
| AATTAACGTCTGCCCTATTA+TGG | + | chr7_1:47277514-47277533 | None:intergenic | 35.0% | |
| CCCTGTTCTTAATTTCACTT+TGG | - | chr7_1:47277598-47277617 | Msa1022030:intron | 35.0% | |
| ! | CTCACTTCTTTTACCGATAA+AGG | + | chr7_1:47277628-47277647 | None:intergenic | 35.0% |
| GCAGAAGATTATATTTGAGG+CGG | - | chr7_1:47277672-47277691 | Msa1022030:intron | 35.0% | |
| AGATCAAGACATTATCAAGC+TGG | - | chr7_1:47277754-47277773 | Msa1022030:intron | 35.0% | |
| GATAAACTTCTAATCGTGTG+TGG | - | chr7_1:47277838-47277857 | Msa1022030:intron | 35.0% | |
| CAAATGGCTAATCCACTTAT+AGG | - | chr7_1:47278037-47278056 | Msa1022030:intron | 35.0% | |
| TAATGTTTATGTTGGAACGC+TGG | - | chr7_1:47278273-47278292 | Msa1022030:intron | 35.0% | |
| TTCCATCAATATTTCCACCA+GGG | + | chr7_1:47278345-47278364 | None:intergenic | 35.0% | |
| TTTCCATCAATATTTCCACC+AGG | + | chr7_1:47278346-47278365 | None:intergenic | 35.0% | |
| TGGTGGAAATATTGATGGAA+AGG | - | chr7_1:47278345-47278364 | Msa1022030:intron | 35.0% | |
| AATTCCCAAATACCAAGTTC+AGG | + | chr7_1:47278379-47278398 | None:intergenic | 35.0% | |
| TGAACTTGGTATTTGGGAAT+TGG | - | chr7_1:47278378-47278397 | Msa1022030:intron | 35.0% | |
| GTATTTGGGAATTGGATCTA+AGG | - | chr7_1:47278386-47278405 | Msa1022030:intron | 35.0% | |
| CTGTAGGGTACAAATAGAAA+AGG | + | chr7_1:47278421-47278440 | None:intergenic | 35.0% | |
| ! | CTTTTCTATTTGTACCCTAC+AGG | - | chr7_1:47278419-47278438 | Msa1022030:intron | 35.0% |
| GAAGTTATTGAGAAATGCTC+AGG | - | chr7_1:47278469-47278488 | Msa1022030:intron | 35.0% | |
| AGAAATGCTCAGGTAAATTC+TGG | - | chr7_1:47278479-47278498 | Msa1022030:intron | 35.0% | |
| !!! | AATTATTTTCAGGTTGTGCC+GGG | - | chr7_1:47278595-47278614 | Msa1022030:CDS | 35.0% |
| GGTTTGATTGCTCATAAAGA+TGG | - | chr7_1:47278714-47278733 | Msa1022030:intron | 35.0% | |
| CATCTGCAAGAACATGTAAA+TGG | + | chr7_1:47278891-47278910 | None:intergenic | 35.0% | |
| TGCAGATGTGTGAAATGTAA+TGG | - | chr7_1:47278903-47278922 | Msa1022030:CDS | 35.0% | |
| CTTAACTGTGAAACGTGTAA+TGG | - | chr7_1:47278969-47278988 | Msa1022030:intron | 35.0% | |
| AATCTTGCTACCAGACTTAA+AGG | + | chr7_1:47279440-47279459 | None:intergenic | 35.0% | |
| CAAATAGTATAAGTTTCGGC+AGG | + | chr7_1:47279516-47279535 | None:intergenic | 35.0% | |
| AAGGATACATCATACATGCA+AGG | + | chr7_1:47279549-47279568 | None:intergenic | 35.0% | |
| ATAAAATGTGCTGTATGTCG+AGG | - | chr7_1:47279948-47279967 | Msa1022030:intron | 35.0% | |
| ! | TGAGTGTTTAAGGTGTAAGT+TGG | - | chr7_1:47279991-47280010 | Msa1022030:intron | 35.0% |
| ! | CAGGTTAGGCCTTAAATTTT+TGG | - | chr7_1:47280036-47280055 | Msa1022030:intron | 35.0% |
| !!! | GGCCTTAAATTTTTGGTTGA+TGG | - | chr7_1:47280043-47280062 | Msa1022030:intron | 35.0% |
| ATTCATCTGAAAACCATGTC+AGG | + | chr7_1:47280077-47280096 | None:intergenic | 35.0% | |
| AGTCTTTGCTCCTAACTATT+TGG | + | chr7_1:47280248-47280267 | None:intergenic | 35.0% | |
| GATCTATGGAAAACTTCATC+CGG | + | chr7_1:47280558-47280577 | None:intergenic | 35.0% | |
| ! | GAAGTTTTCCATAGATCCAA+AGG | - | chr7_1:47280561-47280580 | Msa1022030:intron | 35.0% |
| ATTGAACTCCTTTGGATCTA+TGG | + | chr7_1:47280572-47280591 | None:intergenic | 35.0% | |
| AAAGAATCAGCAAAAAAGGC+AGG | + | chr7_1:47280624-47280643 | None:intergenic | 35.0% | |
| ACATACAATCTCAGTTGTTC+CGG | - | chr7_1:47280722-47280741 | Msa1022030:CDS | 35.0% | |
| ! | ATTACCCCTCTAGATTTTGT+TGG | - | chr7_1:47280829-47280848 | Msa1022030:CDS | 35.0% |
| ! | TTACCCCTCTAGATTTTGTT+GGG | - | chr7_1:47280830-47280849 | Msa1022030:CDS | 35.0% |
| !!! | AGCATGTTTTTTGGTTTGAG+GGG | - | chr7_1:47280954-47280973 | Msa1022030:intron | 35.0% |
| GCCAATGGATAATACAACAA+AGG | + | chr7_1:47280991-47281010 | None:intergenic | 35.0% | |
| !! | GTATTATCCATTGGCTTGTA+AGG | - | chr7_1:47280996-47281015 | Msa1022030:intron | 35.0% |
| CATGAGATTTAATCATGCAC+TGG | + | chr7_1:47281075-47281094 | None:intergenic | 35.0% | |
| ACAAGCCATGAATAATCAGA+CGG | + | chr7_1:47281102-47281121 | None:intergenic | 35.0% | |
| AATGCACCGTTCTCCATAAT+TGG | - | chr7_1:47276460-47276479 | Msa1022030:three_prime_UTR | 40.0% | |
| ATGCACCGTTCTCCATAATT+GGG | - | chr7_1:47276461-47276480 | Msa1022030:three_prime_UTR | 40.0% | |
| AGAGACCCAATTATGGAGAA+CGG | + | chr7_1:47276469-47276488 | None:intergenic | 40.0% | |
| TAGAAGAGGTTGTTCCATGA+TGG | + | chr7_1:47276499-47276518 | None:intergenic | 40.0% | |
| ATGGAACAACCTCTTCTATC+AGG | - | chr7_1:47276501-47276520 | Msa1022030:three_prime_UTR | 40.0% | |
| TTGGGAATCAGAGTGGAAAA+TGG | - | chr7_1:47276664-47276683 | Msa1022030:exon | 40.0% | |
| TCAACACTTACACAAGTTCC+AGG | + | chr7_1:47276729-47276748 | None:intergenic | 40.0% | |
| GTTTCTATCCTCCTGTTCAT+GGG | - | chr7_1:47276787-47276806 | Msa1022030:CDS | 40.0% | |
| TTTCTATCCTCCTGTTCATG+GGG | - | chr7_1:47276788-47276807 | Msa1022030:CDS | 40.0% | |
| GAACAAAAGAACATACCAGC+AGG | + | chr7_1:47276840-47276859 | None:intergenic | 40.0% | |
| TGAAACTAGACTGTGCATGA+TGG | - | chr7_1:47277416-47277435 | Msa1022030:intron | 40.0% | |
| TCACTTTGGTCGTCCTTTAT+CGG | - | chr7_1:47277612-47277631 | Msa1022030:intron | 40.0% | |
| ! | ATATTTGAGGCGGAAAGAAC+AGG | - | chr7_1:47277682-47277701 | Msa1022030:intron | 40.0% |
| ATCCACTTATAGGGAAACCT+TGG | - | chr7_1:47278047-47278066 | Msa1022030:intron | 40.0% | |
| ATCCAAGGTTTCCCTATAAG+TGG | + | chr7_1:47278052-47278071 | None:intergenic | 40.0% | |
| TCGTATCTCTACTTCATCCA+AGG | + | chr7_1:47278067-47278086 | None:intergenic | 40.0% | |
| TCAATATTTCCACCAGGGTA+TGG | + | chr7_1:47278340-47278359 | None:intergenic | 40.0% | |
| TACCCTGGTGGAAATATTGA+TGG | - | chr7_1:47278340-47278359 | Msa1022030:intron | 40.0% | |
| AAGGATAAAGGACCTGAACT+TGG | - | chr7_1:47278364-47278383 | Msa1022030:intron | 40.0% | |
| AAGGACCTGAACTTGGTATT+TGG | - | chr7_1:47278371-47278390 | Msa1022030:intron | 40.0% | |
| AGGACCTGAACTTGGTATTT+GGG | - | chr7_1:47278372-47278391 | Msa1022030:intron | 40.0% | |
| ACTCAGTGTCCTAGTTGTTA+TGG | - | chr7_1:47278687-47278706 | Msa1022030:intron | 40.0% | |
| AGTGTCCTAGTTGTTATGGA+AGG | - | chr7_1:47278691-47278710 | Msa1022030:intron | 40.0% | |
| GTGTCCTAGTTGTTATGGAA+GGG | - | chr7_1:47278692-47278711 | Msa1022030:intron | 40.0% | |
| TGTCCTAGTTGTTATGGAAG+GGG | - | chr7_1:47278693-47278712 | Msa1022030:intron | 40.0% | |
| AAACCCCTTCCATAACAACT+AGG | + | chr7_1:47278699-47278718 | None:intergenic | 40.0% | |
| CAAATGTTGAATTCAAGCCG+AGG | - | chr7_1:47278802-47278821 | Msa1022030:intron | 40.0% | |
| !! | CTGCATTTCATTTCTGAAGC+TGG | - | chr7_1:47278838-47278857 | Msa1022030:CDS | 40.0% |
| ! | TGTGAAACGTGTAATGGAAG+TGG | - | chr7_1:47278975-47278994 | Msa1022030:intron | 40.0% |
| ! | ACCAAATGGGCTTGCTTAAT+GGG | + | chr7_1:47279762-47279781 | None:intergenic | 40.0% |
| ! | AACCAAATGGGCTTGCTTAA+TGG | + | chr7_1:47279763-47279782 | None:intergenic | 40.0% |
| ! | CAAAATGTGTGTGTGTTGAC+AGG | - | chr7_1:47280481-47280500 | Msa1022030:intron | 40.0% |
| ACAGGAAGACACTTTCAACT+CGG | - | chr7_1:47280499-47280518 | Msa1022030:intron | 40.0% | |
| CGGAAAGTAAGTGCAACTAA+AGG | - | chr7_1:47280519-47280538 | Msa1022030:intron | 40.0% | |
| AGTAAGTGCAACTAAAGGAG+CGG | - | chr7_1:47280524-47280543 | Msa1022030:intron | 40.0% | |
| TATTGTAGGAAATGACAGGG+AGG | - | chr7_1:47280791-47280810 | Msa1022030:CDS | 40.0% | |
| TGACAGGGAGGTTTACTTAA+AGG | - | chr7_1:47280803-47280822 | Msa1022030:CDS | 40.0% | |
| ! | TACCCCTCTAGATTTTGTTG+GGG | - | chr7_1:47280831-47280850 | Msa1022030:CDS | 40.0% |
| AAGCCCCAACAAAATCTAGA+GGG | + | chr7_1:47280837-47280856 | None:intergenic | 40.0% | |
| TAAGCCCCAACAAAATCTAG+AGG | + | chr7_1:47280838-47280857 | None:intergenic | 40.0% | |
| AACTTCAACCACTCCAAACA+AGG | + | chr7_1:47280864-47280883 | None:intergenic | 40.0% | |
| GCTTGTAAGGACTACAGTTA+TGG | - | chr7_1:47281009-47281028 | Msa1022030:intron | 40.0% | |
| GTTGTCCGTCTGATTATTCA+TGG | - | chr7_1:47281094-47281113 | Msa1022030:five_prime_UTR | 40.0% | |
| GGTCTCTGTCTAAACCATCA+TGG | - | chr7_1:47276482-47276501 | Msa1022030:three_prime_UTR | 45.0% | |
| GAATTGGTTGGGAATCAGAG+TGG | - | chr7_1:47276657-47276676 | Msa1022030:three_prime_UTR | 45.0% | |
| ATGGAGCTCATATGAGCATG+TGG | - | chr7_1:47276683-47276702 | Msa1022030:CDS | 45.0% | |
| TGGAGCTCATATGAGCATGT+GGG | - | chr7_1:47276684-47276703 | Msa1022030:CDS | 45.0% | |
| AAACCTGCAGAAGAAGGAAC+AGG | + | chr7_1:47276771-47276790 | None:intergenic | 45.0% | |
| GGATAGAAACCTGCAGAAGA+AGG | + | chr7_1:47276777-47276796 | None:intergenic | 45.0% | |
| GGTTTCTATCCTCCTGTTCA+TGG | - | chr7_1:47276786-47276805 | Msa1022030:CDS | 45.0% | |
| TTCTATCCTCCTGTTCATGG+GGG | - | chr7_1:47276789-47276808 | Msa1022030:CDS | 45.0% | |
| AAGAACATACCAGCAGGATC+AGG | + | chr7_1:47276834-47276853 | None:intergenic | 45.0% | |
| GTTGCTTATCAAGGCGGATA+TGG | - | chr7_1:47277297-47277316 | Msa1022030:intron | 45.0% | |
| GGATATGGAGGAGATTATGG+TGG | - | chr7_1:47277312-47277331 | Msa1022030:intron | 45.0% | |
| ATACCTTCGGAATTCAGGTC+TGG | + | chr7_1:47277340-47277359 | None:intergenic | 45.0% | |
| GCTACTCTTCACTTCGTAGT+AGG | - | chr7_1:47277808-47277827 | Msa1022030:intron | 45.0% | |
| ACGTTGGTCATCGTTGTTGT+TGG | - | chr7_1:47278203-47278222 | Msa1022030:intron | 45.0% | |
| ! | CGTTGGTCATCGTTGTTGTT+GGG | - | chr7_1:47278204-47278223 | Msa1022030:intron | 45.0% |
| ! | GTTGGTCATCGTTGTTGTTG+GGG | - | chr7_1:47278205-47278224 | Msa1022030:intron | 45.0% |
| GAATCTTCCATGTTCGAGCA+GGG | + | chr7_1:47278237-47278256 | None:intergenic | 45.0% | |
| TGAATCTTCCATGTTCGAGC+AGG | + | chr7_1:47278238-47278257 | None:intergenic | 45.0% | |
| TGCTCGAACATGGAAGATTC+AGG | - | chr7_1:47278237-47278256 | Msa1022030:intron | 45.0% | |
| ! | TTTTCACGCACTTCCCTGTA+GGG | + | chr7_1:47278436-47278455 | None:intergenic | 45.0% |
| TTACCTCCCCCTTAAAACCT+TGG | - | chr7_1:47278571-47278590 | Msa1022030:CDS | 45.0% | |
| !!! | TTTCCAAGGTTTTAAGGGGG+AGG | + | chr7_1:47278577-47278596 | None:intergenic | 45.0% |
| TGTGCTACATGCAATGCTGA+TGG | - | chr7_1:47278633-47278652 | Msa1022030:CDS | 45.0% | |
| TCCCATTAAGCAAGCCCATT+TGG | - | chr7_1:47279758-47279777 | Msa1022030:intron | 45.0% | |
| TGCGGTGACTCCAAATAGTT+AGG | - | chr7_1:47280235-47280254 | Msa1022030:CDS | 45.0% | |
| ! | CAAAAAAGGCAGGAGTGCAT+TGG | + | chr7_1:47280614-47280633 | None:intergenic | 45.0% |
| CTCACAAATGACTCTTGCAG+TGG | + | chr7_1:47280700-47280719 | None:intergenic | 45.0% | |
| AGCCCCAACAAAATCTAGAG+GGG | + | chr7_1:47280836-47280855 | None:intergenic | 45.0% | |
| TTGGGGCTTATGTCCTTGTT+TGG | - | chr7_1:47280848-47280867 | Msa1022030:CDS | 45.0% | |
| ! | GCTTATGTCCTTGTTTGGAG+TGG | - | chr7_1:47280853-47280872 | Msa1022030:CDS | 45.0% |
| CTGTAGTCCTTACAAGCCAA+TGG | + | chr7_1:47281006-47281025 | None:intergenic | 45.0% | |
| TATGAGCATGTGGGTCGAAC+AGG | - | chr7_1:47276693-47276712 | Msa1022030:CDS | 50.0% | |
| CGAACAGGTTCTGCATATCC+TGG | - | chr7_1:47276708-47276727 | Msa1022030:CDS | 50.0% | |
| GCAGATGGGTCAACGTTTAC+AGG | + | chr7_1:47276941-47276960 | None:intergenic | 50.0% | |
| GCTGTAGCATAGTAGCCTAG+CGG | - | chr7_1:47277076-47277095 | Msa1022030:intron | 50.0% | |
| ATTACCCGTTGCAGTGCAAG+CGG | - | chr7_1:47277275-47277294 | Msa1022030:intron | 50.0% | |
| GTGCAAGCGGTTGCTTATCA+AGG | - | chr7_1:47277288-47277307 | Msa1022030:intron | 50.0% | |
| CAAGCGGTTGCTTATCAAGG+CGG | - | chr7_1:47277291-47277310 | Msa1022030:intron | 50.0% | |
| GCTTATCAAGGCGGATATGG+AGG | - | chr7_1:47277300-47277319 | Msa1022030:intron | 50.0% | |
| GGCGGATATGGAGGAGATTA+TGG | - | chr7_1:47277309-47277328 | Msa1022030:intron | 50.0% | |
| GAACCAGACCTGAATTCCGA+AGG | - | chr7_1:47277334-47277353 | Msa1022030:intron | 50.0% | |
| AAAGAGACAGAGCCATACCC+TGG | - | chr7_1:47278325-47278344 | Msa1022030:intron | 50.0% | |
| ! | CTTTTCACGCACTTCCCTGT+AGG | + | chr7_1:47278437-47278456 | None:intergenic | 50.0% |
| TGCAATGCTGATGGAGAACC+TGG | - | chr7_1:47278642-47278661 | Msa1022030:intron | 50.0% | |
| CAAGCCGAGGTCAAATGTCT+AGG | - | chr7_1:47278815-47278834 | Msa1022030:intron | 50.0% | |
| GCAGCCTAGACATTTGACCT+CGG | + | chr7_1:47278822-47278841 | None:intergenic | 50.0% | |
| AAGCTTCCTTGTGCGACTTG+TGG | - | chr7_1:47278933-47278952 | Msa1022030:CDS | 50.0% | |
| ! | ACACATGCTCCAATGGACTC+TGG | - | chr7_1:47279091-47279110 | Msa1022030:CDS | 50.0% |
| CTAAGCAGGGCCTTTAAGTC+TGG | - | chr7_1:47279427-47279446 | Msa1022030:intron | 50.0% | |
| GATGGGATAGTTGCCTGACA+TGG | - | chr7_1:47280061-47280080 | Msa1022030:intron | 50.0% | |
| TAAAGGAGCGGCATCAGTAC+CGG | - | chr7_1:47280536-47280555 | Msa1022030:intron | 50.0% | |
| CAAATGACTCTTGCAGTGGC+AGG | + | chr7_1:47280696-47280715 | None:intergenic | 50.0% | |
| GCTCCTGTTCCTTCTTCTGC+AGG | - | chr7_1:47276765-47276784 | Msa1022030:CDS | 55.0% | |
| TCCTCCTGTTCATGGGGGTT+TGG | - | chr7_1:47276794-47276813 | Msa1022030:CDS | 55.0% | |
| ACCAAACCCCCATGAACAGG+AGG | + | chr7_1:47276798-47276817 | None:intergenic | 55.0% | |
| CCAACCAAACCCCCATGAAC+AGG | + | chr7_1:47276801-47276820 | None:intergenic | 55.0% | |
| ! | CCTGTTCATGGGGGTTTGGT+TGG | - | chr7_1:47276798-47276817 | Msa1022030:CDS | 55.0% |
| TCATCTGAGCCTGATCCTGC+TGG | - | chr7_1:47276822-47276841 | Msa1022030:CDS | 55.0% | |
| AGCAACCGCTTGCACTGCAA+CGG | + | chr7_1:47277283-47277302 | None:intergenic | 55.0% | |
| TCTTCCATGTTCGAGCAGGG+CGG | + | chr7_1:47278234-47278253 | None:intergenic | 55.0% | |
| ACAGACTATTCCTCCTCGCC+CGG | + | chr7_1:47278616-47278635 | None:intergenic | 55.0% | |
| CGAGATCCACAAGTCGCACA+AGG | + | chr7_1:47278942-47278961 | None:intergenic | 55.0% | |
| TGTGCGACTTGTGGATCTCG+TGG | - | chr7_1:47278942-47278961 | Msa1022030:intron | 55.0% | |
| ! | GACATGGTGACGCGAGTTAC+CGG | + | chr7_1:47280744-47280763 | None:intergenic | 55.0% |
| GCGTCACCATGTCTCATCGT+CGG | - | chr7_1:47280751-47280770 | Msa1022030:CDS | 55.0% | |
| GGATTGCCGACGATGAGACA+TGG | + | chr7_1:47280760-47280779 | None:intergenic | 55.0% | |
| GCAACCGCTTGCACTGCAAC+GGG | + | chr7_1:47277282-47277301 | None:intergenic | 60.0% | |
| GAGACAGAGCCATACCCTGG+TGG | - | chr7_1:47278328-47278347 | Msa1022030:intron | 60.0% | |
| !!! | TTTTCAGGTTGTGCCGGGCG+AGG | - | chr7_1:47278600-47278619 | Msa1022030:CDS | 60.0% |
| GTAGCCGCCCTGCTCGAACA+TGG | - | chr7_1:47278227-47278246 | Msa1022030:intron | 65.0% | |
| ! | TCAGGTTGTGCCGGGCGAGG+AGG | - | chr7_1:47278603-47278622 | Msa1022030:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 47276372 | 47281193 | 47276372 | ID=Msa1022030;Name=Msa1022030 |
| chr7_1 | mRNA | 47276372 | 47281193 | 47276372 | ID=Msa1022030-mRNA-1;Parent=Msa1022030;Name=Msa1022030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=129|0.83|0.85|1|1|1|7|306|399 |
| chr7_1 | exon | 47276372 | 47277062 | 47276372 | ID=Msa1022030-mRNA-1:exon:9327;Parent=Msa1022030-mRNA-1 |
| chr7_1 | exon | 47278532 | 47278657 | 47278532 | ID=Msa1022030-mRNA-1:exon:9326;Parent=Msa1022030-mRNA-1 |
| chr7_1 | exon | 47278817 | 47278958 | 47278817 | ID=Msa1022030-mRNA-1:exon:9325;Parent=Msa1022030-mRNA-1 |
| chr7_1 | exon | 47279075 | 47279334 | 47279075 | ID=Msa1022030-mRNA-1:exon:9324;Parent=Msa1022030-mRNA-1 |
| chr7_1 | exon | 47280210 | 47280276 | 47280210 | ID=Msa1022030-mRNA-1:exon:9323;Parent=Msa1022030-mRNA-1 |
| chr7_1 | exon | 47280722 | 47280919 | 47280722 | ID=Msa1022030-mRNA-1:exon:9322;Parent=Msa1022030-mRNA-1 |
| chr7_1 | exon | 47281043 | 47281193 | 47281043 | ID=Msa1022030-mRNA-1:exon:9321;Parent=Msa1022030-mRNA-1 |
| chr7_1 | five_prime_UTR | 47281065 | 47281193 | 47281065 | ID=Msa1022030-mRNA-1:five_prime_utr;Parent=Msa1022030-mRNA-1 |
| chr7_1 | CDS | 47281043 | 47281064 | 47281043 | ID=Msa1022030-mRNA-1:cds;Parent=Msa1022030-mRNA-1 |
| chr7_1 | CDS | 47280722 | 47280919 | 47280722 | ID=Msa1022030-mRNA-1:cds;Parent=Msa1022030-mRNA-1 |
| chr7_1 | CDS | 47280210 | 47280276 | 47280210 | ID=Msa1022030-mRNA-1:cds;Parent=Msa1022030-mRNA-1 |
| chr7_1 | CDS | 47279075 | 47279334 | 47279075 | ID=Msa1022030-mRNA-1:cds;Parent=Msa1022030-mRNA-1 |
| chr7_1 | CDS | 47278817 | 47278958 | 47278817 | ID=Msa1022030-mRNA-1:cds;Parent=Msa1022030-mRNA-1 |
| chr7_1 | CDS | 47278532 | 47278657 | 47278532 | ID=Msa1022030-mRNA-1:cds;Parent=Msa1022030-mRNA-1 |
| chr7_1 | CDS | 47276678 | 47277062 | 47276678 | ID=Msa1022030-mRNA-1:cds;Parent=Msa1022030-mRNA-1 |
| chr7_1 | three_prime_UTR | 47276372 | 47276677 | 47276372 | ID=Msa1022030-mRNA-1:three_prime_utr;Parent=Msa1022030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
