Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551880 | XP_013456470.1 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 9.16e-102 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551880 | sp|Q9ZNT3|ADF5_ARATH | 86.014 | 143 | 20 | 0 | 1 | 143 | 1 | 143 | 1.22e-88 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551880 | A0A072UM89 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 4.37e-102 | 297 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0551880 | Msa0687030 | 0.849029 | 4.202830e-60 | -8.615850e-47 |
| Msa0551880 | Msa1305700 | 0.858516 | 7.806456e-63 | -8.615850e-47 |
| Msa0551880 | Msa1342890 | 0.912473 | 1.871606e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551880 | MtrunA17_Chr4g0037251 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 8.42e-106 | 297 |
| Msa0551880 | MtrunA17_Chr7g0261251 | 68.889 | 135 | 42 | 0 | 8 | 142 | 11 | 145 | 5.30e-71 | 209 |
| Msa0551880 | MtrunA17_Chr1g0187771 | 62.329 | 146 | 49 | 1 | 3 | 142 | 1 | 146 | 6.28e-62 | 187 |
| Msa0551880 | MtrunA17_Chr1g0182501 | 61.194 | 134 | 52 | 0 | 8 | 141 | 4 | 137 | 1.74e-60 | 183 |
| Msa0551880 | MtrunA17_Chr5g0397641 | 60.000 | 135 | 52 | 1 | 8 | 142 | 4 | 136 | 9.53e-60 | 181 |
| Msa0551880 | MtrunA17_Chr1g0203211 | 59.259 | 135 | 53 | 1 | 8 | 142 | 28 | 160 | 1.42e-57 | 176 |
| Msa0551880 | MtrunA17_Chr8g0380291 | 57.778 | 135 | 57 | 0 | 8 | 142 | 4 | 138 | 1.93e-57 | 175 |
| Msa0551880 | MtrunA17_Chr2g0291571 | 55.556 | 135 | 60 | 0 | 8 | 142 | 4 | 138 | 1.02e-56 | 173 |
| Msa0551880 | MtrunA17_Chr8g0386651 | 57.037 | 135 | 56 | 1 | 8 | 142 | 4 | 136 | 7.90e-56 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0551880 | AT2G16700.1 | 86.014 | 143 | 20 | 0 | 1 | 143 | 1 | 143 | 1.24e-89 | 257 |
| Msa0551880 | AT4G34970.1 | 80.851 | 141 | 27 | 0 | 3 | 143 | 1 | 141 | 2.40e-86 | 248 |
| Msa0551880 | AT2G16700.4 | 84.848 | 132 | 20 | 0 | 12 | 143 | 1 | 132 | 5.02e-81 | 235 |
| Msa0551880 | AT2G16700.2 | 84.848 | 132 | 20 | 0 | 12 | 143 | 1 | 132 | 5.02e-81 | 235 |
| Msa0551880 | AT2G31200.1 | 62.222 | 135 | 51 | 0 | 8 | 142 | 11 | 145 | 2.71e-62 | 188 |
| Msa0551880 | AT4G00680.1 | 59.701 | 134 | 54 | 0 | 8 | 141 | 4 | 137 | 2.28e-61 | 185 |
| Msa0551880 | AT4G00680.2 | 59.701 | 134 | 54 | 0 | 8 | 141 | 14 | 147 | 4.32e-61 | 185 |
| Msa0551880 | AT1G01750.1 | 59.701 | 134 | 54 | 0 | 8 | 141 | 4 | 137 | 2.02e-60 | 183 |
| Msa0551880 | AT1G01750.2 | 59.701 | 134 | 54 | 0 | 8 | 141 | 9 | 142 | 2.61e-60 | 183 |
| Msa0551880 | AT5G59890.1 | 59.701 | 134 | 54 | 0 | 8 | 141 | 4 | 137 | 1.51e-59 | 181 |
| Msa0551880 | AT3G46010.2 | 58.519 | 135 | 56 | 0 | 8 | 142 | 15 | 149 | 2.59e-59 | 181 |
| Msa0551880 | AT3G46010.1 | 58.519 | 135 | 56 | 0 | 8 | 142 | 4 | 138 | 3.30e-59 | 180 |
| Msa0551880 | AT4G25590.1 | 60.741 | 135 | 51 | 1 | 8 | 142 | 4 | 136 | 4.54e-59 | 179 |
| Msa0551880 | AT5G59880.1 | 57.037 | 135 | 58 | 0 | 8 | 142 | 4 | 138 | 3.47e-58 | 177 |
| Msa0551880 | AT3G46000.1 | 60.448 | 134 | 51 | 1 | 8 | 141 | 4 | 135 | 1.19e-57 | 176 |
| Msa0551880 | AT5G59890.3 | 60.000 | 130 | 52 | 0 | 12 | 141 | 1 | 130 | 1.50e-57 | 176 |
| Msa0551880 | AT5G59890.2 | 60.000 | 130 | 52 | 0 | 12 | 141 | 1 | 130 | 1.50e-57 | 176 |
| Msa0551880 | AT3G46000.2 | 60.448 | 134 | 51 | 1 | 8 | 141 | 23 | 154 | 1.56e-57 | 176 |
| Msa0551880 | AT4G25590.2 | 61.069 | 131 | 49 | 1 | 12 | 142 | 1 | 129 | 4.35e-57 | 174 |
| Msa0551880 | AT2G16700.3 | 77.982 | 109 | 24 | 0 | 1 | 109 | 1 | 109 | 5.09e-56 | 171 |
| Msa0551880 | AT5G52360.1 | 57.778 | 135 | 55 | 1 | 8 | 142 | 4 | 136 | 8.29e-56 | 171 |
| Msa0551880 | AT3G46000.3 | 60.769 | 130 | 49 | 1 | 12 | 141 | 1 | 128 | 1.21e-55 | 171 |
| Msa0551880 | AT5G59880.2 | 52.593 | 135 | 49 | 1 | 8 | 142 | 4 | 123 | 2.03e-48 | 152 |
| Msa0551880 | AT3G45990.1 | 40.000 | 135 | 72 | 3 | 12 | 141 | 1 | 131 | 1.83e-31 | 109 |
Find 57 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAATTAAATGTTGGATTT+TGG | 0.145397 | 4_1:+48133036 | Msa0551880:three_prime_UTR |
| TTACTCTTTAATTATGAAAA+TGG | 0.192136 | 4_1:+48133178 | Msa0551880:three_prime_UTR |
| AAAATCCAACATTTAATTAA+AGG | 0.207337 | 4_1:-48133034 | None:intergenic |
| AATTAAGAGGGGCATCTATT+TGG | 0.279597 | 4_1:-48132878 | None:intergenic |
| AATGGCGATGGCTTTCAAAA+TGG | 0.335809 | 4_1:+48131909 | Msa0551880:exon |
| GTTGACAAGGTTGGTGGTCC+TGG | 0.380021 | 4_1:+48132205 | Msa0551880:CDS |
| TCTCTTATTCTTGATGCTGT+TGG | 0.381519 | 4_1:-48132739 | None:intergenic |
| GGATGGGTTAAGAAGAGCTT+TGG | 0.389969 | 4_1:+48132786 | Msa0551880:CDS |
| TATATAATAAAGAGTAAGAT+TGG | 0.392525 | 4_1:-48132927 | None:intergenic |
| GTCGGGTGTATGATAAGTTA+AGG | 0.403852 | 4_1:+48133135 | Msa0551880:three_prime_UTR |
| AAGTTATTGTATATGATTGT+CGG | 0.404555 | 4_1:+48133117 | Msa0551880:three_prime_UTR |
| AGAACATGTCATAGAGTCAT+TGG | 0.413308 | 4_1:-48132984 | None:intergenic |
| AGTTAAGGGCAACAAACCTT+TGG | 0.419776 | 4_1:+48133150 | Msa0551880:three_prime_UTR |
| AATGGTTGACACAAATTTGA+AGG | 0.424205 | 4_1:-48131817 | None:intergenic |
| GAATCTGAACAGGCTACTAC+TGG | 0.427593 | 4_1:+48132076 | Msa0551880:intron |
| AGTTATTGTATATGATTGTC+GGG | 0.430533 | 4_1:+48133118 | Msa0551880:three_prime_UTR |
| GACACAAATTTGAAGGGAAT+GGG | 0.436624 | 4_1:-48131810 | None:intergenic |
| TAGCTTGGCACATAATTAAG+AGG | 0.439808 | 4_1:-48132891 | None:intergenic |
| TCTCAGTTGGATCGGTTGCT+TGG | 0.449998 | 4_1:-48132828 | None:intergenic |
| TGACACAAATTTGAAGGGAA+TGG | 0.472077 | 4_1:-48131811 | None:intergenic |
| GCATATCTACAATCATCATT+AGG | 0.474554 | 4_1:-48132259 | None:intergenic |
| GGTAGAATAATTGATTAGCT+TGG | 0.477263 | 4_1:-48132906 | None:intergenic |
| GTAGTCCTTTAATTAAATGT+TGG | 0.512500 | 4_1:+48133029 | Msa0551880:three_prime_UTR |
| ATTTGAAGGGAATGGGACTC+AGG | 0.515122 | 4_1:-48131803 | None:intergenic |
| TCGGGTGTATGATAAGTTAA+GGG | 0.515851 | 4_1:+48133136 | Msa0551880:three_prime_UTR |
| GGCACCATTGTGATGTAAGT+GGG | 0.522332 | 4_1:+48133057 | Msa0551880:three_prime_UTR |
| AACAGGCTACTACTGGGATG+TGG | 0.527418 | 4_1:+48132083 | Msa0551880:intron |
| AGCAACCGATCCAACTGAGA+TGG | 0.533493 | 4_1:+48132831 | Msa0551880:CDS |
| ACTCTTTCATGGAGATGAAG+TGG | 0.533958 | 4_1:+48132125 | Msa0551880:CDS |
| ACATCGAATCCCATCTCAGT+TGG | 0.534338 | 4_1:-48132841 | None:intergenic |
| CATGGAGATGAAGTGGAAGA+AGG | 0.543453 | 4_1:+48132132 | Msa0551880:CDS |
| ATGGTTGACACAAATTTGAA+GGG | 0.545737 | 4_1:-48131816 | None:intergenic |
| GCAACCGATCCAACTGAGAT+GGG | 0.549755 | 4_1:+48132832 | Msa0551880:CDS |
| TGGCACCATTGTGATGTAAG+TGG | 0.550458 | 4_1:+48133056 | Msa0551880:three_prime_UTR |
| GCAAGATCTTCTTCATTGCA+TGG | 0.552818 | 4_1:+48132326 | Msa0551880:CDS |
| TGAAGAAGATCTTGCTCTTG+CGG | 0.553047 | 4_1:-48132318 | None:intergenic |
| TTAAAGAGTAATACAACCAA+AGG | 0.560788 | 4_1:-48133166 | None:intergenic |
| GATACTATACGCAACATCAA+AGG | 0.562150 | 4_1:+48132765 | Msa0551880:CDS |
| AGCTTGGCACATAATTAAGA+GGG | 0.562790 | 4_1:-48132890 | None:intergenic |
| GGGTTAAGAAGAGCTTTGGA+TGG | 0.582337 | 4_1:+48132790 | Msa0551880:CDS |
| GTGACCGTTGACAAGGTTGG+TGG | 0.590709 | 4_1:+48132199 | Msa0551880:CDS |
| GATGAGAAGAAGAACCAAGT+TGG | 0.592365 | 4_1:-48131879 | None:intergenic |
| GAATCCCATCTCAGTTGGAT+CGG | 0.598606 | 4_1:-48132836 | None:intergenic |
| TGAAGTGGAAGAAGGTGCAT+AGG | 0.607407 | 4_1:+48132140 | Msa0551880:CDS |
| CTATACGCAACATCAAAGGA+TGG | 0.610779 | 4_1:+48132769 | Msa0551880:CDS |
| AAGGCTTGTGACCGTTGACA+AGG | 0.611864 | 4_1:+48132192 | Msa0551880:CDS |
| ACAGGCTACTACTGGGATGT+GGG | 0.613046 | 4_1:+48132084 | Msa0551880:intron |
| TTCTTCTCATCAGATAACAA+TGG | 0.614668 | 4_1:+48131891 | Msa0551880:exon |
| TGGTTGAGACTTGAGAGCAA+TGG | 0.618268 | 4_1:+48133198 | Msa0551880:three_prime_UTR |
| TCATCAGATAACAATGGCGA+TGG | 0.623350 | 4_1:+48131897 | Msa0551880:exon |
| TATACGCAACATCAAAGGAT+GGG | 0.626471 | 4_1:+48132770 | Msa0551880:CDS |
| AATCTGAACAGGCTACTACT+GGG | 0.632062 | 4_1:+48132077 | Msa0551880:intron |
| AGGACCACCAACCTTGTCAA+CGG | 0.633960 | 4_1:-48132203 | None:intergenic |
| CTTGTGACCGTTGACAAGGT+TGG | 0.653631 | 4_1:+48132196 | Msa0551880:CDS |
| GCTTGGCACATAATTAAGAG+GGG | 0.677123 | 4_1:-48132889 | None:intergenic |
| GCACCATTGTGATGTAAGTG+GGG | 0.688234 | 4_1:+48133058 | Msa0551880:three_prime_UTR |
| ATACCCCACTTACATCACAA+TGG | 0.734161 | 4_1:-48133061 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGTCAATTTAGTAT+AGG | - | chr4_1:48132532-48132551 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTTACTTTTACT+TGG | + | chr4_1:48132543-48132562 | Msa0551880:intron | 15.0% |
| !! | TATATAATAAAGAGTAAGAT+TGG | - | chr4_1:48132930-48132949 | None:intergenic | 15.0% |
| !! | AAAATCCAACATTTAATTAA+AGG | - | chr4_1:48133037-48133056 | None:intergenic | 15.0% |
| !!! | TTTAATTAAATGTTGGATTT+TGG | + | chr4_1:48133036-48133055 | Msa0551880:three_prime_UTR | 15.0% |
| !! | TTACTCTTTAATTATGAAAA+TGG | + | chr4_1:48133178-48133197 | Msa0551880:three_prime_UTR | 15.0% |
| !! | TTTGTTTATACACATGTTTA+TGG | + | chr4_1:48132023-48132042 | Msa0551880:intron | 20.0% |
| !! | TTTAATCCAACAATTGAAAT+TGG | + | chr4_1:48132420-48132439 | Msa0551880:intron | 20.0% |
| !!! | TAATTTTGGGTAAAATTTTC+AGG | + | chr4_1:48132713-48132732 | Msa0551880:intron | 20.0% |
| !!! | CTTTTTCCTTTTTCTTTTTA+TGG | + | chr4_1:48133007-48133026 | Msa0551880:three_prime_UTR | 20.0% |
| !! | AAGTTATTGTATATGATTGT+CGG | + | chr4_1:48133117-48133136 | Msa0551880:three_prime_UTR | 20.0% |
| ! | TATGAGTGAGATGATTTAAA+AGG | - | chr4_1:48131945-48131964 | None:intergenic | 25.0% |
| ! | CATATAATATGAATCTGAAC+AGG | + | chr4_1:48132066-48132085 | Msa0551880:intron | 25.0% |
| ! | GATTAATCTAACAATTGAGA+TGG | - | chr4_1:48132371-48132390 | None:intergenic | 25.0% |
| ! | TCAATTGTTGGATTAAACAA+AGG | - | chr4_1:48132417-48132436 | None:intergenic | 25.0% |
| ! | TCACATCATATGGTATTATT+GGG | - | chr4_1:48132625-48132644 | None:intergenic | 25.0% |
| ! | ATCACATCATATGGTATTAT+TGG | - | chr4_1:48132626-48132645 | None:intergenic | 25.0% |
| ! | GTAGTCCTTTAATTAAATGT+TGG | + | chr4_1:48133029-48133048 | Msa0551880:three_prime_UTR | 25.0% |
| ! | AGTTATTGTATATGATTGTC+GGG | + | chr4_1:48133118-48133137 | Msa0551880:three_prime_UTR | 25.0% |
| ! | TTAAAGAGTAATACAACCAA+AGG | - | chr4_1:48133169-48133188 | None:intergenic | 25.0% |
| ATGGTTGACACAAATTTGAA+GGG | - | chr4_1:48131819-48131838 | None:intergenic | 30.0% | |
| AATGGTTGACACAAATTTGA+AGG | - | chr4_1:48131820-48131839 | None:intergenic | 30.0% | |
| GAAAAAAAGTAAGACCAACT+TGG | + | chr4_1:48131865-48131884 | Msa0551880:five_prime_UTR | 30.0% | |
| TTCTTCTCATCAGATAACAA+TGG | + | chr4_1:48131891-48131910 | Msa0551880:exon | 30.0% | |
| TCAAGATCGATGAAAAAACA+AGG | + | chr4_1:48132173-48132192 | Msa0551880:CDS | 30.0% | |
| GCATATCTACAATCATCATT+AGG | - | chr4_1:48132262-48132281 | None:intergenic | 30.0% | |
| CATTGAGCAAACATTGTTAT+TGG | - | chr4_1:48132393-48132412 | None:intergenic | 30.0% | |
| TAGAGTCCAATTTCAATTGT+TGG | - | chr4_1:48132429-48132448 | None:intergenic | 30.0% | |
| TAAATTGTACTACTAGTACC+TGG | - | chr4_1:48132575-48132594 | None:intergenic | 30.0% | |
| TATATGAGTCTAATACAAGC+TGG | + | chr4_1:48132599-48132618 | Msa0551880:intron | 30.0% | |
| TGTACATTCATCACATCATA+TGG | - | chr4_1:48132635-48132654 | None:intergenic | 30.0% | |
| ! | TGAATGTGAGGGATAATTTT+GGG | + | chr4_1:48132700-48132719 | Msa0551880:intron | 30.0% |
| ! | GGTAGAATAATTGATTAGCT+TGG | - | chr4_1:48132909-48132928 | None:intergenic | 30.0% |
| GGACTACCATAAAAAGAAAA+AGG | - | chr4_1:48133016-48133035 | None:intergenic | 30.0% | |
| !!! | GCTCAAACTTTTTTCATATG+TGG | + | chr4_1:48133225-48133244 | Msa0551880:three_prime_UTR | 30.0% |
| GACACAAATTTGAAGGGAAT+GGG | - | chr4_1:48131813-48131832 | None:intergenic | 35.0% | |
| TGACACAAATTTGAAGGGAA+TGG | - | chr4_1:48131814-48131833 | None:intergenic | 35.0% | |
| TGAGTGCAAAAACTCTTTCA+TGG | + | chr4_1:48132114-48132133 | Msa0551880:CDS | 35.0% | |
| ! | AGATCATCATAGTTTTCTCC+AGG | - | chr4_1:48132226-48132245 | None:intergenic | 35.0% |
| ACACACAATTAGATCGTCTA+CGG | - | chr4_1:48132465-48132484 | None:intergenic | 35.0% | |
| ACGATCTAATTGTGTGTGTT+TGG | + | chr4_1:48132468-48132487 | Msa0551880:intron | 35.0% | |
| ! | ACTTTTACTTGGTAAGTACC+AGG | + | chr4_1:48132554-48132573 | Msa0551880:intron | 35.0% |
| ! | TGATGATGAATGTGAATGTG+AGG | + | chr4_1:48132688-48132707 | Msa0551880:intron | 35.0% |
| GATGATGAATGTGAATGTGA+GGG | + | chr4_1:48132689-48132708 | Msa0551880:intron | 35.0% | |
| ! | GTGAATGTGAGGGATAATTT+TGG | + | chr4_1:48132699-48132718 | Msa0551880:intron | 35.0% |
| TCTCTTATTCTTGATGCTGT+TGG | - | chr4_1:48132742-48132761 | None:intergenic | 35.0% | |
| GATACTATACGCAACATCAA+AGG | + | chr4_1:48132765-48132784 | Msa0551880:CDS | 35.0% | |
| TATACGCAACATCAAAGGAT+GGG | + | chr4_1:48132770-48132789 | Msa0551880:CDS | 35.0% | |
| !! | AATTAAGAGGGGCATCTATT+TGG | - | chr4_1:48132881-48132900 | None:intergenic | 35.0% |
| AGCTTGGCACATAATTAAGA+GGG | - | chr4_1:48132893-48132912 | None:intergenic | 35.0% | |
| TAGCTTGGCACATAATTAAG+AGG | - | chr4_1:48132894-48132913 | None:intergenic | 35.0% | |
| AGAACATGTCATAGAGTCAT+TGG | - | chr4_1:48132987-48133006 | None:intergenic | 35.0% | |
| TCGGGTGTATGATAAGTTAA+GGG | + | chr4_1:48133136-48133155 | Msa0551880:three_prime_UTR | 35.0% | |
| GATGAGAAGAAGAACCAAGT+TGG | - | chr4_1:48131882-48131901 | None:intergenic | 40.0% | |
| TCATCAGATAACAATGGCGA+TGG | + | chr4_1:48131897-48131916 | Msa0551880:exon | 40.0% | |
| AATGGCGATGGCTTTCAAAA+TGG | + | chr4_1:48131909-48131928 | Msa0551880:exon | 40.0% | |
| AATCTGAACAGGCTACTACT+GGG | + | chr4_1:48132077-48132096 | Msa0551880:intron | 40.0% | |
| ACTCTTTCATGGAGATGAAG+TGG | + | chr4_1:48132125-48132144 | Msa0551880:CDS | 40.0% | |
| TGAAGAAGATCTTGCTCTTG+CGG | - | chr4_1:48132321-48132340 | None:intergenic | 40.0% | |
| GCAAGATCTTCTTCATTGCA+TGG | + | chr4_1:48132326-48132345 | Msa0551880:CDS | 40.0% | |
| CTATACGCAACATCAAAGGA+TGG | + | chr4_1:48132769-48132788 | Msa0551880:CDS | 40.0% | |
| GCTTGGCACATAATTAAGAG+GGG | - | chr4_1:48132892-48132911 | None:intergenic | 40.0% | |
| ATACCCCACTTACATCACAA+TGG | - | chr4_1:48133064-48133083 | None:intergenic | 40.0% | |
| GTCGGGTGTATGATAAGTTA+AGG | + | chr4_1:48133135-48133154 | Msa0551880:three_prime_UTR | 40.0% | |
| AGTTAAGGGCAACAAACCTT+TGG | + | chr4_1:48133150-48133169 | Msa0551880:three_prime_UTR | 40.0% | |
| GAATCTGAACAGGCTACTAC+TGG | + | chr4_1:48132076-48132095 | Msa0551880:intron | 45.0% | |
| CATGGAGATGAAGTGGAAGA+AGG | + | chr4_1:48132132-48132151 | Msa0551880:CDS | 45.0% | |
| ! | TGAAGTGGAAGAAGGTGCAT+AGG | + | chr4_1:48132140-48132159 | Msa0551880:CDS | 45.0% |
| AATTGGACTCTACAAAGCCG+TGG | + | chr4_1:48132437-48132456 | Msa0551880:intron | 45.0% | |
| !! | GGATGGGTTAAGAAGAGCTT+TGG | + | chr4_1:48132786-48132805 | Msa0551880:CDS | 45.0% |
| !! | GGGTTAAGAAGAGCTTTGGA+TGG | + | chr4_1:48132790-48132809 | Msa0551880:CDS | 45.0% |
| GAATCCCATCTCAGTTGGAT+CGG | - | chr4_1:48132839-48132858 | None:intergenic | 45.0% | |
| ACATCGAATCCCATCTCAGT+TGG | - | chr4_1:48132844-48132863 | None:intergenic | 45.0% | |
| TGGCACCATTGTGATGTAAG+TGG | + | chr4_1:48133056-48133075 | Msa0551880:three_prime_UTR | 45.0% | |
| GGCACCATTGTGATGTAAGT+GGG | + | chr4_1:48133057-48133076 | Msa0551880:three_prime_UTR | 45.0% | |
| GCACCATTGTGATGTAAGTG+GGG | + | chr4_1:48133058-48133077 | Msa0551880:three_prime_UTR | 45.0% | |
| TGGTTGAGACTTGAGAGCAA+TGG | + | chr4_1:48133198-48133217 | Msa0551880:three_prime_UTR | 45.0% | |
| !!! | AATTTATGATATTTTTATAA+TGG | - | chr4_1:48131838-48131857 | None:intergenic | 5.0% |
| AACAGGCTACTACTGGGATG+TGG | + | chr4_1:48132083-48132102 | Msa0551880:intron | 50.0% | |
| ACAGGCTACTACTGGGATGT+GGG | + | chr4_1:48132084-48132103 | Msa0551880:intron | 50.0% | |
| AAGGCTTGTGACCGTTGACA+AGG | + | chr4_1:48132192-48132211 | Msa0551880:CDS | 50.0% | |
| CTTGTGACCGTTGACAAGGT+TGG | + | chr4_1:48132196-48132215 | Msa0551880:CDS | 50.0% | |
| AGGACCACCAACCTTGTCAA+CGG | - | chr4_1:48132206-48132225 | None:intergenic | 50.0% | |
| TCTCAGTTGGATCGGTTGCT+TGG | - | chr4_1:48132831-48132850 | None:intergenic | 50.0% | |
| AGCAACCGATCCAACTGAGA+TGG | + | chr4_1:48132831-48132850 | Msa0551880:CDS | 50.0% | |
| GCAACCGATCCAACTGAGAT+GGG | + | chr4_1:48132832-48132851 | Msa0551880:CDS | 50.0% | |
| GTGACCGTTGACAAGGTTGG+TGG | + | chr4_1:48132199-48132218 | Msa0551880:CDS | 55.0% | |
| !! | GTTGACAAGGTTGGTGGTCC+TGG | + | chr4_1:48132205-48132224 | Msa0551880:CDS | 55.0% |
| TTAGATCGTCTACGGCGCCA+CGG | - | chr4_1:48132457-48132476 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 48131806 | 48133265 | 48131806 | ID=Msa0551880;Name=Msa0551880 |
| chr4_1 | mRNA | 48131806 | 48133265 | 48131806 | ID=Msa0551880-mRNA-1;Parent=Msa0551880;Name=Msa0551880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=104|1|1|1|1|1|3|380|143 |
| chr4_1 | exon | 48131806 | 48131930 | 48131806 | ID=Msa0551880-mRNA-1:exon:13119;Parent=Msa0551880-mRNA-1 |
| chr4_1 | exon | 48132088 | 48132347 | 48132088 | ID=Msa0551880-mRNA-1:exon:13120;Parent=Msa0551880-mRNA-1 |
| chr4_1 | exon | 48132735 | 48133265 | 48132735 | ID=Msa0551880-mRNA-1:exon:13121;Parent=Msa0551880-mRNA-1 |
| chr4_1 | five_prime_UTR | 48131806 | 48131909 | 48131806 | ID=Msa0551880-mRNA-1:five_prime_utr;Parent=Msa0551880-mRNA-1 |
| chr4_1 | CDS | 48131910 | 48131930 | 48131910 | ID=Msa0551880-mRNA-1:cds;Parent=Msa0551880-mRNA-1 |
| chr4_1 | CDS | 48132088 | 48132347 | 48132088 | ID=Msa0551880-mRNA-1:cds;Parent=Msa0551880-mRNA-1 |
| chr4_1 | CDS | 48132735 | 48132885 | 48132735 | ID=Msa0551880-mRNA-1:cds;Parent=Msa0551880-mRNA-1 |
| chr4_1 | three_prime_UTR | 48132886 | 48133265 | 48132886 | ID=Msa0551880-mRNA-1:three_prime_utr;Parent=Msa0551880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
