AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342890 MtrunA17_Chr4g0037251 100.000 143 0 0 1 143 1 143 8.42e-106 297
Msa1342890 MtrunA17_Chr7g0261251 68.889 135 42 0 8 142 11 145 5.30e-71 209
Msa1342890 MtrunA17_Chr1g0187771 62.329 146 49 1 3 142 1 146 6.28e-62 187
Msa1342890 MtrunA17_Chr1g0182501 61.194 134 52 0 8 141 4 137 1.74e-60 183
Msa1342890 MtrunA17_Chr5g0397641 60.000 135 52 1 8 142 4 136 9.53e-60 181
Msa1342890 MtrunA17_Chr1g0203211 59.259 135 53 1 8 142 28 160 1.42e-57 176
Msa1342890 MtrunA17_Chr8g0380291 57.778 135 57 0 8 142 4 138 1.93e-57 175
Msa1342890 MtrunA17_Chr2g0291571 55.556 135 60 0 8 142 4 138 1.02e-56 173
Msa1342890 MtrunA17_Chr8g0386651 57.037 135 56 1 8 142 4 136 7.90e-56 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342890 AT2G16700.1 86.014 143 20 0 1 143 1 143 1.24e-89 257
Msa1342890 AT4G34970.1 80.851 141 27 0 3 143 1 141 2.40e-86 248
Msa1342890 AT2G16700.4 84.848 132 20 0 12 143 1 132 5.02e-81 235
Msa1342890 AT2G16700.2 84.848 132 20 0 12 143 1 132 5.02e-81 235
Msa1342890 AT2G31200.1 62.222 135 51 0 8 142 11 145 2.71e-62 188
Msa1342890 AT4G00680.1 59.701 134 54 0 8 141 4 137 2.28e-61 185
Msa1342890 AT4G00680.2 59.701 134 54 0 8 141 14 147 4.32e-61 185
Msa1342890 AT1G01750.1 59.701 134 54 0 8 141 4 137 2.02e-60 183
Msa1342890 AT1G01750.2 59.701 134 54 0 8 141 9 142 2.61e-60 183
Msa1342890 AT5G59890.1 59.701 134 54 0 8 141 4 137 1.51e-59 181
Msa1342890 AT3G46010.2 58.519 135 56 0 8 142 15 149 2.59e-59 181
Msa1342890 AT3G46010.1 58.519 135 56 0 8 142 4 138 3.30e-59 180
Msa1342890 AT4G25590.1 60.741 135 51 1 8 142 4 136 4.54e-59 179
Msa1342890 AT5G59880.1 57.037 135 58 0 8 142 4 138 3.47e-58 177
Msa1342890 AT3G46000.1 60.448 134 51 1 8 141 4 135 1.19e-57 176
Msa1342890 AT5G59890.3 60.000 130 52 0 12 141 1 130 1.50e-57 176
Msa1342890 AT5G59890.2 60.000 130 52 0 12 141 1 130 1.50e-57 176
Msa1342890 AT3G46000.2 60.448 134 51 1 8 141 23 154 1.56e-57 176
Msa1342890 AT4G25590.2 61.069 131 49 1 12 142 1 129 4.35e-57 174
Msa1342890 AT2G16700.3 77.982 109 24 0 1 109 1 109 5.09e-56 171
Msa1342890 AT5G52360.1 57.778 135 55 1 8 142 4 136 8.29e-56 171
Msa1342890 AT3G46000.3 60.769 130 49 1 12 141 1 128 1.21e-55 171
Msa1342890 AT5G59880.2 52.593 135 49 1 8 142 4 123 2.03e-48 152
Msa1342890 AT3G45990.1 40.000 135 72 3 12 141 1 131 1.83e-31 109

Find 58 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATTAAATGTTGGATTT+TGG 0.145397 tig0006056:+118249 Msa1342890:three_prime_UTR
AAAATCCAACATTTAATTAA+AGG 0.207337 tig0006056:-118247 None:intergenic
GTCGGGTGTATGATAAATTA+AGG 0.212675 tig0006056:+118348 Msa1342890:three_prime_UTR
TTACTCTTTAATTATGAAAA+TGG 0.234511 tig0006056:+118394 Msa1342890:three_prime_UTR
AATTAAGAGGGGCATCTATT+TGG 0.279597 tig0006056:-118084 None:intergenic
AATGGCGATGGCTTTCAAAA+TGG 0.335809 tig0006056:+117103 Msa1342890:exon
GTTGACAAGGTTGGTGGTCC+TGG 0.380021 tig0006056:+117417 Msa1342890:CDS
TCTCTTATTCTTGATGCTGT+TGG 0.381519 tig0006056:-117945 None:intergenic
GGATGGGTTAAGAAGAGCTT+TGG 0.389969 tig0006056:+117992 Msa1342890:CDS
TATATAATAAAGAGTAAGAT+TGG 0.392525 tig0006056:-118133 None:intergenic
ACTCTTTCATGGAGATGAAA+TGG 0.399104 tig0006056:+117337 Msa1342890:CDS
AAGTTATTGTATATGATTGT+CGG 0.404555 tig0006056:+118330 Msa1342890:three_prime_UTR
AGAACATGTCATAGAGTCAT+TGG 0.413308 tig0006056:-118190 None:intergenic
AATTAAGGGCAACAAACCTT+TGG 0.416125 tig0006056:+118363 Msa1342890:three_prime_UTR
AATGGTTGACACAAATTTGA+AGG 0.424205 tig0006056:-117011 None:intergenic
GAATCTGAACAGGCTACTAC+TGG 0.427593 tig0006056:+117288 Msa1342890:intron
AGTTATTGTATATGATTGTC+GGG 0.430533 tig0006056:+118331 Msa1342890:three_prime_UTR
TGAGTGCAAGAACTCTTTCA+TGG 0.435498 tig0006056:+117326 Msa1342890:CDS
GACACAAATTTGAAGGGAAT+GGG 0.436624 tig0006056:-117004 None:intergenic
TAGCTTGGCACATAATTAAG+AGG 0.439808 tig0006056:-118097 None:intergenic
TCTCAGTTGGATCGGTTGCT+TGG 0.449998 tig0006056:-118034 None:intergenic
TGACACAAATTTGAAGGGAA+TGG 0.472077 tig0006056:-117005 None:intergenic
GCATATCTACAATCATCATT+AGG 0.474554 tig0006056:-117471 None:intergenic
GGTAGAATAATTGATTAGCT+TGG 0.477263 tig0006056:-118112 None:intergenic
TCGGGTGTATGATAAATTAA+GGG 0.506248 tig0006056:+118349 Msa1342890:three_prime_UTR
GTAGTCCTTTAATTAAATGT+TGG 0.512500 tig0006056:+118242 Msa1342890:three_prime_UTR
ATTTGAAGGGAATGGGACTC+AGG 0.515122 tig0006056:-116997 None:intergenic
GGCACCATTGTGATGTAAGT+GGG 0.522332 tig0006056:+118270 Msa1342890:three_prime_UTR
AACAGGCTACTACTGGGATG+TGG 0.527418 tig0006056:+117295 Msa1342890:intron
AGCAACCGATCCAACTGAGA+TGG 0.533493 tig0006056:+118037 Msa1342890:CDS
ACATCGAATCCCATCTCAGT+TGG 0.534338 tig0006056:-118047 None:intergenic
CATGGAGATGAAATGGAAGA+AGG 0.536633 tig0006056:+117344 Msa1342890:CDS
ATGGTTGACACAAATTTGAA+GGG 0.545737 tig0006056:-117010 None:intergenic
GCAACCGATCCAACTGAGAT+GGG 0.549755 tig0006056:+118038 Msa1342890:CDS
TGGCACCATTGTGATGTAAG+TGG 0.550458 tig0006056:+118269 Msa1342890:three_prime_UTR
GCAAGATCTTCTTCATTGCA+TGG 0.552818 tig0006056:+117538 Msa1342890:CDS
TGAAGAAGATCTTGCTCTTG+CGG 0.553047 tig0006056:-117530 None:intergenic
GATACTATACGCAACATCAA+AGG 0.562150 tig0006056:+117971 Msa1342890:CDS
AGCTTGGCACATAATTAAGA+GGG 0.562790 tig0006056:-118096 None:intergenic
AAGAGTAATAGTACAACCAA+AGG 0.581653 tig0006056:-118379 None:intergenic
GGGTTAAGAAGAGCTTTGGA+TGG 0.582337 tig0006056:+117996 Msa1342890:CDS
TGAAATGGAAGAAGGTGCAT+AGG 0.587717 tig0006056:+117352 Msa1342890:CDS
GTGACCGTTGACAAGGTTGG+TGG 0.590709 tig0006056:+117411 Msa1342890:CDS
GATGAGAAGAAGAACCAAGT+TGG 0.592365 tig0006056:-117073 None:intergenic
GAATCCCATCTCAGTTGGAT+CGG 0.598606 tig0006056:-118042 None:intergenic
CTATACGCAACATCAAAGGA+TGG 0.610779 tig0006056:+117975 Msa1342890:CDS
AAGGCTTGTGACCGTTGACA+AGG 0.611864 tig0006056:+117404 Msa1342890:CDS
ACAGGCTACTACTGGGATGT+GGG 0.613046 tig0006056:+117296 Msa1342890:intron
TTCTTCTCATCAGATAACAA+TGG 0.614668 tig0006056:+117085 Msa1342890:exon
TGGTTGAGACTTGAGAGCAA+TGG 0.618268 tig0006056:+118414 Msa1342890:three_prime_UTR
TCATCAGATAACAATGGCGA+TGG 0.623350 tig0006056:+117091 Msa1342890:exon
TATACGCAACATCAAAGGAT+GGG 0.626471 tig0006056:+117976 Msa1342890:CDS
AATCTGAACAGGCTACTACT+GGG 0.632062 tig0006056:+117289 Msa1342890:intron
AGGACCACCAACCTTGTCAA+CGG 0.633960 tig0006056:-117415 None:intergenic
CTTGTGACCGTTGACAAGGT+TGG 0.653631 tig0006056:+117408 Msa1342890:CDS
GCTTGGCACATAATTAAGAG+GGG 0.677123 tig0006056:-118095 None:intergenic
GCACCATTGTGATGTAAGTG+GGG 0.688234 tig0006056:+118271 Msa1342890:three_prime_UTR
ATACCCCACTTACATCACAA+TGG 0.734161 tig0006056:-118274 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTTATACACATATTTA+TGG + tig0006056:117235-117254 Msa1342890:intron 15.0%
!! AAAAAAAGTCAATTTAGTAT+AGG - tig0006056:117744-117763 None:intergenic 15.0%
!!! ACTTTTTTTTTACTTTTACT+TGG + tig0006056:117755-117774 Msa1342890:intron 15.0%
!! TATATAATAAAGAGTAAGAT+TGG - tig0006056:118136-118155 None:intergenic 15.0%
!! AAAATCCAACATTTAATTAA+AGG - tig0006056:118250-118269 None:intergenic 15.0%
!!! TTTAATTAAATGTTGGATTT+TGG + tig0006056:118249-118268 Msa1342890:three_prime_UTR 15.0%
!! TTACTCTTTAATTATGAAAA+TGG + tig0006056:118394-118413 Msa1342890:three_prime_UTR 15.0%
!! TTTGTTTATACACATATTTA+TGG + tig0006056:117235-117254 Msa1342890:intron 15.0%
!! AAAAAAAGTCAATTTAGTAT+AGG - tig0006056:117744-117763 None:intergenic 15.0%
!!! ACTTTTTTTTTACTTTTACT+TGG + tig0006056:117755-117774 Msa1342890:intron 15.0%
!! TATATAATAAAGAGTAAGAT+TGG - tig0006056:118136-118155 None:intergenic 15.0%
!! AAAATCCAACATTTAATTAA+AGG - tig0006056:118250-118269 None:intergenic 15.0%
!!! TTTAATTAAATGTTGGATTT+TGG + tig0006056:118249-118268 Msa1342890:three_prime_UTR 15.0%
!! TTACTCTTTAATTATGAAAA+TGG + tig0006056:118394-118413 Msa1342890:three_prime_UTR 15.0%
!! TTTAATCCAACAATTGAAAT+TGG + tig0006056:117632-117651 Msa1342890:intron 20.0%
!!! TAATTTTGGGTAAAATTTTC+AGG + tig0006056:117919-117938 Msa1342890:intron 20.0%
!! CATAAAAAGAAAAAGGAAAA+AGG - tig0006056:118222-118241 None:intergenic 20.0%
!!! CTTTTTCCTTTTTCTTTTTA+TGG + tig0006056:118220-118239 Msa1342890:three_prime_UTR 20.0%
!! AAGTTATTGTATATGATTGT+CGG + tig0006056:118330-118349 Msa1342890:three_prime_UTR 20.0%
!! TTTAATCCAACAATTGAAAT+TGG + tig0006056:117632-117651 Msa1342890:intron 20.0%
!!! TAATTTTGGGTAAAATTTTC+AGG + tig0006056:117919-117938 Msa1342890:intron 20.0%
!! CATAAAAAGAAAAAGGAAAA+AGG - tig0006056:118222-118241 None:intergenic 20.0%
!!! CTTTTTCCTTTTTCTTTTTA+TGG + tig0006056:118220-118239 Msa1342890:three_prime_UTR 20.0%
!! AAGTTATTGTATATGATTGT+CGG + tig0006056:118330-118349 Msa1342890:three_prime_UTR 20.0%
! TATGAGTGAGATGATTTAAA+AGG - tig0006056:117139-117158 None:intergenic 25.0%
! CAAATAATATGAATCTGAAC+AGG + tig0006056:117278-117297 Msa1342890:intron 25.0%
! GATTAATCTAACAATTGAGA+TGG - tig0006056:117583-117602 None:intergenic 25.0%
! TCAATTGTTGGATTAAACAA+AGG - tig0006056:117629-117648 None:intergenic 25.0%
! TAAATTGTACTACTAGTACT+TGG - tig0006056:117787-117806 None:intergenic 25.0%
! TCACATCATATGGTATTATT+GGG - tig0006056:117837-117856 None:intergenic 25.0%
! ATCACATCATATGGTATTAT+TGG - tig0006056:117838-117857 None:intergenic 25.0%
! GTAGTCCTTTAATTAAATGT+TGG + tig0006056:118242-118261 Msa1342890:three_prime_UTR 25.0%
! AGTTATTGTATATGATTGTC+GGG + tig0006056:118331-118350 Msa1342890:three_prime_UTR 25.0%
! TATGAGTGAGATGATTTAAA+AGG - tig0006056:117139-117158 None:intergenic 25.0%
! CAAATAATATGAATCTGAAC+AGG + tig0006056:117278-117297 Msa1342890:intron 25.0%
! GATTAATCTAACAATTGAGA+TGG - tig0006056:117583-117602 None:intergenic 25.0%
! TCAATTGTTGGATTAAACAA+AGG - tig0006056:117629-117648 None:intergenic 25.0%
! TAAATTGTACTACTAGTACT+TGG - tig0006056:117787-117806 None:intergenic 25.0%
! TCACATCATATGGTATTATT+GGG - tig0006056:117837-117856 None:intergenic 25.0%
! ATCACATCATATGGTATTAT+TGG - tig0006056:117838-117857 None:intergenic 25.0%
! GTAGTCCTTTAATTAAATGT+TGG + tig0006056:118242-118261 Msa1342890:three_prime_UTR 25.0%
! AGTTATTGTATATGATTGTC+GGG + tig0006056:118331-118350 Msa1342890:three_prime_UTR 25.0%
ATGGTTGACACAAATTTGAA+GGG - tig0006056:117013-117032 None:intergenic 30.0%
AATGGTTGACACAAATTTGA+AGG - tig0006056:117014-117033 None:intergenic 30.0%
GAAAAAAAGTAAGACCAACT+TGG + tig0006056:117059-117078 Msa1342890:five_prime_UTR 30.0%
TTCTTCTCATCAGATAACAA+TGG + tig0006056:117085-117104 Msa1342890:exon 30.0%
TCAAGATCGATGAAAAAACA+AGG + tig0006056:117385-117404 Msa1342890:CDS 30.0%
GCATATCTACAATCATCATT+AGG - tig0006056:117474-117493 None:intergenic 30.0%
CATTGAGCAAACATTGTTAT+TGG - tig0006056:117605-117624 None:intergenic 30.0%
TTGAGTCCAATTTCAATTGT+TGG - tig0006056:117641-117660 None:intergenic 30.0%
TATATGAGTCTAATACAAGC+TGG + tig0006056:117811-117830 Msa1342890:intron 30.0%
TGTACATTCATCACATCATA+TGG - tig0006056:117847-117866 None:intergenic 30.0%
! TGAATGTGAGGGATAATTTT+GGG + tig0006056:117906-117925 Msa1342890:intron 30.0%
! GGTAGAATAATTGATTAGCT+TGG - tig0006056:118115-118134 None:intergenic 30.0%
GGACTACCATAAAAAGAAAA+AGG - tig0006056:118229-118248 None:intergenic 30.0%
TCGGGTGTATGATAAATTAA+GGG + tig0006056:118349-118368 Msa1342890:three_prime_UTR 30.0%
AAGAGTAATAGTACAACCAA+AGG - tig0006056:118382-118401 None:intergenic 30.0%
!!! GCTCAAACTTTTTTCATATG+TGG + tig0006056:118441-118460 Msa1342890:three_prime_UTR 30.0%
ATGGTTGACACAAATTTGAA+GGG - tig0006056:117013-117032 None:intergenic 30.0%
AATGGTTGACACAAATTTGA+AGG - tig0006056:117014-117033 None:intergenic 30.0%
GAAAAAAAGTAAGACCAACT+TGG + tig0006056:117059-117078 Msa1342890:five_prime_UTR 30.0%
TTCTTCTCATCAGATAACAA+TGG + tig0006056:117085-117104 Msa1342890:exon 30.0%
TCAAGATCGATGAAAAAACA+AGG + tig0006056:117385-117404 Msa1342890:CDS 30.0%
GCATATCTACAATCATCATT+AGG - tig0006056:117474-117493 None:intergenic 30.0%
CATTGAGCAAACATTGTTAT+TGG - tig0006056:117605-117624 None:intergenic 30.0%
TTGAGTCCAATTTCAATTGT+TGG - tig0006056:117641-117660 None:intergenic 30.0%
TATATGAGTCTAATACAAGC+TGG + tig0006056:117811-117830 Msa1342890:intron 30.0%
TGTACATTCATCACATCATA+TGG - tig0006056:117847-117866 None:intergenic 30.0%
! TGAATGTGAGGGATAATTTT+GGG + tig0006056:117906-117925 Msa1342890:intron 30.0%
! GGTAGAATAATTGATTAGCT+TGG - tig0006056:118115-118134 None:intergenic 30.0%
GGACTACCATAAAAAGAAAA+AGG - tig0006056:118229-118248 None:intergenic 30.0%
TCGGGTGTATGATAAATTAA+GGG + tig0006056:118349-118368 Msa1342890:three_prime_UTR 30.0%
AAGAGTAATAGTACAACCAA+AGG - tig0006056:118382-118401 None:intergenic 30.0%
!!! GCTCAAACTTTTTTCATATG+TGG + tig0006056:118441-118460 Msa1342890:three_prime_UTR 30.0%
GACACAAATTTGAAGGGAAT+GGG - tig0006056:117007-117026 None:intergenic 35.0%
TGACACAAATTTGAAGGGAA+TGG - tig0006056:117008-117027 None:intergenic 35.0%
ACTCTTTCATGGAGATGAAA+TGG + tig0006056:117337-117356 Msa1342890:CDS 35.0%
! AGATCATCATAGTTTTCTCC+AGG - tig0006056:117438-117457 None:intergenic 35.0%
ACACACAATTAGATCGTCTA+CGG - tig0006056:117677-117696 None:intergenic 35.0%
ACGATCTAATTGTGTGTGTT+TGG + tig0006056:117680-117699 Msa1342890:intron 35.0%
! TGATGATGAATGTGAATGTG+AGG + tig0006056:117894-117913 Msa1342890:intron 35.0%
GATGATGAATGTGAATGTGA+GGG + tig0006056:117895-117914 Msa1342890:intron 35.0%
! GTGAATGTGAGGGATAATTT+TGG + tig0006056:117905-117924 Msa1342890:intron 35.0%
TCTCTTATTCTTGATGCTGT+TGG - tig0006056:117948-117967 None:intergenic 35.0%
GATACTATACGCAACATCAA+AGG + tig0006056:117971-117990 Msa1342890:CDS 35.0%
TATACGCAACATCAAAGGAT+GGG + tig0006056:117976-117995 Msa1342890:CDS 35.0%
!! AATTAAGAGGGGCATCTATT+TGG - tig0006056:118087-118106 None:intergenic 35.0%
AGCTTGGCACATAATTAAGA+GGG - tig0006056:118099-118118 None:intergenic 35.0%
TAGCTTGGCACATAATTAAG+AGG - tig0006056:118100-118119 None:intergenic 35.0%
AGAACATGTCATAGAGTCAT+TGG - tig0006056:118193-118212 None:intergenic 35.0%
GTCGGGTGTATGATAAATTA+AGG + tig0006056:118348-118367 Msa1342890:three_prime_UTR 35.0%
AATTAAGGGCAACAAACCTT+TGG + tig0006056:118363-118382 Msa1342890:three_prime_UTR 35.0%
GACACAAATTTGAAGGGAAT+GGG - tig0006056:117007-117026 None:intergenic 35.0%
TGACACAAATTTGAAGGGAA+TGG - tig0006056:117008-117027 None:intergenic 35.0%
ACTCTTTCATGGAGATGAAA+TGG + tig0006056:117337-117356 Msa1342890:CDS 35.0%
! AGATCATCATAGTTTTCTCC+AGG - tig0006056:117438-117457 None:intergenic 35.0%
ACACACAATTAGATCGTCTA+CGG - tig0006056:117677-117696 None:intergenic 35.0%
ACGATCTAATTGTGTGTGTT+TGG + tig0006056:117680-117699 Msa1342890:intron 35.0%
! TGATGATGAATGTGAATGTG+AGG + tig0006056:117894-117913 Msa1342890:intron 35.0%
GATGATGAATGTGAATGTGA+GGG + tig0006056:117895-117914 Msa1342890:intron 35.0%
! GTGAATGTGAGGGATAATTT+TGG + tig0006056:117905-117924 Msa1342890:intron 35.0%
TCTCTTATTCTTGATGCTGT+TGG - tig0006056:117948-117967 None:intergenic 35.0%
GATACTATACGCAACATCAA+AGG + tig0006056:117971-117990 Msa1342890:CDS 35.0%
TATACGCAACATCAAAGGAT+GGG + tig0006056:117976-117995 Msa1342890:CDS 35.0%
!! AATTAAGAGGGGCATCTATT+TGG - tig0006056:118087-118106 None:intergenic 35.0%
AGCTTGGCACATAATTAAGA+GGG - tig0006056:118099-118118 None:intergenic 35.0%
TAGCTTGGCACATAATTAAG+AGG - tig0006056:118100-118119 None:intergenic 35.0%
AGAACATGTCATAGAGTCAT+TGG - tig0006056:118193-118212 None:intergenic 35.0%
GTCGGGTGTATGATAAATTA+AGG + tig0006056:118348-118367 Msa1342890:three_prime_UTR 35.0%
AATTAAGGGCAACAAACCTT+TGG + tig0006056:118363-118382 Msa1342890:three_prime_UTR 35.0%
GATGAGAAGAAGAACCAAGT+TGG - tig0006056:117076-117095 None:intergenic 40.0%
TCATCAGATAACAATGGCGA+TGG + tig0006056:117091-117110 Msa1342890:exon 40.0%
AATGGCGATGGCTTTCAAAA+TGG + tig0006056:117103-117122 Msa1342890:exon 40.0%
AATCTGAACAGGCTACTACT+GGG + tig0006056:117289-117308 Msa1342890:intron 40.0%
TGAGTGCAAGAACTCTTTCA+TGG + tig0006056:117326-117345 Msa1342890:CDS 40.0%
CATGGAGATGAAATGGAAGA+AGG + tig0006056:117344-117363 Msa1342890:CDS 40.0%
! TGAAATGGAAGAAGGTGCAT+AGG + tig0006056:117352-117371 Msa1342890:CDS 40.0%
TGAAGAAGATCTTGCTCTTG+CGG - tig0006056:117533-117552 None:intergenic 40.0%
GCAAGATCTTCTTCATTGCA+TGG + tig0006056:117538-117557 Msa1342890:CDS 40.0%
CTATACGCAACATCAAAGGA+TGG + tig0006056:117975-117994 Msa1342890:CDS 40.0%
GCTTGGCACATAATTAAGAG+GGG - tig0006056:118098-118117 None:intergenic 40.0%
ATACCCCACTTACATCACAA+TGG - tig0006056:118277-118296 None:intergenic 40.0%
GATGAGAAGAAGAACCAAGT+TGG - tig0006056:117076-117095 None:intergenic 40.0%
TCATCAGATAACAATGGCGA+TGG + tig0006056:117091-117110 Msa1342890:exon 40.0%
AATGGCGATGGCTTTCAAAA+TGG + tig0006056:117103-117122 Msa1342890:exon 40.0%
AATCTGAACAGGCTACTACT+GGG + tig0006056:117289-117308 Msa1342890:intron 40.0%
TGAGTGCAAGAACTCTTTCA+TGG + tig0006056:117326-117345 Msa1342890:CDS 40.0%
CATGGAGATGAAATGGAAGA+AGG + tig0006056:117344-117363 Msa1342890:CDS 40.0%
! TGAAATGGAAGAAGGTGCAT+AGG + tig0006056:117352-117371 Msa1342890:CDS 40.0%
TGAAGAAGATCTTGCTCTTG+CGG - tig0006056:117533-117552 None:intergenic 40.0%
GCAAGATCTTCTTCATTGCA+TGG + tig0006056:117538-117557 Msa1342890:CDS 40.0%
CTATACGCAACATCAAAGGA+TGG + tig0006056:117975-117994 Msa1342890:CDS 40.0%
GCTTGGCACATAATTAAGAG+GGG - tig0006056:118098-118117 None:intergenic 40.0%
ATACCCCACTTACATCACAA+TGG - tig0006056:118277-118296 None:intergenic 40.0%
GAATCTGAACAGGCTACTAC+TGG + tig0006056:117288-117307 Msa1342890:intron 45.0%
AATTGGACTCAACAAAGCCG+TGG + tig0006056:117649-117668 Msa1342890:intron 45.0%
!! GGATGGGTTAAGAAGAGCTT+TGG + tig0006056:117992-118011 Msa1342890:CDS 45.0%
!! GGGTTAAGAAGAGCTTTGGA+TGG + tig0006056:117996-118015 Msa1342890:CDS 45.0%
GAATCCCATCTCAGTTGGAT+CGG - tig0006056:118045-118064 None:intergenic 45.0%
ACATCGAATCCCATCTCAGT+TGG - tig0006056:118050-118069 None:intergenic 45.0%
TGGCACCATTGTGATGTAAG+TGG + tig0006056:118269-118288 Msa1342890:three_prime_UTR 45.0%
GGCACCATTGTGATGTAAGT+GGG + tig0006056:118270-118289 Msa1342890:three_prime_UTR 45.0%
GCACCATTGTGATGTAAGTG+GGG + tig0006056:118271-118290 Msa1342890:three_prime_UTR 45.0%
TGGTTGAGACTTGAGAGCAA+TGG + tig0006056:118414-118433 Msa1342890:three_prime_UTR 45.0%
ATTTGAAGGGAATGGGACTC+TGG - tig0006056:117000-117019 None:intergenic 45.0%
GAATCTGAACAGGCTACTAC+TGG + tig0006056:117288-117307 Msa1342890:intron 45.0%
AATTGGACTCAACAAAGCCG+TGG + tig0006056:117649-117668 Msa1342890:intron 45.0%
!! GGATGGGTTAAGAAGAGCTT+TGG + tig0006056:117992-118011 Msa1342890:CDS 45.0%
!! GGGTTAAGAAGAGCTTTGGA+TGG + tig0006056:117996-118015 Msa1342890:CDS 45.0%
GAATCCCATCTCAGTTGGAT+CGG - tig0006056:118045-118064 None:intergenic 45.0%
ACATCGAATCCCATCTCAGT+TGG - tig0006056:118050-118069 None:intergenic 45.0%
TGGCACCATTGTGATGTAAG+TGG + tig0006056:118269-118288 Msa1342890:three_prime_UTR 45.0%
GGCACCATTGTGATGTAAGT+GGG + tig0006056:118270-118289 Msa1342890:three_prime_UTR 45.0%
GCACCATTGTGATGTAAGTG+GGG + tig0006056:118271-118290 Msa1342890:three_prime_UTR 45.0%
TGGTTGAGACTTGAGAGCAA+TGG + tig0006056:118414-118433 Msa1342890:three_prime_UTR 45.0%
!!! AATTTATGATATTTTTATAA+TGG - tig0006056:117032-117051 None:intergenic 5.0%
!!! AATTTATGATATTTTTATAA+TGG - tig0006056:117032-117051 None:intergenic 5.0%
AACAGGCTACTACTGGGATG+TGG + tig0006056:117295-117314 Msa1342890:intron 50.0%
ACAGGCTACTACTGGGATGT+GGG + tig0006056:117296-117315 Msa1342890:intron 50.0%
AAGGCTTGTGACCGTTGACA+AGG + tig0006056:117404-117423 Msa1342890:CDS 50.0%
CTTGTGACCGTTGACAAGGT+TGG + tig0006056:117408-117427 Msa1342890:CDS 50.0%
AGGACCACCAACCTTGTCAA+CGG - tig0006056:117418-117437 None:intergenic 50.0%
TCTCAGTTGGATCGGTTGCT+TGG - tig0006056:118037-118056 None:intergenic 50.0%
AGCAACCGATCCAACTGAGA+TGG + tig0006056:118037-118056 Msa1342890:CDS 50.0%
GCAACCGATCCAACTGAGAT+GGG + tig0006056:118038-118057 Msa1342890:CDS 50.0%
AACAGGCTACTACTGGGATG+TGG + tig0006056:117295-117314 Msa1342890:intron 50.0%
ACAGGCTACTACTGGGATGT+GGG + tig0006056:117296-117315 Msa1342890:intron 50.0%
AAGGCTTGTGACCGTTGACA+AGG + tig0006056:117404-117423 Msa1342890:CDS 50.0%
CTTGTGACCGTTGACAAGGT+TGG + tig0006056:117408-117427 Msa1342890:CDS 50.0%
AGGACCACCAACCTTGTCAA+CGG - tig0006056:117418-117437 None:intergenic 50.0%
TCTCAGTTGGATCGGTTGCT+TGG - tig0006056:118037-118056 None:intergenic 50.0%
AGCAACCGATCCAACTGAGA+TGG + tig0006056:118037-118056 Msa1342890:CDS 50.0%
GCAACCGATCCAACTGAGAT+GGG + tig0006056:118038-118057 Msa1342890:CDS 50.0%
GTGACCGTTGACAAGGTTGG+TGG + tig0006056:117411-117430 Msa1342890:CDS 55.0%
!! GTTGACAAGGTTGGTGGTCC+TGG + tig0006056:117417-117436 Msa1342890:CDS 55.0%
TTAGATCGTCTACGGCGCCA+CGG - tig0006056:117669-117688 None:intergenic 55.0%
GTGACCGTTGACAAGGTTGG+TGG + tig0006056:117411-117430 Msa1342890:CDS 55.0%
!! GTTGACAAGGTTGGTGGTCC+TGG + tig0006056:117417-117436 Msa1342890:CDS 55.0%
TTAGATCGTCTACGGCGCCA+CGG - tig0006056:117669-117688 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0006056 gene 117000 118481 117000 ID=Msa1342890;Name=Msa1342890
tig0006056 mRNA 117000 118481 117000 ID=Msa1342890-mRNA-1;Parent=Msa1342890;Name=Msa1342890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=104|1|1|1|1|1|3|390|143
tig0006056 exon 117000 117124 117000 ID=Msa1342890-mRNA-1:exon:3820;Parent=Msa1342890-mRNA-1
tig0006056 exon 117300 117559 117300 ID=Msa1342890-mRNA-1:exon:3821;Parent=Msa1342890-mRNA-1
tig0006056 exon 117941 118481 117941 ID=Msa1342890-mRNA-1:exon:3822;Parent=Msa1342890-mRNA-1
tig0006056 five_prime_UTR 117000 117103 117000 ID=Msa1342890-mRNA-1:five_prime_utr;Parent=Msa1342890-mRNA-1
tig0006056 CDS 117104 117124 117104 ID=Msa1342890-mRNA-1:cds;Parent=Msa1342890-mRNA-1
tig0006056 CDS 117300 117559 117300 ID=Msa1342890-mRNA-1:cds;Parent=Msa1342890-mRNA-1
tig0006056 CDS 117941 118091 117941 ID=Msa1342890-mRNA-1:cds;Parent=Msa1342890-mRNA-1
tig0006056 three_prime_UTR 118092 118481 118092 ID=Msa1342890-mRNA-1:three_prime_utr;Parent=Msa1342890-mRNA-1
Gene Sequence

>Msa1342890

ATGGCGATGGCTTTCAAAATGGCTACTACTGGGATGTGGGTAACAGATGAGTGCAAGAACTCTTTCATGGAGATGAAATGGAAGAAGGTGCATAGGTACATAGTTTTCAAGATCGATGAAAAAACAAGGCTTGTGACCGTTGACAAGGTTGGTGGTCCTGGAGAAAACTATGATGATCTTGCTGCTTCTTTGCCTAATGATGATTGTAGATATGCTGTCTTTGATTTTGATTTTGTCACTGTTGACAACTGCCGCAAGAGCAAGATCTTCTTCATTGCATGGTCACCAACAGCATCAAGAATAAGAGAAAAGATACTATACGCAACATCAAAGGATGGGTTAAGAAGAGCTTTGGATGGAATCTCATATGAACTCCAAGCAACCGATCCAACTGAGATGGGATTCGATGTAATTCAAGACAGAGCCAAATAG
Protein sequence

>Msa1342890

MAMAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKTRLVTVDKVGGPGENYDDLAASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIREKILYATSKDGLRRALDGISYELQATDPTEMGFDVIQDRAK*