AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647030 MtrunA17_Chr4g0035551 97.238 362 10 0 1 362 1 362 0.0 742
Msa0647030 MtrunA17_Chr1g0155781 70.572 367 96 6 1 359 1 363 0.0 532
Msa0647030 MtrunA17_Chr4g0036281 67.663 368 77 7 1 363 1 331 1.17e-175 491
Msa0647030 MtrunA17_Chr4g0036731 68.407 364 71 7 3 363 5 327 1.65e-175 490
Msa0647030 MtrunA17_Chr4g0037291 68.044 363 76 6 4 363 47 372 2.48e-175 492
Msa0647030 MtrunA17_Chr1g0199131 54.017 361 155 6 10 363 15 371 4.74e-141 405
Msa0647030 MtrunA17_Chr1g0208261 42.333 300 147 7 50 341 94 375 2.65e-67 220
Msa0647030 MtrunA17_Chr4g0041061 38.592 355 177 13 5 348 12 336 3.87e-66 213
Msa0647030 MtrunA17_Chr4g0024411 40.063 317 152 10 54 353 44 339 1.77e-65 211
Msa0647030 MtrunA17_Chr4g0040881 39.634 328 167 12 32 348 29 336 2.27e-65 211
Msa0647030 MtrunA17_Chr4g0070441 37.634 372 190 11 1 355 1 347 1.50e-64 209
Msa0647030 MtrunA17_Chr4g0041081 39.062 320 167 11 45 353 39 341 3.90e-64 207
Msa0647030 MtrunA17_Chr0c27g0493921 37.838 370 188 11 1 353 1 345 5.49e-64 207
Msa0647030 MtrunA17_Chr3g0134231 36.103 349 191 9 8 341 10 341 1.11e-63 210
Msa0647030 MtrunA17_Chr5g0405751 39.252 321 166 11 45 353 37 340 1.34e-63 206
Msa0647030 MtrunA17_Chr4g0053311 41.346 312 134 11 50 341 39 321 3.43e-63 205
Msa0647030 MtrunA17_Chr3g0144281 37.119 361 193 12 4 353 7 344 3.69e-63 205
Msa0647030 MtrunA17_Chr4g0041481 37.107 318 175 8 38 348 32 331 3.36e-62 202
Msa0647030 MtrunA17_Chr4g0040851 33.146 356 210 9 5 353 22 356 1.75e-61 201
Msa0647030 MtrunA17_Chr4g0041521 37.086 302 167 7 54 348 46 331 3.90e-61 199
Msa0647030 MtrunA17_Chr4g0060251 39.228 311 163 9 54 353 46 341 4.98e-61 199
Msa0647030 MtrunA17_Chr3g0142071 37.730 326 160 12 48 353 50 352 7.64e-59 197
Msa0647030 MtrunA17_Chr3g0116551 35.294 357 190 11 7 348 6 336 5.64e-58 192
Msa0647030 MtrunA17_Chr4g0041471 35.831 307 169 9 54 348 43 333 1.40e-57 190
Msa0647030 MtrunA17_Chr2g0315491 37.417 302 168 6 54 348 45 332 1.50e-57 190
Msa0647030 MtrunA17_Chr4g0058081 38.033 305 157 10 58 348 49 335 4.40e-56 187
Msa0647030 MtrunA17_Chr2g0325121 32.782 363 208 9 5 359 4 338 3.16e-55 184
Msa0647030 MtrunA17_Chr8g0379151 33.875 369 200 13 5 352 23 368 6.85e-55 184
Msa0647030 MtrunA17_Chr2g0283741 32.527 372 195 14 8 350 8 352 3.40e-54 182
Msa0647030 MtrunA17_Chr2g0283901 35.826 321 172 11 48 353 51 352 3.93e-54 185
Msa0647030 MtrunA17_Chr1g0153011 36.066 366 165 13 1 341 1 322 9.41e-54 183
Msa0647030 MtrunA17_Chr2g0319991 36.336 333 179 14 41 358 30 344 1.69e-52 177
Msa0647030 MtrunA17_Chr2g0283671 41.629 221 111 5 122 341 5 208 1.19e-50 169
Msa0647030 MtrunA17_Chr7g0248391 32.288 319 179 9 42 348 36 329 1.94e-46 161
Msa0647030 MtrunA17_Chr2g0311471 31.536 371 203 15 4 353 2 342 3.14e-45 158
Msa0647030 MtrunA17_Chr7g0248811 31.230 317 186 8 42 348 33 327 5.72e-43 152
Msa0647030 MtrunA17_Chr2g0311381 31.795 390 197 17 1 359 1 352 7.12e-43 152
Msa0647030 MtrunA17_Chr1g0156161 41.441 222 110 7 129 347 47 251 2.75e-41 145
Msa0647030 MtrunA17_Chr2g0311391 29.584 409 200 17 4 362 2 372 1.17e-39 144
Msa0647030 MtrunA17_Chr8g0379671 48.529 136 54 4 172 306 23 143 2.50e-37 132
Msa0647030 MtrunA17_Chr2g0283751 31.274 259 151 7 6 256 12 251 1.93e-34 128
Msa0647030 MtrunA17_Chr7g0271031 30.208 288 154 14 95 353 110 379 4.31e-24 102
Msa0647030 MtrunA17_Chr7g0271041 29.021 286 160 12 95 353 66 335 5.41e-23 98.6
Msa0647030 MtrunA17_Chr1g0156771 48.246 114 46 5 129 239 53 156 3.00e-22 92.0
Msa0647030 MtrunA17_Chr2g0283661 36.879 141 79 3 54 184 39 179 2.07e-19 87.0
Msa0647030 MtrunA17_Chr2g0283661 34.783 115 67 3 244 357 161 268 1.26e-13 70.5
Msa0647030 MtrunA17_Chr2g0311091 30.808 198 106 7 1 181 1 184 4.67e-19 84.0
Msa0647030 MtrunA17_Chr7g0248421 32.258 155 91 3 155 307 57 199 8.31e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647030 AT2G21430.1 73.889 360 91 3 1 358 1 359 0.0 560
Msa0647030 AT4G39090.1 73.389 357 93 2 8 362 10 366 0.0 553
Msa0647030 AT4G16190.1 67.292 373 112 4 1 363 1 373 0.0 508
Msa0647030 AT3G54940.2 58.449 361 133 7 6 356 9 362 2.94e-153 436
Msa0647030 AT3G54940.3 53.818 275 111 6 6 271 9 276 1.28e-99 296
Msa0647030 AT3G45310.1 38.764 356 183 11 10 348 11 348 4.06e-67 216
Msa0647030 AT5G60360.1 39.339 333 174 9 31 353 39 353 4.29e-67 216
Msa0647030 AT3G19400.1 40.645 310 154 9 57 353 53 345 2.97e-66 214
Msa0647030 AT5G60360.3 39.755 327 169 9 31 347 39 347 6.31e-66 213
Msa0647030 AT3G45310.2 38.418 354 183 11 10 346 11 346 8.87e-66 212
Msa0647030 AT5G60360.2 39.571 326 169 9 31 346 39 346 1.35e-65 212
Msa0647030 AT3G19390.1 38.227 361 182 12 8 353 8 342 1.01e-64 213
Msa0647030 AT1G20850.1 39.117 317 165 8 48 353 51 350 2.61e-64 208
Msa0647030 AT1G47128.1 38.261 345 182 8 9 341 8 333 4.99e-64 211
Msa0647030 AT1G09850.1 39.198 324 166 11 48 359 32 336 8.88e-64 209
Msa0647030 AT5G45890.1 34.426 366 191 10 1 348 3 337 1.01e-62 204
Msa0647030 AT5G43060.1 41.844 282 143 7 64 341 70 334 2.54e-62 206
Msa0647030 AT1G29090.1 39.252 321 161 12 44 348 44 346 6.78e-62 202
Msa0647030 AT1G06260.1 38.154 325 160 13 45 353 40 339 9.49e-62 201
Msa0647030 AT3G43960.1 40.956 293 152 7 56 341 49 327 1.52e-61 202
Msa0647030 AT4G35350.1 37.025 316 172 8 48 353 51 349 4.80e-61 200
Msa0647030 AT4G36880.1 39.100 289 149 6 64 341 69 341 8.57e-60 197
Msa0647030 AT3G48340.1 36.782 348 178 11 9 341 4 324 5.38e-59 195
Msa0647030 AT4G23520.1 33.696 368 194 14 5 353 10 346 4.16e-58 192
Msa0647030 AT2G27420.1 36.278 317 162 11 54 348 41 339 4.59e-57 189
Msa0647030 AT5G50260.1 39.423 312 144 11 58 348 47 334 4.53e-56 187
Msa0647030 AT1G29080.1 36.943 314 168 9 54 353 45 342 1.95e-54 182
Msa0647030 AT3G48350.1 34.857 350 187 11 7 342 3 325 2.66e-54 183
Msa0647030 AT2G34080.1 36.013 311 164 11 54 348 45 336 5.24e-53 179
Msa0647030 AT3G49340.1 34.185 313 173 11 54 351 41 335 4.04e-52 176
Msa0647030 AT4G11310.1 32.312 359 204 10 6 348 9 344 8.52e-52 176
Msa0647030 AT4G11320.2 34.921 315 172 8 48 348 56 351 2.73e-51 175
Msa0647030 AT4G11320.1 34.921 315 172 8 48 348 56 351 2.73e-51 175
Msa0647030 AT3G19400.2 40.444 225 122 4 57 276 53 270 8.12e-50 169
Msa0647030 AT4G35350.2 36.052 233 136 4 48 276 51 274 1.68e-45 157
Msa0647030 AT1G29110.1 32.154 311 166 9 54 348 44 325 2.55e-42 150
Msa0647030 AT3G48350.2 32.787 305 155 10 7 287 3 281 1.36e-38 140
Msa0647030 AT1G02305.1 30.903 288 150 15 95 352 69 337 2.00e-23 100
Msa0647030 AT4G01610.1 29.874 318 168 14 61 349 40 331 2.04e-23 100
Msa0647030 AT4G01610.2 29.560 318 169 14 61 349 40 331 3.54e-22 96.7
Msa0647030 AT1G02300.1 27.922 308 153 17 95 352 66 354 1.27e-18 86.7

Find 103 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATATATACTGCATTTA+AGG 0.130654 4_3:-52994960 None:intergenic
AACCTATTTAAACATAAGTT+TGG 0.234066 4_3:+52993629 Msa0647030:CDS
TCTCTCCAATCAAAATCTTT+TGG 0.234300 4_3:-52993878 None:intergenic
TCCCAAACTTATGTTTAAAT+AGG 0.268902 4_3:-52993631 None:intergenic
CCAAGGATGAACATGATTAC+AGG 0.304516 4_3:+52993666 Msa0647030:CDS
GGTGAGACTTGGGGAGAAAA+TGG 0.310928 4_3:+52995124 Msa0647030:CDS
CTGGAGCCTATTCGCCTATT+AGG 0.320950 4_3:+52995062 Msa0647030:CDS
TGAATACTGGCAACAATTCA+TGG 0.344244 4_3:-52995289 None:intergenic
TGATCCATGACTTGAGGATA+TGG 0.362172 4_3:-52993470 None:intergenic
GAAGAAGACTATCCTTATTC+TGG 0.363696 4_3:+52994705 Msa0647030:CDS
CCACGATCAGTACCAGAATA+AGG 0.365501 4_3:-52994717 None:intergenic
ACTAGATCATGGAGTGTTAC+TGG 0.371273 4_3:+52995027 Msa0647030:CDS
ACCTATTTAAACATAAGTTT+GGG 0.393244 4_3:+52993630 Msa0647030:CDS
AGTCTCTTTGAGCATATGTA+TGG 0.401014 4_3:-52995007 None:intergenic
GGCTTCTCCTTCATCCTAAT+AGG 0.407412 4_3:-52995076 None:intergenic
TCACAAGAACCCGGTTGCTC+TGG 0.408096 4_3:-52994612 None:intergenic
AGATTATCTGTCGGAAGAAT+CGG 0.409821 4_3:-52993854 None:intergenic
GGAGTGTTACTGGTGGGATA+TGG 0.410428 4_3:+52995037 Msa0647030:CDS
GAGTTTCGTCAGAGCGTCTT+GGG 0.410652 4_3:+52993791 Msa0647030:CDS
ATTGAATCTTCTCCGTCATC+CGG 0.411609 4_3:-52993551 None:intergenic
GGGGCTGCATTAGCATCTTT+CGG 0.417402 4_3:-52993833 None:intergenic
CCACATTAAAACATGAATAC+TGG 0.419218 4_3:-52995302 None:intergenic
GGATGAAGGAGAAGCCATAT+TGG 0.423435 4_3:+52995083 Msa0647030:CDS
TGCTAAGAAGCATCAATTGA+TGG 0.425569 4_3:+52993718 Msa0647030:CDS
GATTATCTGTCGGAAGAATC+GGG 0.426123 4_3:-52993853 None:intergenic
GTCTTGGGATTGAGAGGGGT+GGG 0.430446 4_3:+52993806 Msa0647030:CDS
CTTCATCCTAATAGGCGAAT+AGG 0.432818 4_3:-52995068 None:intergenic
TGACAAGATTAGCGGCAATC+TGG 0.437809 4_3:-52994812 None:intergenic
CAACCGGGTTCTTGTGATGC+CGG 0.438520 4_3:+52994618 Msa0647030:CDS
AACAACAATTTATAGATGTA+TGG 0.449877 4_3:+52995389 Msa0647030:three_prime_UTR
ATAGTGTGATCCAGAGCAAC+CGG 0.450276 4_3:+52994602 Msa0647030:intron
TCTTGTGATGCCGGGTGCAA+TGG 0.456716 4_3:+52994627 Msa0647030:CDS
CCTGTAATCATGTTCATCCT+TGG 0.456777 4_3:-52993666 None:intergenic
AAAACTCATGGGGTGAGACT+TGG 0.466256 4_3:+52995113 Msa0647030:CDS
GCATCAATTGATGGATCCTT+CGG 0.466749 4_3:+52993727 Msa0647030:CDS
TGTTGGAGTTTCAGTACAAC+CGG 0.469204 4_3:+52994054 Msa0647030:CDS
ATGGATCCTTCGGCGGTTCA+CGG 0.470073 4_3:+52993737 Msa0647030:CDS
AAACTCATGGGGTGAGACTT+GGG 0.470356 4_3:+52995114 Msa0647030:CDS
CGACAGGTGGTCGACGATGA+AGG 0.470944 4_3:+52993578 Msa0647030:CDS
GGTTGCAATTGCGGTAAGTA+AGG 0.473415 4_3:-52993396 None:intergenic
ATGGATACTACAAAATATGC+AGG 0.476628 4_3:+52995143 Msa0647030:CDS
GGAGTTTCGTCAGAGCGTCT+TGG 0.485762 4_3:+52993790 Msa0647030:CDS
GACGATGAAGGAGTGCGGTT+GGG 0.489192 4_3:+52993590 Msa0647030:CDS
TGGAAAATCGCAGAATAGAA+TGG 0.490821 4_3:-52993450 None:intergenic
AACCGGGTTCTTGTGATGCC+GGG 0.494687 4_3:+52994619 Msa0647030:CDS
TTACTGGTGGGATATGGATC+TGG 0.507620 4_3:+52995043 Msa0647030:CDS
TCAATTGATGCTTCTTAGCA+CGG 0.511562 4_3:-52993715 None:intergenic
TGGGAAGGTTTATTCTTCCA+AGG 0.519917 4_3:+52993649 Msa0647030:CDS
GGTGCTCACTTTCTCTCGAC+CGG 0.523916 4_3:+52994087 Msa0647030:CDS
CGACGATGAAGGAGTGCGGT+TGG 0.531274 4_3:+52993589 Msa0647030:CDS
TCTTGGGATTGAGAGGGGTG+GGG 0.535318 4_3:+52993807 Msa0647030:CDS
ATATATAGAGGTTGCAATTG+CGG 0.543125 4_3:-52993405 None:intergenic
CCTTATTCTGGTACTGATCG+TGG 0.543158 4_3:+52994717 Msa0647030:CDS
CTTTAGCACTTACTAGCAAG+AGG 0.547021 4_3:-52994843 None:intergenic
ACCGTTCTTGACAAGATTAG+CGG 0.547122 4_3:-52994820 None:intergenic
AGTACAACCGGTGCACTTGA+AGG 0.552820 4_3:+52994066 Msa0647030:CDS
AAACTCCCTCGGAGTAAGAT+CGG 0.553683 4_3:-52993774 None:intergenic
TTCTTCGCGCATCACCCCAC+CGG 0.555594 4_3:-52994688 None:intergenic
CATCAGACCACCATTGCACC+CGG 0.562811 4_3:-52994637 None:intergenic
CTTCATCGTCGACCACCTGT+CGG 0.563999 4_3:-52993577 None:intergenic
CTATTCGCCTATTAGGATGA+AGG 0.564118 4_3:+52995069 Msa0647030:CDS
TGCTCAAAGAGACTAGATCA+TGG 0.566764 4_3:+52995016 Msa0647030:CDS
CGTCTTGGGATTGAGAGGGG+TGG 0.569542 4_3:+52993805 Msa0647030:CDS
CAGAGCGTCTTGGGATTGAG+AGG 0.571278 4_3:+52993800 Msa0647030:CDS
AGAGCGTCTTGGGATTGAGA+GGG 0.574670 4_3:+52993801 Msa0647030:CDS
AGAAGATTCAATAATCCGAC+AGG 0.575409 4_3:+52993562 Msa0647030:CDS
GTCTCTTTGAGCATATGTAT+GGG 0.587803 4_3:-52995006 None:intergenic
ATTTAAACATAAGTTTGGGA+AGG 0.587990 4_3:+52993634 Msa0647030:CDS
GCCGCTAATCTTGTCAAGAA+CGG 0.589186 4_3:+52994819 Msa0647030:CDS
GTGAGCACCTTCAAGTGCAC+CGG 0.592969 4_3:-52994073 None:intergenic
AACTCATGGGGTGAGACTTG+GGG 0.593059 4_3:+52995115 Msa0647030:CDS
ACTTGTCGATTGTGATCATG+AGG 0.595475 4_3:+52994137 Msa0647030:CDS
TGGATACTACAAAATATGCA+GGG 0.599253 4_3:+52995144 Msa0647030:CDS
ACGCTCTGACGAAACTCCCT+CGG 0.599870 4_3:-52993785 None:intergenic
AGGGCTCGTGTGGATCATGT+TGG 0.600721 4_3:+52994037 Msa0647030:intron
GTATATATGCAAACATACAT+TGG 0.601664 4_3:+52994971 Msa0647030:CDS
TGTGATGCCGGGTGCAATGG+TGG 0.601772 4_3:+52994630 Msa0647030:CDS
GTGCGATGATCCATGACTTG+AGG 0.601874 4_3:-52993476 None:intergenic
TATATGCGGAGTGGACTCCA+TGG 0.603926 4_3:+52995174 Msa0647030:CDS
ATTCTCCGATCTTACTCCGA+GGG 0.607597 4_3:+52993769 Msa0647030:CDS
CACCCGGCATCACAAGAACC+CGG 0.609271 4_3:-52994621 None:intergenic
TATATGCAAACATACATTGG+AGG 0.612222 4_3:+52994974 Msa0647030:CDS
GCATTCTCTACGCCGGATGA+CGG 0.614941 4_3:+52993539 Msa0647030:CDS
GGACTCCATGGTTTCTACTG+TGG 0.626354 4_3:+52995186 Msa0647030:CDS
TCGCAGAATAGAATGGAAAG+TGG 0.626877 4_3:-52993443 None:intergenic
CGGCGTAGAGAATGCCGAGA+CGG 0.629708 4_3:-52993531 None:intergenic
TCAATTGATGGATCCTTCGG+CGG 0.633662 4_3:+52993730 Msa0647030:CDS
GATCATGGAGTGTTACTGGT+GGG 0.636411 4_3:+52995031 Msa0647030:CDS
GTAACACCGTGAACCGCCGA+AGG 0.638844 4_3:-52993743 None:intergenic
TAGTGTGATCCAGAGCAACC+GGG 0.639888 4_3:+52994603 Msa0647030:intron
CGTCTCGGCATTCTCTACGC+CGG 0.649156 4_3:+52993532 Msa0647030:CDS
CTACTGAGTAGTAATATGAA+CGG 0.654318 4_3:-52995212 None:intergenic
GGCAGCCACAGTAGAAACCA+TGG 0.655273 4_3:-52995191 None:intergenic
GAGCGTCTTGGGATTGAGAG+GGG 0.659267 4_3:+52993802 Msa0647030:CDS
AGATCATGGAGTGTTACTGG+TGG 0.667806 4_3:+52995030 Msa0647030:CDS
ATTATCTGTCGGAAGAATCG+GGG 0.668335 4_3:-52993852 None:intergenic
GGATACTACAAAATATGCAG+GGG 0.670950 4_3:+52995145 Msa0647030:CDS
AGATTCAATAATCCGACAGG+TGG 0.672731 4_3:+52993565 Msa0647030:CDS
TGCAGGGGACGAAATATATG+CGG 0.679393 4_3:+52995160 Msa0647030:CDS
GGGACGAAATATATGCGGAG+TGG 0.687467 4_3:+52995165 Msa0647030:CDS
ATAATGATTCAGGGCTCGTG+TGG 0.698479 4_3:+52994027 Msa0647030:intron
AATTCTCCGATCTTACTCCG+AGG 0.702571 4_3:+52993768 Msa0647030:CDS
TGGTCGACGATGAAGGAGTG+CGG 0.713653 4_3:+52993585 Msa0647030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTATTAATTACAAAAT+AGG - chr4_3:52994177-52994196 None:intergenic 10.0%
!! ATCTTTACAAAATTATTTAT+TGG + chr4_3:52994489-52994508 Msa0647030:intron 10.0%
!! TCTTTACAAAATTATTTATT+GGG + chr4_3:52994490-52994509 Msa0647030:intron 10.0%
!! TTATTATATGTTATCTAAAT+TGG + chr4_3:52994555-52994574 Msa0647030:intron 10.0%
!!! ATATGATTCTATTTTAAAAA+TGG + chr4_3:52995441-52995460 Msa0647030:three_prime_UTR 10.0%
!!! TATGATTCTATTTTAAAAAT+GGG + chr4_3:52995442-52995461 Msa0647030:three_prime_UTR 10.0%
!! TATACTATTAATTACAAAAT+AGG - chr4_3:52994177-52994196 None:intergenic 10.0%
!! ATCTTTACAAAATTATTTAT+TGG + chr4_3:52994489-52994508 Msa0647030:intron 10.0%
!! TCTTTACAAAATTATTTATT+GGG + chr4_3:52994490-52994509 Msa0647030:intron 10.0%
!! TTATTATATGTTATCTAAAT+TGG + chr4_3:52994555-52994574 Msa0647030:intron 10.0%
!!! ATATGATTCTATTTTAAAAA+TGG + chr4_3:52995441-52995460 Msa0647030:three_prime_UTR 10.0%
!!! TATGATTCTATTTTAAAAAT+GGG + chr4_3:52995442-52995461 Msa0647030:three_prime_UTR 10.0%
!!! GAGTTTTATTTTATATATAG+AGG - chr4_3:52993420-52993439 None:intergenic 15.0%
!! ATAATAATCATAATCACAAT+TGG - chr4_3:52993944-52993963 None:intergenic 15.0%
!!! GAGTTTTATTTTATATATAG+AGG - chr4_3:52993420-52993439 None:intergenic 15.0%
!! ATAATAATCATAATCACAAT+TGG - chr4_3:52993944-52993963 None:intergenic 15.0%
!! AACCTATTTAAACATAAGTT+TGG + chr4_3:52993629-52993648 Msa0647030:CDS 20.0%
!! ACCTATTTAAACATAAGTTT+GGG + chr4_3:52993630-52993649 Msa0647030:CDS 20.0%
!!! AAAACAAATTTTGATTGTGT+TGG + chr4_3:52993997-52994016 Msa0647030:intron 20.0%
!!! AAACAAATTTTGATTGTGTT+GGG + chr4_3:52993998-52994017 Msa0647030:intron 20.0%
!! AATTAATAGTATATCTGCTA+AGG + chr4_3:52994184-52994203 Msa0647030:intron 20.0%
!! ATACAATATCTAATAGAGTT+TGG - chr4_3:52994324-52994343 None:intergenic 20.0%
!!! AAATGCTAACTTGTAATATT+TGG + chr4_3:52994513-52994532 Msa0647030:intron 20.0%
!!! AATGCTAACTTGTAATATTT+GGG + chr4_3:52994514-52994533 Msa0647030:intron 20.0%
!! ATATGTTATCTAAATTGGTT+TGG + chr4_3:52994560-52994579 Msa0647030:intron 20.0%
!!! TTTGAGTACATTTTAAAATC+CGG + chr4_3:52994669-52994688 Msa0647030:CDS 20.0%
!!! GAGTTTTTAATTATCCAATA+TGG - chr4_3:52995100-52995119 None:intergenic 20.0%
!! ATTGGATAATTAAAAACTCA+TGG + chr4_3:52995101-52995120 Msa0647030:CDS 20.0%
!! TTGGATAATTAAAAACTCAT+GGG + chr4_3:52995102-52995121 Msa0647030:CDS 20.0%
!!! CTGTTGTTTATTTTATATTG+TGG + chr4_3:52995262-52995281 Msa0647030:three_prime_UTR 20.0%
!! AACAACAATTTATAGATGTA+TGG + chr4_3:52995389-52995408 Msa0647030:three_prime_UTR 20.0%
!! AACCTATTTAAACATAAGTT+TGG + chr4_3:52993629-52993648 Msa0647030:CDS 20.0%
!! ACCTATTTAAACATAAGTTT+GGG + chr4_3:52993630-52993649 Msa0647030:CDS 20.0%
!!! AAAACAAATTTTGATTGTGT+TGG + chr4_3:52993997-52994016 Msa0647030:intron 20.0%
!!! AAACAAATTTTGATTGTGTT+GGG + chr4_3:52993998-52994017 Msa0647030:intron 20.0%
!! AATTAATAGTATATCTGCTA+AGG + chr4_3:52994184-52994203 Msa0647030:intron 20.0%
!! ATACAATATCTAATAGAGTT+TGG - chr4_3:52994324-52994343 None:intergenic 20.0%
!!! AAATGCTAACTTGTAATATT+TGG + chr4_3:52994513-52994532 Msa0647030:intron 20.0%
!!! AATGCTAACTTGTAATATTT+GGG + chr4_3:52994514-52994533 Msa0647030:intron 20.0%
!! ATATGTTATCTAAATTGGTT+TGG + chr4_3:52994560-52994579 Msa0647030:intron 20.0%
!!! TTTGAGTACATTTTAAAATC+CGG + chr4_3:52994669-52994688 Msa0647030:CDS 20.0%
!!! GAGTTTTTAATTATCCAATA+TGG - chr4_3:52995100-52995119 None:intergenic 20.0%
!! ATTGGATAATTAAAAACTCA+TGG + chr4_3:52995101-52995120 Msa0647030:CDS 20.0%
!! TTGGATAATTAAAAACTCAT+GGG + chr4_3:52995102-52995121 Msa0647030:CDS 20.0%
!!! CTGTTGTTTATTTTATATTG+TGG + chr4_3:52995262-52995281 Msa0647030:three_prime_UTR 20.0%
!! AACAACAATTTATAGATGTA+TGG + chr4_3:52995389-52995408 Msa0647030:three_prime_UTR 20.0%
! TCCCAAACTTATGTTTAAAT+AGG - chr4_3:52993634-52993653 None:intergenic 25.0%
! ATTTAAACATAAGTTTGGGA+AGG + chr4_3:52993634-52993653 Msa0647030:CDS 25.0%
!!! ATCTTCCAAAAGATTTTGAT+TGG + chr4_3:52993873-52993892 Msa0647030:CDS 25.0%
! TATCTGATATTAATCCTTCT+AGG + chr4_3:52994268-52994287 Msa0647030:intron 25.0%
! ACTCTATTAGATATTGTATG+AGG + chr4_3:52994325-52994344 Msa0647030:intron 25.0%
!! AGCAAATTTGAAACATGATT+AGG + chr4_3:52994421-52994440 Msa0647030:intron 25.0%
!! ATGCTAACTTGTAATATTTG+GGG + chr4_3:52994515-52994534 Msa0647030:intron 25.0%
!!! TTATCTAAATTGGTTTGGAT+TGG + chr4_3:52994565-52994584 Msa0647030:intron 25.0%
! TTGCATATATACTGCATTTA+AGG - chr4_3:52994963-52994982 None:intergenic 25.0%
! GTATATATGCAAACATACAT+TGG + chr4_3:52994971-52994990 Msa0647030:CDS 25.0%
! TGGATAATTAAAAACTCATG+GGG + chr4_3:52995103-52995122 Msa0647030:CDS 25.0%
! ACTAGATTAAGATTGAATTG+AGG - chr4_3:52993355-52993374 None:intergenic 25.0%
! TCCCAAACTTATGTTTAAAT+AGG - chr4_3:52993634-52993653 None:intergenic 25.0%
! ATTTAAACATAAGTTTGGGA+AGG + chr4_3:52993634-52993653 Msa0647030:CDS 25.0%
!!! ATCTTCCAAAAGATTTTGAT+TGG + chr4_3:52993873-52993892 Msa0647030:CDS 25.0%
! TATCTGATATTAATCCTTCT+AGG + chr4_3:52994268-52994287 Msa0647030:intron 25.0%
! ACTCTATTAGATATTGTATG+AGG + chr4_3:52994325-52994344 Msa0647030:intron 25.0%
!! AGCAAATTTGAAACATGATT+AGG + chr4_3:52994421-52994440 Msa0647030:intron 25.0%
!! ATGCTAACTTGTAATATTTG+GGG + chr4_3:52994515-52994534 Msa0647030:intron 25.0%
!!! TTATCTAAATTGGTTTGGAT+TGG + chr4_3:52994565-52994584 Msa0647030:intron 25.0%
! TTGCATATATACTGCATTTA+AGG - chr4_3:52994963-52994982 None:intergenic 25.0%
! GTATATATGCAAACATACAT+TGG + chr4_3:52994971-52994990 Msa0647030:CDS 25.0%
! TGGATAATTAAAAACTCATG+GGG + chr4_3:52995103-52995122 Msa0647030:CDS 25.0%
ATATATAGAGGTTGCAATTG+CGG - chr4_3:52993408-52993427 None:intergenic 30.0%
!! TCTTTTGGAAGATTATCTGT+CGG - chr4_3:52993866-52993885 None:intergenic 30.0%
! TCTCTCCAATCAAAATCTTT+TGG - chr4_3:52993881-52993900 None:intergenic 30.0%
AGTTACTGCTGTTAAAAATC+AGG + chr4_3:52993910-52993929 Msa0647030:CDS 30.0%
!! TTGTTACTTGTTTTCCTAGA+AGG - chr4_3:52994285-52994304 None:intergenic 30.0%
!!! AGTACATTTTAAAATCCGGT+GGG + chr4_3:52994673-52994692 Msa0647030:CDS 30.0%
TATATGCAAACATACATTGG+AGG + chr4_3:52994974-52994993 Msa0647030:CDS 30.0%
ATGGATACTACAAAATATGC+AGG + chr4_3:52995143-52995162 Msa0647030:CDS 30.0%
TGGATACTACAAAATATGCA+GGG + chr4_3:52995144-52995163 Msa0647030:CDS 30.0%
CTACTGAGTAGTAATATGAA+CGG - chr4_3:52995215-52995234 None:intergenic 30.0%
CCACATTAAAACATGAATAC+TGG - chr4_3:52995305-52995324 None:intergenic 30.0%
!!! CCAGTATTCATGTTTTAATG+TGG + chr4_3:52995302-52995321 Msa0647030:three_prime_UTR 30.0%
ATATATAGAGGTTGCAATTG+CGG - chr4_3:52993408-52993427 None:intergenic 30.0%
!! TCTTTTGGAAGATTATCTGT+CGG - chr4_3:52993866-52993885 None:intergenic 30.0%
! TCTCTCCAATCAAAATCTTT+TGG - chr4_3:52993881-52993900 None:intergenic 30.0%
AGTTACTGCTGTTAAAAATC+AGG + chr4_3:52993910-52993929 Msa0647030:CDS 30.0%
!! TTGTTACTTGTTTTCCTAGA+AGG - chr4_3:52994285-52994304 None:intergenic 30.0%
!!! AGTACATTTTAAAATCCGGT+GGG + chr4_3:52994673-52994692 Msa0647030:CDS 30.0%
TATATGCAAACATACATTGG+AGG + chr4_3:52994974-52994993 Msa0647030:CDS 30.0%
ATGGATACTACAAAATATGC+AGG + chr4_3:52995143-52995162 Msa0647030:CDS 30.0%
TGGATACTACAAAATATGCA+GGG + chr4_3:52995144-52995163 Msa0647030:CDS 30.0%
CTACTGAGTAGTAATATGAA+CGG - chr4_3:52995215-52995234 None:intergenic 30.0%
CCACATTAAAACATGAATAC+TGG - chr4_3:52995305-52995324 None:intergenic 30.0%
!!! CCAGTATTCATGTTTTAATG+TGG + chr4_3:52995302-52995321 Msa0647030:three_prime_UTR 30.0%
TGGAAAATCGCAGAATAGAA+TGG - chr4_3:52993453-52993472 None:intergenic 35.0%
! TTTTCCATATCCTCAAGTCA+TGG + chr4_3:52993466-52993485 Msa0647030:exon 35.0%
AGAAGATTCAATAATCCGAC+AGG + chr4_3:52993562-52993581 Msa0647030:CDS 35.0%
TCAATTGATGCTTCTTAGCA+CGG - chr4_3:52993718-52993737 None:intergenic 35.0%
!! TGCTAAGAAGCATCAATTGA+TGG + chr4_3:52993718-52993737 Msa0647030:CDS 35.0%
AGATTATCTGTCGGAAGAAT+CGG - chr4_3:52993857-52993876 None:intergenic 35.0%
!!! GATTTTGATTGGAGAGAGAA+AGG + chr4_3:52993884-52993903 Msa0647030:CDS 35.0%
! TGGGTTTGTGATAATGATTC+AGG + chr4_3:52994017-52994036 Msa0647030:intron 35.0%
! GGGTTTGTGATAATGATTCA+GGG + chr4_3:52994018-52994037 Msa0647030:intron 35.0%
ATTGTATGAGGTTCGACTTA+AGG + chr4_3:52994337-52994356 Msa0647030:intron 35.0%
!!! GAGTACATTTTAAAATCCGG+TGG + chr4_3:52994672-52994691 Msa0647030:CDS 35.0%
!!! GTACATTTTAAAATCCGGTG+GGG + chr4_3:52994674-52994693 Msa0647030:CDS 35.0%
GAAGAAGACTATCCTTATTC+TGG + chr4_3:52994705-52994724 Msa0647030:CDS 35.0%
GTCTCTTTGAGCATATGTAT+GGG - chr4_3:52995009-52995028 None:intergenic 35.0%
AGTCTCTTTGAGCATATGTA+TGG - chr4_3:52995010-52995029 None:intergenic 35.0%
GGATACTACAAAATATGCAG+GGG + chr4_3:52995145-52995164 Msa0647030:CDS 35.0%
TGAATACTGGCAACAATTCA+TGG - chr4_3:52995292-52995311 None:intergenic 35.0%
!!! TTCATGTTTTAATGTGGTGC+TGG + chr4_3:52995308-52995327 Msa0647030:three_prime_UTR 35.0%
TGGAAAATCGCAGAATAGAA+TGG - chr4_3:52993453-52993472 None:intergenic 35.0%
! TTTTCCATATCCTCAAGTCA+TGG + chr4_3:52993466-52993485 Msa0647030:exon 35.0%
AGAAGATTCAATAATCCGAC+AGG + chr4_3:52993562-52993581 Msa0647030:CDS 35.0%
TCAATTGATGCTTCTTAGCA+CGG - chr4_3:52993718-52993737 None:intergenic 35.0%
!! TGCTAAGAAGCATCAATTGA+TGG + chr4_3:52993718-52993737 Msa0647030:CDS 35.0%
AGATTATCTGTCGGAAGAAT+CGG - chr4_3:52993857-52993876 None:intergenic 35.0%
!!! GATTTTGATTGGAGAGAGAA+AGG + chr4_3:52993884-52993903 Msa0647030:CDS 35.0%
! TGGGTTTGTGATAATGATTC+AGG + chr4_3:52994017-52994036 Msa0647030:intron 35.0%
! GGGTTTGTGATAATGATTCA+GGG + chr4_3:52994018-52994037 Msa0647030:intron 35.0%
ATTGTATGAGGTTCGACTTA+AGG + chr4_3:52994337-52994356 Msa0647030:intron 35.0%
!!! GAGTACATTTTAAAATCCGG+TGG + chr4_3:52994672-52994691 Msa0647030:CDS 35.0%
!!! GTACATTTTAAAATCCGGTG+GGG + chr4_3:52994674-52994693 Msa0647030:CDS 35.0%
GAAGAAGACTATCCTTATTC+TGG + chr4_3:52994705-52994724 Msa0647030:CDS 35.0%
GTCTCTTTGAGCATATGTAT+GGG - chr4_3:52995009-52995028 None:intergenic 35.0%
AGTCTCTTTGAGCATATGTA+TGG - chr4_3:52995010-52995029 None:intergenic 35.0%
GGATACTACAAAATATGCAG+GGG + chr4_3:52995145-52995164 Msa0647030:CDS 35.0%
TGAATACTGGCAACAATTCA+TGG - chr4_3:52995292-52995311 None:intergenic 35.0%
!!! TTCATGTTTTAATGTGGTGC+TGG + chr4_3:52995308-52995327 Msa0647030:three_prime_UTR 35.0%
TCGCAGAATAGAATGGAAAG+TGG - chr4_3:52993446-52993465 None:intergenic 40.0%
TGATCCATGACTTGAGGATA+TGG - chr4_3:52993473-52993492 None:intergenic 40.0%
! TCTTTTCATCTTCTCCGTCT+CGG + chr4_3:52993517-52993536 Msa0647030:CDS 40.0%
ATTGAATCTTCTCCGTCATC+CGG - chr4_3:52993554-52993573 None:intergenic 40.0%
AGATTCAATAATCCGACAGG+TGG + chr4_3:52993565-52993584 Msa0647030:CDS 40.0%
TGGGAAGGTTTATTCTTCCA+AGG + chr4_3:52993649-52993668 Msa0647030:CDS 40.0%
CCTGTAATCATGTTCATCCT+TGG - chr4_3:52993669-52993688 None:intergenic 40.0%
CCAAGGATGAACATGATTAC+AGG + chr4_3:52993666-52993685 Msa0647030:CDS 40.0%
! GCATCAATTGATGGATCCTT+CGG + chr4_3:52993727-52993746 Msa0647030:CDS 40.0%
ATTATCTGTCGGAAGAATCG+GGG - chr4_3:52993855-52993874 None:intergenic 40.0%
GATTATCTGTCGGAAGAATC+GGG - chr4_3:52993856-52993875 None:intergenic 40.0%
TGTTGGAGTTTCAGTACAAC+CGG + chr4_3:52994054-52994073 Msa0647030:CDS 40.0%
! GCTAAGACTGACAAGTTTTC+CGG - chr4_3:52994109-52994128 None:intergenic 40.0%
! ACTTGTCGATTGTGATCATG+AGG + chr4_3:52994137-52994156 Msa0647030:CDS 40.0%
ACCGTTCTTGACAAGATTAG+CGG - chr4_3:52994823-52994842 None:intergenic 40.0%
CTTTAGCACTTACTAGCAAG+AGG - chr4_3:52994846-52994865 None:intergenic 40.0%
TGCTCAAAGAGACTAGATCA+TGG + chr4_3:52995016-52995035 Msa0647030:CDS 40.0%
! ACTAGATCATGGAGTGTTAC+TGG + chr4_3:52995027-52995046 Msa0647030:CDS 40.0%
CTTCATCCTAATAGGCGAAT+AGG - chr4_3:52995071-52995090 None:intergenic 40.0%
CTATTCGCCTATTAGGATGA+AGG + chr4_3:52995069-52995088 Msa0647030:CDS 40.0%
TCGCAGAATAGAATGGAAAG+TGG - chr4_3:52993446-52993465 None:intergenic 40.0%
TGATCCATGACTTGAGGATA+TGG - chr4_3:52993473-52993492 None:intergenic 40.0%
! TCTTTTCATCTTCTCCGTCT+CGG + chr4_3:52993517-52993536 Msa0647030:CDS 40.0%
ATTGAATCTTCTCCGTCATC+CGG - chr4_3:52993554-52993573 None:intergenic 40.0%
AGATTCAATAATCCGACAGG+TGG + chr4_3:52993565-52993584 Msa0647030:CDS 40.0%
TGGGAAGGTTTATTCTTCCA+AGG + chr4_3:52993649-52993668 Msa0647030:CDS 40.0%
CCTGTAATCATGTTCATCCT+TGG - chr4_3:52993669-52993688 None:intergenic 40.0%
CCAAGGATGAACATGATTAC+AGG + chr4_3:52993666-52993685 Msa0647030:CDS 40.0%
! GCATCAATTGATGGATCCTT+CGG + chr4_3:52993727-52993746 Msa0647030:CDS 40.0%
ATTATCTGTCGGAAGAATCG+GGG - chr4_3:52993855-52993874 None:intergenic 40.0%
GATTATCTGTCGGAAGAATC+GGG - chr4_3:52993856-52993875 None:intergenic 40.0%
TGTTGGAGTTTCAGTACAAC+CGG + chr4_3:52994054-52994073 Msa0647030:CDS 40.0%
! GCTAAGACTGACAAGTTTTC+CGG - chr4_3:52994109-52994128 None:intergenic 40.0%
! ACTTGTCGATTGTGATCATG+AGG + chr4_3:52994137-52994156 Msa0647030:CDS 40.0%
ACCGTTCTTGACAAGATTAG+CGG - chr4_3:52994823-52994842 None:intergenic 40.0%
CTTTAGCACTTACTAGCAAG+AGG - chr4_3:52994846-52994865 None:intergenic 40.0%
TGCTCAAAGAGACTAGATCA+TGG + chr4_3:52995016-52995035 Msa0647030:CDS 40.0%
! ACTAGATCATGGAGTGTTAC+TGG + chr4_3:52995027-52995046 Msa0647030:CDS 40.0%
CTTCATCCTAATAGGCGAAT+AGG - chr4_3:52995071-52995090 None:intergenic 40.0%
CTATTCGCCTATTAGGATGA+AGG + chr4_3:52995069-52995088 Msa0647030:CDS 40.0%
GGTTGCAATTGCGGTAAGTA+AGG - chr4_3:52993399-52993418 None:intergenic 45.0%
! TCAATTGATGGATCCTTCGG+CGG + chr4_3:52993730-52993749 Msa0647030:CDS 45.0%
AATTCTCCGATCTTACTCCG+AGG + chr4_3:52993768-52993787 Msa0647030:CDS 45.0%
ATTCTCCGATCTTACTCCGA+GGG + chr4_3:52993769-52993788 Msa0647030:CDS 45.0%
AAACTCCCTCGGAGTAAGAT+CGG - chr4_3:52993777-52993796 None:intergenic 45.0%
ATAATGATTCAGGGCTCGTG+TGG + chr4_3:52994027-52994046 Msa0647030:intron 45.0%
! GCACATCGATAGTGACTTGT+AGG + chr4_3:52994373-52994392 Msa0647030:intron 45.0%
ATAGTGTGATCCAGAGCAAC+CGG + chr4_3:52994602-52994621 Msa0647030:intron 45.0%
CCACGATCAGTACCAGAATA+AGG - chr4_3:52994720-52994739 None:intergenic 45.0%
!! CCTTATTCTGGTACTGATCG+TGG + chr4_3:52994717-52994736 Msa0647030:CDS 45.0%
TGACAAGATTAGCGGCAATC+TGG - chr4_3:52994815-52994834 None:intergenic 45.0%
GCCGCTAATCTTGTCAAGAA+CGG + chr4_3:52994819-52994838 Msa0647030:CDS 45.0%
! AGATCATGGAGTGTTACTGG+TGG + chr4_3:52995030-52995049 Msa0647030:CDS 45.0%
! GATCATGGAGTGTTACTGGT+GGG + chr4_3:52995031-52995050 Msa0647030:CDS 45.0%
TTACTGGTGGGATATGGATC+TGG + chr4_3:52995043-52995062 Msa0647030:CDS 45.0%
GGCTTCTCCTTCATCCTAAT+AGG - chr4_3:52995079-52995098 None:intergenic 45.0%
GGATGAAGGAGAAGCCATAT+TGG + chr4_3:52995083-52995102 Msa0647030:CDS 45.0%
AAAACTCATGGGGTGAGACT+TGG + chr4_3:52995113-52995132 Msa0647030:CDS 45.0%
AAACTCATGGGGTGAGACTT+GGG + chr4_3:52995114-52995133 Msa0647030:CDS 45.0%
TGCAGGGGACGAAATATATG+CGG + chr4_3:52995160-52995179 Msa0647030:CDS 45.0%
GGTTGCAATTGCGGTAAGTA+AGG - chr4_3:52993399-52993418 None:intergenic 45.0%
! TCAATTGATGGATCCTTCGG+CGG + chr4_3:52993730-52993749 Msa0647030:CDS 45.0%
AATTCTCCGATCTTACTCCG+AGG + chr4_3:52993768-52993787 Msa0647030:CDS 45.0%
ATTCTCCGATCTTACTCCGA+GGG + chr4_3:52993769-52993788 Msa0647030:CDS 45.0%
AAACTCCCTCGGAGTAAGAT+CGG - chr4_3:52993777-52993796 None:intergenic 45.0%
ATAATGATTCAGGGCTCGTG+TGG + chr4_3:52994027-52994046 Msa0647030:intron 45.0%
! GCACATCGATAGTGACTTGT+AGG + chr4_3:52994373-52994392 Msa0647030:intron 45.0%
ATAGTGTGATCCAGAGCAAC+CGG + chr4_3:52994602-52994621 Msa0647030:intron 45.0%
CCACGATCAGTACCAGAATA+AGG - chr4_3:52994720-52994739 None:intergenic 45.0%
!! CCTTATTCTGGTACTGATCG+TGG + chr4_3:52994717-52994736 Msa0647030:CDS 45.0%
TGACAAGATTAGCGGCAATC+TGG - chr4_3:52994815-52994834 None:intergenic 45.0%
GCCGCTAATCTTGTCAAGAA+CGG + chr4_3:52994819-52994838 Msa0647030:CDS 45.0%
! AGATCATGGAGTGTTACTGG+TGG + chr4_3:52995030-52995049 Msa0647030:CDS 45.0%
! GATCATGGAGTGTTACTGGT+GGG + chr4_3:52995031-52995050 Msa0647030:CDS 45.0%
TTACTGGTGGGATATGGATC+TGG + chr4_3:52995043-52995062 Msa0647030:CDS 45.0%
GGCTTCTCCTTCATCCTAAT+AGG - chr4_3:52995079-52995098 None:intergenic 45.0%
GGATGAAGGAGAAGCCATAT+TGG + chr4_3:52995083-52995102 Msa0647030:CDS 45.0%
AAAACTCATGGGGTGAGACT+TGG + chr4_3:52995113-52995132 Msa0647030:CDS 45.0%
AAACTCATGGGGTGAGACTT+GGG + chr4_3:52995114-52995133 Msa0647030:CDS 45.0%
TGCAGGGGACGAAATATATG+CGG + chr4_3:52995160-52995179 Msa0647030:CDS 45.0%
GTGCGATGATCCATGACTTG+AGG - chr4_3:52993479-52993498 None:intergenic 50.0%
! GAGTTTCGTCAGAGCGTCTT+GGG + chr4_3:52993791-52993810 Msa0647030:CDS 50.0%
! AGAGCGTCTTGGGATTGAGA+GGG + chr4_3:52993801-52993820 Msa0647030:CDS 50.0%
GGGGCTGCATTAGCATCTTT+CGG - chr4_3:52993836-52993855 None:intergenic 50.0%
AGTACAACCGGTGCACTTGA+AGG + chr4_3:52994066-52994085 Msa0647030:CDS 50.0%
TAGTGTGATCCAGAGCAACC+GGG + chr4_3:52994603-52994622 Msa0647030:intron 50.0%
! GGAGTGTTACTGGTGGGATA+TGG + chr4_3:52995037-52995056 Msa0647030:CDS 50.0%
CTGGAGCCTATTCGCCTATT+AGG + chr4_3:52995062-52995081 Msa0647030:CDS 50.0%
AACTCATGGGGTGAGACTTG+GGG + chr4_3:52995115-52995134 Msa0647030:CDS 50.0%
GGTGAGACTTGGGGAGAAAA+TGG + chr4_3:52995124-52995143 Msa0647030:CDS 50.0%
GGGACGAAATATATGCGGAG+TGG + chr4_3:52995165-52995184 Msa0647030:CDS 50.0%
! TATATGCGGAGTGGACTCCA+TGG + chr4_3:52995174-52995193 Msa0647030:CDS 50.0%
GGACTCCATGGTTTCTACTG+TGG + chr4_3:52995186-52995205 Msa0647030:CDS 50.0%
GTGCGATGATCCATGACTTG+AGG - chr4_3:52993479-52993498 None:intergenic 50.0%
! GAGTTTCGTCAGAGCGTCTT+GGG + chr4_3:52993791-52993810 Msa0647030:CDS 50.0%
! AGAGCGTCTTGGGATTGAGA+GGG + chr4_3:52993801-52993820 Msa0647030:CDS 50.0%
GGGGCTGCATTAGCATCTTT+CGG - chr4_3:52993836-52993855 None:intergenic 50.0%
AGTACAACCGGTGCACTTGA+AGG + chr4_3:52994066-52994085 Msa0647030:CDS 50.0%
TAGTGTGATCCAGAGCAACC+GGG + chr4_3:52994603-52994622 Msa0647030:intron 50.0%
! GGAGTGTTACTGGTGGGATA+TGG + chr4_3:52995037-52995056 Msa0647030:CDS 50.0%
CTGGAGCCTATTCGCCTATT+AGG + chr4_3:52995062-52995081 Msa0647030:CDS 50.0%
AACTCATGGGGTGAGACTTG+GGG + chr4_3:52995115-52995134 Msa0647030:CDS 50.0%
GGTGAGACTTGGGGAGAAAA+TGG + chr4_3:52995124-52995143 Msa0647030:CDS 50.0%
GGGACGAAATATATGCGGAG+TGG + chr4_3:52995165-52995184 Msa0647030:CDS 50.0%
! TATATGCGGAGTGGACTCCA+TGG + chr4_3:52995174-52995193 Msa0647030:CDS 50.0%
GGACTCCATGGTTTCTACTG+TGG + chr4_3:52995186-52995205 Msa0647030:CDS 50.0%
GCATTCTCTACGCCGGATGA+CGG + chr4_3:52993539-52993558 Msa0647030:CDS 55.0%
CTTCATCGTCGACCACCTGT+CGG - chr4_3:52993580-52993599 None:intergenic 55.0%
TGGTCGACGATGAAGGAGTG+CGG + chr4_3:52993585-52993604 Msa0647030:CDS 55.0%
! GACGATGAAGGAGTGCGGTT+GGG + chr4_3:52993590-52993609 Msa0647030:CDS 55.0%
ATGGATCCTTCGGCGGTTCA+CGG + chr4_3:52993737-52993756 Msa0647030:CDS 55.0%
ACGCTCTGACGAAACTCCCT+CGG - chr4_3:52993788-52993807 None:intergenic 55.0%
! GGAGTTTCGTCAGAGCGTCT+TGG + chr4_3:52993790-52993809 Msa0647030:CDS 55.0%
! CAGAGCGTCTTGGGATTGAG+AGG + chr4_3:52993800-52993819 Msa0647030:CDS 55.0%
GAGCGTCTTGGGATTGAGAG+GGG + chr4_3:52993802-52993821 Msa0647030:CDS 55.0%
GTCTTGGGATTGAGAGGGGT+GGG + chr4_3:52993806-52993825 Msa0647030:CDS 55.0%
TCTTGGGATTGAGAGGGGTG+GGG + chr4_3:52993807-52993826 Msa0647030:CDS 55.0%
AGGGCTCGTGTGGATCATGT+TGG + chr4_3:52994037-52994056 Msa0647030:intron 55.0%
GTGAGCACCTTCAAGTGCAC+CGG - chr4_3:52994076-52994095 None:intergenic 55.0%
GGTGCTCACTTTCTCTCGAC+CGG + chr4_3:52994087-52994106 Msa0647030:CDS 55.0%
TCACAAGAACCCGGTTGCTC+TGG - chr4_3:52994615-52994634 None:intergenic 55.0%
CAACCGGGTTCTTGTGATGC+CGG + chr4_3:52994618-52994637 Msa0647030:CDS 55.0%
AACCGGGTTCTTGTGATGCC+GGG + chr4_3:52994619-52994638 Msa0647030:CDS 55.0%
TCTTGTGATGCCGGGTGCAA+TGG + chr4_3:52994627-52994646 Msa0647030:CDS 55.0%
CATCAGACCACCATTGCACC+CGG - chr4_3:52994640-52994659 None:intergenic 55.0%
GGCAGCCACAGTAGAAACCA+TGG - chr4_3:52995194-52995213 None:intergenic 55.0%
GCATTCTCTACGCCGGATGA+CGG + chr4_3:52993539-52993558 Msa0647030:CDS 55.0%
CTTCATCGTCGACCACCTGT+CGG - chr4_3:52993580-52993599 None:intergenic 55.0%
TGGTCGACGATGAAGGAGTG+CGG + chr4_3:52993585-52993604 Msa0647030:CDS 55.0%
! GACGATGAAGGAGTGCGGTT+GGG + chr4_3:52993590-52993609 Msa0647030:CDS 55.0%
ATGGATCCTTCGGCGGTTCA+CGG + chr4_3:52993737-52993756 Msa0647030:CDS 55.0%
ACGCTCTGACGAAACTCCCT+CGG - chr4_3:52993788-52993807 None:intergenic 55.0%
! GGAGTTTCGTCAGAGCGTCT+TGG + chr4_3:52993790-52993809 Msa0647030:CDS 55.0%
! CAGAGCGTCTTGGGATTGAG+AGG + chr4_3:52993800-52993819 Msa0647030:CDS 55.0%
GAGCGTCTTGGGATTGAGAG+GGG + chr4_3:52993802-52993821 Msa0647030:CDS 55.0%
GTCTTGGGATTGAGAGGGGT+GGG + chr4_3:52993806-52993825 Msa0647030:CDS 55.0%
TCTTGGGATTGAGAGGGGTG+GGG + chr4_3:52993807-52993826 Msa0647030:CDS 55.0%
AGGGCTCGTGTGGATCATGT+TGG + chr4_3:52994037-52994056 Msa0647030:intron 55.0%
GTGAGCACCTTCAAGTGCAC+CGG - chr4_3:52994076-52994095 None:intergenic 55.0%
GGTGCTCACTTTCTCTCGAC+CGG + chr4_3:52994087-52994106 Msa0647030:CDS 55.0%
TCACAAGAACCCGGTTGCTC+TGG - chr4_3:52994615-52994634 None:intergenic 55.0%
CAACCGGGTTCTTGTGATGC+CGG + chr4_3:52994618-52994637 Msa0647030:CDS 55.0%
AACCGGGTTCTTGTGATGCC+GGG + chr4_3:52994619-52994638 Msa0647030:CDS 55.0%
TCTTGTGATGCCGGGTGCAA+TGG + chr4_3:52994627-52994646 Msa0647030:CDS 55.0%
CATCAGACCACCATTGCACC+CGG - chr4_3:52994640-52994659 None:intergenic 55.0%
GGCAGCCACAGTAGAAACCA+TGG - chr4_3:52995194-52995213 None:intergenic 55.0%
CGGCGTAGAGAATGCCGAGA+CGG - chr4_3:52993534-52993553 None:intergenic 60.0%
CGTCTCGGCATTCTCTACGC+CGG + chr4_3:52993532-52993551 Msa0647030:CDS 60.0%
CGACAGGTGGTCGACGATGA+AGG + chr4_3:52993578-52993597 Msa0647030:CDS 60.0%
! CGACGATGAAGGAGTGCGGT+TGG + chr4_3:52993589-52993608 Msa0647030:CDS 60.0%
GTAACACCGTGAACCGCCGA+AGG - chr4_3:52993746-52993765 None:intergenic 60.0%
CGTCTTGGGATTGAGAGGGG+TGG + chr4_3:52993805-52993824 Msa0647030:CDS 60.0%
CACCCGGCATCACAAGAACC+CGG - chr4_3:52994624-52994643 None:intergenic 60.0%
TGTGATGCCGGGTGCAATGG+TGG + chr4_3:52994630-52994649 Msa0647030:CDS 60.0%
TTCTTCGCGCATCACCCCAC+CGG - chr4_3:52994691-52994710 None:intergenic 60.0%
CGGCGTAGAGAATGCCGAGA+CGG - chr4_3:52993534-52993553 None:intergenic 60.0%
CGTCTCGGCATTCTCTACGC+CGG + chr4_3:52993532-52993551 Msa0647030:CDS 60.0%
CGACAGGTGGTCGACGATGA+AGG + chr4_3:52993578-52993597 Msa0647030:CDS 60.0%
! CGACGATGAAGGAGTGCGGT+TGG + chr4_3:52993589-52993608 Msa0647030:CDS 60.0%
GTAACACCGTGAACCGCCGA+AGG - chr4_3:52993746-52993765 None:intergenic 60.0%
CGTCTTGGGATTGAGAGGGG+TGG + chr4_3:52993805-52993824 Msa0647030:CDS 60.0%
CACCCGGCATCACAAGAACC+CGG - chr4_3:52994624-52994643 None:intergenic 60.0%
TGTGATGCCGGGTGCAATGG+TGG + chr4_3:52994630-52994649 Msa0647030:CDS 60.0%
TTCTTCGCGCATCACCCCAC+CGG - chr4_3:52994691-52994710 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52993353 52995466 52993353 ID=Msa0647030;Name=Msa0647030
chr4_3 mRNA 52993353 52995466 52993353 ID=Msa0647030-mRNA-1;Parent=Msa0647030;Name=Msa0647030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=132|1|1|1|1|1|4|232|363
chr4_3 exon 52993353 52993931 52993353 ID=Msa0647030-mRNA-1:exon:13111;Parent=Msa0647030-mRNA-1
chr4_3 exon 52994039 52994158 52994039 ID=Msa0647030-mRNA-1:exon:13112;Parent=Msa0647030-mRNA-1
chr4_3 exon 52994606 52994852 52994606 ID=Msa0647030-mRNA-1:exon:13113;Parent=Msa0647030-mRNA-1
chr4_3 exon 52994957 52995466 52994957 ID=Msa0647030-mRNA-1:exon:13114;Parent=Msa0647030-mRNA-1
chr4_3 five_prime_UTR 52993353 52993484 52993353 ID=Msa0647030-mRNA-1:five_prime_utr;Parent=Msa0647030-mRNA-1
chr4_3 CDS 52993485 52993931 52993485 ID=Msa0647030-mRNA-1:cds;Parent=Msa0647030-mRNA-1
chr4_3 CDS 52994039 52994158 52994039 ID=Msa0647030-mRNA-1:cds;Parent=Msa0647030-mRNA-1
chr4_3 CDS 52994606 52994852 52994606 ID=Msa0647030-mRNA-1:cds;Parent=Msa0647030-mRNA-1
chr4_3 CDS 52994957 52995234 52994957 ID=Msa0647030-mRNA-1:cds;Parent=Msa0647030-mRNA-1
chr4_3 three_prime_UTR 52995235 52995466 52995235 ID=Msa0647030-mRNA-1:three_prime_utr;Parent=Msa0647030-mRNA-1
Gene Sequence

>Msa0647030

ATGGATCATCGCACTCTTCTTCTCTTCGTCGTTCTTTTCATCTTCTCCGTCTCGGCATTCTCTACGCCGGATGACGGAGAAGATTCAATAATCCGACAGGTGGTCGACGATGAAGGAGTGCGGTTGGGAGCAGAGCATCACTTTAACCTATTTAAACATAAGTTTGGGAAGGTTTATTCTTCCAAGGATGAACATGATTACAGGTTTAAAATCTTCAAGTCTAATCTAAACCGTGCTAAGAAGCATCAATTGATGGATCCTTCGGCGGTTCACGGTGTTACGAAATTCTCCGATCTTACTCCGAGGGAGTTTCGTCAGAGCGTCTTGGGATTGAGAGGGGTGGGGTTGCCGAAAGATGCTAATGCAGCCCCGATTCTTCCGACAGATAATCTTCCAAAAGATTTTGATTGGAGAGAGAAAGGAGCAGTTACTGCTGTTAAAAATCAGGGCTCGTGTGGATCATGTTGGAGTTTCAGTACAACCGGTGCACTTGAAGGTGCTCACTTTCTCTCGACCGGAAAACTTGTCAGTCTTAGCGAGCAACAACTTGTCGATTGTGATCATGAGTGTGATCCAGAGCAACCGGGTTCTTGTGATGCCGGGTGCAATGGTGGTCTGATGAATAGTGCTTTTGAGTACATTTTAAAATCCGGTGGGGTGATGCGCGAAGAAGACTATCCTTATTCTGGTACTGATCGTGGAGCATGCAAGTTTGACAAGAAAAAAATTGCAGCATCAGTTGCAAATTTCAGCGTTGTTTCACTTGATGAAGACCAGATTGCCGCTAATCTTGTCAAGAACGGTCCTCTTGCTATTGCCTTAAATGCAGTATATATGCAAACATACATTGGAGGAGTATCATGCCCATACATATGCTCAAAGAGACTAGATCATGGAGTGTTACTGGTGGGATATGGATCTGGAGCCTATTCGCCTATTAGGATGAAGGAGAAGCCATATTGGATAATTAAAAACTCATGGGGTGAGACTTGGGGAGAAAATGGATACTACAAAATATGCAGGGGACGAAATATATGCGGAGTGGACTCCATGGTTTCTACTGTGGCTGCCGTTCATATTACTACTCAGTAG
Protein sequence

>Msa0647030

MDHRTLLLFVVLFIFSVSAFSTPDDGEDSIIRQVVDDEGVRLGAEHHFNLFKHKFGKVYSSKDEHDYRFKIFKSNLNRAKKHQLMDPSAVHGVTKFSDLTPREFRQSVLGLRGVGLPKDANAAPILPTDNLPKDFDWREKGAVTAVKNQGSCGSCWSFSTTGALEGAHFLSTGKLVSLSEQQLVDCDHECDPEQPGSCDAGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGACKFDKKKIAASVANFSVVSLDEDQIAANLVKNGPLAIALNAVYMQTYIGGVSCPYICSKRLDHGVLLVGYGSGAYSPIRMKEKPYWIIKNSWGETWGENGYYKICRGRNICGVDSMVSTVAAVHITTQ*