AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046300 MtrunA17_Chr7g0214241 99.545 220 0 1 1 219 1 220 1.25e-160 442
Msa1046300 MtrunA17_Chr7g0234201 80.193 207 38 1 13 219 12 215 6.01e-120 339
Msa1046300 MtrunA17_Chr1g0189361 62.555 227 73 2 1 219 1 223 1.54e-97 283
Msa1046300 MtrunA17_Chr8g0381841 60.914 197 66 1 12 208 15 200 6.62e-85 251
Msa1046300 MtrunA17_Chr1g0174281 55.399 213 86 3 12 218 13 222 4.99e-84 249
Msa1046300 MtrunA17_Chr4g0032201 55.288 208 90 1 12 219 10 214 6.20e-84 248
Msa1046300 MtrunA17_Chr3g0123821 55.660 212 85 2 12 218 14 221 2.63e-83 247
Msa1046300 MtrunA17_Chr2g0315551 65.318 173 60 0 12 184 11 183 4.55e-82 243
Msa1046300 MtrunA17_Chr2g0319951 58.173 208 86 1 12 219 11 217 1.15e-81 243
Msa1046300 MtrunA17_Chr7g0231131 61.932 176 67 0 12 187 13 188 5.87e-81 241
Msa1046300 MtrunA17_Chr8g0351861 54.378 217 91 2 10 219 12 227 1.05e-80 240
Msa1046300 MtrunA17_Chr2g0276941 60.428 187 73 1 1 186 1 187 2.89e-80 239
Msa1046300 MtrunA17_Chr4g0040781 56.731 208 88 1 12 219 11 216 3.05e-80 239
Msa1046300 MtrunA17_Chr3g0112681 54.327 208 93 1 12 219 10 215 6.14e-80 238
Msa1046300 MtrunA17_Chr4g0046261 56.731 208 88 1 12 219 11 216 7.64e-80 238
Msa1046300 MtrunA17_Chr2g0325091 58.654 208 83 2 12 219 9 213 2.04e-79 236
Msa1046300 MtrunA17_Chr2g0283131 56.731 208 88 1 12 219 11 216 3.06e-79 236
Msa1046300 MtrunA17_Chr7g0275991 52.153 209 97 1 12 217 18 226 6.65e-74 223
Msa1046300 MtrunA17_Chr8g0346421 51.208 207 100 1 12 217 24 230 1.13e-72 220
Msa1046300 MtrunA17_Chr8g0392931 51.852 216 87 4 12 219 12 218 6.62e-67 205
Msa1046300 MtrunA17_Chr6g0482721 48.558 208 105 1 12 219 10 215 1.50e-65 201
Msa1046300 MtrunA17_Chr2g0290891 43.541 209 114 2 13 219 5 211 7.33e-59 184
Msa1046300 MtrunA17_Chr6g0458081 43.810 210 114 2 12 219 4 211 1.74e-57 181
Msa1046300 MtrunA17_Chr8g0349711 44.498 209 113 2 13 219 5 212 1.20e-55 176
Msa1046300 MtrunA17_Chr7g0250531 48.276 174 90 0 12 185 6 179 1.26e-53 171
Msa1046300 MtrunA17_Chr2g0276931 42.927 205 112 1 1 205 1 200 5.69e-53 169
Msa1046300 MtrunA17_Chr4g0055651 46.857 175 93 0 12 186 6 180 1.64e-52 168
Msa1046300 MtrunA17_Chr1g0212521 39.904 208 118 3 12 218 13 214 3.49e-51 165
Msa1046300 MtrunA17_Chr1g0182321 40.385 208 117 4 12 218 13 214 1.79e-50 163
Msa1046300 MtrunA17_Chr8g0335471 50.955 157 77 0 12 168 6 162 1.98e-50 162
Msa1046300 MtrunA17_Chr1g0182301 40.385 208 117 4 12 218 13 214 2.86e-50 162
Msa1046300 MtrunA17_Chr4g0030911 39.810 211 113 5 12 218 13 213 2.35e-49 160
Msa1046300 MtrunA17_Chr7g0263071 44.848 165 90 1 12 175 13 177 3.47e-48 157
Msa1046300 MtrunA17_Chr8g0349681 47.429 175 92 0 5 179 375 549 4.05e-48 166
Msa1046300 MtrunA17_Chr8g0349681 46.199 171 92 0 13 183 174 344 3.42e-47 163
Msa1046300 MtrunA17_Chr8g0349681 49.045 157 80 0 13 169 12 168 1.02e-45 159
Msa1046300 MtrunA17_Chr2g0327911 36.842 209 121 4 12 218 13 212 3.84e-47 154
Msa1046300 MtrunA17_Chr1g0199331 43.182 176 98 2 2 175 18 193 7.06e-47 153
Msa1046300 MtrunA17_Chr3g0109721 41.875 160 93 0 16 175 12 171 7.37e-44 145
Msa1046300 MtrunA17_Chr8g0384311 43.860 171 93 3 12 180 11 180 1.09e-42 143
Msa1046300 MtrunA17_Chr5g0433561 40.000 160 96 0 16 175 12 171 1.59e-41 139
Msa1046300 MtrunA17_Chr3g0123971 38.854 157 96 0 15 171 10 166 4.82e-41 139
Msa1046300 MtrunA17_Chr8g0382221 34.975 203 127 2 15 217 10 207 6.49e-41 138
Msa1046300 MtrunA17_Chr7g0265001 45.833 168 89 2 15 180 17 184 7.73e-41 138
Msa1046300 MtrunA17_Chr5g0400131 39.490 157 95 0 15 171 10 166 1.83e-40 137
Msa1046300 MtrunA17_Chr8g0390561 39.286 168 101 1 16 182 11 178 1.68e-39 134
Msa1046300 MtrunA17_Chr1g0180291 46.012 163 85 3 15 175 15 176 4.47e-39 134
Msa1046300 MtrunA17_Chr1g0159481 42.105 171 96 3 12 180 15 184 8.92e-39 133
Msa1046300 MtrunA17_Chr3g0130271 43.023 172 94 4 12 180 10 180 2.26e-38 132
Msa1046300 MtrunA17_Chr4g0055081 37.580 157 98 0 15 171 10 166 2.38e-38 132
Msa1046300 MtrunA17_Chr8g0383261 41.317 167 91 3 14 173 12 178 1.00e-37 130
Msa1046300 MtrunA17_Chr6g0466301 41.975 162 87 3 14 168 8 169 1.09e-37 130
Msa1046300 MtrunA17_Chr6g0465491 41.975 162 87 3 14 168 8 169 1.09e-37 130
Msa1046300 MtrunA17_Chr1g0197331 44.444 171 92 3 2 169 3 173 4.13e-37 129
Msa1046300 MtrunA17_Chr1g0201121 39.535 172 97 3 14 178 8 179 1.46e-36 127
Msa1046300 MtrunA17_Chr2g0331691 37.209 172 101 3 14 178 10 181 3.34e-35 124
Msa1046300 MtrunA17_Chr4g0034871 36.310 168 100 3 14 174 8 175 5.57e-35 123
Msa1046300 MtrunA17_Chr4g0004661 36.628 172 102 3 14 178 64 235 1.51e-33 121
Msa1046300 MtrunA17_Chr6g0465471 38.158 152 87 3 29 173 5 156 1.09e-25 99.4
Msa1046300 MtrunA17_Chr6g0466161 38.158 152 87 3 29 173 5 156 1.19e-25 99.4
Msa1046300 MtrunA17_Chr3g0138121 27.551 196 138 4 15 209 14 206 1.02e-22 91.7
Msa1046300 MtrunA17_Chr3g0138111 31.056 161 108 3 15 175 14 171 1.16e-22 91.7
Msa1046300 MtrunA17_Chr3g0138101 31.056 161 108 3 15 175 14 171 1.24e-22 91.7
Msa1046300 MtrunA17_Chr6g0466431 38.384 99 52 1 14 112 8 97 7.28e-19 78.6
Msa1046300 MtrunA17_Chr6g0465611 38.384 99 52 1 14 112 8 97 7.28e-19 78.6
Msa1046300 MtrunA17_Chr2g0325101 30.460 174 107 5 14 175 6 177 1.51e-18 80.1
Msa1046300 MtrunA17_Chr3g0117931 29.282 181 114 5 14 182 8 186 9.57e-18 78.2
Msa1046300 MtrunA17_Chr4g0037021 27.624 181 117 5 14 182 6 184 4.89e-17 76.3
Msa1046300 MtrunA17_Chr5g0405791 29.885 174 108 5 14 175 6 177 6.21e-17 75.9
Msa1046300 MtrunA17_Chr8g0371501 30.682 176 104 6 14 175 6 177 6.54e-17 75.9
Msa1046300 MtrunA17_Chr6g0486041 29.282 181 114 5 14 182 6 184 1.41e-16 75.1
Msa1046300 MtrunA17_Chr4g0046211 31.008 129 86 3 14 141 6 132 5.41e-15 69.3
Msa1046300 MtrunA17_Chr2g0331841 45.833 72 38 1 83 153 2 73 7.81e-14 65.1
Msa1046300 MtrunA17_Chr1g0178291 29.940 167 108 4 17 182 431 589 6.77e-13 67.0
Msa1046300 MtrunA17_Chr5g0443631 23.214 168 123 2 15 177 105 271 1.04e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046300 AT2G31680.1 83.410 217 34 2 4 219 2 217 2.64e-131 369
Msa1046300 AT1G05810.1 83.796 216 34 1 4 219 2 216 3.70e-131 368
Msa1046300 AT1G05810.2 83.796 216 34 1 4 219 48 262 5.27e-131 369
Msa1046300 AT2G43130.1 81.019 216 37 1 4 219 2 213 6.83e-127 357
Msa1046300 AT3G07410.1 78.571 210 44 1 10 219 8 216 1.05e-117 334
Msa1046300 AT5G47520.1 63.801 221 70 4 4 219 5 220 9.86e-96 278
Msa1046300 AT1G07410.1 55.769 208 88 2 12 219 10 213 1.63e-83 247
Msa1046300 AT3G12160.1 62.500 176 66 0 12 187 13 188 1.12e-82 245
Msa1046300 AT5G65270.1 64.740 173 61 0 12 184 15 187 1.25e-82 246
Msa1046300 AT4G18430.1 56.938 209 86 2 12 219 11 216 1.34e-82 245
Msa1046300 AT5G47960.1 65.318 173 60 0 12 184 13 185 1.93e-82 245
Msa1046300 AT5G60860.1 57.692 208 86 1 12 219 11 216 7.31e-82 243
Msa1046300 AT1G09630.1 53.365 208 95 1 12 219 10 215 1.28e-81 243
Msa1046300 AT4G39990.1 52.607 211 94 2 12 219 15 222 1.96e-81 242
Msa1046300 AT5G59150.1 63.158 171 63 0 12 182 10 180 5.11e-81 241
Msa1046300 AT1G16920.1 58.173 208 84 2 12 219 11 215 1.13e-80 240
Msa1046300 AT5G45750.1 55.769 208 89 2 12 219 11 215 5.72e-80 238
Msa1046300 AT4G18800.1 63.429 175 64 0 12 186 11 185 6.66e-80 238
Msa1046300 AT3G46830.1 62.573 171 64 0 12 182 10 180 7.04e-80 238
Msa1046300 AT3G46830.2 62.573 171 64 0 12 182 10 180 7.04e-80 238
Msa1046300 AT1G06400.1 58.470 183 76 0 12 194 11 193 1.82e-78 234
Msa1046300 AT1G28550.1 54.808 208 93 1 12 219 11 217 3.29e-78 234
Msa1046300 AT3G15060.1 54.808 208 92 1 12 219 11 216 5.56e-78 233
Msa1046300 AT2G33870.1 53.846 208 95 1 12 219 11 217 1.50e-77 232
Msa1046300 AT1G73640.1 58.140 172 72 0 12 183 11 182 3.72e-71 217
Msa1046300 AT1G18200.1 57.803 173 73 0 12 184 11 183 3.45e-70 214
Msa1046300 AT1G01200.1 51.429 210 98 3 12 217 26 235 9.00e-69 211
Msa1046300 AT4G17170.1 43.541 209 114 2 13 219 5 211 1.34e-58 184
Msa1046300 AT4G17160.1 44.175 206 109 2 13 218 5 204 5.36e-57 179
Msa1046300 AT4G35860.1 47.126 174 92 0 12 185 4 177 2.95e-56 178
Msa1046300 AT5G59150.2 60.630 127 50 0 56 182 3 129 4.24e-56 176
Msa1046300 AT3G11730.1 48.780 164 84 0 12 175 6 169 6.93e-51 164
Msa1046300 AT1G02130.1 49.682 157 79 0 12 168 6 162 1.98e-50 163
Msa1046300 AT4G17530.1 49.045 157 80 0 12 168 6 162 2.57e-50 162
Msa1046300 AT3G53610.2 39.904 208 118 4 12 218 13 214 2.31e-49 160
Msa1046300 AT3G53610.3 39.904 208 118 4 12 218 13 214 2.31e-49 160
Msa1046300 AT3G53610.1 39.904 208 118 4 12 218 13 214 2.31e-49 160
Msa1046300 AT3G09900.1 40.191 209 119 3 12 219 13 216 9.08e-49 159
Msa1046300 AT3G46060.2 39.423 208 119 4 12 218 13 214 1.38e-48 159
Msa1046300 AT3G46060.3 39.423 208 119 4 12 218 13 214 1.38e-48 159
Msa1046300 AT3G46060.1 39.423 208 119 4 12 218 13 214 1.38e-48 159
Msa1046300 AT5G47200.1 48.408 157 81 0 12 168 6 162 2.22e-48 157
Msa1046300 AT5G59840.1 38.942 208 120 4 12 218 13 214 3.39e-48 157
Msa1046300 AT5G03520.1 40.191 209 117 4 12 219 13 214 7.32e-48 157
Msa1046300 AT3G54840.1 44.767 172 90 2 16 186 35 202 3.36e-46 152
Msa1046300 AT3G54840.3 44.444 171 90 2 17 186 2 168 6.68e-46 150
Msa1046300 AT3G54840.2 47.097 155 81 1 16 169 35 189 9.66e-46 150
Msa1046300 AT4G19640.1 41.250 160 94 0 16 175 12 171 8.16e-45 148
Msa1046300 AT5G45130.1 39.216 204 109 4 16 219 12 200 3.37e-44 147
Msa1046300 AT5G45130.2 39.109 202 108 4 18 219 22 208 3.69e-43 144
Msa1046300 AT1G43890.3 46.199 171 89 3 12 180 11 180 1.82e-42 143
Msa1046300 AT1G43890.1 46.199 171 89 3 12 180 11 180 1.82e-42 143
Msa1046300 AT1G43890.2 46.199 171 89 3 12 180 11 180 1.82e-42 143
Msa1046300 AT4G35860.2 47.656 128 67 0 58 185 4 131 5.65e-42 140
Msa1046300 AT5G10260.1 39.490 157 95 0 15 171 10 166 2.09e-41 140
Msa1046300 AT2G44610.1 36.275 204 124 3 15 217 10 208 2.36e-40 137
Msa1046300 AT2G22290.1 38.854 157 96 0 15 171 10 166 3.57e-40 137
Msa1046300 AT4G39890.1 37.975 158 97 1 15 171 10 167 3.86e-39 134
Msa1046300 AT5G03530.2 45.062 162 86 3 10 169 9 169 6.21e-38 131
Msa1046300 AT5G03530.1 45.062 162 86 3 10 169 9 169 6.21e-38 131
Msa1046300 AT5G64990.1 38.961 154 94 0 15 168 8 161 6.55e-38 131
Msa1046300 AT5G03520.2 38.372 172 98 4 49 219 40 204 3.67e-37 129
Msa1046300 AT2G21880.1 41.975 162 87 3 14 168 9 170 4.50e-37 129
Msa1046300 AT1G22740.1 41.317 167 91 3 14 173 8 174 6.95e-37 128
Msa1046300 AT1G52280.1 37.791 172 100 3 14 178 8 179 1.74e-35 125
Msa1046300 AT5G64990.2 35.673 171 103 1 15 178 8 178 3.37e-35 124
Msa1046300 AT3G18820.1 38.095 168 97 3 14 174 8 175 3.62e-35 124
Msa1046300 AT4G09720.1 38.953 172 98 3 14 178 8 179 1.54e-34 122
Msa1046300 AT4G19640.3 37.580 157 97 1 16 172 12 167 8.22e-34 120
Msa1046300 AT4G09720.4 38.418 177 97 4 14 178 8 184 8.26e-34 120
Msa1046300 AT3G16100.1 37.209 172 101 3 14 178 8 179 1.69e-33 119
Msa1046300 AT4G19640.2 39.231 130 79 0 16 145 12 141 2.39e-33 117
Msa1046300 AT5G46025.1 55.660 106 46 1 76 180 6 111 5.55e-33 115
Msa1046300 AT4G09720.3 36.612 183 98 3 14 178 8 190 1.23e-32 117
Msa1046300 AT3G09910.5 39.535 172 101 3 10 179 9 179 4.13e-32 115
Msa1046300 AT3G09910.4 39.535 172 101 3 10 179 9 179 4.13e-32 115
Msa1046300 AT1G49300.2 37.654 162 94 3 14 168 8 169 5.57e-32 115
Msa1046300 AT1G49300.1 37.654 162 94 3 14 168 8 169 5.57e-32 115
Msa1046300 AT3G09910.3 35.648 216 113 5 10 219 9 204 9.47e-32 115
Msa1046300 AT3G09910.1 35.648 216 113 5 10 219 9 204 9.47e-32 115
Msa1046300 AT3G09910.2 35.648 216 113 5 10 219 9 204 9.47e-32 115
Msa1046300 AT5G39620.1 34.574 188 115 4 11 191 2 188 3.29e-30 111
Msa1046300 AT2G21880.4 40.000 145 80 3 31 168 1 145 1.33e-28 106
Msa1046300 AT2G21880.3 40.000 145 80 3 31 168 1 145 1.33e-28 106
Msa1046300 AT2G21880.2 37.037 162 87 4 14 168 9 162 3.44e-27 103
Msa1046300 AT4G09720.6 37.931 145 83 3 41 178 1 145 2.08e-23 92.8
Msa1046300 AT4G09720.5 37.931 145 83 3 41 178 1 145 2.08e-23 92.8
Msa1046300 AT4G09720.2 37.931 145 83 3 41 178 1 145 2.08e-23 92.8
Msa1046300 AT5G55080.1 29.814 161 110 3 15 175 14 171 2.45e-23 94.0
Msa1046300 AT5G20020.1 31.056 161 108 3 15 175 14 171 1.22e-22 92.0
Msa1046300 AT5G20010.1 31.056 161 108 3 15 175 14 171 1.88e-22 91.7
Msa1046300 AT5G55190.1 31.056 161 108 3 15 175 14 171 2.11e-22 91.3
Msa1046300 AT2G44690.1 33.333 180 106 6 14 181 18 195 3.08e-22 90.5
Msa1046300 AT4G35020.1 29.885 174 108 5 14 175 6 177 1.81e-17 77.8
Msa1046300 AT4G35020.2 29.885 174 108 5 14 175 6 177 1.81e-17 77.8
Msa1046300 AT4G35020.3 29.885 174 108 5 14 175 6 177 1.81e-17 77.8
Msa1046300 AT5G62880.1 29.310 174 109 5 14 175 8 179 1.84e-17 78.2
Msa1046300 AT5G45970.1 30.233 172 106 6 14 173 6 175 3.02e-17 77.0
Msa1046300 AT1G75840.1 30.682 176 104 6 14 175 6 177 1.01e-16 75.5
Msa1046300 AT3G48040.1 28.736 174 110 5 14 175 8 179 1.10e-16 75.9
Msa1046300 AT4G28950.1 28.492 179 116 5 14 182 6 182 1.44e-16 75.5
Msa1046300 AT4G35950.1 30.682 176 104 5 14 175 6 177 1.56e-16 75.1
Msa1046300 AT3G51300.1 30.233 172 106 5 16 175 8 177 1.71e-16 75.1
Msa1046300 AT2G17800.2 31.250 176 103 6 14 175 6 177 2.29e-16 74.7
Msa1046300 AT2G17800.1 31.250 176 103 6 14 175 6 177 2.29e-16 74.7
Msa1046300 AT1G20090.1 28.161 174 111 5 14 175 5 176 3.58e-16 74.3
Msa1046300 AT5G62880.2 31.655 139 85 4 14 151 8 137 3.49e-14 68.6
Msa1046300 AT4G08190.1 46.875 64 31 1 105 168 67 127 7.09e-14 66.2
Msa1046300 AT4G35020.4 33.333 114 73 3 16 128 8 119 1.64e-13 65.9
Msa1046300 AT4G35020.5 33.333 114 73 3 16 128 8 119 1.64e-13 65.9
Msa1046300 AT3G48040.2 31.034 145 90 4 14 157 8 143 1.74e-13 66.6

Find 55 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGCTGTTCCTGAATT+TGG 0.127507 7_2:+6791131 Msa1046300:exon
CGGGTTTCAATTGTATAATT+TGG 0.139331 7_2:+6791299 Msa1046300:three_prime_UTR
TTCATCAAACATGCCATAAA+TGG 0.229197 7_2:-6791364 None:intergenic
ATGAAGTGGACATCCATTTA+TGG 0.234933 7_2:+6791351 Msa1046300:three_prime_UTR
AAGAAGTTAAAGCTCAGATT+TGG 0.265031 7_2:+6789536 Msa1046300:CDS
TTCAACACCGATTGTTGCTT+TGG 0.283469 7_2:-6789482 None:intergenic
GGGTTTCAATTGTATAATTT+GGG 0.292303 7_2:+6791300 Msa1046300:three_prime_UTR
TTGATGAATTAAAATTGAAT+TGG 0.302411 7_2:+6791166 Msa1046300:three_prime_UTR
TTTCATGGAAACCTCTGCTT+TGG 0.343525 7_2:+6790943 Msa1046300:CDS
AAGAAAGAAAAGGGAAATAT+AGG 0.348857 7_2:+6789237 Msa1046300:five_prime_UTR
GATTGTTGTTCTTGATTAAT+CGG 0.349311 7_2:+6791398 Msa1046300:three_prime_UTR
AAAATAGCCTTTGCTTTGCT+TGG 0.356179 7_2:-6791110 None:intergenic
GTTTGTCAATGTTACATTCA+AGG 0.384154 7_2:+6791454 Msa1046300:three_prime_UTR
CCTTGTAAGTGTCTGAGTTC+AGG 0.385734 7_2:-6791036 None:intergenic
CTCTTCAAAGTCGTTATAAT+CGG 0.399662 7_2:+6789394 Msa1046300:CDS
AGGCTGAACTATCTGTCAAC+AGG 0.400489 7_2:+6791056 Msa1046300:CDS
TGATGAATTAAAATTGAATT+GGG 0.404956 7_2:+6791167 Msa1046300:three_prime_UTR
AGAAGTTAAAGCTCAGATTT+GGG 0.412522 7_2:+6789537 Msa1046300:CDS
GGTGGGAAACAAGTGTGATT+TGG 0.440037 7_2:+6790859 Msa1046300:CDS
GCTTATTATCGTGGTGCTGT+TGG 0.462704 7_2:+6789598 Msa1046300:CDS
GAATTAAAATTGAATTGGGT+TGG 0.472351 7_2:+6791171 Msa1046300:three_prime_UTR
TGTAATTTCAGTTAATGAAG+TGG 0.484199 7_2:+6791337 Msa1046300:three_prime_UTR
AGCGTATCGTGAGAGGAGAT+TGG 0.495642 7_2:-6789437 None:intergenic
TTTGTTTCCACTTGAATCGC+AGG 0.509563 7_2:+6789305 Msa1046300:five_prime_UTR
AGATATACAACAATGTTAGC+AGG 0.522828 7_2:+6791008 Msa1046300:CDS
CTTCATTCCAAAGCAACAAT+CGG 0.533300 7_2:+6789475 Msa1046300:CDS
GTTACTTCTGCTTATTATCG+TGG 0.541558 7_2:+6789589 Msa1046300:CDS
CCTGAACTCAGACACTTACA+AGG 0.545261 7_2:+6791036 Msa1046300:CDS
AGTTCAGAAGACGAAGGAGG+AGG 0.552796 7_2:+6789361 Msa1046300:CDS
AAAAGTCTTGCGGAATCAGA+AGG 0.554276 7_2:+6790914 Msa1046300:CDS
GCTCAGATTTGGGATACTGC+TGG 0.571910 7_2:+6789547 Msa1046300:CDS
ATAATCGGTGACTCCGCCGT+TGG 0.575874 7_2:+6789409 Msa1046300:CDS
TACGACGGTGGCAATGATGC+TGG 0.577423 7_2:+6790838 Msa1046300:CDS
AGAGATGTGAGCATTGAAGA+AGG 0.582505 7_2:+6790890 Msa1046300:CDS
GGTTTCAATTGTATAATTTG+GGG 0.596046 7_2:+6791301 Msa1046300:three_prime_UTR
CGTTGCGAGCGTATCGTGAG+AGG 0.597765 7_2:-6789444 None:intergenic
GTTTCAATTGTATAATTTGG+GGG 0.599387 7_2:+6791302 Msa1046300:three_prime_UTR
ACAACAACCTGCGATTCAAG+TGG 0.600921 7_2:-6789312 None:intergenic
CAAAAGACTATATATAGCAA+TGG 0.603813 7_2:+6791246 Msa1046300:three_prime_UTR
ATTTGTCGAGTCCAAAGCAG+AGG 0.614933 7_2:-6790954 None:intergenic
TTTCAATTGTATAATTTGGG+GGG 0.616100 7_2:+6791303 Msa1046300:three_prime_UTR
GAGGAGATTGGATTTACCAA+CGG 0.633949 7_2:-6789425 None:intergenic
TCTACATCCAAGCAAAGCAA+AGG 0.634847 7_2:+6791103 Msa1046300:CDS
TGAAGAAGGCAAAAGTCTTG+CGG 0.635809 7_2:+6790904 Msa1046300:CDS
TGTTGTTCTTGATTAATCGG+TGG 0.652261 7_2:+6791401 Msa1046300:three_prime_UTR
TCAAGTTCAGAAGACGAAGG+AGG 0.656404 7_2:+6789358 Msa1046300:CDS
AGGGTCAGTCTTGTTAACAA+TGG 0.671243 7_2:+6791076 Msa1046300:CDS
GGCTGAACTATCTGTCAACA+GGG 0.674038 7_2:+6791057 Msa1046300:CDS
ATACAACAATGTTAGCAGGA+AGG 0.674114 7_2:+6791012 Msa1046300:CDS
GACGGTGGCAATGATGCTGG+TGG 0.677201 7_2:+6790841 Msa1046300:CDS
TGCAGCTCATTGTGATACGA+CGG 0.705964 7_2:+6790823 Msa1046300:intron
AGCTCATTGTGATACGACGG+TGG 0.708088 7_2:+6790826 Msa1046300:intron
GAGATTGGATTTACCAACGG+CGG 0.710073 7_2:-6789422 None:intergenic
ACGGTGGCAATGATGCTGGT+GGG 0.711154 7_2:+6790842 Msa1046300:CDS
ATGTCAAGTTCAGAAGACGA+AGG 0.732589 7_2:+6789355 Msa1046300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAAAAAAAGAAAGAAA+AGG + chr7_2:6789227-6789246 Msa1046300:five_prime_UTR 15.0%
!! TGAAAAAAAAAGAAAGAAAA+GGG + chr7_2:6789228-6789247 Msa1046300:five_prime_UTR 15.0%
!!! GTTAATTTATGTTATGTTTT+TGG + chr7_2:6789735-6789754 Msa1046300:intron 15.0%
!! TATGATATATATTTGATTAC+AGG + chr7_2:6789926-6789945 Msa1046300:intron 15.0%
!! ATGATATATATTTGATTACA+GGG + chr7_2:6789927-6789946 Msa1046300:intron 15.0%
!! TTGATGAATTAAAATTGAAT+TGG + chr7_2:6791166-6791185 Msa1046300:three_prime_UTR 15.0%
!! TGATGAATTAAAATTGAATT+GGG + chr7_2:6791167-6791186 Msa1046300:three_prime_UTR 15.0%
!!! TATCTTCAATTTTAAGTAAA+CGG + chr7_2:6791279-6791298 Msa1046300:three_prime_UTR 15.0%
!! ATGAAAAAAAAAGAAAGAAA+AGG + chr7_2:6789227-6789246 Msa1046300:five_prime_UTR 15.0%
!! TGAAAAAAAAAGAAAGAAAA+GGG + chr7_2:6789228-6789247 Msa1046300:five_prime_UTR 15.0%
!!! GTTAATTTATGTTATGTTTT+TGG + chr7_2:6789735-6789754 Msa1046300:intron 15.0%
!! TATGATATATATTTGATTAC+AGG + chr7_2:6789926-6789945 Msa1046300:intron 15.0%
!! ATGATATATATTTGATTACA+GGG + chr7_2:6789927-6789946 Msa1046300:intron 15.0%
!! TTGATGAATTAAAATTGAAT+TGG + chr7_2:6791166-6791185 Msa1046300:three_prime_UTR 15.0%
!! TGATGAATTAAAATTGAATT+GGG + chr7_2:6791167-6791186 Msa1046300:three_prime_UTR 15.0%
!!! TATCTTCAATTTTAAGTAAA+CGG + chr7_2:6791279-6791298 Msa1046300:three_prime_UTR 15.0%
!!! TTATGTTATGTTTTTGGTTT+TGG + chr7_2:6789741-6789760 Msa1046300:intron 20.0%
!! AGTCTATATATACTTTCTAT+AGG - chr7_2:6790065-6790084 None:intergenic 20.0%
!! TACTAGTATATATCAATGAT+AGG + chr7_2:6790186-6790205 Msa1046300:intron 20.0%
!!! GAATATCTTTGAATAGTTTT+TGG + chr7_2:6791208-6791227 Msa1046300:three_prime_UTR 20.0%
!!! ATCTTCAATTTTAAGTAAAC+GGG + chr7_2:6791280-6791299 Msa1046300:three_prime_UTR 20.0%
!!! TTATGTTATGTTTTTGGTTT+TGG + chr7_2:6789741-6789760 Msa1046300:intron 20.0%
!! AGTCTATATATACTTTCTAT+AGG - chr7_2:6790065-6790084 None:intergenic 20.0%
!! TACTAGTATATATCAATGAT+AGG + chr7_2:6790186-6790205 Msa1046300:intron 20.0%
!!! GAATATCTTTGAATAGTTTT+TGG + chr7_2:6791208-6791227 Msa1046300:three_prime_UTR 20.0%
!!! ATCTTCAATTTTAAGTAAAC+GGG + chr7_2:6791280-6791299 Msa1046300:three_prime_UTR 20.0%
! AAGAAAGAAAAGGGAAATAT+AGG + chr7_2:6789237-6789256 Msa1046300:five_prime_UTR 25.0%
! TAATTAATCTCACATTCCAA+AGG + chr7_2:6789850-6789869 Msa1046300:intron 25.0%
! AAGTATATATAGACTCTGTT+TGG + chr7_2:6790070-6790089 Msa1046300:intron 25.0%
! AAGGGTGGAATTAAATTAAT+TGG + chr7_2:6790137-6790156 Msa1046300:intron 25.0%
!!! CAATTTCTCCTAGTTTTTAT+AGG - chr7_2:6790337-6790356 None:intergenic 25.0%
!!! GTGCATTTTGAAAACTAAAA+GGG - chr7_2:6790401-6790420 None:intergenic 25.0%
!!! AGTGCATTTTGAAAACTAAA+AGG - chr7_2:6790402-6790421 None:intergenic 25.0%
! ATGTTAAGCACAAATTTGTA+GGG - chr7_2:6790440-6790459 None:intergenic 25.0%
! AATGTTAAGCACAAATTTGT+AGG - chr7_2:6790441-6790460 None:intergenic 25.0%
! AACACTTACTATAAGGAATA+TGG - chr7_2:6790555-6790574 None:intergenic 25.0%
!! TTTTCACAACACTTACTATA+AGG - chr7_2:6790562-6790581 None:intergenic 25.0%
!!! GTTTTTTTTAGTGAGTATAC+AGG + chr7_2:6790594-6790613 Msa1046300:intron 25.0%
!!! ATTATGCATAGTTTTTAGAG+AGG - chr7_2:6790694-6790713 None:intergenic 25.0%
! AAAACTATGCATAATTGCTA+TGG + chr7_2:6790699-6790718 Msa1046300:intron 25.0%
! ATAATTGCTATGGTTAATTG+CGG + chr7_2:6790709-6790728 Msa1046300:intron 25.0%
!!! TTCCTGAATTTGGTTTTTAT+TGG + chr7_2:6791141-6791160 Msa1046300:exon 25.0%
! AACCAATAAAAACCAAATTC+AGG - chr7_2:6791146-6791165 None:intergenic 25.0%
! GAATTAAAATTGAATTGGGT+TGG + chr7_2:6791171-6791190 Msa1046300:three_prime_UTR 25.0%
!! TTGCTATATATAGTCTTTTG+TGG - chr7_2:6791246-6791265 None:intergenic 25.0%
! CAAAAGACTATATATAGCAA+TGG + chr7_2:6791246-6791265 Msa1046300:three_prime_UTR 25.0%
! GGGTTTCAATTGTATAATTT+GGG + chr7_2:6791300-6791319 Msa1046300:three_prime_UTR 25.0%
! GGTTTCAATTGTATAATTTG+GGG + chr7_2:6791301-6791320 Msa1046300:three_prime_UTR 25.0%
! GTTTCAATTGTATAATTTGG+GGG + chr7_2:6791302-6791321 Msa1046300:three_prime_UTR 25.0%
! TTTCAATTGTATAATTTGGG+GGG + chr7_2:6791303-6791322 Msa1046300:three_prime_UTR 25.0%
! TGTAATTTCAGTTAATGAAG+TGG + chr7_2:6791337-6791356 Msa1046300:three_prime_UTR 25.0%
!! GATTGTTGTTCTTGATTAAT+CGG + chr7_2:6791398-6791417 Msa1046300:three_prime_UTR 25.0%
! AAGAAAGAAAAGGGAAATAT+AGG + chr7_2:6789237-6789256 Msa1046300:five_prime_UTR 25.0%
! TAATTAATCTCACATTCCAA+AGG + chr7_2:6789850-6789869 Msa1046300:intron 25.0%
! AAGTATATATAGACTCTGTT+TGG + chr7_2:6790070-6790089 Msa1046300:intron 25.0%
! AAGGGTGGAATTAAATTAAT+TGG + chr7_2:6790137-6790156 Msa1046300:intron 25.0%
!!! CAATTTCTCCTAGTTTTTAT+AGG - chr7_2:6790337-6790356 None:intergenic 25.0%
!!! GTGCATTTTGAAAACTAAAA+GGG - chr7_2:6790401-6790420 None:intergenic 25.0%
!!! AGTGCATTTTGAAAACTAAA+AGG - chr7_2:6790402-6790421 None:intergenic 25.0%
! ATGTTAAGCACAAATTTGTA+GGG - chr7_2:6790440-6790459 None:intergenic 25.0%
! AATGTTAAGCACAAATTTGT+AGG - chr7_2:6790441-6790460 None:intergenic 25.0%
! AACACTTACTATAAGGAATA+TGG - chr7_2:6790555-6790574 None:intergenic 25.0%
!! TTTTCACAACACTTACTATA+AGG - chr7_2:6790562-6790581 None:intergenic 25.0%
!!! GTTTTTTTTAGTGAGTATAC+AGG + chr7_2:6790594-6790613 Msa1046300:intron 25.0%
!!! ATTATGCATAGTTTTTAGAG+AGG - chr7_2:6790694-6790713 None:intergenic 25.0%
! AAAACTATGCATAATTGCTA+TGG + chr7_2:6790699-6790718 Msa1046300:intron 25.0%
! ATAATTGCTATGGTTAATTG+CGG + chr7_2:6790709-6790728 Msa1046300:intron 25.0%
!!! TTCCTGAATTTGGTTTTTAT+TGG + chr7_2:6791141-6791160 Msa1046300:exon 25.0%
! AACCAATAAAAACCAAATTC+AGG - chr7_2:6791146-6791165 None:intergenic 25.0%
! GAATTAAAATTGAATTGGGT+TGG + chr7_2:6791171-6791190 Msa1046300:three_prime_UTR 25.0%
!! TTGCTATATATAGTCTTTTG+TGG - chr7_2:6791246-6791265 None:intergenic 25.0%
! CAAAAGACTATATATAGCAA+TGG + chr7_2:6791246-6791265 Msa1046300:three_prime_UTR 25.0%
! GGGTTTCAATTGTATAATTT+GGG + chr7_2:6791300-6791319 Msa1046300:three_prime_UTR 25.0%
! GGTTTCAATTGTATAATTTG+GGG + chr7_2:6791301-6791320 Msa1046300:three_prime_UTR 25.0%
! GTTTCAATTGTATAATTTGG+GGG + chr7_2:6791302-6791321 Msa1046300:three_prime_UTR 25.0%
! TTTCAATTGTATAATTTGGG+GGG + chr7_2:6791303-6791322 Msa1046300:three_prime_UTR 25.0%
! TGTAATTTCAGTTAATGAAG+TGG + chr7_2:6791337-6791356 Msa1046300:three_prime_UTR 25.0%
!! GATTGTTGTTCTTGATTAAT+CGG + chr7_2:6791398-6791417 Msa1046300:three_prime_UTR 25.0%
CTCTTCAAAGTCGTTATAAT+CGG + chr7_2:6789394-6789413 Msa1046300:CDS 30.0%
AAGAAGTTAAAGCTCAGATT+TGG + chr7_2:6789536-6789555 Msa1046300:CDS 30.0%
AGAAGTTAAAGCTCAGATTT+GGG + chr7_2:6789537-6789556 Msa1046300:CDS 30.0%
TAGGAAGTTACTTGATTACA+TGG + chr7_2:6790205-6790224 Msa1046300:intron 30.0%
TGTGAAGACCTATAAAAACT+AGG + chr7_2:6790326-6790345 Msa1046300:intron 30.0%
! ATGTGTACTCTAGTGTTTTA+TGG - chr7_2:6790498-6790517 None:intergenic 30.0%
CTTACTATAAGGAATATGGA+AGG - chr7_2:6790551-6790570 None:intergenic 30.0%
!!! TTTTTTAGTGAGTATACAGG+AGG + chr7_2:6790597-6790616 Msa1046300:intron 30.0%
!! GTGCTTTTTGAATATCATAG+AGG + chr7_2:6790623-6790642 Msa1046300:intron 30.0%
TTGTTTAAAGAGATCTCATG+TGG + chr7_2:6790655-6790674 Msa1046300:intron 30.0%
AATGTCTAAGTATAGCTAGA+AGG + chr7_2:6790770-6790789 Msa1046300:intron 30.0%
!! ATCAGAAGGTTTGTTTTTCA+TGG + chr7_2:6790928-6790947 Msa1046300:CDS 30.0%
AGATATACAACAATGTTAGC+AGG + chr7_2:6791008-6791027 Msa1046300:CDS 30.0%
CGGGTTTCAATTGTATAATT+TGG + chr7_2:6791299-6791318 Msa1046300:three_prime_UTR 30.0%
TTCATCAAACATGCCATAAA+TGG - chr7_2:6791367-6791386 None:intergenic 30.0%
GTTTGTCAATGTTACATTCA+AGG + chr7_2:6791454-6791473 Msa1046300:three_prime_UTR 30.0%
CTCTTCAAAGTCGTTATAAT+CGG + chr7_2:6789394-6789413 Msa1046300:CDS 30.0%
AAGAAGTTAAAGCTCAGATT+TGG + chr7_2:6789536-6789555 Msa1046300:CDS 30.0%
AGAAGTTAAAGCTCAGATTT+GGG + chr7_2:6789537-6789556 Msa1046300:CDS 30.0%
TAGGAAGTTACTTGATTACA+TGG + chr7_2:6790205-6790224 Msa1046300:intron 30.0%
TGTGAAGACCTATAAAAACT+AGG + chr7_2:6790326-6790345 Msa1046300:intron 30.0%
! ATGTGTACTCTAGTGTTTTA+TGG - chr7_2:6790498-6790517 None:intergenic 30.0%
CTTACTATAAGGAATATGGA+AGG - chr7_2:6790551-6790570 None:intergenic 30.0%
!!! TTTTTTAGTGAGTATACAGG+AGG + chr7_2:6790597-6790616 Msa1046300:intron 30.0%
!! GTGCTTTTTGAATATCATAG+AGG + chr7_2:6790623-6790642 Msa1046300:intron 30.0%
TTGTTTAAAGAGATCTCATG+TGG + chr7_2:6790655-6790674 Msa1046300:intron 30.0%
AATGTCTAAGTATAGCTAGA+AGG + chr7_2:6790770-6790789 Msa1046300:intron 30.0%
!! ATCAGAAGGTTTGTTTTTCA+TGG + chr7_2:6790928-6790947 Msa1046300:CDS 30.0%
AGATATACAACAATGTTAGC+AGG + chr7_2:6791008-6791027 Msa1046300:CDS 30.0%
CGGGTTTCAATTGTATAATT+TGG + chr7_2:6791299-6791318 Msa1046300:three_prime_UTR 30.0%
TTCATCAAACATGCCATAAA+TGG - chr7_2:6791367-6791386 None:intergenic 30.0%
GTTTGTCAATGTTACATTCA+AGG + chr7_2:6791454-6791473 Msa1046300:three_prime_UTR 30.0%
CTTCATTCCAAAGCAACAAT+CGG + chr7_2:6789475-6789494 Msa1046300:CDS 35.0%
GTTACTTCTGCTTATTATCG+TGG + chr7_2:6789589-6789608 Msa1046300:CDS 35.0%
!!! AGAACTACTTTTGATAGCGT+TGG + chr7_2:6789649-6789668 Msa1046300:CDS 35.0%
TAATCTCACATTCCAAAGGA+AGG + chr7_2:6789854-6789873 Msa1046300:intron 35.0%
! GATTACAGGGTTTGAAATTG+AGG + chr7_2:6789940-6789959 Msa1046300:intron 35.0%
TGCTGCAAACTTTGATATTG+CGG + chr7_2:6789978-6789997 Msa1046300:intron 35.0%
AATCTCACTAGTACACTCTA+AGG + chr7_2:6790118-6790137 Msa1046300:intron 35.0%
ATCTCACTAGTACACTCTAA+GGG + chr7_2:6790119-6790138 Msa1046300:intron 35.0%
AAACTTTGATATTGCGGTTG+CGG + chr7_2:6790250-6790269 Msa1046300:intron 35.0%
ATTGCCAATGTGGTTGTAAT+TGG + chr7_2:6790289-6790308 Msa1046300:intron 35.0%
AAACACTAGAGTACACATTC+AGG + chr7_2:6790500-6790519 Msa1046300:intron 35.0%
ATACAACAATGTTAGCAGGA+AGG + chr7_2:6791012-6791031 Msa1046300:CDS 35.0%
AAAATAGCCTTTGCTTTGCT+TGG - chr7_2:6791113-6791132 None:intergenic 35.0%
!! TTTCTTGCTGTTCCTGAATT+TGG + chr7_2:6791131-6791150 Msa1046300:exon 35.0%
ATGAAGTGGACATCCATTTA+TGG + chr7_2:6791351-6791370 Msa1046300:three_prime_UTR 35.0%
TGTTGTTCTTGATTAATCGG+TGG + chr7_2:6791401-6791420 Msa1046300:three_prime_UTR 35.0%
CTTCATTCCAAAGCAACAAT+CGG + chr7_2:6789475-6789494 Msa1046300:CDS 35.0%
GTTACTTCTGCTTATTATCG+TGG + chr7_2:6789589-6789608 Msa1046300:CDS 35.0%
!!! AGAACTACTTTTGATAGCGT+TGG + chr7_2:6789649-6789668 Msa1046300:CDS 35.0%
TAATCTCACATTCCAAAGGA+AGG + chr7_2:6789854-6789873 Msa1046300:intron 35.0%
! GATTACAGGGTTTGAAATTG+AGG + chr7_2:6789940-6789959 Msa1046300:intron 35.0%
TGCTGCAAACTTTGATATTG+CGG + chr7_2:6789978-6789997 Msa1046300:intron 35.0%
AATCTCACTAGTACACTCTA+AGG + chr7_2:6790118-6790137 Msa1046300:intron 35.0%
ATCTCACTAGTACACTCTAA+GGG + chr7_2:6790119-6790138 Msa1046300:intron 35.0%
AAACTTTGATATTGCGGTTG+CGG + chr7_2:6790250-6790269 Msa1046300:intron 35.0%
ATTGCCAATGTGGTTGTAAT+TGG + chr7_2:6790289-6790308 Msa1046300:intron 35.0%
AAACACTAGAGTACACATTC+AGG + chr7_2:6790500-6790519 Msa1046300:intron 35.0%
ATACAACAATGTTAGCAGGA+AGG + chr7_2:6791012-6791031 Msa1046300:CDS 35.0%
AAAATAGCCTTTGCTTTGCT+TGG - chr7_2:6791113-6791132 None:intergenic 35.0%
!! TTTCTTGCTGTTCCTGAATT+TGG + chr7_2:6791131-6791150 Msa1046300:exon 35.0%
ATGAAGTGGACATCCATTTA+TGG + chr7_2:6791351-6791370 Msa1046300:three_prime_UTR 35.0%
TGTTGTTCTTGATTAATCGG+TGG + chr7_2:6791401-6791420 Msa1046300:three_prime_UTR 35.0%
TTTGTTTCCACTTGAATCGC+AGG + chr7_2:6789305-6789324 Msa1046300:five_prime_UTR 40.0%
ATGTCAAGTTCAGAAGACGA+AGG + chr7_2:6789355-6789374 Msa1046300:CDS 40.0%
GAGGAGATTGGATTTACCAA+CGG - chr7_2:6789428-6789447 None:intergenic 40.0%
! TTCAACACCGATTGTTGCTT+TGG - chr7_2:6789485-6789504 None:intergenic 40.0%
TTCCAAAGGAAGGAAAGAGA+TGG + chr7_2:6789864-6789883 Msa1046300:intron 40.0%
ATCCATCTCTTTCCTTCCTT+TGG - chr7_2:6789869-6789888 None:intergenic 40.0%
CGGCAAAGTATGAGCAAATA+TGG + chr7_2:6789998-6790017 Msa1046300:intron 40.0%
ATGAGCAAATATGGCAGATG+TGG + chr7_2:6790007-6790026 Msa1046300:intron 40.0%
CGCTGCAAACTTTGATATTG+CGG + chr7_2:6790244-6790263 Msa1046300:intron 40.0%
ATGGGCAAATATTGCCAATG+TGG + chr7_2:6790279-6790298 Msa1046300:intron 40.0%
AGCACCAATTACAACCACAT+TGG - chr7_2:6790296-6790315 None:intergenic 40.0%
! CACAAATTTGTAGGGAGTAC+AGG - chr7_2:6790432-6790451 None:intergenic 40.0%
CTATGGTTAATTGCGGTTGT+GGG + chr7_2:6790716-6790735 Msa1046300:intron 40.0%
!! AGAGATGTGAGCATTGAAGA+AGG + chr7_2:6790890-6790909 Msa1046300:CDS 40.0%
TGAAGAAGGCAAAAGTCTTG+CGG + chr7_2:6790904-6790923 Msa1046300:CDS 40.0%
AAAAGTCTTGCGGAATCAGA+AGG + chr7_2:6790914-6790933 Msa1046300:CDS 40.0%
TTTCATGGAAACCTCTGCTT+TGG + chr7_2:6790943-6790962 Msa1046300:CDS 40.0%
!! TGTGAAGACAGCTTTTGAGA+TGG + chr7_2:6790976-6790995 Msa1046300:CDS 40.0%
!! AGGGTCAGTCTTGTTAACAA+TGG + chr7_2:6791076-6791095 Msa1046300:CDS 40.0%
TCTACATCCAAGCAAAGCAA+AGG + chr7_2:6791103-6791122 Msa1046300:CDS 40.0%
TTTGTTTCCACTTGAATCGC+AGG + chr7_2:6789305-6789324 Msa1046300:five_prime_UTR 40.0%
ATGTCAAGTTCAGAAGACGA+AGG + chr7_2:6789355-6789374 Msa1046300:CDS 40.0%
GAGGAGATTGGATTTACCAA+CGG - chr7_2:6789428-6789447 None:intergenic 40.0%
! TTCAACACCGATTGTTGCTT+TGG - chr7_2:6789485-6789504 None:intergenic 40.0%
TTCCAAAGGAAGGAAAGAGA+TGG + chr7_2:6789864-6789883 Msa1046300:intron 40.0%
ATCCATCTCTTTCCTTCCTT+TGG - chr7_2:6789869-6789888 None:intergenic 40.0%
CGGCAAAGTATGAGCAAATA+TGG + chr7_2:6789998-6790017 Msa1046300:intron 40.0%
ATGAGCAAATATGGCAGATG+TGG + chr7_2:6790007-6790026 Msa1046300:intron 40.0%
CGCTGCAAACTTTGATATTG+CGG + chr7_2:6790244-6790263 Msa1046300:intron 40.0%
ATGGGCAAATATTGCCAATG+TGG + chr7_2:6790279-6790298 Msa1046300:intron 40.0%
AGCACCAATTACAACCACAT+TGG - chr7_2:6790296-6790315 None:intergenic 40.0%
! CACAAATTTGTAGGGAGTAC+AGG - chr7_2:6790432-6790451 None:intergenic 40.0%
CTATGGTTAATTGCGGTTGT+GGG + chr7_2:6790716-6790735 Msa1046300:intron 40.0%
!! AGAGATGTGAGCATTGAAGA+AGG + chr7_2:6790890-6790909 Msa1046300:CDS 40.0%
TGAAGAAGGCAAAAGTCTTG+CGG + chr7_2:6790904-6790923 Msa1046300:CDS 40.0%
AAAAGTCTTGCGGAATCAGA+AGG + chr7_2:6790914-6790933 Msa1046300:CDS 40.0%
TTTCATGGAAACCTCTGCTT+TGG + chr7_2:6790943-6790962 Msa1046300:CDS 40.0%
!! TGTGAAGACAGCTTTTGAGA+TGG + chr7_2:6790976-6790995 Msa1046300:CDS 40.0%
!! AGGGTCAGTCTTGTTAACAA+TGG + chr7_2:6791076-6791095 Msa1046300:CDS 40.0%
TCTACATCCAAGCAAAGCAA+AGG + chr7_2:6791103-6791122 Msa1046300:CDS 40.0%
ACAACAACCTGCGATTCAAG+TGG - chr7_2:6789315-6789334 None:intergenic 45.0%
TCAAGTTCAGAAGACGAAGG+AGG + chr7_2:6789358-6789377 Msa1046300:CDS 45.0%
GAGATTGGATTTACCAACGG+CGG - chr7_2:6789425-6789444 None:intergenic 45.0%
!! GCTTATTATCGTGGTGCTGT+TGG + chr7_2:6789598-6789617 Msa1046300:CDS 45.0%
!!! CTTTTGATAGCGTTGGTCGT+TGG + chr7_2:6789656-6789675 Msa1046300:CDS 45.0%
! AGGGTTTGAAATTGAGGTCG+TGG + chr7_2:6789946-6789965 Msa1046300:intron 45.0%
! TCACTAGTACACTCTAAGGG+TGG + chr7_2:6790122-6790141 Msa1046300:intron 45.0%
ATTGCGGTTGCGGCAAAATA+TGG + chr7_2:6790260-6790279 Msa1046300:intron 45.0%
TTGCGGTTGCGGCAAAATAT+GGG + chr7_2:6790261-6790280 Msa1046300:intron 45.0%
! AATTGCATTGACCTCCTCTG+AGG + chr7_2:6790352-6790371 Msa1046300:intron 45.0%
TTAATGAGACACCTCAGAGG+AGG - chr7_2:6790366-6790385 None:intergenic 45.0%
CACTTAATGAGACACCTCAG+AGG - chr7_2:6790369-6790388 None:intergenic 45.0%
GTGTCAGATAGAGACGTAAC+AGG - chr7_2:6790472-6790491 None:intergenic 45.0%
GCTATGGTTAATTGCGGTTG+TGG + chr7_2:6790715-6790734 Msa1046300:intron 45.0%
TGCAGCTCATTGTGATACGA+CGG + chr7_2:6790823-6790842 Msa1046300:intron 45.0%
GGTGGGAAACAAGTGTGATT+TGG + chr7_2:6790859-6790878 Msa1046300:CDS 45.0%
ATTTGTCGAGTCCAAAGCAG+AGG - chr7_2:6790957-6790976 None:intergenic 45.0%
CCTTGTAAGTGTCTGAGTTC+AGG - chr7_2:6791039-6791058 None:intergenic 45.0%
CCTGAACTCAGACACTTACA+AGG + chr7_2:6791036-6791055 Msa1046300:CDS 45.0%
AGGCTGAACTATCTGTCAAC+AGG + chr7_2:6791056-6791075 Msa1046300:CDS 45.0%
GGCTGAACTATCTGTCAACA+GGG + chr7_2:6791057-6791076 Msa1046300:CDS 45.0%
!!! TGGGTTGGCTTTTTCTTGCA+TGG + chr7_2:6791186-6791205 Msa1046300:three_prime_UTR 45.0%
ACAACAACCTGCGATTCAAG+TGG - chr7_2:6789315-6789334 None:intergenic 45.0%
TCAAGTTCAGAAGACGAAGG+AGG + chr7_2:6789358-6789377 Msa1046300:CDS 45.0%
GAGATTGGATTTACCAACGG+CGG - chr7_2:6789425-6789444 None:intergenic 45.0%
!! GCTTATTATCGTGGTGCTGT+TGG + chr7_2:6789598-6789617 Msa1046300:CDS 45.0%
!!! CTTTTGATAGCGTTGGTCGT+TGG + chr7_2:6789656-6789675 Msa1046300:CDS 45.0%
! AGGGTTTGAAATTGAGGTCG+TGG + chr7_2:6789946-6789965 Msa1046300:intron 45.0%
! TCACTAGTACACTCTAAGGG+TGG + chr7_2:6790122-6790141 Msa1046300:intron 45.0%
ATTGCGGTTGCGGCAAAATA+TGG + chr7_2:6790260-6790279 Msa1046300:intron 45.0%
TTGCGGTTGCGGCAAAATAT+GGG + chr7_2:6790261-6790280 Msa1046300:intron 45.0%
! AATTGCATTGACCTCCTCTG+AGG + chr7_2:6790352-6790371 Msa1046300:intron 45.0%
TTAATGAGACACCTCAGAGG+AGG - chr7_2:6790366-6790385 None:intergenic 45.0%
CACTTAATGAGACACCTCAG+AGG - chr7_2:6790369-6790388 None:intergenic 45.0%
GTGTCAGATAGAGACGTAAC+AGG - chr7_2:6790472-6790491 None:intergenic 45.0%
GCTATGGTTAATTGCGGTTG+TGG + chr7_2:6790715-6790734 Msa1046300:intron 45.0%
TGCAGCTCATTGTGATACGA+CGG + chr7_2:6790823-6790842 Msa1046300:intron 45.0%
GGTGGGAAACAAGTGTGATT+TGG + chr7_2:6790859-6790878 Msa1046300:CDS 45.0%
ATTTGTCGAGTCCAAAGCAG+AGG - chr7_2:6790957-6790976 None:intergenic 45.0%
CCTTGTAAGTGTCTGAGTTC+AGG - chr7_2:6791039-6791058 None:intergenic 45.0%
CCTGAACTCAGACACTTACA+AGG + chr7_2:6791036-6791055 Msa1046300:CDS 45.0%
AGGCTGAACTATCTGTCAAC+AGG + chr7_2:6791056-6791075 Msa1046300:CDS 45.0%
GGCTGAACTATCTGTCAACA+GGG + chr7_2:6791057-6791076 Msa1046300:CDS 45.0%
!!! TGGGTTGGCTTTTTCTTGCA+TGG + chr7_2:6791186-6791205 Msa1046300:three_prime_UTR 45.0%
AGTTCAGAAGACGAAGGAGG+AGG + chr7_2:6789361-6789380 Msa1046300:CDS 50.0%
AGCGTATCGTGAGAGGAGAT+TGG - chr7_2:6789440-6789459 None:intergenic 50.0%
! GCTCAGATTTGGGATACTGC+TGG + chr7_2:6789547-6789566 Msa1046300:CDS 50.0%
! ATTTGTAGGGAGTACAGGCG+AGG - chr7_2:6790427-6790446 None:intergenic 50.0%
!! CACATTCAGGTTGTGCTGCT+AGG + chr7_2:6790513-6790532 Msa1046300:intron 50.0%
AGCTCATTGTGATACGACGG+TGG + chr7_2:6790826-6790845 Msa1046300:intron 50.0%
AGTTCAGAAGACGAAGGAGG+AGG + chr7_2:6789361-6789380 Msa1046300:CDS 50.0%
AGCGTATCGTGAGAGGAGAT+TGG - chr7_2:6789440-6789459 None:intergenic 50.0%
! GCTCAGATTTGGGATACTGC+TGG + chr7_2:6789547-6789566 Msa1046300:CDS 50.0%
! ATTTGTAGGGAGTACAGGCG+AGG - chr7_2:6790427-6790446 None:intergenic 50.0%
!! CACATTCAGGTTGTGCTGCT+AGG + chr7_2:6790513-6790532 Msa1046300:intron 50.0%
AGCTCATTGTGATACGACGG+TGG + chr7_2:6790826-6790845 Msa1046300:intron 50.0%
ATAATCGGTGACTCCGCCGT+TGG + chr7_2:6789409-6789428 Msa1046300:CDS 55.0%
TACGACGGTGGCAATGATGC+TGG + chr7_2:6790838-6790857 Msa1046300:CDS 55.0%
ACGGTGGCAATGATGCTGGT+GGG + chr7_2:6790842-6790861 Msa1046300:CDS 55.0%
ATAATCGGTGACTCCGCCGT+TGG + chr7_2:6789409-6789428 Msa1046300:CDS 55.0%
TACGACGGTGGCAATGATGC+TGG + chr7_2:6790838-6790857 Msa1046300:CDS 55.0%
ACGGTGGCAATGATGCTGGT+GGG + chr7_2:6790842-6790861 Msa1046300:CDS 55.0%
CGTTGCGAGCGTATCGTGAG+AGG - chr7_2:6789447-6789466 None:intergenic 60.0%
GACGGTGGCAATGATGCTGG+TGG + chr7_2:6790841-6790860 Msa1046300:CDS 60.0%
CGTTGCGAGCGTATCGTGAG+AGG - chr7_2:6789447-6789466 None:intergenic 60.0%
GACGGTGGCAATGATGCTGG+TGG + chr7_2:6790841-6790860 Msa1046300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6789220 6791494 6789220 ID=Msa1046300;Name=Msa1046300
chr7_2 mRNA 6789220 6791494 6789220 ID=Msa1046300-mRNA-1;Parent=Msa1046300;Name=Msa1046300-mRNA-1;_AED=0.04;_eAED=0.04;_QI=135|1|1|1|1|1|2|347|219
chr7_2 exon 6789220 6789694 6789220 ID=Msa1046300-mRNA-1:exon:1612;Parent=Msa1046300-mRNA-1
chr7_2 exon 6790828 6791494 6790828 ID=Msa1046300-mRNA-1:exon:1613;Parent=Msa1046300-mRNA-1
chr7_2 five_prime_UTR 6789220 6789354 6789220 ID=Msa1046300-mRNA-1:five_prime_utr;Parent=Msa1046300-mRNA-1
chr7_2 CDS 6789355 6789694 6789355 ID=Msa1046300-mRNA-1:cds;Parent=Msa1046300-mRNA-1
chr7_2 CDS 6790828 6791147 6790828 ID=Msa1046300-mRNA-1:cds;Parent=Msa1046300-mRNA-1
chr7_2 three_prime_UTR 6791148 6791494 6791148 ID=Msa1046300-mRNA-1:three_prime_utr;Parent=Msa1046300-mRNA-1
Gene Sequence

>Msa1046300

ATGTCAAGTTCAGAAGACGAAGGAGGAGGAGAAGAATATCTCTTCAAAGTCGTTATAATCGGTGACTCCGCCGTTGGTAAATCCAATCTCCTCTCACGATACGCTCGCAACGAGTTCAATCTTCATTCCAAAGCAACAATCGGTGTTGAATTTCAAACTCAGAGCTTAGAAATTGATTCTAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAACGTTTTCGTGCTGTTACTTCTGCTTATTATCGTGGTGCTGTTGGTGCTCTTATTGTTTATGATATTTCTCGCAGAACTACTTTTGATAGCGTTGGTCGTTGGCTCGATGAACTCAAGACTCATTGTGATACGACGGTGGCAATGATGCTGGTGGGAAACAAGTGTGATTTGGATAATATAAGAGATGTGAGCATTGAAGAAGGCAAAAGTCTTGCGGAATCAGAAGGTTTGTTTTTCATGGAAACCTCTGCTTTGGACTCGACAAATGTGAAGACAGCTTTTGAGATGGTTATCAGAGAGATATACAACAATGTTAGCAGGAAGGTCCTGAACTCAGACACTTACAAGGCTGAACTATCTGTCAACAGGGTCAGTCTTGTTAACAATGGCAACTCTACATCCAAGCAAAGCAAAGGCTATTTTTCTTGCTGTTCCTGA
Protein sequence

>Msa1046300

MSSSEDEGGGEEYLFKVVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQSLEIDSKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLVGNKCDLDNIRDVSIEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYNNVSRKVLNSDTYKAELSVNRVSLVNNGNSTSKQSKGYFSCCS*