AlfalfaGEDB | Msa1187290

M. sativa cultivar zhongmu-4 / Msa1187290

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1187290	XP_024631910.1	89.888	89	9	0	21	109	1032	1120	9.58e-46	168

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0042770	Msa1187290	0.917389	5.633568e-86	-8.615850e-47
Msa0160620	Msa1187290	0.807647	4.564129e-50	-8.615850e-47
Msa0185640	Msa1187290	-0.801441	8.991620e-49	-8.615850e-47
Msa0265820	Msa1187290	0.804679	1.923859e-49	-8.615850e-47
Msa0270270	Msa1187290	0.803847	2.867213e-49	-8.615850e-47
Msa0326670	Msa1187290	0.805630	1.216773e-49	-8.615850e-47
Msa0339790	Msa1187290	0.853742	1.953771e-61	-8.615850e-47
Msa0458310	Msa1187290	0.815619	8.426198e-52	-8.615850e-47
Msa0540070	Msa1187290	0.827344	1.648119e-54	-8.615850e-47
Msa0553060	Msa1187290	0.807754	4.331193e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 38 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCTTGAAATCCTTT+GGG	0.373281	8_1:-26860650	None:intergenic
AACAAACCCAAAGGATTTCA+AGG	0.473412	8_1:+26860644	Msa1187290:three_prime_UTR
AACTTTAGAAGATAGTAAGC+CGG	0.555137	8_1:+26860220	Msa1187290:CDS
AAGGTAACCTCATCCAAGAA+AGG	0.563434	8_1:-26860359	None:intergenic
AATTTATTATCTGGTAGCAT+AGG	0.515942	8_1:+26860692	Msa1187290:three_prime_UTR
AGAGGTAGAGGCAGCGGAAG+AGG	0.457632	8_1:+26860579	Msa1187290:CDS
AGGACCGAGGCTTCTTGGCG+GGG	0.566024	8_1:+26859987	Msa1187290:CDS
AGTATACTTCACACAGTATC+CGG	0.453436	8_1:+26860142	Msa1187290:CDS
ATACGGTCCTTTCTTGGATG+AGG	0.503815	8_1:+26860352	Msa1187290:CDS
ATCTTCTCAAACAAACCCAA+AGG	0.644202	8_1:+26860635	Msa1187290:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAATGTAAAAATCCAGGGT+TGG	-	chr8_1:26860076-26860095	None:intergenic	30.0%
CACCATTAATGTAAAAATCC+AGG	-	chr8_1:26860081-26860100	None:intergenic	30.0%
ATTGCAAATGACAATCTTGA+AGG	+	chr8_1:26860293-26860312	Msa1187290:CDS	30.0%
ATCATCATCATCATCTTCTT+CGG	-	chr8_1:26860426-26860445	None:intergenic	30.0%
TGATGAAACATATTCTGACT+AGG	+	chr8_1:26860448-26860467	Msa1187290:intron	30.0%
TAAGTCATGCAAGAATAAGA+GGG	-	chr8_1:26860493-26860512	None:intergenic	30.0%
ATAAGTCATGCAAGAATAAG+AGG	-	chr8_1:26860494-26860513	None:intergenic	30.0%
TTGTATTGTTCACGAATGTT+AGG	+	chr8_1:26860555-26860574	Msa1187290:intron	30.0%
TTAATGTAAAAATCCAGGGT+TGG	-	chr8_1:26860076-26860095	None:intergenic	30.0%
CACCATTAATGTAAAAATCC+AGG	-	chr8_1:26860081-26860100	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	26859970	26860758	26859970	ID=Msa1187290;Name=Msa1187290
chr8_1	mRNA	26859970	26860758	26859970	ID=Msa1187290-mRNA-1;Parent=Msa1187290;Name=Msa1187290-mRNA-1;_AED=0.25;_eAED=0.60;_QI=0\|0\|0.33\|0.66\|0\|0\|3\|146\|110
chr8_1	exon	26859970	26860023	26859970	ID=Msa1187290-mRNA-1:exon:9443;Parent=Msa1187290-mRNA-1
chr8_1	exon	26860131	26860373	26860131	ID=Msa1187290-mRNA-1:exon:9444;Parent=Msa1187290-mRNA-1
chr8_1	exon	26860577	26860758	26860577	ID=Msa1187290-mRNA-1:exon:9445;Parent=Msa1187290-mRNA-1
chr8_1	CDS	26859970	26860023	26859970	ID=Msa1187290-mRNA-1:cds;Parent=Msa1187290-mRNA-1
chr8_1	CDS	26860131	26860373	26860131	ID=Msa1187290-mRNA-1:cds;Parent=Msa1187290-mRNA-1
chr8_1	CDS	26860577	26860612	26860577	ID=Msa1187290-mRNA-1:cds;Parent=Msa1187290-mRNA-1
chr8_1	three_prime_UTR	26860613	26860758	26860613	ID=Msa1187290-mRNA-1:three_prime_utr;Parent=Msa1187290-mRNA-1

Gene Sequence	>Msa1187290 TGTTTAGGCACGCAGTTAGGACCGAGGCTTCTTGGCGGGGTTGACGATTCAGGGATCCAAAAACAAGTATACTTCACACAGTATCCGGAAGGAAAAAAAGATTGGTTGGCTGTGATTAAGACCAAGGCGAGAAGCACAATTCAAACTTTAGAAGATAGTAAGCCGGAGAAAGAAGTTCCATACCAAGATGAATCAATCACACAATCACACGTGACAATTGCAAATGACAATCTTGAAGGAAGTCTTGTTGATTTAGTTGGAGAAGTTGAGGAAGCATACGGTCCTTTCTTGGATGAGGTAGAGGTAGAGGCAGCGGAAGAGGTAAAAGAATAA
Protein sequence	>Msa1187290 CLGTQLGPRLLGGVDDSGIQKQVYFTQYPEGKKDWLAVIKTKARSTIQTLEDSKPEKEVPYQDESITQSHVTIANDNLEGSLVDLVGEVEEAYGPFLDEVEVEAAEEVKE*