AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552260 MtrunA17_Chr3g0112041 87.805 123 10 2 28 145 61 183 1.56e-60 189
Msa0552260 MtrunA17_Chr4g0031921 60.169 118 38 3 27 139 60 173 1.26e-36 128
Msa0552260 MtrunA17_Chr4g0031911 58.475 118 40 3 27 139 60 173 3.43e-34 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552260 AT3G55530.1 82.051 117 15 3 28 139 62 177 6.83e-50 162

Find 149 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTCATATTATAAAATA+TGG 0.209225 4_1:-48738070 None:intergenic
GCAGCAGCCAGTGGCCTTCT+TGG 0.225465 4_1:+48735844 Msa0552260:CDS
GGCTGCTGCTGCATGAGCTT+GGG 0.225768 4_1:-48735830 None:intergenic
TGGCTGCTGCTGCATGAGCT+TGG 0.233454 4_1:-48735831 None:intergenic
GTCCACAAATACAAGGTTTC+TGG 0.243519 4_1:+48736180 Msa0552260:CDS
ATTAAAACTTTCCACAAGTT+TGG 0.270086 4_1:-48737988 None:intergenic
TCCTCTTCCACTTCTTAGTT+AGG 0.270309 4_1:+48733364 Msa0552260:five_prime_UTR
ACCTGAAGCTTTGTGGTATT+GGG 0.289083 4_1:+48733606 Msa0552260:five_prime_UTR
CGTGTATTCTTTGTATGTAT+TGG 0.294154 4_1:+48737094 Msa0552260:three_prime_UTR
TATGGTTGTAGATTATGTTT+TGG 0.299380 4_1:+48738047 Msa0552260:three_prime_UTR
CACCTGAAGCTTTGTGGTAT+TGG 0.307162 4_1:+48733605 Msa0552260:five_prime_UTR
TGGCCATAAGCTAATATCTT+AGG 0.352798 4_1:+48733504 Msa0552260:five_prime_UTR
ATCAGTTTCTAGATTCTAAA+CGG 0.353394 4_1:-48737497 None:intergenic
TTGTTCCTTAACATTGTAAA+CGG 0.354657 4_1:+48738294 Msa0552260:three_prime_UTR
GGAACAAATTATAAGGCTTC+CGG 0.358326 4_1:-48738278 None:intergenic
ATGTTAAGGAACAAATTATA+AGG 0.359162 4_1:-48738285 None:intergenic
TCCCAATACCACAAAGCTTC+AGG 0.364461 4_1:-48733607 None:intergenic
TTATGAAACTTTAAGAGCTC+TGG 0.370204 4_1:+48736098 Msa0552260:CDS
GATATTAGCTTATGGCCATT+TGG 0.374341 4_1:-48733499 None:intergenic
CCTCTTCCACTTCTTAGTTA+GGG 0.379752 4_1:+48733365 Msa0552260:five_prime_UTR
ATGTAGCCTCGAAGCTTTGT+AGG 0.380636 4_1:+48738241 Msa0552260:three_prime_UTR
TGTTTGGAGACTTCCAGATA+TGG 0.383401 4_1:+48735549 Msa0552260:five_prime_UTR
CTAAGAAGTGGAAGAGGACT+TGG 0.383672 4_1:-48733359 None:intergenic
ATCTCTTCCTCGGACATAGA+AGG 0.384845 4_1:-48736144 None:intergenic
ACATACCTTCAATGCAATTT+CGG 0.398132 4_1:+48738198 Msa0552260:three_prime_UTR
TAAAAGTTTAAAATTGAAAC+AGG 0.402809 4_1:-48738026 None:intergenic
CAGCCTAAGATATTAGCTTA+TGG 0.409580 4_1:-48733507 None:intergenic
CTGCGGCAACAAGGGATTTG+CGG 0.412826 4_1:+48737862 Msa0552260:three_prime_UTR
AGGATTGCACTGCTTGTGTT+TGG 0.414613 4_1:+48735533 Msa0552260:intron
TGCTTGGCTGACATCATCAT+GGG 0.416444 4_1:-48733688 None:intergenic
TGATTATGTGAGAAGAAATC+TGG 0.416765 4_1:+48737132 Msa0552260:three_prime_UTR
AATCCCTTGTTGCCGCAGCC+AGG 0.416854 4_1:-48737857 None:intergenic
CATCAGATATAGCCCATATC+TGG 0.418485 4_1:-48735562 None:intergenic
TAGCTTGCCCTCCTTGCATC+AGG 0.418652 4_1:+48736934 Msa0552260:CDS
TGTTCAGGTGAAGTTTCAAT+AGG 0.420701 4_1:-48737438 None:intergenic
TGCTGTACAGGTTAGGTTGT+TGG 0.427885 4_1:+48734841 Msa0552260:intron
TCAGAAGGTAGAAGTTGTAT+TGG 0.431779 4_1:+48734866 Msa0552260:five_prime_UTR
AACTGCCGAAATTGCATTGA+AGG 0.433351 4_1:-48738203 None:intergenic
AACGGTCACCTGAAGCTTTG+TGG 0.436580 4_1:+48733599 Msa0552260:five_prime_UTR
AAGCGCGACATCTTTGTTAG+TGG 0.437300 4_1:+48734941 Msa0552260:five_prime_UTR
GACTTAATGAGAACGAAAAC+AGG 0.438673 4_1:+48737241 Msa0552260:three_prime_UTR
TAGTCCCGTTTACAATGTTA+AGG 0.439290 4_1:-48738299 None:intergenic
GCTTTCTGGTTTCGTCCAAA+TGG 0.442554 4_1:+48733484 Msa0552260:five_prime_UTR
AACTTTAAGAGCTCTGGATT+CGG 0.443410 4_1:+48736104 Msa0552260:CDS
TTCAGCTGGCACTTCTTGAT+CGG 0.445031 4_1:+48735932 Msa0552260:CDS
GTAGGTGAAACAGAGATTGC+CGG 0.446732 4_1:+48738259 Msa0552260:three_prime_UTR
CCATGTTATGTTGTGCCGTT+AGG 0.448547 4_1:-48733767 None:intergenic
ATATTTCAACGAACATTACA+AGG 0.451546 4_1:-48733435 None:intergenic
AGGTACCCTTGTACCTTGCT+TGG 0.453384 4_1:-48733704 None:intergenic
TGTTCCTTAACATTGTAAAC+GGG 0.454719 4_1:+48738295 Msa0552260:three_prime_UTR
CGGCTTGCAAGTGCTATTGA+TGG 0.461962 4_1:-48735895 None:intergenic
TCAGCTGGCACTTCTTGATC+GGG 0.463787 4_1:+48735933 Msa0552260:CDS
GACCAGAAACCTTGTATTTG+TGG 0.466017 4_1:-48736182 None:intergenic
GTTTGGAGACTTCCAGATAT+GGG 0.469760 4_1:+48735550 Msa0552260:five_prime_UTR
TCAGTTTCTAGATTCTAAAC+GGG 0.471968 4_1:-48737496 None:intergenic
CAATAGTCAATATTGTTCAT+AGG 0.472393 4_1:-48737702 None:intergenic
TTGCTTGGCTGACATCATCA+TGG 0.474830 4_1:-48733689 None:intergenic
GTCAATATTGTTCATAGGCA+TGG 0.475876 4_1:-48737697 None:intergenic
GCTCACTTGCAGTGTATGAT+TGG 0.478221 4_1:+48736883 Msa0552260:CDS
AGTTGTATTGGAGTCGGTAT+AGG 0.482906 4_1:+48734878 Msa0552260:five_prime_UTR
GATCGGGAGTTTGATGATCT+AGG 0.485183 4_1:+48735949 Msa0552260:CDS
TTCATTCTGTGATACGCACT+TGG 0.486224 4_1:-48738111 None:intergenic
GGCACACACCTTGCAAGGTC+AGG 0.488849 4_1:-48737573 None:intergenic
TTGCAGCTCTGGCTAGTGCT+TGG 0.489119 4_1:+48735751 Msa0552260:intron
TAAAGAAAGGTGTATTTGCA+TGG 0.491504 4_1:-48733389 None:intergenic
TCGTGTTTGAAGACACTTGA+AGG 0.493320 4_1:+48735594 Msa0552260:CDS
AGGCTAGTTGCATTGATCCC+TGG 0.497142 4_1:+48737839 Msa0552260:three_prime_UTR
AGGGCGTCTCAGACTTCAGC+TGG 0.499276 4_1:+48735918 Msa0552260:CDS
ACATCTTTGTTAGTGGCAGC+AGG 0.500908 4_1:+48734948 Msa0552260:five_prime_UTR
TGTGCCGTTAGGCAGATTGA+TGG 0.507564 4_1:-48733756 None:intergenic
ATCCCTTGTTGCCGCAGCCA+GGG 0.509449 4_1:-48737856 None:intergenic
TCTTGATGGCTACAATGCTA+AGG 0.511885 4_1:+48735779 Msa0552260:CDS
GAAACCTTGTATTTGTGGAC+AGG 0.524408 4_1:-48736177 None:intergenic
CGAGGCTACATACAATCCTC+AGG 0.524500 4_1:-48738229 None:intergenic
CAGGATAATTCAAATGCGGT+TGG 0.526813 4_1:+48736836 Msa0552260:CDS
AACTCAAGCTCATGATGGAA+TGG 0.528423 4_1:-48737413 None:intergenic
AAGAGCATTTATCTCTTCCT+CGG 0.528824 4_1:-48736154 None:intergenic
GCTCATGCAGCAGCAGCCAG+TGG 0.529345 4_1:+48735835 Msa0552260:CDS
GTTTCACCTACAAAGCTTCG+AGG 0.531446 4_1:-48738247 None:intergenic
TGTGTGGCCAAGAAGGCCAC+TGG 0.533669 4_1:-48735851 None:intergenic
TGTCAGCCAAGCAAGGTACA+AGG 0.535950 4_1:+48733698 Msa0552260:five_prime_UTR
GTGTCTTCAAACACGACTCA+CGG 0.536372 4_1:-48735587 None:intergenic
CATTTATTAATCCAAACTTG+TGG 0.537070 4_1:+48737977 Msa0552260:three_prime_UTR
TGATTGGAGCAAGTTAATGT+TGG 0.538884 4_1:+48736899 Msa0552260:CDS
ATAGGTCACATGTGAGCTGT+TGG 0.539352 4_1:+48734896 Msa0552260:five_prime_UTR
ATCCCTGGCTGCGGCAACAA+GGG 0.539645 4_1:+48737854 Msa0552260:three_prime_UTR
TCGTTTGTGGCAGAAGACAC+AGG 0.541361 4_1:+48736817 Msa0552260:intron
GAGCGTTGGCATCTAACATA+GGG 0.543493 4_1:+48737154 Msa0552260:three_prime_UTR
GGAGCGTTGGCATCTAACAT+AGG 0.543520 4_1:+48737153 Msa0552260:three_prime_UTR
GATCCCTGGCTGCGGCAACA+AGG 0.547198 4_1:+48737853 Msa0552260:three_prime_UTR
AACATAGGGTTTACAAAGGG+TGG 0.549308 4_1:+48737168 Msa0552260:three_prime_UTR
TCTTCCTGTCCACAAATACA+AGG 0.550485 4_1:+48736173 Msa0552260:CDS
CAGATATGGGCTATATCTGA+TGG 0.553081 4_1:+48735563 Msa0552260:exon
TGTTACCCGTGCGTTTCTTG+TGG 0.553708 4_1:+48735647 Msa0552260:CDS
AGGTAAACTCAAGCTCATGA+TGG 0.554043 4_1:-48737418 None:intergenic
GGAGAAATCATTCATTCCAT+AGG 0.556807 4_1:-48737475 None:intergenic
TGCCTCTTCGAATTCTTGAA+CGG 0.557552 4_1:+48733581 Msa0552260:five_prime_UTR
TTCTTGGCCACACAGAACTA+CGG 0.560332 4_1:+48735860 Msa0552260:CDS
TTTCACAAGAGCCTCGACTT+CGG 0.561783 4_1:-48738333 None:intergenic
CCCTAACTAAGAAGTGGAAG+AGG 0.563192 4_1:-48733365 None:intergenic
GGTAGAAGTTGTATTGGAGT+CGG 0.564071 4_1:+48734872 Msa0552260:five_prime_UTR
GTCCTCATTTCTAGCGATCA+CGG 0.566900 4_1:-48733291 None:intergenic
AAACAGACCTGATGCAAGGA+GGG 0.569850 4_1:-48736941 None:intergenic
TGTAGATACCTGACCTTGCA+AGG 0.570052 4_1:+48737565 Msa0552260:three_prime_UTR
GGGGAGGCACACACCTTGCA+AGG 0.570548 4_1:-48737578 None:intergenic
TGAGAAGAAATCTGGAGCGT+TGG 0.572625 4_1:+48737140 Msa0552260:three_prime_UTR
AAAGAAAGGTGTATTTGCAT+GGG 0.573502 4_1:-48733388 None:intergenic
CCTAACGGCACAACATAACA+TGG 0.576607 4_1:+48733767 Msa0552260:five_prime_UTR
GTTAGGTTGTTGGAATCAGA+AGG 0.577503 4_1:+48734851 Msa0552260:five_prime_UTR
CAATAGCACTTGCAAGCCGA+GGG 0.579957 4_1:+48735899 Msa0552260:CDS
ACTTGCGAGTCTGAATTCAC+AGG 0.580218 4_1:+48733663 Msa0552260:five_prime_UTR
TGTCTTCAAACACGACTCAC+GGG 0.581712 4_1:-48735586 None:intergenic
TCAATAGCACTTGCAAGCCG+AGG 0.581721 4_1:+48735898 Msa0552260:CDS
AAGAGACAAATCAGAACAGT+GGG 0.581734 4_1:-48733316 None:intergenic
TACCGTGATCGCTAGAAATG+AGG 0.582503 4_1:+48733289 Msa0552260:five_prime_UTR
AGAAACGCACGGGTAACAAA+CGG 0.583364 4_1:-48735642 None:intergenic
GCTGAAGTCTGAGACGCCCT+CGG 0.586735 4_1:-48735915 None:intergenic
TACTGCACCTTCTATGTCCG+AGG 0.589699 4_1:+48736137 Msa0552260:CDS
CGTGTTTGAAGACACTTGAA+GGG 0.593182 4_1:+48735595 Msa0552260:CDS
GTTGCATTGATCCCTGGCTG+CGG 0.599433 4_1:+48737845 Msa0552260:three_prime_UTR
CATGGGCCCTAACTAAGAAG+TGG 0.602199 4_1:-48733371 None:intergenic
ACTGAAATGTTGATTTAATG+TGG 0.606267 4_1:-48737648 None:intergenic
CTTGCAAGTGCTATTGATGG+AGG 0.610782 4_1:-48735892 None:intergenic
GCCGTTAGGCAGATTGATGG+AGG 0.611185 4_1:-48733753 None:intergenic
AAGTGAAGTAAATATTTGTG+CGG 0.612370 4_1:+48737674 Msa0552260:three_prime_UTR
CTTGCGAGTCTGAATTCACA+GGG 0.614185 4_1:+48733664 Msa0552260:five_prime_UTR
GCAAGTGAGCTCATCATCAG+AGG 0.615069 4_1:-48736870 None:intergenic
GCTTGGCTGACATCATCATG+GGG 0.617695 4_1:-48733687 None:intergenic
TCCTACCACAAGAAACGCAC+GGG 0.620429 4_1:-48735652 None:intergenic
ATCTAACATAGGGTTTACAA+AGG 0.621861 4_1:+48737164 Msa0552260:three_prime_UTR
GTAGTTCTGTGTGGCCAAGA+AGG 0.622680 4_1:-48735858 None:intergenic
TAGGCAGATTGATGGAGGCA+AGG 0.623896 4_1:-48733748 None:intergenic
GCCTCCATCAATCTGCCTAA+CGG 0.628952 4_1:+48733752 Msa0552260:five_prime_UTR
TCTAACATAGGGTTTACAAA+GGG 0.631230 4_1:+48737165 Msa0552260:three_prime_UTR
GTGCATAGAAGCCGAAGTCG+AGG 0.634827 4_1:+48738322 Msa0552260:three_prime_UTR
GTCAGCCAAGCAAGGTACAA+GGG 0.642769 4_1:+48733699 Msa0552260:five_prime_UTR
AATGAAACAGACCTGATGCA+AGG 0.642849 4_1:-48736945 None:intergenic
ATGATGATGTCAGCCAAGCA+AGG 0.643183 4_1:+48733691 Msa0552260:five_prime_UTR
CTCCTACCACAAGAAACGCA+CGG 0.646206 4_1:-48735653 None:intergenic
AAAGAGACAAATCAGAACAG+TGG 0.648910 4_1:-48733317 None:intergenic
GTGAATTCAGACTCGCAAGT+GGG 0.653816 4_1:-48733660 None:intergenic
TGTGAATTCAGACTCGCAAG+TGG 0.664881 4_1:-48733661 None:intergenic
GACACAGGATAATTCAAATG+CGG 0.672978 4_1:+48736832 Msa0552260:CDS
AATTTCGGCAGTTACACCTG+AGG 0.678139 4_1:+48738213 Msa0552260:three_prime_UTR
GAAACAGACCTGATGCAAGG+AGG 0.682002 4_1:-48736942 None:intergenic
AGACAAATCAGAACAGTGGG+TGG 0.684259 4_1:-48733313 None:intergenic
TCGACAAAGTATCAACCATG+AGG 0.696354 4_1:-48737760 None:intergenic
GACCGTTCAAGAATTCGAAG+AGG 0.699725 4_1:-48733583 None:intergenic
TATGCAACCGTAGTTCTGTG+TGG 0.732630 4_1:-48735867 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTGTTTAATATATAATT+TGG - chr4_1:48734485-48734504 None:intergenic 10.0%
!! TCTTTATATAATTTAAAAAC+TGG + chr4_1:48734731-48734750 Msa0552260:intron 10.0%
!!! AAAGCTTTATATATATATTT+TGG + chr4_1:48736611-48736630 Msa0552260:intron 10.0%
!! TATATAATGAGTACAAAAAA+TGG - chr4_1:48733824-48733843 None:intergenic 15.0%
!!! AAAAATTAATTGTTGTTTGT+TGG - chr4_1:48733942-48733961 None:intergenic 15.0%
!! TTTATCAAAACAAAATGAAA+AGG + chr4_1:48734445-48734464 Msa0552260:intron 15.0%
!! AATATTATTATCAACGTATA+AGG - chr4_1:48734760-48734779 None:intergenic 15.0%
!! ATTAGCTAATCTTATTAAAA+AGG + chr4_1:48735262-48735281 Msa0552260:intron 15.0%
!! ATTAGCTAATCTTATTAAAA+AGG + chr4_1:48735262-48735281 Msa0552260:intron 15.0%
!! TAACATGAAAAAATAATTGA+TGG - chr4_1:48735507-48735526 None:intergenic 15.0%
!! AAAAGAACAAAATTAGATAT+AGG - chr4_1:48735683-48735702 None:intergenic 15.0%
!! AAATTGAAAATTCATATTTG+AGG + chr4_1:48736353-48736372 Msa0552260:intron 15.0%
!! AATTGAAAATTCATATTTGA+GGG + chr4_1:48736354-48736373 Msa0552260:intron 15.0%
!!! TATATTTTGGATAATTAACT+CGG + chr4_1:48736624-48736643 Msa0552260:intron 15.0%
!!! AACTACAGATAAAATTTTAT+AGG - chr4_1:48737331-48737350 None:intergenic 15.0%
!!! TAAAAGTTTAAAATTGAAAC+AGG - chr4_1:48738029-48738048 None:intergenic 15.0%
!!! GTTTCAATTTTAAACTTTTA+TGG + chr4_1:48738029-48738048 Msa0552260:three_prime_UTR 15.0%
!! TATAAAGATAACTGTTGATA+TGG + chr4_1:48733840-48733859 Msa0552260:intron 20.0%
!! CTTCCTGTTTATATATATAA+AGG + chr4_1:48733903-48733922 Msa0552260:intron 20.0%
!! ATGCCTTTATATATATAAAC+AGG - chr4_1:48733909-48733928 None:intergenic 20.0%
!! AAGTAAAAGAAACAGTTAAA+GGG + chr4_1:48734514-48734533 Msa0552260:intron 20.0%
!! CAACTAGAATTTATTTATCA+TGG + chr4_1:48735005-48735024 Msa0552260:intron 20.0%
!! AAGCAATTACTGTAAATTTA+TGG + chr4_1:48735090-48735109 Msa0552260:intron 20.0%
!!! TTTTTTCAATCTATTCTCAA+GGG + chr4_1:48735123-48735142 Msa0552260:intron 20.0%
!! AAACTAAATCTTCAAACAAT+AGG - chr4_1:48735473-48735492 None:intergenic 20.0%
!! AAGAAAAAAAAAACTGAGTA+AGG - chr4_1:48736064-48736083 None:intergenic 20.0%
!! AATGTCAAAATCCATTTAAA+GGG - chr4_1:48736248-48736267 None:intergenic 20.0%
!!! ATTTTATCTGTAGTTGAAAT+TGG + chr4_1:48737336-48737355 Msa0552260:three_prime_UTR 20.0%
!!! TAAAATGCTTTTCAAAACAA+GGG - chr4_1:48737382-48737401 None:intergenic 20.0%
!!! TTTTGAAAAGCATTTTACTT+TGG + chr4_1:48737385-48737404 Msa0552260:three_prime_UTR 20.0%
!!! AATATCTACACAACTTTTTT+GGG - chr4_1:48737623-48737642 None:intergenic 20.0%
!!! AAATATCTACACAACTTTTT+TGG - chr4_1:48737624-48737643 None:intergenic 20.0%
!! ATGTTAAGGAACAAATTATA+AGG - chr4_1:48738288-48738307 None:intergenic 20.0%
!!! TCTTTTGAACAGTTTGAAAT+TGG + chr4_1:48733335-48733354 Msa0552260:five_prime_UTR 25.0%
!! GCAGATTTTCAAATAAAGAA+AGG - chr4_1:48733405-48733424 None:intergenic 25.0%
! AACATTACAAGGAAAAAATG+AGG - chr4_1:48733427-48733446 None:intergenic 25.0%
! ATATTTCAACGAACATTACA+AGG - chr4_1:48733438-48733457 None:intergenic 25.0%
!!! TATATTTTCTCTTAGCTTTC+TGG + chr4_1:48733470-48733489 Msa0552260:five_prime_UTR 25.0%
! ATAATTTGGCAAATTGTAGA+AGG - chr4_1:48734471-48734490 None:intergenic 25.0%
! GAAGTAAAAGAAACAGTTAA+AGG + chr4_1:48734513-48734532 Msa0552260:intron 25.0%
!! TATAAAGTGTCAGTATCTTA+TGG - chr4_1:48735037-48735056 None:intergenic 25.0%
! TAAGATACTGACACTTTATA+TGG + chr4_1:48735037-48735056 Msa0552260:intron 25.0%
! TGTAAATTTATGGTTATGCT+TGG + chr4_1:48735100-48735119 Msa0552260:intron 25.0%
!!! GTTTTTTCAATCTATTCTCA+AGG + chr4_1:48735122-48735141 Msa0552260:intron 25.0%
!! AATAATTGATGGTAACTACA+TGG - chr4_1:48735496-48735515 None:intergenic 25.0%
!!! ATTTTTTCATGTTACCAATC+AGG + chr4_1:48735513-48735532 Msa0552260:intron 25.0%
! GAATGTCAAAATCCATTTAA+AGG - chr4_1:48736249-48736268 None:intergenic 25.0%
!! GTTATTTCGATTAAGAACTT+TGG + chr4_1:48736474-48736493 Msa0552260:intron 25.0%
! AGTTAGTTATCTTAAAGTCT+TGG + chr4_1:48736673-48736692 Msa0552260:intron 25.0%
! GTTAGTTATCTTAAAGTCTT+GGG + chr4_1:48736674-48736693 Msa0552260:intron 25.0%
! TTAGTTATCTTAAAGTCTTG+GGG + chr4_1:48736675-48736694 Msa0552260:intron 25.0%
!! TACAATCTTTTCATTTAGTG+TGG + chr4_1:48736765-48736784 Msa0552260:intron 25.0%
!! GTAAAATGCTTTTCAAAACA+AGG - chr4_1:48737383-48737402 None:intergenic 25.0%
! GAACAAAAAAAATAGTGTTC+AGG - chr4_1:48737456-48737475 None:intergenic 25.0%
!!! CACTATTTTTTTTGTTCCTA+TGG + chr4_1:48737459-48737478 Msa0552260:three_prime_UTR 25.0%
!! ATCAGTTTCTAGATTCTAAA+CGG - chr4_1:48737500-48737519 None:intergenic 25.0%
!!! ACTGAAATGTTGATTTAATG+TGG - chr4_1:48737651-48737670 None:intergenic 25.0%
! AAGTGAAGTAAATATTTGTG+CGG + chr4_1:48737674-48737693 Msa0552260:three_prime_UTR 25.0%
! CAATAGTCAATATTGTTCAT+AGG - chr4_1:48737705-48737724 None:intergenic 25.0%
! CTAAGTATAAAAAAACCTCA+TGG + chr4_1:48737745-48737764 Msa0552260:three_prime_UTR 25.0%
! CATTTATTAATCCAAACTTG+TGG + chr4_1:48737977-48737996 Msa0552260:three_prime_UTR 25.0%
! ATTAAAACTTTCCACAAGTT+TGG - chr4_1:48737991-48738010 None:intergenic 25.0%
! GAAACAGGACTAAAAAAAAA+TGG - chr4_1:48738014-48738033 None:intergenic 25.0%
!! TATGGTTGTAGATTATGTTT+TGG + chr4_1:48738047-48738066 Msa0552260:three_prime_UTR 25.0%
! TTGTTCCTTAACATTGTAAA+CGG + chr4_1:48738294-48738313 Msa0552260:three_prime_UTR 25.0%
! AAAGAAAGGTGTATTTGCAT+GGG - chr4_1:48733391-48733410 None:intergenic 30.0%
! TAAAGAAAGGTGTATTTGCA+TGG - chr4_1:48733392-48733411 None:intergenic 30.0%
!! AGAGATTTCCATTTTTCTCA+AGG - chr4_1:48733727-48733746 None:intergenic 30.0%
TATATAAACAGGAAGATACC+AGG - chr4_1:48733898-48733917 None:intergenic 30.0%
ATATAACAATCAGTGAGTTC+TGG - chr4_1:48733985-48734004 None:intergenic 30.0%
ATCTCCTCAAAAGAAAGTTT+GGG - chr4_1:48734022-48734041 None:intergenic 30.0%
! TTTGTGCAAATTTTTACTGC+AGG - chr4_1:48734059-48734078 None:intergenic 30.0%
CACAAATTTGCACAAATTTG+AGG + chr4_1:48734090-48734109 Msa0552260:intron 30.0%
!!! ATGCTTGTTGTGATTTCTTT+TGG + chr4_1:48734134-48734153 Msa0552260:intron 30.0%
GTACGAATCTATCATCAATT+TGG + chr4_1:48734156-48734175 Msa0552260:intron 30.0%
CAGTAATTCAAAAAGCTCAA+TGG - chr4_1:48734211-48734230 None:intergenic 30.0%
! TTTTGAATTACTGTCTCGAA+TGG + chr4_1:48734218-48734237 Msa0552260:intron 30.0%
TGATTCTGCTTTATAACTGA+GGG - chr4_1:48734384-48734403 None:intergenic 30.0%
! TCATAATCTCAAGTCTTATC+TGG + chr4_1:48734677-48734696 Msa0552260:intron 30.0%
!! CTTTCTTTTTGAAAAGGCAA+AGG - chr4_1:48734924-48734943 None:intergenic 30.0%
GGATTACTATAGTCAACAAT+GGG - chr4_1:48735294-48735313 None:intergenic 30.0%
AGGATTACTATAGTCAACAA+TGG - chr4_1:48735295-48735314 None:intergenic 30.0%
! AATCCTGCTATCATTTTGTT+CGG + chr4_1:48735309-48735328 Msa0552260:intron 30.0%
AACGAAAACTAAATCTTCAC+GGG - chr4_1:48735370-48735389 None:intergenic 30.0%
CAACGAAAACTAAATCTTCA+CGG - chr4_1:48735371-48735390 None:intergenic 30.0%
GGATTACTATAGTCAACAAT+GGG - chr4_1:48735294-48735313 None:intergenic 30.0%
AGGATTACTATAGTCAACAA+TGG - chr4_1:48735295-48735314 None:intergenic 30.0%
! TTATGAAACTTTAAGAGCTC+TGG + chr4_1:48736098-48736117 Msa0552260:CDS 30.0%
TGTTATTACCTCCCTTTAAA+TGG + chr4_1:48736234-48736253 Msa0552260:intron 30.0%
ATTTGAGGGTGAAAAAGTAA+AGG + chr4_1:48736368-48736387 Msa0552260:intron 30.0%
!!! ATTGAAATGCTGATTTTCAC+TGG + chr4_1:48736448-48736467 Msa0552260:intron 30.0%
GTAATAATAGGCATCACTAA+AGG - chr4_1:48736502-48736521 None:intergenic 30.0%
ACACGACATAGAGTAATAAT+AGG - chr4_1:48736514-48736533 None:intergenic 30.0%
! CATTTTATCTGCATATGAAG+AGG + chr4_1:48736537-48736556 Msa0552260:intron 30.0%
AATGTTGTATACTCGTCATA+CGG - chr4_1:48736722-48736741 None:intergenic 30.0%
! GATTCATTTCTTTTCGTTTG+TGG + chr4_1:48736804-48736823 Msa0552260:intron 30.0%
CGTGTATTCTTTGTATGTAT+TGG + chr4_1:48737094-48737113 Msa0552260:three_prime_UTR 30.0%
TGATTATGTGAGAAGAAATC+TGG + chr4_1:48737132-48737151 Msa0552260:three_prime_UTR 30.0%
ATCTAACATAGGGTTTACAA+AGG + chr4_1:48737164-48737183 Msa0552260:three_prime_UTR 30.0%
TCTAACATAGGGTTTACAAA+GGG + chr4_1:48737165-48737184 Msa0552260:three_prime_UTR 30.0%
! TCAGTTTCTAGATTCTAAAC+GGG - chr4_1:48737499-48737518 None:intergenic 30.0%
CAAGGAAAAAACTAGATTAG+GGG - chr4_1:48737600-48737619 None:intergenic 30.0%
GCAAGGAAAAAACTAGATTA+GGG - chr4_1:48737601-48737620 None:intergenic 30.0%
!! TGTTTTTATCTTGTAGTCTC+AGG + chr4_1:48737819-48737838 Msa0552260:three_prime_UTR 30.0%
ACATACCTTCAATGCAATTT+CGG + chr4_1:48738198-48738217 Msa0552260:three_prime_UTR 30.0%
TGTTCCTTAACATTGTAAAC+GGG + chr4_1:48738295-48738314 Msa0552260:three_prime_UTR 30.0%
AAGAGACAAATCAGAACAGT+GGG - chr4_1:48733319-48733338 None:intergenic 35.0%
AAAGAGACAAATCAGAACAG+TGG - chr4_1:48733320-48733339 None:intergenic 35.0%
! GATATTAGCTTATGGCCATT+TGG - chr4_1:48733502-48733521 None:intergenic 35.0%
TGGCCATAAGCTAATATCTT+AGG + chr4_1:48733504-48733523 Msa0552260:five_prime_UTR 35.0%
! CAGCCTAAGATATTAGCTTA+TGG - chr4_1:48733510-48733529 None:intergenic 35.0%
! AACTCCCAAACTTTCTTTTG+AGG + chr4_1:48734015-48734034 Msa0552260:intron 35.0%
GATCTCCTCAAAAGAAAGTT+TGG - chr4_1:48734023-48734042 None:intergenic 35.0%
TGGAAAATCTCAGAAGCTAT+TGG - chr4_1:48734191-48734210 None:intergenic 35.0%
TACGATGCAGATAAAAGAAC+CGG - chr4_1:48734270-48734289 None:intergenic 35.0%
ATTACACTCTTTAGTCCACA+TGG + chr4_1:48734294-48734313 Msa0552260:intron 35.0%
!!! AGTCCACATGGTGAATTTTT+TGG + chr4_1:48734306-48734325 Msa0552260:intron 35.0%
CTTCCAAAAAATTCACCATG+TGG - chr4_1:48734312-48734331 None:intergenic 35.0%
CTGATGATACAGTCAAAAAG+TGG - chr4_1:48734343-48734362 None:intergenic 35.0%
TATCATCAGTTCAAAAGTCC+CGG + chr4_1:48734354-48734373 Msa0552260:intron 35.0%
GATTCTGCTTTATAACTGAG+GGG - chr4_1:48734383-48734402 None:intergenic 35.0%
CTGATTCTGCTTTATAACTG+AGG - chr4_1:48734385-48734404 None:intergenic 35.0%
ACATAATTAGCTACATGGTG+TGG - chr4_1:48734554-48734573 None:intergenic 35.0%
CACAGACATAATTAGCTACA+TGG - chr4_1:48734559-48734578 None:intergenic 35.0%
TTACACTATTTGAGCTTTGC+AGG + chr4_1:48734628-48734647 Msa0552260:intron 35.0%
GAGATTATGACATAGATGCA+AGG - chr4_1:48734667-48734686 None:intergenic 35.0%
CTTTACTTCCAGTCACAATT+AGG - chr4_1:48734708-48734727 None:intergenic 35.0%
TCAGAAGGTAGAAGTTGTAT+TGG + chr4_1:48734866-48734885 Msa0552260:five_prime_UTR 35.0%
GAAGACTACTTACTTTACAC+TGG + chr4_1:48735335-48735354 Msa0552260:intron 35.0%
!! TTACTTTACACTGGCTTTCT+TGG + chr4_1:48735344-48735363 Msa0552260:intron 35.0%
TAGGAAGACTAAATGATAGC+AGG - chr4_1:48735454-48735473 None:intergenic 35.0%
AAACAGAATGAACAGCATTG+AGG - chr4_1:48735733-48735752 None:intergenic 35.0%
!! AACTTTAAGAGCTCTGGATT+CGG + chr4_1:48736104-48736123 Msa0552260:CDS 35.0%
!! AAGAGCATTTATCTCTTCCT+CGG - chr4_1:48736157-48736176 None:intergenic 35.0%
!! TGGCAGATTACTTACTTTTG+GGG - chr4_1:48736207-48736226 None:intergenic 35.0%
!! CTGGCAGATTACTTACTTTT+GGG - chr4_1:48736208-48736227 None:intergenic 35.0%
! TCTGGCAGATTACTTACTTT+TGG - chr4_1:48736209-48736228 None:intergenic 35.0%
GGAGGTAATAACAATTGATC+TGG - chr4_1:48736227-48736246 None:intergenic 35.0%
GTCAAAATCCATTTAAAGGG+AGG - chr4_1:48736245-48736264 None:intergenic 35.0%
! ATATTTTCTTTCCCCATCCT+CGG + chr4_1:48736297-48736316 Msa0552260:intron 35.0%
! ATAGTGAGTTTCATTTTCCG+AGG - chr4_1:48736317-48736336 None:intergenic 35.0%
! TCTTTTCATTTAGTGTGGAG+TGG + chr4_1:48736770-48736789 Msa0552260:intron 35.0%
GACACAGGATAATTCAAATG+CGG + chr4_1:48736832-48736851 Msa0552260:CDS 35.0%
TGATTGGAGCAAGTTAATGT+TGG + chr4_1:48736899-48736918 Msa0552260:CDS 35.0%
GACTTAATGAGAACGAAAAC+AGG + chr4_1:48737241-48737260 Msa0552260:three_prime_UTR 35.0%
TGTTCAGGTGAAGTTTCAAT+AGG - chr4_1:48737441-48737460 None:intergenic 35.0%
GGAGAAATCATTCATTCCAT+AGG - chr4_1:48737478-48737497 None:intergenic 35.0%
GGCAAGGAAAAAACTAGATT+AGG - chr4_1:48737602-48737621 None:intergenic 35.0%
GTCAATATTGTTCATAGGCA+TGG - chr4_1:48737700-48737719 None:intergenic 35.0%
GGAACAAATTATAAGGCTTC+CGG - chr4_1:48738281-48738300 None:intergenic 35.0%
TAGTCCCGTTTACAATGTTA+AGG - chr4_1:48738302-48738321 None:intergenic 35.0%
TCCTCTTCCACTTCTTAGTT+AGG + chr4_1:48733364-48733383 Msa0552260:five_prime_UTR 40.0%
CCTCTTCCACTTCTTAGTTA+GGG + chr4_1:48733365-48733384 Msa0552260:five_prime_UTR 40.0%
TGCCTCTTCGAATTCTTGAA+CGG + chr4_1:48733581-48733600 Msa0552260:five_prime_UTR 40.0%
! ACCTGAAGCTTTGTGGTATT+GGG + chr4_1:48733606-48733625 Msa0552260:five_prime_UTR 40.0%
!! CAAGGGTACCTTGAGAAAAA+TGG + chr4_1:48733716-48733735 Msa0552260:five_prime_UTR 40.0%
AAAATGGTTCAAGAGCAGCA+TGG - chr4_1:48733808-48733827 None:intergenic 40.0%
TAAACAGGAAGATACCAGGA+GGG - chr4_1:48733894-48733913 None:intergenic 40.0%
ATAAACAGGAAGATACCAGG+AGG - chr4_1:48733895-48733914 None:intergenic 40.0%
TCATTATCTGCTGCTAGTTC+CGG + chr4_1:48734248-48734267 Msa0552260:intron 40.0%
TTTATAACTGAGGGGATACC+GGG - chr4_1:48734375-48734394 None:intergenic 40.0%
CTTTATAACTGAGGGGATAC+CGG - chr4_1:48734376-48734395 None:intergenic 40.0%
CTATTTGAGCTTTGCAGGTT+CGG + chr4_1:48734633-48734652 Msa0552260:intron 40.0%
TATTTGAGCTTTGCAGGTTC+GGG + chr4_1:48734634-48734653 Msa0552260:intron 40.0%
CTTCCAGTCACAATTAGGTA+TGG - chr4_1:48734703-48734722 None:intergenic 40.0%
AACCTGTACAGCATGTATGT+GGG - chr4_1:48734834-48734853 None:intergenic 40.0%
TAACCTGTACAGCATGTATG+TGG - chr4_1:48734835-48734854 None:intergenic 40.0%
ACATACATGCTGTACAGGTT+AGG + chr4_1:48734834-48734853 Msa0552260:intron 40.0%
! GTTAGGTTGTTGGAATCAGA+AGG + chr4_1:48734851-48734870 Msa0552260:five_prime_UTR 40.0%
GGTAGAAGTTGTATTGGAGT+CGG + chr4_1:48734872-48734891 Msa0552260:five_prime_UTR 40.0%
AGTTGTATTGGAGTCGGTAT+AGG + chr4_1:48734878-48734897 Msa0552260:five_prime_UTR 40.0%
!! GTCGCGCTTTCTTTTTGAAA+AGG - chr4_1:48734930-48734949 None:intergenic 40.0%
! CTGCTATCATTTTGTTCGGA+GGG + chr4_1:48735313-48735332 Msa0552260:intron 40.0%
TGTTTGGAGACTTCCAGATA+TGG + chr4_1:48735549-48735568 Msa0552260:five_prime_UTR 40.0%
GTTTGGAGACTTCCAGATAT+GGG + chr4_1:48735550-48735569 Msa0552260:five_prime_UTR 40.0%
CATCAGATATAGCCCATATC+TGG - chr4_1:48735565-48735584 None:intergenic 40.0%
! CAGATATGGGCTATATCTGA+TGG + chr4_1:48735563-48735582 Msa0552260:exon 40.0%
TCGTGTTTGAAGACACTTGA+AGG + chr4_1:48735594-48735613 Msa0552260:CDS 40.0%
CGTGTTTGAAGACACTTGAA+GGG + chr4_1:48735595-48735614 Msa0552260:CDS 40.0%
!!! AGTGCTTGGTGTTTTCTTGA+TGG + chr4_1:48735765-48735784 Msa0552260:CDS 40.0%
! TCTTGATGGCTACAATGCTA+AGG + chr4_1:48735779-48735798 Msa0552260:CDS 40.0%
TCTTCCTGTCCACAAATACA+AGG + chr4_1:48736173-48736192 Msa0552260:CDS 40.0%
GAAACCTTGTATTTGTGGAC+AGG - chr4_1:48736180-48736199 None:intergenic 40.0%
GTCCACAAATACAAGGTTTC+TGG + chr4_1:48736180-48736199 Msa0552260:CDS 40.0%
GACCAGAAACCTTGTATTTG+TGG - chr4_1:48736185-48736204 None:intergenic 40.0%
! AGTTTCATTTTCCGAGGATG+GGG - chr4_1:48736311-48736330 None:intergenic 40.0%
! GAGTTTCATTTTCCGAGGAT+GGG - chr4_1:48736312-48736331 None:intergenic 40.0%
! TGAGTTTCATTTTCCGAGGA+TGG - chr4_1:48736313-48736332 None:intergenic 40.0%
CAGGATAATTCAAATGCGGT+TGG + chr4_1:48736836-48736855 Msa0552260:CDS 40.0%
AATGAAACAGACCTGATGCA+AGG - chr4_1:48736948-48736967 None:intergenic 40.0%
AACATAGGGTTTACAAAGGG+TGG + chr4_1:48737168-48737187 Msa0552260:three_prime_UTR 40.0%
! AACTCAAGCTCATGATGGAA+TGG - chr4_1:48737416-48737435 None:intergenic 40.0%
AGGTAAACTCAAGCTCATGA+TGG - chr4_1:48737421-48737440 None:intergenic 40.0%
GGAAAAAACTAGATTAGGGG+AGG - chr4_1:48737597-48737616 None:intergenic 40.0%
!!! CTACACAACTTTTTTGGGCA+AGG - chr4_1:48737618-48737637 None:intergenic 40.0%
TTCATTCTGTGATACGCACT+TGG - chr4_1:48738114-48738133 None:intergenic 40.0%
AACTGCCGAAATTGCATTGA+AGG - chr4_1:48738206-48738225 None:intergenic 40.0%
TACCGTGATCGCTAGAAATG+AGG + chr4_1:48733289-48733308 Msa0552260:five_prime_UTR 45.0%
!! GTCCTCATTTCTAGCGATCA+CGG - chr4_1:48733294-48733313 None:intergenic 45.0%
AGACAAATCAGAACAGTGGG+TGG - chr4_1:48733316-48733335 None:intergenic 45.0%
CTAAGAAGTGGAAGAGGACT+TGG - chr4_1:48733362-48733381 None:intergenic 45.0%
CCCTAACTAAGAAGTGGAAG+AGG - chr4_1:48733368-48733387 None:intergenic 45.0%
!! GCTTTCTGGTTTCGTCCAAA+TGG + chr4_1:48733484-48733503 Msa0552260:five_prime_UTR 45.0%
GACCGTTCAAGAATTCGAAG+AGG - chr4_1:48733586-48733605 None:intergenic 45.0%
! CACCTGAAGCTTTGTGGTAT+TGG + chr4_1:48733605-48733624 Msa0552260:five_prime_UTR 45.0%
TCCCAATACCACAAAGCTTC+AGG - chr4_1:48733610-48733629 None:intergenic 45.0%
GTGAATTCAGACTCGCAAGT+GGG - chr4_1:48733663-48733682 None:intergenic 45.0%
TGTGAATTCAGACTCGCAAG+TGG - chr4_1:48733664-48733683 None:intergenic 45.0%
ACTTGCGAGTCTGAATTCAC+AGG + chr4_1:48733663-48733682 Msa0552260:five_prime_UTR 45.0%
CTTGCGAGTCTGAATTCACA+GGG + chr4_1:48733664-48733683 Msa0552260:five_prime_UTR 45.0%
TGCTTGGCTGACATCATCAT+GGG - chr4_1:48733691-48733710 None:intergenic 45.0%
TTGCTTGGCTGACATCATCA+TGG - chr4_1:48733692-48733711 None:intergenic 45.0%
! ATGATGATGTCAGCCAAGCA+AGG + chr4_1:48733691-48733710 Msa0552260:five_prime_UTR 45.0%
! CCATGTTATGTTGTGCCGTT+AGG - chr4_1:48733770-48733789 None:intergenic 45.0%
CCTAACGGCACAACATAACA+TGG + chr4_1:48733767-48733786 Msa0552260:five_prime_UTR 45.0%
GGGTACGATGATGAAGAAAC+TGG - chr4_1:48733873-48733892 None:intergenic 45.0%
AAACAGGAAGATACCAGGAG+GGG - chr4_1:48733893-48733912 None:intergenic 45.0%
TGGCCATACCTAATTGTGAC+TGG + chr4_1:48734697-48734716 Msa0552260:intron 45.0%
GCTTGCAATGCACTGTGTTA+AGG + chr4_1:48734785-48734804 Msa0552260:intron 45.0%
! TGCTGTACAGGTTAGGTTGT+TGG + chr4_1:48734841-48734860 Msa0552260:intron 45.0%
ATAGGTCACATGTGAGCTGT+TGG + chr4_1:48734896-48734915 Msa0552260:five_prime_UTR 45.0%
AAGCGCGACATCTTTGTTAG+TGG + chr4_1:48734941-48734960 Msa0552260:five_prime_UTR 45.0%
ACATCTTTGTTAGTGGCAGC+AGG + chr4_1:48734948-48734967 Msa0552260:five_prime_UTR 45.0%
CCTCCGAACAAAATGATAGC+AGG - chr4_1:48735315-48735334 None:intergenic 45.0%
! CCTGCTATCATTTTGTTCGG+AGG + chr4_1:48735312-48735331 Msa0552260:intron 45.0%
ACAAGCAGTGCAATCCTGAT+TGG - chr4_1:48735530-48735549 None:intergenic 45.0%
AGGATTGCACTGCTTGTGTT+TGG + chr4_1:48735533-48735552 Msa0552260:intron 45.0%
TGTCTTCAAACACGACTCAC+GGG - chr4_1:48735589-48735608 None:intergenic 45.0%
GTGTCTTCAAACACGACTCA+CGG - chr4_1:48735590-48735609 None:intergenic 45.0%
AGAAACGCACGGGTAACAAA+CGG - chr4_1:48735645-48735664 None:intergenic 45.0%
GTTCATTCTGTTTGCAGCTC+TGG + chr4_1:48735740-48735759 Msa0552260:intron 45.0%
TTCTTGGCCACACAGAACTA+CGG + chr4_1:48735860-48735879 Msa0552260:CDS 45.0%
! TATGCAACCGTAGTTCTGTG+TGG - chr4_1:48735870-48735889 None:intergenic 45.0%
! CTTGCAAGTGCTATTGATGG+AGG - chr4_1:48735895-48735914 None:intergenic 45.0%
TTCAGCTGGCACTTCTTGAT+CGG + chr4_1:48735932-48735951 Msa0552260:CDS 45.0%
! GATCGGGAGTTTGATGATCT+AGG + chr4_1:48735949-48735968 Msa0552260:CDS 45.0%
ATCTCTTCCTCGGACATAGA+AGG - chr4_1:48736147-48736166 None:intergenic 45.0%
CGTCATACGGTAACATCAAG+TGG - chr4_1:48736709-48736728 None:intergenic 45.0%
TTCATTTAGTGTGGAGTGGC+AGG + chr4_1:48736774-48736793 Msa0552260:intron 45.0%
GCTCACTTGCAGTGTATGAT+TGG + chr4_1:48736883-48736902 Msa0552260:CDS 45.0%
AAACAGACCTGATGCAAGGA+GGG - chr4_1:48736944-48736963 None:intergenic 45.0%
! TGAGAAGAAATCTGGAGCGT+TGG + chr4_1:48737140-48737159 Msa0552260:three_prime_UTR 45.0%
!! GAGCGTTGGCATCTAACATA+GGG + chr4_1:48737154-48737173 Msa0552260:three_prime_UTR 45.0%
TGTAGATACCTGACCTTGCA+AGG + chr4_1:48737565-48737584 Msa0552260:three_prime_UTR 45.0%
AATTTCGGCAGTTACACCTG+AGG + chr4_1:48738213-48738232 Msa0552260:three_prime_UTR 45.0%
! ATGTAGCCTCGAAGCTTTGT+AGG + chr4_1:48738241-48738260 Msa0552260:three_prime_UTR 45.0%
GTTTCACCTACAAAGCTTCG+AGG - chr4_1:48738250-48738269 None:intergenic 45.0%
GTAGGTGAAACAGAGATTGC+CGG + chr4_1:48738259-48738278 Msa0552260:three_prime_UTR 45.0%
!! TTTATTCATATTATAAAATA+TGG - chr4_1:48738073-48738092 None:intergenic 5.0%
CATGGGCCCTAACTAAGAAG+TGG - chr4_1:48733374-48733393 None:intergenic 50.0%
AACGGTCACCTGAAGCTTTG+TGG + chr4_1:48733599-48733618 Msa0552260:five_prime_UTR 50.0%
GCTTGGCTGACATCATCATG+GGG - chr4_1:48733690-48733709 None:intergenic 50.0%
TGTCAGCCAAGCAAGGTACA+AGG + chr4_1:48733698-48733717 Msa0552260:five_prime_UTR 50.0%
GTCAGCCAAGCAAGGTACAA+GGG + chr4_1:48733699-48733718 Msa0552260:five_prime_UTR 50.0%
AGGTACCCTTGTACCTTGCT+TGG - chr4_1:48733707-48733726 None:intergenic 50.0%
TAGGCAGATTGATGGAGGCA+AGG - chr4_1:48733751-48733770 None:intergenic 50.0%
GCCTCCATCAATCTGCCTAA+CGG + chr4_1:48733752-48733771 Msa0552260:five_prime_UTR 50.0%
! TGTGCCGTTAGGCAGATTGA+TGG - chr4_1:48733759-48733778 None:intergenic 50.0%
! GCTTTGCAGGTTCGGGTTTA+CGG + chr4_1:48734641-48734660 Msa0552260:intron 50.0%
TGCCCACATACATGCTGTAC+AGG + chr4_1:48734829-48734848 Msa0552260:intron 50.0%
TGTTACCCGTGCGTTTCTTG+TGG + chr4_1:48735647-48735666 Msa0552260:CDS 50.0%
TCCTACCACAAGAAACGCAC+GGG - chr4_1:48735655-48735674 None:intergenic 50.0%
CTCCTACCACAAGAAACGCA+CGG - chr4_1:48735656-48735675 None:intergenic 50.0%
! GTAGTTCTGTGTGGCCAAGA+AGG - chr4_1:48735861-48735880 None:intergenic 50.0%
! CGGCTTGCAAGTGCTATTGA+TGG - chr4_1:48735898-48735917 None:intergenic 50.0%
TCAATAGCACTTGCAAGCCG+AGG + chr4_1:48735898-48735917 Msa0552260:CDS 50.0%
CAATAGCACTTGCAAGCCGA+GGG + chr4_1:48735899-48735918 Msa0552260:CDS 50.0%
TCAGCTGGCACTTCTTGATC+GGG + chr4_1:48735933-48735952 Msa0552260:CDS 50.0%
TACTGCACCTTCTATGTCCG+AGG + chr4_1:48736137-48736156 Msa0552260:CDS 50.0%
TCGTTTGTGGCAGAAGACAC+AGG + chr4_1:48736817-48736836 Msa0552260:intron 50.0%
GCAAGTGAGCTCATCATCAG+AGG - chr4_1:48736873-48736892 None:intergenic 50.0%
GAAACAGACCTGATGCAAGG+AGG - chr4_1:48736945-48736964 None:intergenic 50.0%
!! GGAGCGTTGGCATCTAACAT+AGG + chr4_1:48737153-48737172 Msa0552260:three_prime_UTR 50.0%
! AGGCTAGTTGCATTGATCCC+TGG + chr4_1:48737839-48737858 Msa0552260:three_prime_UTR 50.0%
CGAGGCTACATACAATCCTC+AGG - chr4_1:48738232-48738251 None:intergenic 50.0%
GCCGTTAGGCAGATTGATGG+AGG - chr4_1:48733756-48733775 None:intergenic 55.0%
CTTCATCATCGTACCCCTCC+TGG + chr4_1:48733877-48733896 Msa0552260:intron 55.0%
ACCCGTGCGTTTCTTGTGGT+AGG + chr4_1:48735651-48735670 Msa0552260:intron 55.0%
CGTGCGTTTCTTGTGGTAGG+AGG + chr4_1:48735654-48735673 Msa0552260:intron 55.0%
! TTGCAGCTCTGGCTAGTGCT+TGG + chr4_1:48735751-48735770 Msa0552260:intron 55.0%
! TAGCTTGCCCTCCTTGCATC+AGG + chr4_1:48736934-48736953 Msa0552260:CDS 55.0%
! GTTGCATTGATCCCTGGCTG+CGG + chr4_1:48737845-48737864 Msa0552260:three_prime_UTR 55.0%
CTGCGGCAACAAGGGATTTG+CGG + chr4_1:48737862-48737881 Msa0552260:three_prime_UTR 55.0%
GGCTGCTGCTGCATGAGCTT+GGG - chr4_1:48735833-48735852 None:intergenic 60.0%
TGGCTGCTGCTGCATGAGCT+TGG - chr4_1:48735834-48735853 None:intergenic 60.0%
TGTGTGGCCAAGAAGGCCAC+TGG - chr4_1:48735854-48735873 None:intergenic 60.0%
! GCTGAAGTCTGAGACGCCCT+CGG - chr4_1:48735918-48735937 None:intergenic 60.0%
! AGGGCGTCTCAGACTTCAGC+TGG + chr4_1:48735918-48735937 Msa0552260:CDS 60.0%
GGCACACACCTTGCAAGGTC+AGG - chr4_1:48737576-48737595 None:intergenic 60.0%
ATCCCTGGCTGCGGCAACAA+GGG + chr4_1:48737854-48737873 Msa0552260:three_prime_UTR 60.0%
ATCCCTTGTTGCCGCAGCCA+GGG - chr4_1:48737859-48737878 None:intergenic 60.0%
AATCCCTTGTTGCCGCAGCC+AGG - chr4_1:48737860-48737879 None:intergenic 60.0%
GCTCATGCAGCAGCAGCCAG+TGG + chr4_1:48735835-48735854 Msa0552260:CDS 65.0%
GCAGCAGCCAGTGGCCTTCT+TGG + chr4_1:48735844-48735863 Msa0552260:CDS 65.0%
! GGGGAGGCACACACCTTGCA+AGG - chr4_1:48737581-48737600 None:intergenic 65.0%
GATCCCTGGCTGCGGCAACA+AGG + chr4_1:48737853-48737872 Msa0552260:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 48733271 48738343 48733271 ID=Msa0552260;Name=Msa0552260
chr4_1 mRNA 48733271 48738343 48733271 ID=Msa0552260-mRNA-1;Parent=Msa0552260;Name=Msa0552260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=684|1|1|1|0.6|0.5|6|1354|191
chr4_1 exon 48733271 48733788 48733271 ID=Msa0552260-mRNA-1:exon:13399;Parent=Msa0552260-mRNA-1
chr4_1 exon 48734851 48734969 48734851 ID=Msa0552260-mRNA-1:exon:13400;Parent=Msa0552260-mRNA-1
chr4_1 exon 48735535 48735668 48735535 ID=Msa0552260-mRNA-1:exon:13401;Parent=Msa0552260-mRNA-1
chr4_1 exon 48735757 48735970 48735757 ID=Msa0552260-mRNA-1:exon:13402;Parent=Msa0552260-mRNA-1
chr4_1 exon 48736097 48736211 48736097 ID=Msa0552260-mRNA-1:exon:13403;Parent=Msa0552260-mRNA-1
chr4_1 exon 48736830 48738343 48736830 ID=Msa0552260-mRNA-1:exon:13404;Parent=Msa0552260-mRNA-1
chr4_1 five_prime_UTR 48733271 48733788 48733271 ID=Msa0552260-mRNA-1:five_prime_utr;Parent=Msa0552260-mRNA-1
chr4_1 five_prime_UTR 48734851 48734969 48734851 ID=Msa0552260-mRNA-1:five_prime_utr;Parent=Msa0552260-mRNA-1
chr4_1 five_prime_UTR 48735535 48735581 48735535 ID=Msa0552260-mRNA-1:five_prime_utr;Parent=Msa0552260-mRNA-1
chr4_1 CDS 48735582 48735668 48735582 ID=Msa0552260-mRNA-1:cds;Parent=Msa0552260-mRNA-1
chr4_1 CDS 48735757 48735970 48735757 ID=Msa0552260-mRNA-1:cds;Parent=Msa0552260-mRNA-1
chr4_1 CDS 48736097 48736211 48736097 ID=Msa0552260-mRNA-1:cds;Parent=Msa0552260-mRNA-1
chr4_1 CDS 48736830 48736989 48736830 ID=Msa0552260-mRNA-1:cds;Parent=Msa0552260-mRNA-1
chr4_1 three_prime_UTR 48736990 48738343 48736990 ID=Msa0552260-mRNA-1:three_prime_utr;Parent=Msa0552260-mRNA-1
Gene Sequence

>Msa0552260

ATGGCCCGTGAGTCGTGTTTGAAGACACTTGAAGGGCACATTTCAAGTGTGTTAACAGCACCGTTTGTTACCCGTGCGTTTCTTGTGCTCTGGCTAGTGCTTGGTGTTTTCTTGATGGCTACAATGCTAAGGATGTATGCAACATGTCAACAGCTTCAAGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGCCACACAGAACTACGGTTGCATATGCCTCCATCAATAGCACTTGCAAGCCGAGGGCGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCGGATAATGTTTCTACTGCACCTTCTATGTCCGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCCCAAAAAAGACACAGGATAATTCAAATGCGGTTGGAAACTCAAAAGCCTCTGATGATGAGCTCACTTGCAGTGTATGATTGGAGCAAGTTAATGTTGGAGATGTACTTCGTAGCTTGCCCTCCTTGCATCAGGTCTGTTTCATTGCTTAGAGTTGTAACTTTTTAA
Protein sequence

>Msa0552260

MARESCLKTLEGHISSVLTAPFVTRAFLVLWLVLGVFLMATMLRMYATCQQLQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMSEEEINALPVHKYKVSGPQKRHRIIQMRLETQKPLMMSSLAVYDWSKLMLEMYFVACPPCIRSVSLLRVVTF*