Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553060 | XP_013456572.1 | 98.133 | 375 | 7 | 0 | 1 | 375 | 1 | 375 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553060 | A0A072UNG4 | 98.133 | 375 | 7 | 0 | 1 | 375 | 1 | 375 | 0.0 | 733 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184020 | Msa0553060 | 0.805826 | 1.106775e-49 | -8.615850e-47 |
| Msa0553060 | Msa0616020 | 0.806983 | 6.310064e-50 | -8.615850e-47 |
| Msa0553060 | Msa0921330 | 0.811798 | 5.846438e-51 | -8.615850e-47 |
| Msa0553060 | Msa1046300 | 0.808766 | 2.636286e-50 | -8.615850e-47 |
| Msa0553060 | Msa1187290 | 0.807754 | 4.331193e-50 | -8.615850e-47 |
| Msa0553060 | Msa1453080 | 0.840609 | 7.841908e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553060 | MtrunA17_Chr4g0038631 | 98.133 | 375 | 7 | 0 | 1 | 375 | 1 | 375 | 0.0 | 733 |
| Msa0553060 | MtrunA17_Chr3g0145431 | 73.842 | 367 | 85 | 5 | 7 | 370 | 4 | 362 | 0.0 | 537 |
| Msa0553060 | MtrunA17_Chr7g0274121 | 24.927 | 341 | 235 | 9 | 13 | 348 | 4 | 328 | 2.22e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0553060 | AT4G38810.2 | 68.889 | 360 | 106 | 4 | 19 | 374 | 13 | 370 | 2.63e-175 | 493 |
| Msa0553060 | AT4G38810.1 | 63.740 | 262 | 89 | 4 | 117 | 374 | 1 | 260 | 3.54e-112 | 328 |
| Msa0553060 | AT5G28830.1 | 24.731 | 279 | 192 | 6 | 84 | 353 | 54 | 323 | 2.11e-13 | 70.9 |
Find 90 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAATATGGAAACTATTTC+TGG | 0.176008 | 4_1:+49839086 | None:intergenic |
| GAAAATATTAACTGAAATAT+TGG | 0.195437 | 4_1:-49838089 | Msa0553060:CDS |
| TCTAGATGGTTCTAATATTA+TGG | 0.215698 | 4_1:-49842469 | Msa0553060:CDS |
| CTGCTGCTTTACCTCCATTT+GGG | 0.245451 | 4_1:-49838312 | Msa0553060:CDS |
| CAACCTGCTGTTTCTGATAT+TGG | 0.268714 | 4_1:-49842348 | Msa0553060:CDS |
| TTCCTCCTACATCTGATTCT+TGG | 0.281053 | 4_1:-49838986 | Msa0553060:CDS |
| GTTCATCTTCCCTTTATTGA+TGG | 0.281132 | 4_1:+49842793 | None:intergenic |
| AAAATATTAACTGAAATATT+GGG | 0.282504 | 4_1:-49838088 | Msa0553060:CDS |
| TATCCAACTCTTGAAACTTA+TGG | 0.283682 | 4_1:+49842406 | None:intergenic |
| TGATTCAATTTGAGAGAATA+TGG | 0.286182 | 4_1:+49839073 | None:intergenic |
| TCTGCTGCTTTACCTCCATT+TGG | 0.293406 | 4_1:-49838313 | Msa0553060:CDS |
| TTATTCTCTTAATTATATAA+TGG | 0.297482 | 4_1:-49837731 | Msa0553060:three_prime_UTR |
| CTTGTCTAATTCAAACTTGT+TGG | 0.302176 | 4_1:+49838533 | None:intergenic |
| GAATTTGAAGCAACTGCTAT+AGG | 0.336697 | 4_1:+49838037 | None:intergenic |
| GAGACTCAGTTGCCCAAGTT+TGG | 0.345432 | 4_1:-49837793 | Msa0553060:three_prime_UTR |
| TCCTCCTACATCTGATTCTT+GGG | 0.347440 | 4_1:-49838985 | Msa0553060:intron |
| ATTGTGATACTTCGCATTGA+TGG | 0.352155 | 4_1:-49839149 | Msa0553060:CDS |
| TTCACAATGGAGAGTGGTTC+AGG | 0.353157 | 4_1:-49842534 | Msa0553060:exon |
| ACAAGCACATCCATCAATAA+AGG | 0.355858 | 4_1:-49842803 | Msa0553060:five_prime_UTR |
| ATGCAGATGGATAAGGTAAT+TGG | 0.359367 | 4_1:-49838172 | Msa0553060:intron |
| CATAGTGAAAGCACCTTTGA+TGG | 0.361301 | 4_1:-49838579 | Msa0553060:CDS |
| TCTAATATTATGGAGTTAGT+TGG | 0.369024 | 4_1:-49842459 | Msa0553060:CDS |
| GCTCTTGGTTTGCCTGCTAA+AGG | 0.387600 | 4_1:-49842321 | Msa0553060:CDS |
| TCTGATATTGGTGCTGCTCT+TGG | 0.389372 | 4_1:-49842336 | Msa0553060:CDS |
| ATTCTGTTGGGCATGGCTGC+TGG | 0.394761 | 4_1:-49839188 | Msa0553060:CDS |
| ACAAATAAACAAGCCAAACT+TGG | 0.397731 | 4_1:+49837780 | None:intergenic |
| ACTATTTCTGGTTCATAACT+TGG | 0.407354 | 4_1:+49839098 | None:intergenic |
| ATGTGGAAGCTTTGAGGCTA+GGG | 0.407864 | 4_1:-49837816 | Msa0553060:three_prime_UTR |
| ATGAGTTATGCTGTTTCAGC+AGG | 0.408229 | 4_1:+49837965 | None:intergenic |
| TTTGGTTATGCAGATGGATA+AGG | 0.427485 | 4_1:-49838179 | Msa0553060:intron |
| GAGCGTGGCGAATCGTCTTA+AGG | 0.430707 | 4_1:-49838622 | Msa0553060:CDS |
| AGTTTGGCTTGTTTATTTGT+TGG | 0.442116 | 4_1:-49837777 | Msa0553060:three_prime_UTR |
| GAATAGATGTGATCAGAATC+AGG | 0.442822 | 4_1:+49842291 | None:intergenic |
| ACCTCTTCTATTGCCCCAAA+TGG | 0.452749 | 4_1:+49838298 | None:intergenic |
| CTCAGACATTCTGTTGGGCA+TGG | 0.454330 | 4_1:-49839195 | Msa0553060:CDS |
| GGATTACCTACGCGTGGCGC+TGG | 0.455637 | 4_1:-49838350 | Msa0553060:CDS |
| AGCAAACTCAATGTTGATCA+AGG | 0.463524 | 4_1:-49839011 | Msa0553060:CDS |
| TCAATGCGAAGTATCACAAT+AGG | 0.470277 | 4_1:+49839152 | None:intergenic |
| CAAGCACATCCATCAATAAA+GGG | 0.472840 | 4_1:-49842802 | Msa0553060:five_prime_UTR |
| CCAGCACTGCTTTCTGAACA+TGG | 0.482659 | 4_1:-49838708 | Msa0553060:CDS |
| GAACCATAAGTTTCAAGAGT+TGG | 0.484496 | 4_1:-49842409 | Msa0553060:CDS |
| TGCTGCTTTACCTCCATTTG+GGG | 0.485997 | 4_1:-49838311 | Msa0553060:CDS |
| TATGCTGTTTCAGCAGGGGT+TGG | 0.486278 | 4_1:+49837971 | None:intergenic |
| TCAGGATTAGTGCCTTTAGC+AGG | 0.491782 | 4_1:+49842309 | None:intergenic |
| GTTGGTGACATGAAAAGAGC+AGG | 0.499152 | 4_1:-49837759 | Msa0553060:three_prime_UTR |
| AGTATTATGTTGCAGTTGGA+AGG | 0.505807 | 4_1:-49838064 | Msa0553060:CDS |
| AATGTGGAAGCTTTGAGGCT+AGG | 0.506677 | 4_1:-49837817 | Msa0553060:three_prime_UTR |
| TCTAAGTATGTATATGATGA+TGG | 0.508582 | 4_1:-49837928 | Msa0553060:three_prime_UTR |
| GTTCTCTCAGACATTCTGTT+GGG | 0.508617 | 4_1:-49839200 | Msa0553060:CDS |
| CCTACGCGTGGCGCTGGACA+CGG | 0.510860 | 4_1:-49838344 | Msa0553060:CDS |
| GGGGAGTATTATGTTGCAGT+TGG | 0.521383 | 4_1:-49838068 | Msa0553060:CDS |
| CCATGTTCAGAAAGCAGTGC+TGG | 0.523999 | 4_1:+49838708 | None:intergenic |
| GGTTCTCTCAGACATTCTGT+TGG | 0.534972 | 4_1:-49839201 | Msa0553060:CDS |
| TCACTATGAGCAACTATGAC+AGG | 0.535403 | 4_1:+49838594 | None:intergenic |
| AACGCAGTAGAGGTTCTAGA+TGG | 0.535561 | 4_1:-49842483 | Msa0553060:CDS |
| GATCTTCTCGAGTTTCTTAG+CGG | 0.539300 | 4_1:-49839122 | Msa0553060:CDS |
| AGTCAAATGTGGAAGCTTTG+AGG | 0.542135 | 4_1:-49837822 | Msa0553060:three_prime_UTR |
| GAAAGCACCTTTGATGGAAC+TGG | 0.550777 | 4_1:-49838573 | Msa0553060:CDS |
| TCTGTAGTGCATGAGCCTCT+AGG | 0.553401 | 4_1:-49838016 | Msa0553060:CDS |
| CAAATAAACAAGCCAAACTT+GGG | 0.554197 | 4_1:+49837781 | None:intergenic |
| CTTAACACCAGTTCCATCAA+AGG | 0.563267 | 4_1:+49838566 | None:intergenic |
| AAATATTAACTGAAATATTG+GGG | 0.575923 | 4_1:-49838087 | Msa0553060:CDS |
| AATTGGTGAAGTGTTTAAGA+TGG | 0.579084 | 4_1:-49838155 | Msa0553060:CDS |
| TCTTCTATTGCCCCAAATGG+AGG | 0.580699 | 4_1:+49838301 | None:intergenic |
| CAACAAGTTTGAATTAGACA+AGG | 0.580853 | 4_1:-49838532 | Msa0553060:intron |
| TGGCTGCAGAAGTGTAGAAG+AGG | 0.585644 | 4_1:+49837991 | None:intergenic |
| GAGTGCAGATGATGCAAAGT+TGG | 0.589671 | 4_1:-49838131 | Msa0553060:CDS |
| CCGTGTCCAGCGCCACGCGT+AGG | 0.593030 | 4_1:+49838344 | None:intergenic |
| GCAAACTCAATGTTGATCAA+GGG | 0.593847 | 4_1:-49839010 | Msa0553060:CDS |
| AATGGAGGTAAAGCAGCAGA+TGG | 0.595006 | 4_1:+49838316 | None:intergenic |
| GCTACCCAAGAATCAGATGT+AGG | 0.602099 | 4_1:+49838981 | None:intergenic |
| TCCATTTGGGGCAATAGAAG+AGG | 0.604885 | 4_1:-49838299 | Msa0553060:intron |
| TGAGTTATGCTGTTTCAGCA+GGG | 0.605860 | 4_1:+49837966 | None:intergenic |
| TTCTGATCACATCTATTCTG+AGG | 0.622184 | 4_1:-49842286 | Msa0553060:intron |
| GCACCAATATCAGAAACAGC+AGG | 0.624366 | 4_1:+49842345 | None:intergenic |
| GAGTTATGCTGTTTCAGCAG+GGG | 0.632609 | 4_1:+49837967 | None:intergenic |
| GTAGGTTATCAGCAACATTG+TGG | 0.646541 | 4_1:-49838733 | Msa0553060:intron |
| ACAGGATTCACAATGGAGAG+TGG | 0.646920 | 4_1:-49842540 | Msa0553060:exon |
| TGGTGGTGGAAACGCAGTAG+AGG | 0.649162 | 4_1:-49842493 | Msa0553060:CDS |
| ATCGAAGGATTACCTACGCG+TGG | 0.650320 | 4_1:-49838356 | Msa0553060:CDS |
| GAGCAAGACTGAGTTCAAAG+AGG | 0.651775 | 4_1:-49839222 | Msa0553060:CDS |
| ACCCAAGAATCAGATGTAGG+AGG | 0.654082 | 4_1:+49838984 | None:intergenic |
| CAGCACTGCTTTCTGAACAT+GGG | 0.657052 | 4_1:-49838707 | Msa0553060:CDS |
| GAGTTGGATAGAGATAAAGA+TGG | 0.666648 | 4_1:-49842393 | Msa0553060:CDS |
| GTATTGAATGAATTCACACA+TGG | 0.667218 | 4_1:-49839260 | Msa0553060:CDS |
| TAAGAAAGTAGCATTGAGCG+TGG | 0.673122 | 4_1:-49838637 | Msa0553060:CDS |
| TGTGGAAGCTTTGAGGCTAG+GGG | 0.680298 | 4_1:-49837815 | Msa0553060:three_prime_UTR |
| GTGAATCACAGGATTCACAA+TGG | 0.694044 | 4_1:-49842547 | Msa0553060:exon |
| AGTGTAGAAGAGGAGCCTAG+AGG | 0.702434 | 4_1:+49838001 | None:intergenic |
| ACGAGTTAAAGTGATCAATG+AGG | 0.727587 | 4_1:+49842604 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAGAATAAGAAATAAA+AGG | + | chr4_1:49838800-49838819 | None:intergenic | 10.0% |
| !! | AAAATATTAACTGAAATATT+GGG | - | chr4_1:49842432-49842451 | Msa0553060:CDS | 10.0% |
| !! | TTATTCTCTTAATTATATAA+TGG | - | chr4_1:49842789-49842808 | Msa0553060:five_prime_UTR | 10.0% |
| !!! | TAATTTTCTCAAATTATTGA+TGG | + | chr4_1:49838476-49838495 | None:intergenic | 15.0% |
| !! | ATACAGTAAATTACTATAAT+CGG | - | chr4_1:49839632-49839651 | Msa0553060:intron | 15.0% |
| !! | TGTGTATATTATAAACAATT+TGG | - | chr4_1:49839847-49839866 | Msa0553060:intron | 15.0% |
| !! | TATATTATAAACAATTTGGT+CGG | - | chr4_1:49839851-49839870 | Msa0553060:intron | 15.0% |
| !!! | TATTTTGATACTATCAAATA+TGG | + | chr4_1:49839901-49839920 | None:intergenic | 15.0% |
| !!! | ATATTTGATAGTATCAAAAT+AGG | - | chr4_1:49839900-49839919 | Msa0553060:intron | 15.0% |
| !! | TTATTCAACCATAAATTATA+TGG | - | chr4_1:49840431-49840450 | Msa0553060:intron | 15.0% |
| !!! | TTTAAAATATCAATTAGAGT+TGG | + | chr4_1:49840745-49840764 | None:intergenic | 15.0% |
| !! | AATTAACATATTAACTCTTT+AGG | - | chr4_1:49841238-49841257 | Msa0553060:intron | 15.0% |
| !! | AAAATTAGACAGATATTAAA+TGG | - | chr4_1:49841602-49841621 | Msa0553060:intron | 15.0% |
| !!! | ATTTTTCCATTTTTATCTTT+AGG | + | chr4_1:49842144-49842163 | None:intergenic | 15.0% |
| !! | GAAAATATTAACTGAAATAT+TGG | - | chr4_1:49842431-49842450 | Msa0553060:CDS | 15.0% |
| !! | AAATATTAACTGAAATATTG+GGG | - | chr4_1:49842433-49842452 | Msa0553060:CDS | 15.0% |
| !!! | AAATATTTTATTATAGTCAC+TGG | + | chr4_1:49842631-49842650 | None:intergenic | 15.0% |
| !!! | AAACCAAACTGAATATTTTT+AGG | - | chr4_1:49837793-49837812 | Msa0553060:three_prime_UTR | 20.0% |
| !! | TAAGAATAAGAAATAAAAGG+TGG | + | chr4_1:49838797-49838816 | None:intergenic | 20.0% |
| !! | AATAACAAAACAACAAACAT+TGG | + | chr4_1:49839704-49839723 | None:intergenic | 20.0% |
| !!! | TAAGTGTATGTTTTGATTTA+CGG | + | chr4_1:49839964-49839983 | None:intergenic | 20.0% |
| !! | TATATATTTGGTACATAGTT+AGG | + | chr4_1:49840563-49840582 | None:intergenic | 20.0% |
| !! | TTATTGCTCGTTTATATATT+TGG | + | chr4_1:49840575-49840594 | None:intergenic | 20.0% |
| !! | AAAACGTAGTATGTTAAATT+TGG | + | chr4_1:49840908-49840927 | None:intergenic | 20.0% |
| !!! | TTTTTCCTAGTATGAATTAT+TGG | + | chr4_1:49841564-49841583 | None:intergenic | 20.0% |
| !!! | ATGGTTTCAATTTTTTACAT+GGG | - | chr4_1:49841661-49841680 | Msa0553060:intron | 20.0% |
| !! | TATAGAAAAAGTTTAGAAAC+AGG | + | chr4_1:49841705-49841724 | None:intergenic | 20.0% |
| !!! | CTATATACCAATTTTTTTTG+TGG | - | chr4_1:49841748-49841767 | Msa0553060:intron | 20.0% |
| !! | ACCAATTAATTAATCTATGA+TGG | - | chr4_1:49842084-49842103 | Msa0553060:intron | 20.0% |
| !! | CCAATTAATTAATCTATGAT+GGG | - | chr4_1:49842085-49842104 | Msa0553060:intron | 20.0% |
| !! | TAAAAATGGAAAAATATCGA+AGG | - | chr4_1:49842149-49842168 | Msa0553060:intron | 20.0% |
| ! | ACTCCTAAAAATATTCAGTT+TGG | + | chr4_1:49837799-49837818 | None:intergenic | 25.0% |
| !!! | TCTAGATGGTTCTAATATTA+TGG | - | chr4_1:49838051-49838070 | Msa0553060:CDS | 25.0% |
| ! | TCTAATATTATGGAGTTAGT+TGG | - | chr4_1:49838061-49838080 | Msa0553060:CDS | 25.0% |
| ! | TTCATAGTATTAAGAACTCA+TGG | - | chr4_1:49838582-49838601 | Msa0553060:CDS | 25.0% |
| ! | GTTGAATGAAAAAAAACCAT+TGG | + | chr4_1:49838763-49838782 | None:intergenic | 25.0% |
| ! | AATAAGAAATAAAAGGTGGT+GGG | + | chr4_1:49838793-49838812 | None:intergenic | 25.0% |
| ! | TTTCTAATACTCTTATCATG+TGG | - | chr4_1:49839597-49839616 | Msa0553060:intron | 25.0% |
| ! | ATATATTAGAGCATGATCAT+AGG | + | chr4_1:49840266-49840285 | None:intergenic | 25.0% |
| ! | GATCATGCTCTAATATATAA+TGG | - | chr4_1:49840268-49840287 | Msa0553060:intron | 25.0% |
| ! | TATGGTTGAATAATAATAGC+AGG | + | chr4_1:49840424-49840443 | None:intergenic | 25.0% |
| !!! | TAAAGGAGATTTTTTGTGTA+TGG | - | chr4_1:49840508-49840527 | Msa0553060:intron | 25.0% |
| !!! | TTTTTTATCTGATGACACTA+AGG | + | chr4_1:49840617-49840636 | None:intergenic | 25.0% |
| ! | ATATGCACAATATATAGTTG+AGG | - | chr4_1:49840786-49840805 | Msa0553060:intron | 25.0% |
| ! | TATGCACAATATATAGTTGA+GGG | - | chr4_1:49840787-49840806 | Msa0553060:intron | 25.0% |
| ! | ACAAAATCATAAACGACTTA+TGG | - | chr4_1:49840959-49840978 | Msa0553060:intron | 25.0% |
| !! | ATTCAAATTGACTTAATGTG+TGG | + | chr4_1:49841054-49841073 | None:intergenic | 25.0% |
| ! | TGATTCAATTTGAGAGAATA+TGG | + | chr4_1:49841450-49841469 | None:intergenic | 25.0% |
| !!! | CATGGTTTCAATTTTTTACA+TGG | - | chr4_1:49841660-49841679 | Msa0553060:intron | 25.0% |
| ! | AAAAATATCTCTTGAGAAAC+AGG | + | chr4_1:49841854-49841873 | None:intergenic | 25.0% |
| !! | TGTTTCTCAAGAGATATTTT+TGG | - | chr4_1:49841853-49841872 | Msa0553060:intron | 25.0% |
| ! | CCCATCATAGATTAATTAAT+TGG | + | chr4_1:49842088-49842107 | None:intergenic | 25.0% |
| ! | AATATTTGTGCATGCATATT+TGG | - | chr4_1:49842323-49842342 | Msa0553060:CDS | 25.0% |
| ! | TCTAAGTATGTATATGATGA+TGG | - | chr4_1:49842592-49842611 | Msa0553060:five_prime_UTR | 25.0% |
| AGAGTAAGAAAGAAAAAGAG+AGG | - | chr4_1:49837951-49837970 | Msa0553060:exon | 30.0% | |
| TATCCAACTCTTGAAACTTA+TGG | + | chr4_1:49838117-49838136 | None:intergenic | 30.0% | |
| TGCCATAGATTGTTTGAATT+TGG | - | chr4_1:49838338-49838357 | Msa0553060:CDS | 30.0% | |
| TGCCAAATTCAAACAATCTA+TGG | + | chr4_1:49838343-49838362 | None:intergenic | 30.0% | |
| AAATAAGAACATGTGAAGCA+CGG | - | chr4_1:49838416-49838435 | Msa0553060:intron | 30.0% | |
| TTCAGTGTAATTATACGTGT+CGG | - | chr4_1:49838501-49838520 | Msa0553060:intron | 30.0% | |
| TTCTTGAATTAGACATGTTC+CGG | + | chr4_1:49838552-49838571 | None:intergenic | 30.0% | |
| GTTCTTAATACTATGAAGCA+TGG | + | chr4_1:49838579-49838598 | None:intergenic | 30.0% | |
| !! | ATGTTGATGACCATTGTAAA+TGG | + | chr4_1:49838650-49838669 | None:intergenic | 30.0% |
| !! | TTTAAAAAGTGGGTGTTGAA+GGG | + | chr4_1:49838679-49838698 | None:intergenic | 30.0% |
| !! | ATTTAAAAAGTGGGTGTTGA+AGG | + | chr4_1:49838680-49838699 | None:intergenic | 30.0% |
| GTGTTGGGAATTTAAAAAGT+GGG | + | chr4_1:49838689-49838708 | None:intergenic | 30.0% | |
| ! | AGTGTTGGGAATTTAAAAAG+TGG | + | chr4_1:49838690-49838709 | None:intergenic | 30.0% |
| ATGAAAAAAAACCATTGGAG+AGG | + | chr4_1:49838758-49838777 | None:intergenic | 30.0% | |
| ATAAGAAATAAAAGGTGGTG+GGG | + | chr4_1:49838792-49838811 | None:intergenic | 30.0% | |
| GAATAAGAAATAAAAGGTGG+TGG | + | chr4_1:49838794-49838813 | None:intergenic | 30.0% | |
| ! | ATAGTCTTACTGAGAAGATA+AGG | - | chr4_1:49839554-49839573 | Msa0553060:intron | 30.0% |
| ATGGTATGGAGAAAAGAAAA+TGG | + | chr4_1:49840192-49840211 | None:intergenic | 30.0% | |
| ! | TTTTCTCCATACCATATACA+AGG | - | chr4_1:49840197-49840216 | Msa0553060:intron | 30.0% |
| !!! | GAATTTTTTGTTGTTGTGGT+TGG | - | chr4_1:49840232-49840251 | Msa0553060:intron | 30.0% |
| AACCATAAATTATATGGTCC+TGG | - | chr4_1:49840437-49840456 | Msa0553060:intron | 30.0% | |
| AACCAGGACCATATAATTTA+TGG | + | chr4_1:49840442-49840461 | None:intergenic | 30.0% | |
| ACGTAGTATGTTAAATTTGG+TGG | + | chr4_1:49840905-49840924 | None:intergenic | 30.0% | |
| TCATAAACGACTTATGGTAT+AGG | - | chr4_1:49840965-49840984 | Msa0553060:intron | 30.0% | |
| GACATTATATTGAACCAATG+AGG | - | chr4_1:49841187-49841206 | Msa0553060:intron | 30.0% | |
| GTATTGAATGAATTCACACA+TGG | - | chr4_1:49841260-49841279 | Msa0553060:intron | 30.0% | |
| !! | ACTATTTCTGGTTCATAACT+TGG | + | chr4_1:49841425-49841444 | None:intergenic | 30.0% |
| GAGAATATGGAAACTATTTC+TGG | + | chr4_1:49841437-49841456 | None:intergenic | 30.0% | |
| ! | AGATCATGAAGAGATTTTTG+AGG | + | chr4_1:49841473-49841492 | None:intergenic | 30.0% |
| AGACAGATATTAAATGGAAG+TGG | - | chr4_1:49841608-49841627 | Msa0553060:intron | 30.0% | |
| GAAACAGGACAAAATGAAAT+TGG | + | chr4_1:49841690-49841709 | None:intergenic | 30.0% | |
| GATGAAGCCACAAAAAAAAT+TGG | + | chr4_1:49841758-49841777 | None:intergenic | 30.0% | |
| !!! | TTCTCAAGAGATATTTTTGG+AGG | - | chr4_1:49841856-49841875 | Msa0553060:intron | 30.0% |
| CTTGTCTAATTCAAACTTGT+TGG | + | chr4_1:49841990-49842009 | None:intergenic | 30.0% | |
| CAACAAGTTTGAATTAGACA+AGG | - | chr4_1:49841988-49842007 | Msa0553060:intron | 30.0% | |
| AAGTTTGAATTAGACAAGGT+TGG | - | chr4_1:49841992-49842011 | Msa0553060:intron | 30.0% | |
| !!! | AGGTTGGTCTATTTTCATTT+TGG | - | chr4_1:49842008-49842027 | Msa0553060:intron | 30.0% |
| ACCTTGCCTAAAGATAAAAA+TGG | - | chr4_1:49842135-49842154 | Msa0553060:intron | 30.0% | |
| !! | TCCATTTTTATCTTTAGGCA+AGG | + | chr4_1:49842139-49842158 | None:intergenic | 30.0% |
| ! | AATTGGTGAAGTGTTTAAGA+TGG | - | chr4_1:49842365-49842384 | Msa0553060:CDS | 30.0% |
| CAAATAAACAAGCCAAACTT+GGG | + | chr4_1:49842742-49842761 | None:intergenic | 30.0% | |
| ACAAATAAACAAGCCAAACT+TGG | + | chr4_1:49842743-49842762 | None:intergenic | 30.0% | |
| !! | AGTTTGGCTTGTTTATTTGT+TGG | - | chr4_1:49842743-49842762 | Msa0553060:five_prime_UTR | 30.0% |
| GTTCATCTTCCCTTTATTGA+TGG | + | chr4_1:49837730-49837749 | None:intergenic | 35.0% | |
| ACGAGTTAAAGTGATCAATG+AGG | + | chr4_1:49837919-49837938 | None:intergenic | 35.0% | |
| GAACCATAAGTTTCAAGAGT+TGG | - | chr4_1:49838111-49838130 | Msa0553060:CDS | 35.0% | |
| GAGTTGGATAGAGATAAAGA+TGG | - | chr4_1:49838127-49838146 | Msa0553060:CDS | 35.0% | |
| GAATAGATGTGATCAGAATC+AGG | + | chr4_1:49838232-49838251 | None:intergenic | 35.0% | |
| TTCTGATCACATCTATTCTG+AGG | - | chr4_1:49838234-49838253 | Msa0553060:intron | 35.0% | |
| CCATTGTAAATGGTCTAAGT+CGG | + | chr4_1:49838640-49838659 | None:intergenic | 35.0% | |
| TTAAGAGAGAGAAGATGATG+TGG | + | chr4_1:49838713-49838732 | None:intergenic | 35.0% | |
| TTCAACTTTAACCTCTCCAA+TGG | - | chr4_1:49838744-49838763 | Msa0553060:intron | 35.0% | |
| AAGCACATATGGACAAAGTT+TGG | + | chr4_1:49839085-49839104 | None:intergenic | 35.0% | |
| TGCAATTCGTGATGAACATT+TGG | - | chr4_1:49839118-49839137 | Msa0553060:CDS | 35.0% | |
| ! | TTTTTGCATGCCATGTGAAA+TGG | - | chr4_1:49839242-49839261 | Msa0553060:CDS | 35.0% |
| ! | TTTTTGCATGCCATGTGAAA+TGG | - | chr4_1:49839242-49839261 | Msa0553060:CDS | 35.0% |
| ! | TTTTTGCATGCCATGTGAAA+TGG | - | chr4_1:49839242-49839261 | Msa0553060:CDS | 35.0% |
| TCAGTAAGACTATGTGCAAT+GGG | + | chr4_1:49839547-49839566 | None:intergenic | 35.0% | |
| CTAATACTCTTATCATGTGG+TGG | - | chr4_1:49839600-49839619 | Msa0553060:intron | 35.0% | |
| ACTAGTACTATGTCTGTTTG+TGG | - | chr4_1:49839765-49839784 | Msa0553060:intron | 35.0% | |
| !! | CAAAATCACGGTTATTTTCC+AGG | - | chr4_1:49840029-49840048 | Msa0553060:intron | 35.0% |
| TTGAGAAAACTACGAAACCA+AGG | + | chr4_1:49840066-49840085 | None:intergenic | 35.0% | |
| ! | AGTTTTCTCAAACATTGCAG+TGG | - | chr4_1:49840075-49840094 | Msa0553060:intron | 35.0% |
| ATTCCTCCTTGTATATGGTA+TGG | + | chr4_1:49840206-49840225 | None:intergenic | 35.0% | |
| TAGTACTCAGTACTAAGACA+AGG | - | chr4_1:49840349-49840368 | Msa0553060:intron | 35.0% | |
| ATGCACACCAAAATCATAGT+AGG | - | chr4_1:49840705-49840724 | Msa0553060:intron | 35.0% | |
| ! | CTCTAGAAAGAGCTATCAAA+GGG | + | chr4_1:49840844-49840863 | None:intergenic | 35.0% |
| ! | ACTCTAGAAAGAGCTATCAA+AGG | + | chr4_1:49840845-49840864 | None:intergenic | 35.0% |
| ! | AATCACTCTCCTAAAAGTGT+TGG | + | chr4_1:49840876-49840895 | None:intergenic | 35.0% |
| ACAGATTCTTATCAGCACTA+AGG | + | chr4_1:49841152-49841171 | None:intergenic | 35.0% | |
| ! | GTCATTTCTTGTTTCCTCAT+TGG | + | chr4_1:49841204-49841223 | None:intergenic | 35.0% |
| ! | TCAATGCGAAGTATCACAAT+AGG | + | chr4_1:49841371-49841390 | None:intergenic | 35.0% |
| ATTGTGATACTTCGCATTGA+TGG | - | chr4_1:49841371-49841390 | Msa0553060:intron | 35.0% | |
| AGCAAACTCAATGTTGATCA+AGG | - | chr4_1:49841509-49841528 | Msa0553060:intron | 35.0% | |
| GCAAACTCAATGTTGATCAA+GGG | - | chr4_1:49841510-49841529 | Msa0553060:intron | 35.0% | |
| GGTAGCCAATAATTCATACT+AGG | - | chr4_1:49841556-49841575 | Msa0553060:intron | 35.0% | |
| TGCATATTTGGTTATGCAGA+TGG | - | chr4_1:49842335-49842354 | Msa0553060:CDS | 35.0% | |
| TTTGGTTATGCAGATGGATA+AGG | - | chr4_1:49842341-49842360 | Msa0553060:CDS | 35.0% | |
| ATGCAGATGGATAAGGTAAT+TGG | - | chr4_1:49842348-49842367 | Msa0553060:CDS | 35.0% | |
| AGTATTATGTTGCAGTTGGA+AGG | - | chr4_1:49842456-49842475 | Msa0553060:CDS | 35.0% | |
| ! | GAATTTGAAGCAACTGCTAT+AGG | + | chr4_1:49842486-49842505 | None:intergenic | 35.0% |
| GAAAAAGAGAGGTGAATCAC+AGG | - | chr4_1:49837962-49837981 | Msa0553060:exon | 40.0% | |
| GTGAATCACAGGATTCACAA+TGG | - | chr4_1:49837973-49837992 | Msa0553060:CDS | 40.0% | |
| GGTTCAGGTAAGAGAAAAAG+TGG | - | chr4_1:49838001-49838020 | Msa0553060:CDS | 40.0% | |
| TCAGGTAAGAGAAAAAGTGG+TGG | - | chr4_1:49838004-49838023 | Msa0553060:CDS | 40.0% | |
| !! | CAACCTGCTGTTTCTGATAT+TGG | - | chr4_1:49838172-49838191 | Msa0553060:intron | 40.0% |
| ! | GTAATTATACGTGTCGGTGT+CGG | - | chr4_1:49838507-49838526 | Msa0553060:intron | 40.0% |
| AATTAGACATGTTCCGGTGT+CGG | + | chr4_1:49838546-49838565 | None:intergenic | 40.0% | |
| CCGACTTAGACCATTTACAA+TGG | - | chr4_1:49838637-49838656 | Msa0553060:CDS | 40.0% | |
| ! | AGAAGATGATGTGGAGTGTT+GGG | + | chr4_1:49838704-49838723 | None:intergenic | 40.0% |
| CAGATCTAGTGAAGCACATA+TGG | + | chr4_1:49839096-49839115 | None:intergenic | 40.0% | |
| AACATTTGGATCACGCAACT+CGG | - | chr4_1:49839132-49839151 | Msa0553060:CDS | 40.0% | |
| ! | ACGCACATGATTTGCAAAAG+TGG | - | chr4_1:49839162-49839181 | Msa0553060:CDS | 40.0% |
| ! | CGCACATGATTTGCAAAAGT+GGG | - | chr4_1:49839163-49839182 | Msa0553060:CDS | 40.0% |
| AGTATGGCGAGCATACTATT+TGG | - | chr4_1:49839200-49839219 | Msa0553060:CDS | 40.0% | |
| GCATTCTGTGGCAGATTAAT+TGG | - | chr4_1:49839420-49839439 | Msa0553060:intron | 40.0% | |
| AACTGTGTTGAATGAACTGC+TGG | + | chr4_1:49839474-49839493 | None:intergenic | 40.0% | |
| GTTTAACCTGACAGTCAACA+GGG | + | chr4_1:49839521-49839540 | None:intergenic | 40.0% | |
| TGTTTAACCTGACAGTCAAC+AGG | + | chr4_1:49839522-49839541 | None:intergenic | 40.0% | |
| CTCAGTAAGACTATGTGCAA+TGG | + | chr4_1:49839548-49839567 | None:intergenic | 40.0% | |
| AGATAGATCATGATGCTTCC+AGG | + | chr4_1:49839799-49839818 | None:intergenic | 40.0% | |
| AAACAATTTGGTCGGTGATG+TGG | - | chr4_1:49839859-49839878 | Msa0553060:intron | 40.0% | |
| AACAATTTGGTCGGTGATGT+GGG | - | chr4_1:49839860-49839879 | Msa0553060:intron | 40.0% | |
| CCATAAACAGGGAAAACTCA+CGG | + | chr4_1:49840009-49840028 | None:intergenic | 40.0% | |
| ! | CCGTGATTTTGCCATAAACA+GGG | + | chr4_1:49840020-49840039 | None:intergenic | 40.0% |
| CCCTGTTTATGGCAAAATCA+CGG | - | chr4_1:49840017-49840036 | Msa0553060:intron | 40.0% | |
| ! | ACCGTGATTTTGCCATAAAC+AGG | + | chr4_1:49840021-49840040 | None:intergenic | 40.0% |
| TCCAGGTTCAAATAGAACCT+TGG | - | chr4_1:49840046-49840065 | Msa0553060:intron | 40.0% | |
| ACCAAGGTTCTATTTGAACC+TGG | + | chr4_1:49840050-49840069 | None:intergenic | 40.0% | |
| ! | AAACATTGCAGTGGAAGCAT+GGG | - | chr4_1:49840084-49840103 | Msa0553060:intron | 40.0% |
| TCTCCATACCATATACAAGG+AGG | - | chr4_1:49840200-49840219 | Msa0553060:intron | 40.0% | |
| ACCATATACAAGGAGGAATC+TGG | - | chr4_1:49840207-49840226 | Msa0553060:intron | 40.0% | |
| CCATATACAAGGAGGAATCT+GGG | - | chr4_1:49840208-49840227 | Msa0553060:intron | 40.0% | |
| CATATACAAGGAGGAATCTG+GGG | - | chr4_1:49840209-49840228 | Msa0553060:intron | 40.0% | |
| ATATACAAGGAGGAATCTGG+GGG | - | chr4_1:49840210-49840229 | Msa0553060:intron | 40.0% | |
| !!! | GGGGGAATTTTTTGTTGTTG+TGG | - | chr4_1:49840228-49840247 | Msa0553060:intron | 40.0% |
| AATTATATGGTCCTGGTTGC+TGG | - | chr4_1:49840444-49840463 | Msa0553060:intron | 40.0% | |
| TCCTAAGGCTATGTTTCTTG+CGG | - | chr4_1:49840473-49840492 | Msa0553060:intron | 40.0% | |
| ! | GCTCACACCTACTATGATTT+TGG | + | chr4_1:49840715-49840734 | None:intergenic | 40.0% |
| !! | TTGTGCTGACCAACACTTTT+AGG | - | chr4_1:49840864-49840883 | Msa0553060:intron | 40.0% |
| GACTTATGGTATAGGACACA+TGG | - | chr4_1:49840973-49840992 | Msa0553060:intron | 40.0% | |
| GTTCTCTCAGACATTCTGTT+GGG | - | chr4_1:49841320-49841339 | Msa0553060:intron | 40.0% | |
| GATCTTCTCGAGTTTCTTAG+CGG | - | chr4_1:49841398-49841417 | Msa0553060:intron | 40.0% | |
| TTCCTCCTACATCTGATTCT+TGG | - | chr4_1:49841534-49841553 | Msa0553060:intron | 40.0% | |
| TCCTCCTACATCTGATTCTT+GGG | - | chr4_1:49841535-49841554 | Msa0553060:intron | 40.0% | |
| TTTGCGCATCTAACACAACA+TGG | - | chr4_1:49841642-49841661 | Msa0553060:intron | 40.0% | |
| GGCTTCATCATTCTTTGTGT+AGG | - | chr4_1:49841769-49841788 | Msa0553060:intron | 40.0% | |
| GTAGGTTATCAGCAACATTG+TGG | - | chr4_1:49841787-49841806 | Msa0553060:intron | 40.0% | |
| ! | TAAGAAAGTAGCATTGAGCG+TGG | - | chr4_1:49841883-49841902 | Msa0553060:intron | 40.0% |
| TCACTATGAGCAACTATGAC+AGG | + | chr4_1:49841929-49841948 | None:intergenic | 40.0% | |
| !! | CATAGTGAAAGCACCTTTGA+TGG | - | chr4_1:49841941-49841960 | Msa0553060:intron | 40.0% |
| CTTAACACCAGTTCCATCAA+AGG | + | chr4_1:49841957-49841976 | None:intergenic | 40.0% | |
| !! | TGAGTTATGCTGTTTCAGCA+GGG | + | chr4_1:49842557-49842576 | None:intergenic | 40.0% |
| !! | ATGAGTTATGCTGTTTCAGC+AGG | + | chr4_1:49842558-49842577 | None:intergenic | 40.0% |
| ! | GTCTTTTGAGCAGTCAAATG+TGG | - | chr4_1:49842687-49842706 | Msa0553060:five_prime_UTR | 40.0% |
| AGTCAAATGTGGAAGCTTTG+AGG | - | chr4_1:49842698-49842717 | Msa0553060:five_prime_UTR | 40.0% | |
| ACAGGATTCACAATGGAGAG+TGG | - | chr4_1:49837980-49837999 | Msa0553060:CDS | 45.0% | |
| TTCACAATGGAGAGTGGTTC+AGG | - | chr4_1:49837986-49838005 | Msa0553060:CDS | 45.0% | |
| GGTAAGAGAAAAAGTGGTGG+TGG | - | chr4_1:49838007-49838026 | Msa0553060:CDS | 45.0% | |
| !! | AAGAGAAAAAGTGGTGGTGG+TGG | - | chr4_1:49838010-49838029 | Msa0553060:CDS | 45.0% |
| !! | AACGCAGTAGAGGTTCTAGA+TGG | - | chr4_1:49838037-49838056 | Msa0553060:CDS | 45.0% |
| GCACCAATATCAGAAACAGC+AGG | + | chr4_1:49838178-49838197 | None:intergenic | 45.0% | |
| !! | TCTGATATTGGTGCTGCTCT+TGG | - | chr4_1:49838184-49838203 | Msa0553060:intron | 45.0% |
| ! | TCAGGATTAGTGCCTTTAGC+AGG | + | chr4_1:49838214-49838233 | None:intergenic | 45.0% |
| ATACGTGTTGTATCCGACAC+CGG | - | chr4_1:49838530-49838549 | Msa0553060:intron | 45.0% | |
| GAGAAGATGATGTGGAGTGT+TGG | + | chr4_1:49838705-49838724 | None:intergenic | 45.0% | |
| TGCAAAAGTGGGTAACACCT+CGG | - | chr4_1:49839174-49839193 | Msa0553060:CDS | 45.0% | |
| ATAGTGCTCGCCATTTCACA+TGG | + | chr4_1:49839255-49839274 | None:intergenic | 45.0% | |
| GTGAAATGGCGAGCACTATT+TGG | - | chr4_1:49839256-49839275 | Msa0553060:CDS | 45.0% | |
| ATAGTGCTCGCCATTTCACA+TGG | + | chr4_1:49839255-49839274 | None:intergenic | 45.0% | |
| GTGAAATGGCGAGCACTATT+TGG | - | chr4_1:49839256-49839275 | Msa0553060:CDS | 45.0% | |
| AGAATGCTCGCCATTTCACA+TGG | + | chr4_1:49839361-49839380 | None:intergenic | 45.0% | |
| TGGACGAGAGAGAGGATTAA+CGG | + | chr4_1:49839454-49839473 | None:intergenic | 45.0% | |
| ! | CTATGTCTGTTTGTGGACTG+TGG | - | chr4_1:49839772-49839791 | Msa0553060:intron | 45.0% |
| ACATACACTTAGCGTCCGTT+TGG | - | chr4_1:49839973-49839992 | Msa0553060:intron | 45.0% | |
| ! | CCGTGAGTTTTCCCTGTTTA+TGG | - | chr4_1:49840006-49840025 | Msa0553060:intron | 45.0% |
| CAAACATTGCAGTGGAAGCA+TGG | - | chr4_1:49840083-49840102 | Msa0553060:intron | 45.0% | |
| CCCAGATTCCTCCTTGTATA+TGG | + | chr4_1:49840211-49840230 | None:intergenic | 45.0% | |
| CCTAAGGCTATGTTTCTTGC+GGG | - | chr4_1:49840474-49840493 | Msa0553060:intron | 45.0% | |
| CTAAGGCTATGTTTCTTGCG+GGG | - | chr4_1:49840475-49840494 | Msa0553060:intron | 45.0% | |
| TGCGGGGACAAGCAAATTAA+AGG | - | chr4_1:49840491-49840510 | Msa0553060:intron | 45.0% | |
| GAGCAAGACTGAGTTCAAAG+AGG | - | chr4_1:49841298-49841317 | Msa0553060:intron | 45.0% | |
| GGTTCTCTCAGACATTCTGT+TGG | - | chr4_1:49841319-49841338 | Msa0553060:intron | 45.0% | |
| ACCCAAGAATCAGATGTAGG+AGG | + | chr4_1:49841539-49841558 | None:intergenic | 45.0% | |
| GCTACCCAAGAATCAGATGT+AGG | + | chr4_1:49841542-49841561 | None:intergenic | 45.0% | |
| CAGCACTGCTTTCTGAACAT+GGG | - | chr4_1:49841813-49841832 | Msa0553060:intron | 45.0% | |
| !! | GAAAGCACCTTTGATGGAAC+TGG | - | chr4_1:49841947-49841966 | Msa0553060:intron | 45.0% |
| ! | TCCATTTGGGGCAATAGAAG+AGG | - | chr4_1:49842221-49842240 | Msa0553060:intron | 45.0% |
| ACCTCTTCTATTGCCCCAAA+TGG | + | chr4_1:49842225-49842244 | None:intergenic | 45.0% | |
| GAGTGCAGATGATGCAAAGT+TGG | - | chr4_1:49842389-49842408 | Msa0553060:CDS | 45.0% | |
| !! | GGGGAGTATTATGTTGCAGT+TGG | - | chr4_1:49842452-49842471 | Msa0553060:CDS | 45.0% |
| !! | GAGTTATGCTGTTTCAGCAG+GGG | + | chr4_1:49842556-49842575 | None:intergenic | 45.0% |
| !! | AATGTGGAAGCTTTGAGGCT+AGG | - | chr4_1:49842703-49842722 | Msa0553060:five_prime_UTR | 45.0% |
| !! | ATGTGGAAGCTTTGAGGCTA+GGG | - | chr4_1:49842704-49842723 | Msa0553060:five_prime_UTR | 45.0% |
| !! | GTTGGTGACATGAAAAGAGC+AGG | - | chr4_1:49842761-49842780 | Msa0553060:five_prime_UTR | 45.0% |
| !! | AGAAAAAGTGGTGGTGGTGG+TGG | - | chr4_1:49838013-49838032 | Msa0553060:CDS | 50.0% |
| !! | GCTCTTGGTTTGCCTGCTAA+AGG | - | chr4_1:49838199-49838218 | Msa0553060:intron | 50.0% |
| GGTAACACCTCGGTTGAGTA+TGG | - | chr4_1:49839184-49839203 | Msa0553060:CDS | 50.0% | |
| GTGAAATGGCGAGCATTCTG+TGG | - | chr4_1:49839362-49839381 | Msa0553060:intron | 50.0% | |
| CATTCTGTGGCAATCCTGTG+CGG | - | chr4_1:49839375-49839394 | Msa0553060:intron | 50.0% | |
| GTTTCAACATGCCATCGCAG+TGG | - | chr4_1:49839491-49839510 | Msa0553060:intron | 50.0% | |
| AACAGGGAAAACCACTGCGA+TGG | + | chr4_1:49839505-49839524 | None:intergenic | 50.0% | |
| !! | GGTTTTCCCTGTTGACTGTC+AGG | - | chr4_1:49839512-49839531 | Msa0553060:intron | 50.0% |
| CACTTAGCGTCCGTTTGGTT+TGG | - | chr4_1:49839978-49839997 | Msa0553060:intron | 50.0% | |
| CACGGTGCAACCAAACCAAA+CGG | + | chr4_1:49839991-49840010 | None:intergenic | 50.0% | |
| CCCGCAAGAAACATAGCCTT+AGG | + | chr4_1:49840477-49840496 | None:intergenic | 50.0% | |
| CTCAGACATTCTGTTGGGCA+TGG | - | chr4_1:49841325-49841344 | Msa0553060:intron | 50.0% | |
| CCATGTTCAGAAAGCAGTGC+TGG | + | chr4_1:49841815-49841834 | None:intergenic | 50.0% | |
| CCAGCACTGCTTTCTGAACA+TGG | - | chr4_1:49841812-49841831 | Msa0553060:intron | 50.0% | |
| ATCGAAGGATTACCTACGCG+TGG | - | chr4_1:49842164-49842183 | Msa0553060:intron | 50.0% | |
| TCTGTAGTGCATGAGCCTCT+AGG | - | chr4_1:49842504-49842523 | Msa0553060:CDS | 50.0% | |
| AGTGTAGAAGAGGAGCCTAG+AGG | + | chr4_1:49842522-49842541 | None:intergenic | 50.0% | |
| ! | TGGCTGCAGAAGTGTAGAAG+AGG | + | chr4_1:49842532-49842551 | None:intergenic | 50.0% |
| !! | TATGCTGTTTCAGCAGGGGT+TGG | + | chr4_1:49842552-49842571 | None:intergenic | 50.0% |
| !! | TGTGGAAGCTTTGAGGCTAG+GGG | - | chr4_1:49842705-49842724 | Msa0553060:five_prime_UTR | 50.0% |
| GAGACTCAGTTGCCCAAGTT+TGG | - | chr4_1:49842727-49842746 | Msa0553060:five_prime_UTR | 50.0% | |
| !! | TGGTGGTGGAAACGCAGTAG+AGG | - | chr4_1:49838027-49838046 | Msa0553060:CDS | 55.0% |
| ATGCTCGCCATACTCAACCG+AGG | + | chr4_1:49839194-49839213 | None:intergenic | 55.0% | |
| ATCTGCCACAGAATGCCACG+TGG | + | chr4_1:49839416-49839435 | None:intergenic | 55.0% | |
| TGAACTGCTGGACGAGAGAG+AGG | + | chr4_1:49839462-49839481 | None:intergenic | 55.0% | |
| ! | CTGTTTGTGGACTGTGGTCC+TGG | - | chr4_1:49839778-49839797 | Msa0553060:intron | 55.0% |
| ! | CATTGCAGTGGAAGCATGGG+TGG | - | chr4_1:49840087-49840106 | Msa0553060:intron | 55.0% |
| ! | GCATGGGTGGACATGCGTTT+TGG | - | chr4_1:49840100-49840119 | Msa0553060:intron | 55.0% |
| TAGGAATGCAGCCAGCAACC+AGG | + | chr4_1:49840458-49840477 | None:intergenic | 55.0% | |
| ! | GGTTGCTGGCTGCATTCCTA+AGG | - | chr4_1:49840458-49840477 | Msa0553060:intron | 55.0% |
| ATTCTGTTGGGCATGGCTGC+TGG | - | chr4_1:49841332-49841351 | Msa0553060:intron | 55.0% | |
| GAGCGTGGCGAATCGTCTTA+AGG | - | chr4_1:49841898-49841917 | Msa0553060:intron | 55.0% | |
| TGCCACAGAATGCCACGTGG+CGG | + | chr4_1:49839413-49839432 | None:intergenic | 60.0% | |
| GGCGTGCAATTGGACCGCAC+AGG | + | chr4_1:49839392-49839411 | None:intergenic | 65.0% | |
| TCCAATTGCACGCCGCCACG+TGG | - | chr4_1:49839398-49839417 | Msa0553060:intron | 65.0% | |
| GGATTACCTACGCGTGGCGC+TGG | - | chr4_1:49842170-49842189 | Msa0553060:intron | 65.0% | |
| GCCACGTGGCGGCGTGCAAT+TGG | + | chr4_1:49839402-49839421 | None:intergenic | 70.0% | |
| CGCCGCCACGTGGCATTCTG+TGG | - | chr4_1:49839408-49839427 | Msa0553060:intron | 70.0% | |
| ! | CCTACGCGTGGCGCTGGACA+CGG | - | chr4_1:49842176-49842195 | Msa0553060:intron | 70.0% |
| CCGTGTCCAGCGCCACGCGT+AGG | + | chr4_1:49842179-49842198 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 49837720 | 49842822 | 49837720 | ID=Msa0553060;Name=Msa0553060 |
| chr4_1 | mRNA | 49837720 | 49842822 | 49837720 | ID=Msa0553060-mRNA-1;Parent=Msa0553060;Name=Msa0553060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=250|1|1|1|0.8|0.66|6|250|375 |
| chr4_1 | exon | 49837720 | 49838188 | 49837720 | ID=Msa0553060-mRNA-1:exon:14080;Parent=Msa0553060-mRNA-1 |
| chr4_1 | exon | 49838300 | 49838428 | 49838300 | ID=Msa0553060-mRNA-1:exon:14079;Parent=Msa0553060-mRNA-1 |
| chr4_1 | exon | 49838533 | 49838751 | 49838533 | ID=Msa0553060-mRNA-1:exon:14078;Parent=Msa0553060-mRNA-1 |
| chr4_1 | exon | 49838986 | 49839282 | 49838986 | ID=Msa0553060-mRNA-1:exon:14077;Parent=Msa0553060-mRNA-1 |
| chr4_1 | exon | 49842287 | 49842657 | 49842287 | ID=Msa0553060-mRNA-1:exon:14076;Parent=Msa0553060-mRNA-1 |
| chr4_1 | exon | 49842680 | 49842822 | 49842680 | ID=Msa0553060-mRNA-1:exon:14075;Parent=Msa0553060-mRNA-1 |
| chr4_1 | five_prime_UTR | 49842680 | 49842822 | 49842680 | ID=Msa0553060-mRNA-1:five_prime_utr;Parent=Msa0553060-mRNA-1 |
| chr4_1 | five_prime_UTR | 49842551 | 49842657 | 49842551 | ID=Msa0553060-mRNA-1:five_prime_utr;Parent=Msa0553060-mRNA-1 |
| chr4_1 | CDS | 49842287 | 49842550 | 49842287 | ID=Msa0553060-mRNA-1:cds;Parent=Msa0553060-mRNA-1 |
| chr4_1 | CDS | 49838986 | 49839282 | 49838986 | ID=Msa0553060-mRNA-1:cds;Parent=Msa0553060-mRNA-1 |
| chr4_1 | CDS | 49838533 | 49838751 | 49838533 | ID=Msa0553060-mRNA-1:cds;Parent=Msa0553060-mRNA-1 |
| chr4_1 | CDS | 49838300 | 49838428 | 49838300 | ID=Msa0553060-mRNA-1:cds;Parent=Msa0553060-mRNA-1 |
| chr4_1 | CDS | 49837970 | 49838188 | 49837970 | ID=Msa0553060-mRNA-1:cds;Parent=Msa0553060-mRNA-1 |
| chr4_1 | three_prime_UTR | 49837720 | 49837969 | 49837720 | ID=Msa0553060-mRNA-1:three_prime_utr;Parent=Msa0553060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
