Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554400 | XP_003607481.2 | 96.154 | 468 | 18 | 0 | 1 | 468 | 1 | 468 | 0.0 | 931 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554400 | sp|Q5KS41|WSD11_ARATH | 28.541 | 473 | 309 | 9 | 9 | 461 | 15 | 478 | 6.55e-58 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554400 | G7JTU9 | 95.085 | 468 | 23 | 0 | 1 | 468 | 1 | 468 | 0.0 | 921 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0363440 | Msa0554400 | 0.802707 | 4.937418e-49 | -8.615850e-47 |
| Msa0554400 | Msa0648150 | 0.992477 | 1.594993e-193 | -8.615850e-47 |
| Msa0554400 | Msa0648250 | 0.959620 | 1.211292e-117 | -8.615850e-47 |
| Msa0554400 | Msa0691190 | 0.934781 | 2.370716e-96 | -8.615850e-47 |
| Msa0554400 | Msa1009150 | 0.801479 | 8.829877e-49 | -8.615850e-47 |
| Msa0554400 | Msa1135660 | 0.801266 | 9.762370e-49 | -8.615850e-47 |
| Msa0554400 | Msa1178000 | 0.801906 | 7.217183e-49 | -8.615850e-47 |
| Msa0554400 | Msa1237830 | 0.807382 | 5.195024e-50 | -8.615850e-47 |
| Msa0554400 | Msa1278850 | 0.824782 | 6.698176e-54 | -8.615850e-47 |
| Msa0554400 | Msa1296650 | 0.805976 | 1.029064e-49 | -8.615850e-47 |
| Msa0554400 | Msa1318250 | 0.814204 | 1.735223e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554400 | MtrunA17_Chr4g0040261 | 92.657 | 463 | 33 | 1 | 1 | 462 | 34 | 496 | 0.0 | 870 |
| Msa0554400 | MtrunA17_Chr4g0040271 | 96.411 | 418 | 15 | 0 | 1 | 418 | 1 | 418 | 0.0 | 839 |
| Msa0554400 | MtrunA17_Chr4g0040251 | 84.861 | 469 | 69 | 2 | 1 | 467 | 1 | 469 | 0.0 | 828 |
| Msa0554400 | MtrunA17_Chr4g0040221 | 68.094 | 467 | 142 | 4 | 1 | 463 | 1 | 464 | 0.0 | 628 |
| Msa0554400 | MtrunA17_Chr4g0040231 | 62.099 | 467 | 168 | 4 | 4 | 463 | 5 | 469 | 0.0 | 595 |
| Msa0554400 | MtrunA17_Chr4g0040001 | 63.248 | 468 | 164 | 5 | 1 | 461 | 1 | 467 | 0.0 | 588 |
| Msa0554400 | MtrunA17_Chr7g0217051 | 59.565 | 460 | 184 | 2 | 5 | 462 | 7 | 466 | 0.0 | 581 |
| Msa0554400 | MtrunA17_Chr4g0040011 | 63.341 | 431 | 150 | 5 | 1 | 424 | 9 | 438 | 0.0 | 542 |
| Msa0554400 | MtrunA17_Chr7g0248011 | 51.327 | 452 | 218 | 2 | 5 | 455 | 7 | 457 | 6.24e-164 | 471 |
| Msa0554400 | MtrunA17_Chr6g0457271 | 57.103 | 359 | 148 | 5 | 63 | 416 | 2 | 359 | 6.56e-145 | 419 |
| Msa0554400 | MtrunA17_Chr6g0457281 | 52.577 | 291 | 132 | 3 | 85 | 370 | 1 | 290 | 1.42e-107 | 321 |
| Msa0554400 | MtrunA17_Chr1g0147071 | 27.155 | 464 | 307 | 11 | 5 | 447 | 6 | 459 | 8.55e-49 | 174 |
| Msa0554400 | MtrunA17_Chr5g0393471 | 27.612 | 268 | 186 | 5 | 189 | 453 | 65 | 327 | 5.92e-24 | 102 |
| Msa0554400 | MtrunA17_Chr6g0457291 | 51.351 | 74 | 36 | 0 | 393 | 466 | 1 | 74 | 2.74e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554400 | AT5G53390.1 | 28.541 | 473 | 309 | 9 | 9 | 461 | 15 | 478 | 6.66e-59 | 201 |
| Msa0554400 | AT5G12420.1 | 28.788 | 462 | 298 | 8 | 9 | 447 | 7 | 460 | 2.63e-58 | 199 |
| Msa0554400 | AT3G49190.1 | 28.755 | 466 | 296 | 8 | 9 | 447 | 18 | 474 | 4.48e-58 | 200 |
| Msa0554400 | AT5G12420.2 | 29.426 | 418 | 265 | 7 | 9 | 403 | 7 | 417 | 1.93e-55 | 192 |
| Msa0554400 | AT5G16350.3 | 29.111 | 450 | 294 | 13 | 9 | 447 | 7 | 442 | 4.25e-53 | 185 |
| Msa0554400 | AT3G49210.1 | 27.968 | 497 | 317 | 10 | 9 | 468 | 26 | 518 | 3.29e-52 | 184 |
| Msa0554400 | AT3G49200.1 | 28.480 | 467 | 300 | 11 | 9 | 447 | 26 | 486 | 8.21e-52 | 183 |
| Msa0554400 | AT5G22490.1 | 29.247 | 465 | 284 | 15 | 10 | 447 | 12 | 458 | 9.18e-52 | 182 |
| Msa0554400 | AT1G72110.1 | 28.238 | 471 | 309 | 12 | 6 | 458 | 9 | 468 | 1.76e-51 | 181 |
| Msa0554400 | AT5G16350.1 | 27.623 | 467 | 299 | 12 | 9 | 447 | 7 | 462 | 6.69e-51 | 180 |
| Msa0554400 | AT2G38995.2 | 28.602 | 472 | 305 | 13 | 9 | 461 | 21 | 479 | 4.15e-49 | 175 |
| Msa0554400 | AT5G53380.1 | 26.432 | 454 | 300 | 8 | 9 | 439 | 9 | 451 | 3.13e-48 | 172 |
| Msa0554400 | AT5G37300.1 | 29.449 | 472 | 293 | 15 | 9 | 458 | 17 | 470 | 1.01e-47 | 171 |
| Msa0554400 | AT5G37300.4 | 29.449 | 472 | 293 | 15 | 9 | 458 | 35 | 488 | 1.39e-47 | 171 |
| Msa0554400 | AT1G72110.2 | 27.696 | 473 | 300 | 14 | 6 | 458 | 9 | 459 | 1.01e-46 | 168 |
| Msa0554400 | AT2G38995.3 | 28.947 | 418 | 263 | 14 | 64 | 461 | 7 | 410 | 2.48e-42 | 155 |
| Msa0554400 | AT5G16350.2 | 28.165 | 387 | 240 | 11 | 9 | 367 | 7 | 383 | 2.66e-42 | 155 |
| Msa0554400 | AT5G22490.2 | 29.870 | 385 | 227 | 14 | 10 | 367 | 12 | 380 | 1.07e-40 | 150 |
| Msa0554400 | AT3G49210.2 | 28.534 | 382 | 233 | 9 | 9 | 354 | 26 | 403 | 3.27e-40 | 150 |
| Msa0554400 | AT2G38995.4 | 29.600 | 375 | 232 | 13 | 64 | 420 | 7 | 367 | 3.22e-38 | 143 |
| Msa0554400 | AT5G37300.2 | 29.521 | 376 | 234 | 11 | 9 | 367 | 35 | 396 | 6.08e-36 | 137 |
| Msa0554400 | AT5G37300.3 | 31.461 | 267 | 169 | 8 | 9 | 269 | 35 | 293 | 1.21e-27 | 113 |
| Msa0554400 | AT2G38995.1 | 23.423 | 222 | 155 | 4 | 251 | 461 | 72 | 289 | 3.41e-13 | 70.5 |
| Msa0554400 | AT2G43255.1 | 25.397 | 189 | 129 | 5 | 283 | 466 | 33 | 214 | 2.23e-11 | 63.9 |
| Msa0554400 | AT2G43255.2 | 25.397 | 189 | 129 | 5 | 283 | 466 | 34 | 215 | 2.71e-11 | 63.5 |
Find 121 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTCCTTCACTGATTT+TGG | 0.094141 | 4_1:+51637495 | Msa0554400:CDS |
| GATTGATAGGTAAGAAATTT+TGG | 0.167979 | 4_1:-51636957 | None:intergenic |
| ATCTTTAATCATTGAGCTTT+TGG | 0.190332 | 4_1:-51637529 | None:intergenic |
| AATTGTCCACTTGGACTTAC+TGG | 0.240549 | 4_1:-51636847 | None:intergenic |
| TGCTTTCCAGACAAATTCTA+AGG | 0.254620 | 4_1:-51639682 | None:intergenic |
| TAAATAAGATTGAGTTAATA+AGG | 0.260439 | 4_1:-51640587 | None:intergenic |
| CACGGTGCATAGTACTAAAA+TGG | 0.269930 | 4_1:+51636801 | Msa0554400:exon |
| GGCTGGCTTGGCACAACTTT+GGG | 0.276206 | 4_1:-51639650 | None:intergenic |
| TATTTAATCTTTGTTCTTGT+TGG | 0.288350 | 4_1:-51640270 | None:intergenic |
| TATTGAATGGCTCTTAGATA+TGG | 0.311951 | 4_1:+51639749 | Msa0554400:CDS |
| AATCAGCCTTTGTCATATCT+TGG | 0.336966 | 4_1:-51639581 | None:intergenic |
| TTCCACTGGCCCAATCAAAT+TGG | 0.339045 | 4_1:-51639936 | None:intergenic |
| AAGATGACAAAACACCTATA+TGG | 0.354141 | 4_1:+51637547 | Msa0554400:CDS |
| TTGTCATATCTTGGATTGAT+TGG | 0.356004 | 4_1:-51639572 | None:intergenic |
| CATGCAAGAGATTGACAATA+AGG | 0.360961 | 4_1:+51639491 | Msa0554400:CDS |
| ACACATATAAAGTACCATTA+TGG | 0.364656 | 4_1:-51636992 | None:intergenic |
| TTGGTAACTTCCAATGTTCC+TGG | 0.365297 | 4_1:-51639553 | None:intergenic |
| GGCTGATTCAAAATCTCCTT+GGG | 0.370234 | 4_1:+51639596 | Msa0554400:CDS |
| GCTAACAAACTACGGTTACT+TGG | 0.370658 | 4_1:+51640527 | Msa0554400:three_prime_UTR |
| TTTCATCAAGAGAGAATGAT+AGG | 0.372720 | 4_1:-51637614 | None:intergenic |
| GTTCCTTCAGCATTGCTTGT+TGG | 0.387997 | 4_1:-51637288 | None:intergenic |
| AGGCTGGCTTGGCACAACTT+TGG | 0.391874 | 4_1:-51639651 | None:intergenic |
| CTAACCCCTTAGAATTTGTC+TGG | 0.400986 | 4_1:+51639676 | Msa0554400:CDS |
| GCCAGTGGAACCTATGGCTT+TGG | 0.408139 | 4_1:+51639949 | Msa0554400:CDS |
| GCAGTTGCTAAACATATCTA+TGG | 0.414646 | 4_1:+51639884 | Msa0554400:CDS |
| ACCACAAGACAAACCACTTT+GGG | 0.414710 | 4_1:+51637245 | Msa0554400:CDS |
| TCCACGCTTCTCCTCCATAA+TGG | 0.415488 | 4_1:+51636978 | Msa0554400:CDS |
| GCTTGGCACAACTTTGGGAT+TGG | 0.421008 | 4_1:-51639645 | None:intergenic |
| TTCTAAGGGGTTAGATAGGC+TGG | 0.423278 | 4_1:-51639667 | None:intergenic |
| AGGCTGATTCAAAATCTCCT+TGG | 0.423311 | 4_1:+51639595 | Msa0554400:CDS |
| GAGGAGAAGCGTGGATTGAT+AGG | 0.424660 | 4_1:-51636970 | None:intergenic |
| GTTGTCATATCCAATTTGAT+TGG | 0.424756 | 4_1:+51639926 | Msa0554400:CDS |
| GTATATGTAAGAAAGAAATA+TGG | 0.427920 | 4_1:-51639623 | None:intergenic |
| GGAAATCTCCATTACTGCCT+TGG | 0.431427 | 4_1:-51640249 | None:intergenic |
| TTGATCACATGGTTTCTTGT+TGG | 0.431534 | 4_1:-51640550 | None:intergenic |
| GGAATATTGGAACCTTCATA+TGG | 0.433653 | 4_1:-51637149 | None:intergenic |
| CAAATTCTAAGGGGTTAGAT+AGG | 0.434322 | 4_1:-51639671 | None:intergenic |
| TTGTCATATCCAATTTGATT+GGG | 0.434336 | 4_1:+51639927 | Msa0554400:CDS |
| ATCAGTGAAGGAATTGAAAA+GGG | 0.435338 | 4_1:-51637490 | None:intergenic |
| CCTTCCTCACCATTCCATAT+AGG | 0.442303 | 4_1:-51637561 | None:intergenic |
| GTGCATAGTAAGAGCCTTTG+AGG | 0.443190 | 4_1:+51640220 | Msa0554400:CDS |
| AATCAGTGAAGGAATTGAAA+AGG | 0.445410 | 4_1:-51637491 | None:intergenic |
| TGGTGATGGTTACTCTCTCA+TGG | 0.446072 | 4_1:+51637338 | Msa0554400:CDS |
| GCAAGAACATCAAATTCAAC+AGG | 0.450264 | 4_1:+51639513 | Msa0554400:CDS |
| GGCTTGTACTTTACAATGAC+AGG | 0.453421 | 4_1:+51639989 | Msa0554400:CDS |
| TCCGAAAACATATGAACATA+GGG | 0.457117 | 4_1:-51636884 | None:intergenic |
| GATTGGGCCAGTGGAACCTA+TGG | 0.464336 | 4_1:+51639943 | Msa0554400:CDS |
| CACCACAAGACAAACCACTT+TGG | 0.467869 | 4_1:+51637244 | Msa0554400:CDS |
| GATATGGAGCTGAAATTAAG+AGG | 0.473758 | 4_1:+51639765 | Msa0554400:CDS |
| TAATCCGCGCTATATATAGA+AGG | 0.475627 | 4_1:-51640503 | None:intergenic |
| AACATCAAATTCAACAGGAT+TGG | 0.477689 | 4_1:+51639518 | Msa0554400:CDS |
| CTTTCAGTGTGAGTTTGAAG+AGG | 0.481509 | 4_1:+51640327 | Msa0554400:three_prime_UTR |
| ACAATAAATGATGTGATCAC+TGG | 0.488070 | 4_1:+51639441 | Msa0554400:CDS |
| TTGTCAAGTTTAGTTTCTGT+TGG | 0.490811 | 4_1:+51640360 | Msa0554400:three_prime_UTR |
| ATTAAATGCATTTCCCAAAG+TGG | 0.491593 | 4_1:-51637258 | None:intergenic |
| CAATTGTTATCTCCCAAGAA+AGG | 0.493013 | 4_1:+51637435 | Msa0554400:CDS |
| CAATAAATGATGTGATCACT+GGG | 0.495823 | 4_1:+51639442 | Msa0554400:CDS |
| GGAAAAGACAAAGGAAGAGA+AGG | 0.498632 | 4_1:-51637396 | None:intergenic |
| AAAACGATCAAGTCTAAGCT+TGG | 0.498977 | 4_1:+51637639 | Msa0554400:CDS |
| TCCCAAAGTGGTTTGTCTTG+TGG | 0.504133 | 4_1:-51637246 | None:intergenic |
| TTCAAACTTCACCATGCACT+TGG | 0.505787 | 4_1:+51637318 | Msa0554400:CDS |
| GCCAAAGCCATAGGTTCCAC+TGG | 0.507030 | 4_1:-51639950 | None:intergenic |
| ATCCAATTTGATTGGGCCAG+TGG | 0.512219 | 4_1:+51639934 | Msa0554400:CDS |
| GGATGGTTTGCCAAAGCCAT+AGG | 0.516215 | 4_1:-51639959 | None:intergenic |
| ATCCGAAAACATATGAACAT+AGG | 0.525975 | 4_1:-51636885 | None:intergenic |
| GTAAAGTACAAGCCTTTCAC+AGG | 0.526010 | 4_1:-51639980 | None:intergenic |
| ATAGTTTGAGAGTCGTCCAT+TGG | 0.527468 | 4_1:-51636925 | None:intergenic |
| AGGGGTTAGATAGGCTGGCT+TGG | 0.528713 | 4_1:-51639662 | None:intergenic |
| TTGGCAAACCATCCTGTGAA+AGG | 0.530246 | 4_1:+51639968 | Msa0554400:CDS |
| GGTCATATCCAAGGCAGTAA+TGG | 0.532557 | 4_1:+51640241 | Msa0554400:CDS |
| TATAAAGAAGCAGAAGGGCA+TGG | 0.532952 | 4_1:+51640300 | Msa0554400:three_prime_UTR |
| TTGGGAGATAACAATTGTGA+TGG | 0.542990 | 4_1:-51637429 | None:intergenic |
| GAAAAGACAAAGGAAGAGAA+GGG | 0.543491 | 4_1:-51637395 | None:intergenic |
| CTTCACCATGCACTTGGTGA+TGG | 0.544042 | 4_1:+51637324 | Msa0554400:CDS |
| ACTATCTATAAAGAAGCAGA+AGG | 0.555060 | 4_1:+51640294 | Msa0554400:three_prime_UTR |
| TTGCTTAGTACCAGGAACAT+TGG | 0.555485 | 4_1:+51639543 | Msa0554400:CDS |
| AGTACAAGCCTTTCACAGGA+TGG | 0.556400 | 4_1:-51639976 | None:intergenic |
| GGTGATGGTTACTCTCTCAT+GGG | 0.557425 | 4_1:+51637339 | Msa0554400:CDS |
| ATAAAGAAGCAGAAGGGCAT+GGG | 0.563560 | 4_1:+51640301 | Msa0554400:three_prime_UTR |
| GCTTTCCAGACAAATTCTAA+GGG | 0.564784 | 4_1:-51639681 | None:intergenic |
| TTATGTGTCAAAGATTATGA+TGG | 0.567297 | 4_1:+51637215 | Msa0554400:CDS |
| TTTGGAATTAGAAATTCCAA+TGG | 0.569395 | 4_1:+51636909 | Msa0554400:CDS |
| ACCAAGATGGCAAAATGAAG+TGG | 0.575574 | 4_1:+51637100 | Msa0554400:CDS |
| GACAAAACACCTATATGGAA+TGG | 0.575761 | 4_1:+51637552 | Msa0554400:CDS |
| GATTGGTGTTGCTTAGTACC+AGG | 0.580882 | 4_1:+51639535 | Msa0554400:CDS |
| TGGCTCTGTCACATCTTCAA+AGG | 0.583413 | 4_1:-51636827 | None:intergenic |
| CCTATATGGAATGGTGAGGA+AGG | 0.587168 | 4_1:+51637561 | Msa0554400:CDS |
| AATTGTGATGGTTTGCGTGA+AGG | 0.589854 | 4_1:-51637417 | None:intergenic |
| TCAGTGAAGGAATTGAAAAG+GGG | 0.592189 | 4_1:-51637489 | None:intergenic |
| CGGATTATGCTAACAAACTA+CGG | 0.596757 | 4_1:+51640519 | Msa0554400:three_prime_UTR |
| TGCCTTGGATATGACCTCAA+AGG | 0.599981 | 4_1:-51640234 | None:intergenic |
| CAGTGAAGGAATTGAAAAGG+GGG | 0.603771 | 4_1:-51637488 | None:intergenic |
| AGTAACCATCACCAAGTGCA+TGG | 0.610345 | 4_1:-51637329 | None:intergenic |
| AAGCACAAAATATAATCAAG+AGG | 0.610368 | 4_1:+51639700 | Msa0554400:CDS |
| ACCATTATGGAGGAGAAGCG+TGG | 0.611896 | 4_1:-51636979 | None:intergenic |
| GCAGCTTGAAGACCATATGA+AGG | 0.612976 | 4_1:+51637137 | Msa0554400:CDS |
| GCTCCATCCAAAATCAGTGA+AGG | 0.613358 | 4_1:-51637502 | None:intergenic |
| TATCCAACAAGCAATGCTGA+AGG | 0.616041 | 4_1:+51637285 | Msa0554400:CDS |
| AGCCTTTGAGGTCATATCCA+AGG | 0.617831 | 4_1:+51640232 | Msa0554400:CDS |
| TTAACCTTCTATATATAGCG+CGG | 0.622682 | 4_1:+51640499 | Msa0554400:three_prime_UTR |
| TTAGAAATAACTTGATCACA+TGG | 0.628372 | 4_1:-51640561 | None:intergenic |
| ACAGAGCCAGTAAGTCCAAG+TGG | 0.634141 | 4_1:+51636841 | Msa0554400:CDS |
| CTTTCCAGACAAATTCTAAG+GGG | 0.636642 | 4_1:-51639680 | None:intergenic |
| ATCAATCCAAGATATGACAA+AGG | 0.639015 | 4_1:+51639575 | Msa0554400:CDS |
| GCTGAAATTAAGAGGACATG+AGG | 0.640508 | 4_1:+51639773 | Msa0554400:CDS |
| TACAATGACAGGTGGACCTG+AGG | 0.642479 | 4_1:+51640000 | Msa0554400:CDS |
| TTAGTCTCTACTTTCTAACA+CGG | 0.646121 | 4_1:+51636783 | Msa0554400:five_prime_UTR |
| CATATAAAGTACCATTATGG+AGG | 0.648669 | 4_1:-51636989 | None:intergenic |
| CTATCTATAAAGAAGCAGAA+GGG | 0.651751 | 4_1:+51640295 | Msa0554400:three_prime_UTR |
| CTGATTCAAAATCTCCTTGG+GGG | 0.654193 | 4_1:+51639598 | Msa0554400:CDS |
| GTATTGAAGAATTGTCCACT+TGG | 0.655797 | 4_1:-51636856 | None:intergenic |
| GCTGATTCAAAATCTCCTTG+GGG | 0.657580 | 4_1:+51639597 | Msa0554400:CDS |
| GATCAAGTCTAAGCTTGGAG+TGG | 0.658375 | 4_1:+51637644 | Msa0554400:CDS |
| GATAGGTTTGATAGTACACA+AGG | 0.661721 | 4_1:-51637597 | None:intergenic |
| AACACCTATATGGAATGGTG+AGG | 0.661811 | 4_1:+51637557 | Msa0554400:CDS |
| TTGTACTTTACAATGACAGG+TGG | 0.673805 | 4_1:+51639992 | Msa0554400:CDS |
| TTGCGTGAAGGAAAAGACAA+AGG | 0.685949 | 4_1:-51637405 | None:intergenic |
| CCGAAAACATATGAACATAG+GGG | 0.692361 | 4_1:-51636883 | None:intergenic |
| ATATAGGTGAGAGACCAAGA+TGG | 0.699636 | 4_1:+51637087 | Msa0554400:intron |
| AAAACATATGAACATAGGGG+TGG | 0.715907 | 4_1:-51636880 | None:intergenic |
| AATAAATGATGTGATCACTG+GGG | 0.785544 | 4_1:+51639443 | Msa0554400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTTTAAAAAATAA+AGG | + | chr4_1:51638001-51638020 | Msa0554400:intron | 0.0% |
| !!! | TTAAAATTTTAAAAAATAAA+GGG | + | chr4_1:51638002-51638021 | Msa0554400:intron | 0.0% |
| !!! | TTAAAAATTTTAATTTTTTT+AGG | + | chr4_1:51638607-51638626 | Msa0554400:intron | 0.0% |
| !!! | ATATTTTTTTGAAAATTTTG+GGG | + | chr4_1:51638033-51638052 | Msa0554400:intron | 10.0% |
| !! | TTTGTAATTTAAAAAGAATT+AGG | + | chr4_1:51638062-51638081 | Msa0554400:intron | 10.0% |
| !! | TTGTAATTTAAAAAGAATTA+GGG | + | chr4_1:51638063-51638082 | Msa0554400:intron | 10.0% |
| !!! | AATTTTTTAAAACTGTAAAT+TGG | - | chr4_1:51638090-51638109 | None:intergenic | 10.0% |
| !!! | TTACAGTTTTAAAAAATTAT+AGG | + | chr4_1:51638092-51638111 | Msa0554400:intron | 10.0% |
| !!! | TACAGTTTTAAAAAATTATA+GGG | + | chr4_1:51638093-51638112 | Msa0554400:intron | 10.0% |
| !! | AAATTTGAAAATTGAAATTA+GGG | + | chr4_1:51638632-51638651 | Msa0554400:intron | 10.0% |
| !!! | AATTTTTTGGAAATTTATTA+GGG | + | chr4_1:51638936-51638955 | Msa0554400:intron | 10.0% |
| !!! | AATTTTCAAATTTTACATTT+AGG | - | chr4_1:51638991-51639010 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTAGAGAATTTT+AGG | + | chr4_1:51637859-51637878 | Msa0554400:intron | 15.0% |
| !! | TGTAATTTAAAAAGAATTAG+GGG | + | chr4_1:51638064-51638083 | Msa0554400:intron | 15.0% |
| !!! | ACAGTTTTAAAAAATTATAG+GGG | + | chr4_1:51638094-51638113 | Msa0554400:intron | 15.0% |
| !! | GAAATTCTCTAAATTTAATT+TGG | + | chr4_1:51638217-51638236 | Msa0554400:intron | 15.0% |
| !! | ACAAAAATATTTAGAAATGA+AGG | - | chr4_1:51638539-51638558 | None:intergenic | 15.0% |
| !!! | CTAATTTCAATTTTCAAATT+TGG | - | chr4_1:51638633-51638652 | None:intergenic | 15.0% |
| !! | CAAATTTGAAAATTGAAATT+AGG | + | chr4_1:51638631-51638650 | Msa0554400:intron | 15.0% |
| !! | AATTTGAAAATTGAAATTAG+GGG | + | chr4_1:51638633-51638652 | Msa0554400:intron | 15.0% |
| !! | AAATTTCAAAAAATGTTGAT+GGG | + | chr4_1:51638665-51638684 | Msa0554400:intron | 15.0% |
| !!! | AATTTTAATGACAACTTTTT+GGG | - | chr4_1:51638838-51638857 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTTCCAAAAAAT+AGG | + | chr4_1:51638902-51638921 | Msa0554400:intron | 15.0% |
| !!! | TTTTCAATTTCCAAAAAATA+GGG | + | chr4_1:51638903-51638922 | Msa0554400:intron | 15.0% |
| !!! | CAATTTTTTGGAAATTTATT+AGG | + | chr4_1:51638935-51638954 | Msa0554400:intron | 15.0% |
| !! | CAAATATGAATTTAATTGTT+TGG | - | chr4_1:51639117-51639136 | None:intergenic | 15.0% |
| !!! | AGTTTTGTAGTATAATATTT+CGG | - | chr4_1:51639208-51639227 | None:intergenic | 15.0% |
| !! | TATGAATTTGGTTATAATTA+AGG | - | chr4_1:51639315-51639334 | None:intergenic | 15.0% |
| !! | CAAGTGAAAAATTATAATTA+AGG | - | chr4_1:51639353-51639372 | None:intergenic | 15.0% |
| !!! | TAATTATAATTTTTCACTTG+TGG | + | chr4_1:51639353-51639372 | Msa0554400:intron | 15.0% |
| !! | TAAATAAGATTGAGTTAATA+AGG | - | chr4_1:51640590-51640609 | None:intergenic | 15.0% |
| !! | TATATGCTACATGTTTATAT+AGG | + | chr4_1:51637071-51637090 | Msa0554400:intron | 20.0% |
| !!! | ATTCAATTGATTCACTTTTA+GGG | - | chr4_1:51637173-51637192 | None:intergenic | 20.0% |
| !!! | AATTCAATTGATTCACTTTT+AGG | - | chr4_1:51637174-51637193 | None:intergenic | 20.0% |
| !! | ATATATAAATTTGCGATAGA+GGG | - | chr4_1:51637678-51637697 | None:intergenic | 20.0% |
| !! | AAAAAATCAAATACACTCTT+AGG | - | chr4_1:51637847-51637866 | None:intergenic | 20.0% |
| !!! | AAATTCCATTGTTAACATTT+TGG | + | chr4_1:51637945-51637964 | Msa0554400:intron | 20.0% |
| !!! | TTTGAACATTTTGAAAAGTA+CGG | + | chr4_1:51638121-51638140 | Msa0554400:intron | 20.0% |
| !!! | TTACTTTTTCAAATTTTGCA+AGG | - | chr4_1:51638153-51638172 | None:intergenic | 20.0% |
| !! | AATTTGAAAAAGTAACAAGA+AGG | + | chr4_1:51638158-51638177 | Msa0554400:intron | 20.0% |
| !! | ATTTGAAAAAGTAACAAGAA+GGG | + | chr4_1:51638159-51638178 | Msa0554400:intron | 20.0% |
| !! | TTTAGATCAATTTCAGTATT+TGG | - | chr4_1:51638294-51638313 | None:intergenic | 20.0% |
| !! | AATACTGAAATTGATCTAAA+AGG | + | chr4_1:51638294-51638313 | Msa0554400:intron | 20.0% |
| !!! | TTTGAAGAATTTAGAATTCT+AGG | + | chr4_1:51638463-51638482 | Msa0554400:intron | 20.0% |
| !!! | TCTAAATATTTTTGTTTGCA+TGG | + | chr4_1:51638544-51638563 | Msa0554400:intron | 20.0% |
| !! | CAAATTTCAAAAAATGTTGA+TGG | + | chr4_1:51638664-51638683 | Msa0554400:intron | 20.0% |
| !!! | CAATTTTAATGACAACTTTT+TGG | - | chr4_1:51638839-51638858 | None:intergenic | 20.0% |
| !! | TTTCAATTTCCAAAAAATAG+GGG | + | chr4_1:51638904-51638923 | Msa0554400:intron | 20.0% |
| !!! | TTGAAAATTTTGGAAATGTA+AGG | + | chr4_1:51638964-51638983 | Msa0554400:intron | 20.0% |
| !!! | CCAAATTCATACATTTTATT+CGG | + | chr4_1:51639324-51639343 | Msa0554400:intron | 20.0% |
| !! | GTATATGTAAGAAAGAAATA+TGG | - | chr4_1:51639626-51639645 | None:intergenic | 20.0% |
| !! | GAAAAATAAACAAAAGACTT+GGG | - | chr4_1:51639821-51639840 | None:intergenic | 20.0% |
| !! | TGAAAAATAAACAAAAGACT+TGG | - | chr4_1:51639822-51639841 | None:intergenic | 20.0% |
| !! | TATTTAATCTTTGTTCTTGT+TGG | - | chr4_1:51640273-51640292 | None:intergenic | 20.0% |
| !! | TTCATATGTTTTCGGATTTT+TGG | + | chr4_1:51636891-51636910 | Msa0554400:CDS | 25.0% |
| !! | TTTGGAATTAGAAATTCCAA+TGG | + | chr4_1:51636909-51636928 | Msa0554400:CDS | 25.0% |
| !! | GATTGATAGGTAAGAAATTT+TGG | - | chr4_1:51636960-51636979 | None:intergenic | 25.0% |
| !! | ACACATATAAAGTACCATTA+TGG | - | chr4_1:51636995-51637014 | None:intergenic | 25.0% |
| ! | TTATGTGTCAAAGATTATGA+TGG | + | chr4_1:51637215-51637234 | Msa0554400:CDS | 25.0% |
| !! | ATCTTTAATCATTGAGCTTT+TGG | - | chr4_1:51637532-51637551 | None:intergenic | 25.0% |
| ! | CATATATAAATTTGCGATAG+AGG | - | chr4_1:51637679-51637698 | None:intergenic | 25.0% |
| !!! | GAGAGAGATATTGTTTTTTT+AGG | + | chr4_1:51637767-51637786 | Msa0554400:intron | 25.0% |
| !!! | AGAGATATTGTTTTTTTAGG+AGG | + | chr4_1:51637770-51637789 | Msa0554400:intron | 25.0% |
| !!! | ATATTGTTTTTTTAGGAGGT+GGG | + | chr4_1:51637774-51637793 | Msa0554400:intron | 25.0% |
| ! | AAGACTAGACATATTCTAAT+AGG | - | chr4_1:51637814-51637833 | None:intergenic | 25.0% |
| !!! | TTGAACATTTTGAAAAGTAC+GGG | + | chr4_1:51638122-51638141 | Msa0554400:intron | 25.0% |
| !!! | ATTTGGAATTCCTAACTTTT+AGG | + | chr4_1:51638186-51638205 | Msa0554400:intron | 25.0% |
| !! | AACTTCATTCTCATCATTTT+TGG | + | chr4_1:51638577-51638596 | Msa0554400:intron | 25.0% |
| !!! | AACTCTTTTTGAAAAGTTGA+GGG | + | chr4_1:51638874-51638893 | Msa0554400:intron | 25.0% |
| !! | TAGGGTCAATTTGAAAATTT+TGG | + | chr4_1:51638954-51638973 | Msa0554400:intron | 25.0% |
| ! | CCGAATAAAATGTATGAATT+TGG | - | chr4_1:51639327-51639346 | None:intergenic | 25.0% |
| ! | AAGCACAAAATATAATCAAG+AGG | + | chr4_1:51639700-51639719 | Msa0554400:CDS | 25.0% |
| !!! | TCACTGTTTTTCTTATTGAA+TGG | + | chr4_1:51639736-51639755 | Msa0554400:CDS | 25.0% |
| ! | TTGTCATATCCAATTTGATT+GGG | + | chr4_1:51639927-51639946 | Msa0554400:CDS | 25.0% |
| !!! | GTGACACATTTTTTTTTAAG+AGG | - | chr4_1:51640080-51640099 | None:intergenic | 25.0% |
| ! | TTAGAAATAACTTGATCACA+TGG | - | chr4_1:51640564-51640583 | None:intergenic | 25.0% |
| TTAGTCTCTACTTTCTAACA+CGG | + | chr4_1:51636783-51636802 | Msa0554400:five_prime_UTR | 30.0% | |
| TCCGAAAACATATGAACATA+GGG | - | chr4_1:51636887-51636906 | None:intergenic | 30.0% | |
| ATCCGAAAACATATGAACAT+AGG | - | chr4_1:51636888-51636907 | None:intergenic | 30.0% | |
| ! | CATATAAAGTACCATTATGG+AGG | - | chr4_1:51636992-51637011 | None:intergenic | 30.0% |
| AATGAAGTGGAAAAAAGTAG+AGG | + | chr4_1:51637113-51637132 | Msa0554400:CDS | 30.0% | |
| !! | GATTCACTTTTAGGGAATAT+TGG | - | chr4_1:51637165-51637184 | None:intergenic | 30.0% |
| ATTAAATGCATTTCCCAAAG+TGG | - | chr4_1:51637261-51637280 | None:intergenic | 30.0% | |
| CACTTGAAAAAACCTTTCTT+GGG | - | chr4_1:51637450-51637469 | None:intergenic | 30.0% | |
| ATCAGTGAAGGAATTGAAAA+GGG | - | chr4_1:51637493-51637512 | None:intergenic | 30.0% | |
| AATCAGTGAAGGAATTGAAA+AGG | - | chr4_1:51637494-51637513 | None:intergenic | 30.0% | |
| !!! | TTCAATTCCTTCACTGATTT+TGG | + | chr4_1:51637495-51637514 | Msa0554400:CDS | 30.0% |
| AAGATGACAAAACACCTATA+TGG | + | chr4_1:51637547-51637566 | Msa0554400:CDS | 30.0% | |
| TTTCATCAAGAGAGAATGAT+AGG | - | chr4_1:51637617-51637636 | None:intergenic | 30.0% | |
| !!! | GATATTGTTTTTTTAGGAGG+TGG | + | chr4_1:51637773-51637792 | Msa0554400:intron | 30.0% |
| !!! | TATTGTTTTTTTAGGAGGTG+GGG | + | chr4_1:51637775-51637794 | Msa0554400:intron | 30.0% |
| !! | TTAGAATATGTCTAGTCTTG+CGG | + | chr4_1:51637815-51637834 | Msa0554400:intron | 30.0% |
| AGTAGCCAAAATGTTAACAA+TGG | - | chr4_1:51637953-51637972 | None:intergenic | 30.0% | |
| !! | TGAACATTTTGAAAAGTACG+GGG | + | chr4_1:51638123-51638142 | Msa0554400:intron | 30.0% |
| TCAAATGACACCTAAAAGTT+AGG | - | chr4_1:51638199-51638218 | None:intergenic | 30.0% | |
| ! | GAGGTAATGTAATTTTTGCA+GGG | - | chr4_1:51638329-51638348 | None:intergenic | 30.0% |
| ! | TGAGGTAATGTAATTTTTGC+AGG | - | chr4_1:51638330-51638349 | None:intergenic | 30.0% |
| ! | TTGGATGAAAGAATGTTTTG+AGG | - | chr4_1:51638348-51638367 | None:intergenic | 30.0% |
| GAAATTTCTTAGAGTGTGTT+TGG | - | chr4_1:51638367-51638386 | None:intergenic | 30.0% | |
| ! | ACACACTCTAAGAAATTTCA+AGG | + | chr4_1:51638368-51638387 | Msa0554400:intron | 30.0% |
| ATGAATTTGTAGAGAAAAGG+AGG | - | chr4_1:51638809-51638828 | None:intergenic | 30.0% | |
| ! | TCCTTTTCTCTACAAATTCA+TGG | + | chr4_1:51638808-51638827 | Msa0554400:intron | 30.0% |
| ACCATGAATTTGTAGAGAAA+AGG | - | chr4_1:51638812-51638831 | None:intergenic | 30.0% | |
| !! | CAACTCTTTTTGAAAAGTTG+AGG | + | chr4_1:51638873-51638892 | Msa0554400:intron | 30.0% |
| !! | ACTCTTTTTGAAAAGTTGAG+GGG | + | chr4_1:51638875-51638894 | Msa0554400:intron | 30.0% |
| AACTCTCTCTCTAAATCTTA+TGG | + | chr4_1:51639224-51639243 | Msa0554400:intron | 30.0% | |
| ACAATAAATGATGTGATCAC+TGG | + | chr4_1:51639441-51639460 | Msa0554400:CDS | 30.0% | |
| CAATAAATGATGTGATCACT+GGG | + | chr4_1:51639442-51639461 | Msa0554400:CDS | 30.0% | |
| AATAAATGATGTGATCACTG+GGG | + | chr4_1:51639443-51639462 | Msa0554400:CDS | 30.0% | |
| AACATCAAATTCAACAGGAT+TGG | + | chr4_1:51639518-51639537 | Msa0554400:CDS | 30.0% | |
| TTGTCATATCTTGGATTGAT+TGG | - | chr4_1:51639575-51639594 | None:intergenic | 30.0% | |
| ATCAATCCAAGATATGACAA+AGG | + | chr4_1:51639575-51639594 | Msa0554400:CDS | 30.0% | |
| TATTGAATGGCTCTTAGATA+TGG | + | chr4_1:51639749-51639768 | Msa0554400:CDS | 30.0% | |
| TTGCTATAAACATGTGTTGT+AGG | + | chr4_1:51639862-51639881 | Msa0554400:intron | 30.0% | |
| GTTGTCATATCCAATTTGAT+TGG | + | chr4_1:51639926-51639945 | Msa0554400:CDS | 30.0% | |
| TGTTATAGTAACATGAGAGA+AGG | - | chr4_1:51640056-51640075 | None:intergenic | 30.0% | |
| CTATAACATGTTATCCTTTG+TGG | + | chr4_1:51640099-51640118 | Msa0554400:intron | 30.0% | |
| ACTATCTATAAAGAAGCAGA+AGG | + | chr4_1:51640294-51640313 | Msa0554400:three_prime_UTR | 30.0% | |
| CTATCTATAAAGAAGCAGAA+GGG | + | chr4_1:51640295-51640314 | Msa0554400:three_prime_UTR | 30.0% | |
| ! | TTGTCAAGTTTAGTTTCTGT+TGG | + | chr4_1:51640360-51640379 | Msa0554400:three_prime_UTR | 30.0% |
| TTAACCTTCTATATATAGCG+CGG | + | chr4_1:51640499-51640518 | Msa0554400:three_prime_UTR | 30.0% | |
| GTATTGAAGAATTGTCCACT+TGG | - | chr4_1:51636859-51636878 | None:intergenic | 35.0% | |
| AAAACATATGAACATAGGGG+TGG | - | chr4_1:51636883-51636902 | None:intergenic | 35.0% | |
| CCGAAAACATATGAACATAG+GGG | - | chr4_1:51636886-51636905 | None:intergenic | 35.0% | |
| ! | CCCCTATGTTCATATGTTTT+CGG | + | chr4_1:51636883-51636902 | Msa0554400:CDS | 35.0% |
| GGAATATTGGAACCTTCATA+TGG | - | chr4_1:51637152-51637171 | None:intergenic | 35.0% | |
| GAAAAGACAAAGGAAGAGAA+GGG | - | chr4_1:51637398-51637417 | None:intergenic | 35.0% | |
| TTGGGAGATAACAATTGTGA+TGG | - | chr4_1:51637432-51637451 | None:intergenic | 35.0% | |
| CAATTGTTATCTCCCAAGAA+AGG | + | chr4_1:51637435-51637454 | Msa0554400:CDS | 35.0% | |
| CCACTTGAAAAAACCTTTCT+TGG | - | chr4_1:51637451-51637470 | None:intergenic | 35.0% | |
| !!! | CCAAGAAAGGTTTTTTCAAG+TGG | + | chr4_1:51637448-51637467 | Msa0554400:CDS | 35.0% |
| TCAGTGAAGGAATTGAAAAG+GGG | - | chr4_1:51637492-51637511 | None:intergenic | 35.0% | |
| !!! | ATTCCTTCACTGATTTTGGA+TGG | + | chr4_1:51637499-51637518 | Msa0554400:CDS | 35.0% |
| GACAAAACACCTATATGGAA+TGG | + | chr4_1:51637552-51637571 | Msa0554400:CDS | 35.0% | |
| ! | GATAGGTTTGATAGTACACA+AGG | - | chr4_1:51637600-51637619 | None:intergenic | 35.0% |
| AAAACGATCAAGTCTAAGCT+TGG | + | chr4_1:51637639-51637658 | Msa0554400:CDS | 35.0% | |
| CATTTCTAAATGTCTTCGCT+TGG | + | chr4_1:51637911-51637930 | Msa0554400:intron | 35.0% | |
| GTAACAAGAAGGGAGAAATT+TGG | + | chr4_1:51638169-51638188 | Msa0554400:intron | 35.0% | |
| ! | GTATTGACAGAAAAGAGAGA+AGG | - | chr4_1:51638787-51638806 | None:intergenic | 35.0% |
| !!! | TTGGATAGGAGAGTGTTTTA+AGG | - | chr4_1:51639163-51639182 | None:intergenic | 35.0% |
| TATCAAACCGTTAGTGTGTT+TGG | - | chr4_1:51639182-51639201 | None:intergenic | 35.0% | |
| TCCAAGTTCATACATATTGC+TGG | + | chr4_1:51639285-51639304 | Msa0554400:intron | 35.0% | |
| CCAAGTTCATACATATTGCT+GGG | + | chr4_1:51639286-51639305 | Msa0554400:intron | 35.0% | |
| ! | ATCACTGGGGTAATTTTCTA+TGG | + | chr4_1:51639456-51639475 | Msa0554400:CDS | 35.0% |
| ! | TCACTGGGGTAATTTTCTAT+GGG | + | chr4_1:51639457-51639476 | Msa0554400:CDS | 35.0% |
| ! | GGGTAATTTTCTATGGGATT+AGG | + | chr4_1:51639463-51639482 | Msa0554400:CDS | 35.0% |
| CATGCAAGAGATTGACAATA+AGG | + | chr4_1:51639491-51639510 | Msa0554400:CDS | 35.0% | |
| GCAAGAACATCAAATTCAAC+AGG | + | chr4_1:51639513-51639532 | Msa0554400:CDS | 35.0% | |
| AATCAGCCTTTGTCATATCT+TGG | - | chr4_1:51639584-51639603 | None:intergenic | 35.0% | |
| ! | CAAATTCTAAGGGGTTAGAT+AGG | - | chr4_1:51639674-51639693 | None:intergenic | 35.0% |
| CTTTCCAGACAAATTCTAAG+GGG | - | chr4_1:51639683-51639702 | None:intergenic | 35.0% | |
| GCTTTCCAGACAAATTCTAA+GGG | - | chr4_1:51639684-51639703 | None:intergenic | 35.0% | |
| TGCTTTCCAGACAAATTCTA+AGG | - | chr4_1:51639685-51639704 | None:intergenic | 35.0% | |
| GATATGGAGCTGAAATTAAG+AGG | + | chr4_1:51639765-51639784 | Msa0554400:CDS | 35.0% | |
| AAATTAAGAGGACATGAGGT+GGG | + | chr4_1:51639777-51639796 | Msa0554400:intron | 35.0% | |
| GCAGTTGCTAAACATATCTA+TGG | + | chr4_1:51639884-51639903 | Msa0554400:CDS | 35.0% | |
| TTGTACTTTACAATGACAGG+TGG | + | chr4_1:51639992-51640011 | Msa0554400:CDS | 35.0% | |
| CAACTTGAGAGTTAAGATGA+TGG | - | chr4_1:51640029-51640048 | None:intergenic | 35.0% | |
| CATCATCTTAACTCTCAAGT+TGG | + | chr4_1:51640027-51640046 | Msa0554400:intron | 35.0% | |
| TTTATACTCTGCAACCACAA+AGG | - | chr4_1:51640116-51640135 | None:intergenic | 35.0% | |
| TAATCCGCGCTATATATAGA+AGG | - | chr4_1:51640506-51640525 | None:intergenic | 35.0% | |
| CGGATTATGCTAACAAACTA+CGG | + | chr4_1:51640519-51640538 | Msa0554400:three_prime_UTR | 35.0% | |
| TTGATCACATGGTTTCTTGT+TGG | - | chr4_1:51640553-51640572 | None:intergenic | 35.0% | |
| CACGGTGCATAGTACTAAAA+TGG | + | chr4_1:51636801-51636820 | Msa0554400:exon | 40.0% | |
| AATTGTCCACTTGGACTTAC+TGG | - | chr4_1:51636850-51636869 | None:intergenic | 40.0% | |
| ATAGTTTGAGAGTCGTCCAT+TGG | - | chr4_1:51636928-51636947 | None:intergenic | 40.0% | |
| ATATAGGTGAGAGACCAAGA+TGG | + | chr4_1:51637087-51637106 | Msa0554400:intron | 40.0% | |
| ACCAAGATGGCAAAATGAAG+TGG | + | chr4_1:51637100-51637119 | Msa0554400:CDS | 40.0% | |
| ! | TCCACTTCATTTTGCCATCT+TGG | - | chr4_1:51637104-51637123 | None:intergenic | 40.0% |
| ACCACAAGACAAACCACTTT+GGG | + | chr4_1:51637245-51637264 | Msa0554400:CDS | 40.0% | |
| TATCCAACAAGCAATGCTGA+AGG | + | chr4_1:51637285-51637304 | Msa0554400:CDS | 40.0% | |
| TTCAAACTTCACCATGCACT+TGG | + | chr4_1:51637318-51637337 | Msa0554400:CDS | 40.0% | |
| GGAAAAGACAAAGGAAGAGA+AGG | - | chr4_1:51637399-51637418 | None:intergenic | 40.0% | |
| TTGCGTGAAGGAAAAGACAA+AGG | - | chr4_1:51637408-51637427 | None:intergenic | 40.0% | |
| ! | AATTGTGATGGTTTGCGTGA+AGG | - | chr4_1:51637420-51637439 | None:intergenic | 40.0% |
| AAAGGGGGAATATGGTTGAA+GGG | - | chr4_1:51637476-51637495 | None:intergenic | 40.0% | |
| AAAAGGGGGAATATGGTTGA+AGG | - | chr4_1:51637477-51637496 | None:intergenic | 40.0% | |
| GGAATTGAAAAGGGGGAATA+TGG | - | chr4_1:51637484-51637503 | None:intergenic | 40.0% | |
| CAGTGAAGGAATTGAAAAGG+GGG | - | chr4_1:51637491-51637510 | None:intergenic | 40.0% | |
| AACACCTATATGGAATGGTG+AGG | + | chr4_1:51637557-51637576 | Msa0554400:CDS | 40.0% | |
| GATCCTTTATCGCTGTAGTA+TGG | + | chr4_1:51637717-51637736 | Msa0554400:intron | 40.0% | |
| !!! | AGAGAGGACTGGTTTTTGAA+CGG | - | chr4_1:51638405-51638424 | None:intergenic | 40.0% |
| ! | TCTATACCGAAGAGTGTGTT+TGG | + | chr4_1:51638422-51638441 | Msa0554400:intron | 40.0% |
| CATCATCCAAACACACTCTT+CGG | - | chr4_1:51638431-51638450 | None:intergenic | 40.0% | |
| !!! | GCAAAGTGACCCCTATTTTT+TGG | - | chr4_1:51638916-51638935 | None:intergenic | 40.0% |
| !!! | GGGGTCACTTTGCAATTTTT+TGG | + | chr4_1:51638923-51638942 | Msa0554400:intron | 40.0% |
| CTCCTATCCAAACACACTAA+CGG | + | chr4_1:51639172-51639191 | Msa0554400:intron | 40.0% | |
| AACCGTTAGTGTGTTTGGAT+AGG | - | chr4_1:51639177-51639196 | None:intergenic | 40.0% | |
| CCCAGCAATATGTATGAACT+TGG | - | chr4_1:51639289-51639308 | None:intergenic | 40.0% | |
| TTGCTTAGTACCAGGAACAT+TGG | + | chr4_1:51639543-51639562 | Msa0554400:CDS | 40.0% | |
| ! | TTGGTAACTTCCAATGTTCC+TGG | - | chr4_1:51639556-51639575 | None:intergenic | 40.0% |
| ! | AGGCTGATTCAAAATCTCCT+TGG | + | chr4_1:51639595-51639614 | Msa0554400:CDS | 40.0% |
| ! | GGCTGATTCAAAATCTCCTT+GGG | + | chr4_1:51639596-51639615 | Msa0554400:CDS | 40.0% |
| ! | GCTGATTCAAAATCTCCTTG+GGG | + | chr4_1:51639597-51639616 | Msa0554400:CDS | 40.0% |
| CTGATTCAAAATCTCCTTGG+GGG | + | chr4_1:51639598-51639617 | Msa0554400:CDS | 40.0% | |
| AAAGAAATATGGTTCCCCCA+AGG | - | chr4_1:51639615-51639634 | None:intergenic | 40.0% | |
| CTAACCCCTTAGAATTTGTC+TGG | + | chr4_1:51639676-51639695 | Msa0554400:CDS | 40.0% | |
| GCTGAAATTAAGAGGACATG+AGG | + | chr4_1:51639773-51639792 | Msa0554400:CDS | 40.0% | |
| GAAATTAAGAGGACATGAGG+TGG | + | chr4_1:51639776-51639795 | Msa0554400:intron | 40.0% | |
| GTAAAGTACAAGCCTTTCAC+AGG | - | chr4_1:51639983-51640002 | None:intergenic | 40.0% | |
| GGCTTGTACTTTACAATGAC+AGG | + | chr4_1:51639989-51640008 | Msa0554400:CDS | 40.0% | |
| ! | GTTAAGATGATGGTTACCTC+AGG | - | chr4_1:51640019-51640038 | None:intergenic | 40.0% |
| TATAAAGAAGCAGAAGGGCA+TGG | + | chr4_1:51640300-51640319 | Msa0554400:three_prime_UTR | 40.0% | |
| ! | ATAAAGAAGCAGAAGGGCAT+GGG | + | chr4_1:51640301-51640320 | Msa0554400:three_prime_UTR | 40.0% |
| CTTTCAGTGTGAGTTTGAAG+AGG | + | chr4_1:51640327-51640346 | Msa0554400:three_prime_UTR | 40.0% | |
| GCTAACAAACTACGGTTACT+TGG | + | chr4_1:51640527-51640546 | Msa0554400:three_prime_UTR | 40.0% | |
| ! | TGGCTCTGTCACATCTTCAA+AGG | - | chr4_1:51636830-51636849 | None:intergenic | 45.0% |
| GCAGCTTGAAGACCATATGA+AGG | + | chr4_1:51637137-51637156 | Msa0554400:CDS | 45.0% | |
| CACCACAAGACAAACCACTT+TGG | + | chr4_1:51637244-51637263 | Msa0554400:CDS | 45.0% | |
| ! | TCCCAAAGTGGTTTGTCTTG+TGG | - | chr4_1:51637249-51637268 | None:intergenic | 45.0% |
| GTTCCTTCAGCATTGCTTGT+TGG | - | chr4_1:51637291-51637310 | None:intergenic | 45.0% | |
| AGTAACCATCACCAAGTGCA+TGG | - | chr4_1:51637332-51637351 | None:intergenic | 45.0% | |
| !! | TGGTGATGGTTACTCTCTCA+TGG | + | chr4_1:51637338-51637357 | Msa0554400:CDS | 45.0% |
| ! | GGTGATGGTTACTCTCTCAT+GGG | + | chr4_1:51637339-51637358 | Msa0554400:CDS | 45.0% |
| GCTCCATCCAAAATCAGTGA+AGG | - | chr4_1:51637505-51637524 | None:intergenic | 45.0% | |
| CCTTCCTCACCATTCCATAT+AGG | - | chr4_1:51637564-51637583 | None:intergenic | 45.0% | |
| CCTATATGGAATGGTGAGGA+AGG | + | chr4_1:51637561-51637580 | Msa0554400:CDS | 45.0% | |
| GATCAAGTCTAAGCTTGGAG+TGG | + | chr4_1:51637644-51637663 | Msa0554400:CDS | 45.0% | |
| GCACCATACTACAGCGATAA+AGG | - | chr4_1:51637723-51637742 | None:intergenic | 45.0% | |
| ACACACTCTTCGGTATAGAG+AGG | - | chr4_1:51638421-51638440 | None:intergenic | 45.0% | |
| !! | GATTGGTGTTGCTTAGTACC+AGG | + | chr4_1:51639535-51639554 | Msa0554400:CDS | 45.0% |
| ! | TTCTAAGGGGTTAGATAGGC+TGG | - | chr4_1:51639670-51639689 | None:intergenic | 45.0% |
| ATCCAATTTGATTGGGCCAG+TGG | + | chr4_1:51639934-51639953 | Msa0554400:CDS | 45.0% | |
| TTCCACTGGCCCAATCAAAT+TGG | - | chr4_1:51639939-51639958 | None:intergenic | 45.0% | |
| TTGGCAAACCATCCTGTGAA+AGG | + | chr4_1:51639968-51639987 | Msa0554400:CDS | 45.0% | |
| AGTACAAGCCTTTCACAGGA+TGG | - | chr4_1:51639979-51639998 | None:intergenic | 45.0% | |
| GTGCATAGTAAGAGCCTTTG+AGG | + | chr4_1:51640220-51640239 | Msa0554400:CDS | 45.0% | |
| !! | AGCCTTTGAGGTCATATCCA+AGG | + | chr4_1:51640232-51640251 | Msa0554400:CDS | 45.0% |
| TGCCTTGGATATGACCTCAA+AGG | - | chr4_1:51640237-51640256 | None:intergenic | 45.0% | |
| GGTCATATCCAAGGCAGTAA+TGG | + | chr4_1:51640241-51640260 | Msa0554400:CDS | 45.0% | |
| GGAAATCTCCATTACTGCCT+TGG | - | chr4_1:51640252-51640271 | None:intergenic | 45.0% | |
| !!! | TTTTAGAAAAATTATTTTTT+AGG | + | chr4_1:51637972-51637991 | Msa0554400:intron | 5.0% |
| !!! | TTTAGAAAAATTATTTTTTA+GGG | + | chr4_1:51637973-51637992 | Msa0554400:intron | 5.0% |
| !!! | TTATATTTTTTTGAAAATTT+TGG | + | chr4_1:51638031-51638050 | Msa0554400:intron | 5.0% |
| !!! | TATATTTTTTTGAAAATTTT+GGG | + | chr4_1:51638032-51638051 | Msa0554400:intron | 5.0% |
| !!! | TTTGTATTTTTTTTTTTTTT+TGG | + | chr4_1:51639410-51639429 | Msa0554400:intron | 5.0% |
| ACAGAGCCAGTAAGTCCAAG+TGG | + | chr4_1:51636841-51636860 | Msa0554400:CDS | 50.0% | |
| ! | GAGGAGAAGCGTGGATTGAT+AGG | - | chr4_1:51636973-51636992 | None:intergenic | 50.0% |
| TCCACGCTTCTCCTCCATAA+TGG | + | chr4_1:51636978-51636997 | Msa0554400:CDS | 50.0% | |
| ACCATTATGGAGGAGAAGCG+TGG | - | chr4_1:51636982-51637001 | None:intergenic | 50.0% | |
| ! | CTTCACCATGCACTTGGTGA+TGG | + | chr4_1:51637324-51637343 | Msa0554400:CDS | 50.0% |
| CTCTTCGGTATAGAGAGGAC+TGG | - | chr4_1:51638416-51638435 | None:intergenic | 50.0% | |
| GCTGCATCACCATATTGCAG+CGG | + | chr4_1:51639255-51639274 | Msa0554400:intron | 50.0% | |
| TCACCATATTGCAGCGGTAG+AGG | + | chr4_1:51639261-51639280 | Msa0554400:intron | 50.0% | |
| GATCCTCTACCGCTGCAATA+TGG | - | chr4_1:51639267-51639286 | None:intergenic | 50.0% | |
| !! | GCTTGGCACAACTTTGGGAT+TGG | - | chr4_1:51639648-51639667 | None:intergenic | 50.0% |
| ! | GGATGGTTTGCCAAAGCCAT+AGG | - | chr4_1:51639962-51639981 | None:intergenic | 50.0% |
| TACAATGACAGGTGGACCTG+AGG | + | chr4_1:51640000-51640019 | Msa0554400:CDS | 50.0% | |
| !! | GGCTGGCTTGGCACAACTTT+GGG | - | chr4_1:51639653-51639672 | None:intergenic | 55.0% |
| !! | AGGCTGGCTTGGCACAACTT+TGG | - | chr4_1:51639654-51639673 | None:intergenic | 55.0% |
| ! | AGGGGTTAGATAGGCTGGCT+TGG | - | chr4_1:51639665-51639684 | None:intergenic | 55.0% |
| GATTGGGCCAGTGGAACCTA+TGG | + | chr4_1:51639943-51639962 | Msa0554400:CDS | 55.0% | |
| GCCAGTGGAACCTATGGCTT+TGG | + | chr4_1:51639949-51639968 | Msa0554400:CDS | 55.0% | |
| GCCAAAGCCATAGGTTCCAC+TGG | - | chr4_1:51639953-51639972 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 51636756 | 51640665 | 51636756 | ID=Msa0554400;Name=Msa0554400 |
| chr4_1 | mRNA | 51636756 | 51640665 | 51636756 | ID=Msa0554400-mRNA-1;Parent=Msa0554400;Name=Msa0554400-mRNA-1;_AED=0.41;_eAED=0.41;_QI=64|1|1|1|1|1|5|376|468 |
| chr4_1 | exon | 51636756 | 51636999 | 51636756 | ID=Msa0554400-mRNA-1:exon:14838;Parent=Msa0554400-mRNA-1 |
| chr4_1 | exon | 51637093 | 51637665 | 51637093 | ID=Msa0554400-mRNA-1:exon:14839;Parent=Msa0554400-mRNA-1 |
| chr4_1 | exon | 51639441 | 51639794 | 51639441 | ID=Msa0554400-mRNA-1:exon:14840;Parent=Msa0554400-mRNA-1 |
| chr4_1 | exon | 51639884 | 51640021 | 51639884 | ID=Msa0554400-mRNA-1:exon:14841;Parent=Msa0554400-mRNA-1 |
| chr4_1 | exon | 51640128 | 51640665 | 51640128 | ID=Msa0554400-mRNA-1:exon:14842;Parent=Msa0554400-mRNA-1 |
| chr4_1 | five_prime_UTR | 51636756 | 51636819 | 51636756 | ID=Msa0554400-mRNA-1:five_prime_utr;Parent=Msa0554400-mRNA-1 |
| chr4_1 | CDS | 51636820 | 51636999 | 51636820 | ID=Msa0554400-mRNA-1:cds;Parent=Msa0554400-mRNA-1 |
| chr4_1 | CDS | 51637093 | 51637665 | 51637093 | ID=Msa0554400-mRNA-1:cds;Parent=Msa0554400-mRNA-1 |
| chr4_1 | CDS | 51639441 | 51639794 | 51639441 | ID=Msa0554400-mRNA-1:cds;Parent=Msa0554400-mRNA-1 |
| chr4_1 | CDS | 51639884 | 51640021 | 51639884 | ID=Msa0554400-mRNA-1:cds;Parent=Msa0554400-mRNA-1 |
| chr4_1 | CDS | 51640128 | 51640289 | 51640128 | ID=Msa0554400-mRNA-1:cds;Parent=Msa0554400-mRNA-1 |
| chr4_1 | three_prime_UTR | 51640290 | 51640665 | 51640290 | ID=Msa0554400-mRNA-1:three_prime_utr;Parent=Msa0554400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
