Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648150 | XP_003607481.2 | 96.154 | 468 | 18 | 0 | 1 | 468 | 1 | 468 | 0.0 | 931 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648150 | sp|Q5KS41|WSD11_ARATH | 28.541 | 473 | 309 | 9 | 9 | 461 | 15 | 478 | 6.55e-58 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0648150 | Msa0648250 | 0.963766 | 1.728048e-122 | -8.615850e-47 |
| Msa0648150 | Msa0691190 | 0.941576 | 3.271274e-101 | -8.615850e-47 |
| Msa0648150 | Msa0752580 | 0.803973 | 2.699144e-49 | -8.615850e-47 |
| Msa0648150 | Msa0754500 | 0.802210 | 6.251970e-49 | -8.615850e-47 |
| Msa0648150 | Msa1009150 | 0.808999 | 2.349771e-50 | -8.615850e-47 |
| Msa0648150 | Msa1098350 | 0.805533 | 1.274730e-49 | -8.615850e-47 |
| Msa0648150 | Msa1135660 | 0.813872 | 2.054382e-51 | -8.615850e-47 |
| Msa0648150 | Msa1138480 | 0.802205 | 6.265376e-49 | -8.615850e-47 |
| Msa0648150 | Msa1178000 | 0.805585 | 1.243254e-49 | -8.615850e-47 |
| Msa0648150 | Msa1237830 | 0.816457 | 5.475570e-52 | -8.615850e-47 |
| Msa0648150 | Msa1278850 | 0.833632 | 4.770531e-56 | -8.615850e-47 |
| Msa0648150 | Msa1296650 | 0.812749 | 3.624355e-51 | -8.615850e-47 |
| Msa0648150 | Msa1318250 | 0.813609 | 2.347125e-51 | -8.615850e-47 |
| Msa0151860 | Msa0648150 | 0.804192 | 2.430208e-49 | -8.615850e-47 |
| Msa0391080 | Msa0648150 | 0.802791 | 4.745012e-49 | -8.615850e-47 |
| Msa0363440 | Msa0648150 | 0.808903 | 2.463543e-50 | -8.615850e-47 |
| Msa0554400 | Msa0648150 | 0.992477 | 1.594993e-193 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648150 | MtrunA17_Chr4g0040261 | 92.657 | 463 | 33 | 1 | 1 | 462 | 34 | 496 | 0.0 | 870 |
| Msa0648150 | MtrunA17_Chr4g0040271 | 96.411 | 418 | 15 | 0 | 1 | 418 | 1 | 418 | 0.0 | 839 |
| Msa0648150 | MtrunA17_Chr4g0040251 | 84.861 | 469 | 69 | 2 | 1 | 467 | 1 | 469 | 0.0 | 828 |
| Msa0648150 | MtrunA17_Chr4g0040221 | 68.094 | 467 | 142 | 4 | 1 | 463 | 1 | 464 | 0.0 | 628 |
| Msa0648150 | MtrunA17_Chr4g0040231 | 62.099 | 467 | 168 | 4 | 4 | 463 | 5 | 469 | 0.0 | 595 |
| Msa0648150 | MtrunA17_Chr4g0040001 | 63.248 | 468 | 164 | 5 | 1 | 461 | 1 | 467 | 0.0 | 588 |
| Msa0648150 | MtrunA17_Chr7g0217051 | 59.565 | 460 | 184 | 2 | 5 | 462 | 7 | 466 | 0.0 | 581 |
| Msa0648150 | MtrunA17_Chr4g0040011 | 63.341 | 431 | 150 | 5 | 1 | 424 | 9 | 438 | 0.0 | 542 |
| Msa0648150 | MtrunA17_Chr7g0248011 | 51.327 | 452 | 218 | 2 | 5 | 455 | 7 | 457 | 6.24e-164 | 471 |
| Msa0648150 | MtrunA17_Chr6g0457271 | 57.103 | 359 | 148 | 5 | 63 | 416 | 2 | 359 | 6.56e-145 | 419 |
| Msa0648150 | MtrunA17_Chr6g0457281 | 52.577 | 291 | 132 | 3 | 85 | 370 | 1 | 290 | 1.42e-107 | 321 |
| Msa0648150 | MtrunA17_Chr1g0147071 | 27.155 | 464 | 307 | 11 | 5 | 447 | 6 | 459 | 8.55e-49 | 174 |
| Msa0648150 | MtrunA17_Chr5g0393471 | 27.612 | 268 | 186 | 5 | 189 | 453 | 65 | 327 | 5.92e-24 | 102 |
| Msa0648150 | MtrunA17_Chr6g0457291 | 51.351 | 74 | 36 | 0 | 393 | 466 | 1 | 74 | 2.74e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648150 | AT5G53390.1 | 28.541 | 473 | 309 | 9 | 9 | 461 | 15 | 478 | 6.66e-59 | 201 |
| Msa0648150 | AT5G12420.1 | 28.788 | 462 | 298 | 8 | 9 | 447 | 7 | 460 | 2.63e-58 | 199 |
| Msa0648150 | AT3G49190.1 | 28.755 | 466 | 296 | 8 | 9 | 447 | 18 | 474 | 4.48e-58 | 200 |
| Msa0648150 | AT5G12420.2 | 29.426 | 418 | 265 | 7 | 9 | 403 | 7 | 417 | 1.93e-55 | 192 |
| Msa0648150 | AT5G16350.3 | 29.111 | 450 | 294 | 13 | 9 | 447 | 7 | 442 | 4.25e-53 | 185 |
| Msa0648150 | AT3G49210.1 | 27.968 | 497 | 317 | 10 | 9 | 468 | 26 | 518 | 3.29e-52 | 184 |
| Msa0648150 | AT3G49200.1 | 28.480 | 467 | 300 | 11 | 9 | 447 | 26 | 486 | 8.21e-52 | 183 |
| Msa0648150 | AT5G22490.1 | 29.247 | 465 | 284 | 15 | 10 | 447 | 12 | 458 | 9.18e-52 | 182 |
| Msa0648150 | AT1G72110.1 | 28.238 | 471 | 309 | 12 | 6 | 458 | 9 | 468 | 1.76e-51 | 181 |
| Msa0648150 | AT5G16350.1 | 27.623 | 467 | 299 | 12 | 9 | 447 | 7 | 462 | 6.69e-51 | 180 |
| Msa0648150 | AT2G38995.2 | 28.602 | 472 | 305 | 13 | 9 | 461 | 21 | 479 | 4.15e-49 | 175 |
| Msa0648150 | AT5G53380.1 | 26.432 | 454 | 300 | 8 | 9 | 439 | 9 | 451 | 3.13e-48 | 172 |
| Msa0648150 | AT5G37300.1 | 29.449 | 472 | 293 | 15 | 9 | 458 | 17 | 470 | 1.01e-47 | 171 |
| Msa0648150 | AT5G37300.4 | 29.449 | 472 | 293 | 15 | 9 | 458 | 35 | 488 | 1.39e-47 | 171 |
| Msa0648150 | AT1G72110.2 | 27.696 | 473 | 300 | 14 | 6 | 458 | 9 | 459 | 1.01e-46 | 168 |
| Msa0648150 | AT2G38995.3 | 28.947 | 418 | 263 | 14 | 64 | 461 | 7 | 410 | 2.48e-42 | 155 |
| Msa0648150 | AT5G16350.2 | 28.165 | 387 | 240 | 11 | 9 | 367 | 7 | 383 | 2.66e-42 | 155 |
| Msa0648150 | AT5G22490.2 | 29.870 | 385 | 227 | 14 | 10 | 367 | 12 | 380 | 1.07e-40 | 150 |
| Msa0648150 | AT3G49210.2 | 28.534 | 382 | 233 | 9 | 9 | 354 | 26 | 403 | 3.27e-40 | 150 |
| Msa0648150 | AT2G38995.4 | 29.600 | 375 | 232 | 13 | 64 | 420 | 7 | 367 | 3.22e-38 | 143 |
| Msa0648150 | AT5G37300.2 | 29.521 | 376 | 234 | 11 | 9 | 367 | 35 | 396 | 6.08e-36 | 137 |
| Msa0648150 | AT5G37300.3 | 31.461 | 267 | 169 | 8 | 9 | 269 | 35 | 293 | 1.21e-27 | 113 |
| Msa0648150 | AT2G38995.1 | 23.423 | 222 | 155 | 4 | 251 | 461 | 72 | 289 | 3.41e-13 | 70.5 |
| Msa0648150 | AT2G43255.1 | 25.397 | 189 | 129 | 5 | 283 | 466 | 33 | 214 | 2.23e-11 | 63.9 |
| Msa0648150 | AT2G43255.2 | 25.397 | 189 | 129 | 5 | 283 | 466 | 34 | 215 | 2.71e-11 | 63.5 |
Find 122 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTCCTTCACTGATTT+TGG | 0.094141 | 4_3:+54569452 | Msa0648150:CDS |
| GATTGATAGGTAAGAAATTT+TGG | 0.167979 | 4_3:-54568914 | None:intergenic |
| ATCTTTAATCATTGAGCTTT+TGG | 0.190332 | 4_3:-54569486 | None:intergenic |
| AATTGTCCACTTGGACTTAC+TGG | 0.240549 | 4_3:-54568804 | None:intergenic |
| TGCTTTCCAGACAAATTCTA+AGG | 0.254620 | 4_3:-54571639 | None:intergenic |
| TAAATAAGATTGAGTTAATA+AGG | 0.260439 | 4_3:-54572544 | None:intergenic |
| CACGGTGCATAGTACTAAAA+TGG | 0.269930 | 4_3:+54568758 | Msa0648150:exon |
| GGCTGGCTTGGCACAACTTT+GGG | 0.276206 | 4_3:-54571607 | None:intergenic |
| TATTTAATCTTTGTTCTTGT+TGG | 0.288350 | 4_3:-54572227 | None:intergenic |
| TATTGAATGGCTCTTAGATA+TGG | 0.311951 | 4_3:+54571706 | Msa0648150:CDS |
| AATCAGCCTTTGTCATATCT+TGG | 0.336966 | 4_3:-54571538 | None:intergenic |
| TTCCACTGGCCCAATCAAAT+TGG | 0.339045 | 4_3:-54571893 | None:intergenic |
| AAGATGACAAAACACCTATA+TGG | 0.354141 | 4_3:+54569504 | Msa0648150:CDS |
| TTGTCATATCTTGGATTGAT+TGG | 0.356004 | 4_3:-54571529 | None:intergenic |
| CATGCAAGAGATTGACAATA+AGG | 0.360961 | 4_3:+54571448 | Msa0648150:CDS |
| ACACATATAAAGTACCATTA+TGG | 0.364656 | 4_3:-54568949 | None:intergenic |
| TTGGTAACTTCCAATGTTCC+TGG | 0.365297 | 4_3:-54571510 | None:intergenic |
| GGCTGATTCAAAATCTCCTT+GGG | 0.370234 | 4_3:+54571553 | Msa0648150:CDS |
| GCTAACAAACTACGGTTACT+TGG | 0.370658 | 4_3:+54572484 | Msa0648150:three_prime_UTR |
| TTTCATCAAGAGAGAATGAT+AGG | 0.372720 | 4_3:-54569571 | None:intergenic |
| GTTCCTTCAGCATTGCTTGT+TGG | 0.387997 | 4_3:-54569245 | None:intergenic |
| AGGCTGGCTTGGCACAACTT+TGG | 0.391874 | 4_3:-54571608 | None:intergenic |
| CTAACCCCTTAGAATTTGTC+TGG | 0.400986 | 4_3:+54571633 | Msa0648150:CDS |
| GCCAGTGGAACCTATGGCTT+TGG | 0.408139 | 4_3:+54571906 | Msa0648150:CDS |
| GCAGTTGCTAAACATATCTA+TGG | 0.414646 | 4_3:+54571841 | Msa0648150:CDS |
| ACCACAAGACAAACCACTTT+GGG | 0.414710 | 4_3:+54569202 | Msa0648150:CDS |
| TCCACGCTTCTCCTCCATAA+TGG | 0.415488 | 4_3:+54568935 | Msa0648150:CDS |
| GCTTGGCACAACTTTGGGAT+TGG | 0.421008 | 4_3:-54571602 | None:intergenic |
| TTCTAAGGGGTTAGATAGGC+TGG | 0.423278 | 4_3:-54571624 | None:intergenic |
| AGGCTGATTCAAAATCTCCT+TGG | 0.423311 | 4_3:+54571552 | Msa0648150:CDS |
| GAGGAGAAGCGTGGATTGAT+AGG | 0.424660 | 4_3:-54568927 | None:intergenic |
| GTTGTCATATCCAATTTGAT+TGG | 0.424756 | 4_3:+54571883 | Msa0648150:CDS |
| GTATATGTAAGAAAGAAATA+TGG | 0.427920 | 4_3:-54571580 | None:intergenic |
| GGAAATCTCCATTACTGCCT+TGG | 0.431427 | 4_3:-54572206 | None:intergenic |
| TTGATCACATGGTTTCTTGT+TGG | 0.431534 | 4_3:-54572507 | None:intergenic |
| GGAATATTGGAACCTTCATA+TGG | 0.433653 | 4_3:-54569106 | None:intergenic |
| CAAATTCTAAGGGGTTAGAT+AGG | 0.434322 | 4_3:-54571628 | None:intergenic |
| TTGTCATATCCAATTTGATT+GGG | 0.434336 | 4_3:+54571884 | Msa0648150:CDS |
| ATCAGTGAAGGAATTGAAAA+GGG | 0.435338 | 4_3:-54569447 | None:intergenic |
| CCTTCCTCACCATTCCATAT+AGG | 0.442303 | 4_3:-54569518 | None:intergenic |
| GTGCATAGTAAGAGCCTTTG+AGG | 0.443190 | 4_3:+54572177 | Msa0648150:CDS |
| AATCAGTGAAGGAATTGAAA+AGG | 0.445410 | 4_3:-54569448 | None:intergenic |
| TGGTGATGGTTACTCTCTCA+TGG | 0.446072 | 4_3:+54569295 | Msa0648150:CDS |
| GCAAGAACATCAAATTCAAC+AGG | 0.450264 | 4_3:+54571470 | Msa0648150:CDS |
| AAAGAATGAAAACTTGTCTC+TGG | 0.452505 | 4_3:-54568700 | None:intergenic |
| GGCTTGTACTTTACAATGAC+AGG | 0.453421 | 4_3:+54571946 | Msa0648150:CDS |
| TCCGAAAACATATGAACATA+GGG | 0.457117 | 4_3:-54568841 | None:intergenic |
| GATTGGGCCAGTGGAACCTA+TGG | 0.464336 | 4_3:+54571900 | Msa0648150:CDS |
| CACCACAAGACAAACCACTT+TGG | 0.467869 | 4_3:+54569201 | Msa0648150:CDS |
| GATATGGAGCTGAAATTAAG+AGG | 0.473758 | 4_3:+54571722 | Msa0648150:CDS |
| TAATCCGCGCTATATATAGA+AGG | 0.475627 | 4_3:-54572460 | None:intergenic |
| AACATCAAATTCAACAGGAT+TGG | 0.477689 | 4_3:+54571475 | Msa0648150:CDS |
| CTTTCAGTGTGAGTTTGAAG+AGG | 0.481509 | 4_3:+54572284 | Msa0648150:three_prime_UTR |
| ACAATAAATGATGTGATCAC+TGG | 0.488070 | 4_3:+54571398 | Msa0648150:CDS |
| TTGTCAAGTTTAGTTTCTGT+TGG | 0.490811 | 4_3:+54572317 | Msa0648150:three_prime_UTR |
| ATTAAATGCATTTCCCAAAG+TGG | 0.491593 | 4_3:-54569215 | None:intergenic |
| CAATTGTTATCTCCCAAGAA+AGG | 0.493013 | 4_3:+54569392 | Msa0648150:CDS |
| CAATAAATGATGTGATCACT+GGG | 0.495823 | 4_3:+54571399 | Msa0648150:CDS |
| GGAAAAGACAAAGGAAGAGA+AGG | 0.498632 | 4_3:-54569353 | None:intergenic |
| AAAACGATCAAGTCTAAGCT+TGG | 0.498977 | 4_3:+54569596 | Msa0648150:CDS |
| TCCCAAAGTGGTTTGTCTTG+TGG | 0.504133 | 4_3:-54569203 | None:intergenic |
| TTCAAACTTCACCATGCACT+TGG | 0.505787 | 4_3:+54569275 | Msa0648150:CDS |
| GCCAAAGCCATAGGTTCCAC+TGG | 0.507030 | 4_3:-54571907 | None:intergenic |
| ATCCAATTTGATTGGGCCAG+TGG | 0.512219 | 4_3:+54571891 | Msa0648150:CDS |
| GGATGGTTTGCCAAAGCCAT+AGG | 0.516215 | 4_3:-54571916 | None:intergenic |
| ATCCGAAAACATATGAACAT+AGG | 0.525975 | 4_3:-54568842 | None:intergenic |
| GTAAAGTACAAGCCTTTCAC+AGG | 0.526010 | 4_3:-54571937 | None:intergenic |
| ATAGTTTGAGAGTCGTCCAT+TGG | 0.527468 | 4_3:-54568882 | None:intergenic |
| AGGGGTTAGATAGGCTGGCT+TGG | 0.528713 | 4_3:-54571619 | None:intergenic |
| TTGGCAAACCATCCTGTGAA+AGG | 0.530246 | 4_3:+54571925 | Msa0648150:CDS |
| GGTCATATCCAAGGCAGTAA+TGG | 0.532557 | 4_3:+54572198 | Msa0648150:CDS |
| TATAAAGAAGCAGAAGGGCA+TGG | 0.532952 | 4_3:+54572257 | Msa0648150:three_prime_UTR |
| TTGGGAGATAACAATTGTGA+TGG | 0.542990 | 4_3:-54569386 | None:intergenic |
| GAAAAGACAAAGGAAGAGAA+GGG | 0.543491 | 4_3:-54569352 | None:intergenic |
| CTTCACCATGCACTTGGTGA+TGG | 0.544042 | 4_3:+54569281 | Msa0648150:CDS |
| ACTATCTATAAAGAAGCAGA+AGG | 0.555060 | 4_3:+54572251 | Msa0648150:three_prime_UTR |
| TTGCTTAGTACCAGGAACAT+TGG | 0.555485 | 4_3:+54571500 | Msa0648150:CDS |
| AGTACAAGCCTTTCACAGGA+TGG | 0.556400 | 4_3:-54571933 | None:intergenic |
| GGTGATGGTTACTCTCTCAT+GGG | 0.557425 | 4_3:+54569296 | Msa0648150:CDS |
| ATAAAGAAGCAGAAGGGCAT+GGG | 0.563560 | 4_3:+54572258 | Msa0648150:three_prime_UTR |
| GCTTTCCAGACAAATTCTAA+GGG | 0.564784 | 4_3:-54571638 | None:intergenic |
| TTATGTGTCAAAGATTATGA+TGG | 0.567297 | 4_3:+54569172 | Msa0648150:CDS |
| TTTGGAATTAGAAATTCCAA+TGG | 0.569395 | 4_3:+54568866 | Msa0648150:CDS |
| ACCAAGATGGCAAAATGAAG+TGG | 0.575574 | 4_3:+54569057 | Msa0648150:CDS |
| GACAAAACACCTATATGGAA+TGG | 0.575761 | 4_3:+54569509 | Msa0648150:CDS |
| GATTGGTGTTGCTTAGTACC+AGG | 0.580882 | 4_3:+54571492 | Msa0648150:CDS |
| TGGCTCTGTCACATCTTCAA+AGG | 0.583413 | 4_3:-54568784 | None:intergenic |
| CCTATATGGAATGGTGAGGA+AGG | 0.587168 | 4_3:+54569518 | Msa0648150:CDS |
| AATTGTGATGGTTTGCGTGA+AGG | 0.589854 | 4_3:-54569374 | None:intergenic |
| TCAGTGAAGGAATTGAAAAG+GGG | 0.592189 | 4_3:-54569446 | None:intergenic |
| CGGATTATGCTAACAAACTA+CGG | 0.596757 | 4_3:+54572476 | Msa0648150:three_prime_UTR |
| TGCCTTGGATATGACCTCAA+AGG | 0.599981 | 4_3:-54572191 | None:intergenic |
| CAGTGAAGGAATTGAAAAGG+GGG | 0.603771 | 4_3:-54569445 | None:intergenic |
| AGTAACCATCACCAAGTGCA+TGG | 0.610345 | 4_3:-54569286 | None:intergenic |
| AAGCACAAAATATAATCAAG+AGG | 0.610368 | 4_3:+54571657 | Msa0648150:CDS |
| ACCATTATGGAGGAGAAGCG+TGG | 0.611896 | 4_3:-54568936 | None:intergenic |
| GCAGCTTGAAGACCATATGA+AGG | 0.612976 | 4_3:+54569094 | Msa0648150:CDS |
| GCTCCATCCAAAATCAGTGA+AGG | 0.613358 | 4_3:-54569459 | None:intergenic |
| TATCCAACAAGCAATGCTGA+AGG | 0.616041 | 4_3:+54569242 | Msa0648150:CDS |
| AGCCTTTGAGGTCATATCCA+AGG | 0.617831 | 4_3:+54572189 | Msa0648150:CDS |
| TTAACCTTCTATATATAGCG+CGG | 0.622682 | 4_3:+54572456 | Msa0648150:three_prime_UTR |
| TTAGAAATAACTTGATCACA+TGG | 0.628372 | 4_3:-54572518 | None:intergenic |
| ACAGAGCCAGTAAGTCCAAG+TGG | 0.634141 | 4_3:+54568798 | Msa0648150:CDS |
| CTTTCCAGACAAATTCTAAG+GGG | 0.636642 | 4_3:-54571637 | None:intergenic |
| ATCAATCCAAGATATGACAA+AGG | 0.639015 | 4_3:+54571532 | Msa0648150:CDS |
| GCTGAAATTAAGAGGACATG+AGG | 0.640508 | 4_3:+54571730 | Msa0648150:CDS |
| TACAATGACAGGTGGACCTG+AGG | 0.642479 | 4_3:+54571957 | Msa0648150:CDS |
| TTAGTCTCTACTTTCTAACA+CGG | 0.646121 | 4_3:+54568740 | Msa0648150:five_prime_UTR |
| CATATAAAGTACCATTATGG+AGG | 0.648669 | 4_3:-54568946 | None:intergenic |
| CTATCTATAAAGAAGCAGAA+GGG | 0.651751 | 4_3:+54572252 | Msa0648150:three_prime_UTR |
| CTGATTCAAAATCTCCTTGG+GGG | 0.654193 | 4_3:+54571555 | Msa0648150:CDS |
| GTATTGAAGAATTGTCCACT+TGG | 0.655797 | 4_3:-54568813 | None:intergenic |
| GCTGATTCAAAATCTCCTTG+GGG | 0.657580 | 4_3:+54571554 | Msa0648150:CDS |
| GATCAAGTCTAAGCTTGGAG+TGG | 0.658375 | 4_3:+54569601 | Msa0648150:CDS |
| GATAGGTTTGATAGTACACA+AGG | 0.661721 | 4_3:-54569554 | None:intergenic |
| AACACCTATATGGAATGGTG+AGG | 0.661811 | 4_3:+54569514 | Msa0648150:CDS |
| TTGTACTTTACAATGACAGG+TGG | 0.673805 | 4_3:+54571949 | Msa0648150:CDS |
| TTGCGTGAAGGAAAAGACAA+AGG | 0.685949 | 4_3:-54569362 | None:intergenic |
| CCGAAAACATATGAACATAG+GGG | 0.692361 | 4_3:-54568840 | None:intergenic |
| ATATAGGTGAGAGACCAAGA+TGG | 0.699636 | 4_3:+54569044 | Msa0648150:intron |
| AAAACATATGAACATAGGGG+TGG | 0.715907 | 4_3:-54568837 | None:intergenic |
| AATAAATGATGTGATCACTG+GGG | 0.785544 | 4_3:+54571400 | Msa0648150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTTTAAAAAATAA+AGG | + | chr4_3:54569958-54569977 | Msa0648150:intron | 0.0% |
| !!! | TTAAAATTTTAAAAAATAAA+GGG | + | chr4_3:54569959-54569978 | Msa0648150:intron | 0.0% |
| !!! | TTAAAAATTTTAATTTTTTT+AGG | + | chr4_3:54570564-54570583 | Msa0648150:intron | 0.0% |
| !!! | ATATTTTTTTGAAAATTTTG+GGG | + | chr4_3:54569990-54570009 | Msa0648150:intron | 10.0% |
| !! | TTTGTAATTTAAAAAGAATT+AGG | + | chr4_3:54570019-54570038 | Msa0648150:intron | 10.0% |
| !! | TTGTAATTTAAAAAGAATTA+GGG | + | chr4_3:54570020-54570039 | Msa0648150:intron | 10.0% |
| !!! | AATTTTTTAAAACTGTAAAT+TGG | - | chr4_3:54570047-54570066 | None:intergenic | 10.0% |
| !!! | TTACAGTTTTAAAAAATTAT+AGG | + | chr4_3:54570049-54570068 | Msa0648150:intron | 10.0% |
| !!! | TACAGTTTTAAAAAATTATA+GGG | + | chr4_3:54570050-54570069 | Msa0648150:intron | 10.0% |
| !! | AAATTTGAAAATTGAAATTA+GGG | + | chr4_3:54570589-54570608 | Msa0648150:intron | 10.0% |
| !!! | AATTTTTTGGAAATTTATTA+GGG | + | chr4_3:54570893-54570912 | Msa0648150:intron | 10.0% |
| !!! | AATTTTCAAATTTTACATTT+AGG | - | chr4_3:54570948-54570967 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTAGAGAATTTT+AGG | + | chr4_3:54569816-54569835 | Msa0648150:intron | 15.0% |
| !! | TGTAATTTAAAAAGAATTAG+GGG | + | chr4_3:54570021-54570040 | Msa0648150:intron | 15.0% |
| !!! | ACAGTTTTAAAAAATTATAG+GGG | + | chr4_3:54570051-54570070 | Msa0648150:intron | 15.0% |
| !! | GAAATTCTCTAAATTTAATT+TGG | + | chr4_3:54570174-54570193 | Msa0648150:intron | 15.0% |
| !! | ACAAAAATATTTAGAAATGA+AGG | - | chr4_3:54570496-54570515 | None:intergenic | 15.0% |
| !!! | CTAATTTCAATTTTCAAATT+TGG | - | chr4_3:54570590-54570609 | None:intergenic | 15.0% |
| !! | CAAATTTGAAAATTGAAATT+AGG | + | chr4_3:54570588-54570607 | Msa0648150:intron | 15.0% |
| !! | AATTTGAAAATTGAAATTAG+GGG | + | chr4_3:54570590-54570609 | Msa0648150:intron | 15.0% |
| !! | AAATTTCAAAAAATGTTGAT+GGG | + | chr4_3:54570622-54570641 | Msa0648150:intron | 15.0% |
| !!! | AATTTTAATGACAACTTTTT+GGG | - | chr4_3:54570795-54570814 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTTCCAAAAAAT+AGG | + | chr4_3:54570859-54570878 | Msa0648150:intron | 15.0% |
| !!! | TTTTCAATTTCCAAAAAATA+GGG | + | chr4_3:54570860-54570879 | Msa0648150:intron | 15.0% |
| !!! | CAATTTTTTGGAAATTTATT+AGG | + | chr4_3:54570892-54570911 | Msa0648150:intron | 15.0% |
| !! | CAAATATGAATTTAATTGTT+TGG | - | chr4_3:54571074-54571093 | None:intergenic | 15.0% |
| !!! | AGTTTTGTAGTATAATATTT+CGG | - | chr4_3:54571165-54571184 | None:intergenic | 15.0% |
| !! | TATGAATTTGGTTATAATTA+AGG | - | chr4_3:54571272-54571291 | None:intergenic | 15.0% |
| !! | CAAGTGAAAAATTATAATTA+AGG | - | chr4_3:54571310-54571329 | None:intergenic | 15.0% |
| !!! | TAATTATAATTTTTCACTTG+TGG | + | chr4_3:54571310-54571329 | Msa0648150:intron | 15.0% |
| !! | TAAATAAGATTGAGTTAATA+AGG | - | chr4_3:54572547-54572566 | None:intergenic | 15.0% |
| !! | TATATGCTACATGTTTATAT+AGG | + | chr4_3:54569028-54569047 | Msa0648150:intron | 20.0% |
| !!! | ATTCAATTGATTCACTTTTA+GGG | - | chr4_3:54569130-54569149 | None:intergenic | 20.0% |
| !!! | AATTCAATTGATTCACTTTT+AGG | - | chr4_3:54569131-54569150 | None:intergenic | 20.0% |
| !! | ATATATAAATTTGCGATAGA+GGG | - | chr4_3:54569635-54569654 | None:intergenic | 20.0% |
| !! | AAAAAATCAAATACACTCTT+AGG | - | chr4_3:54569804-54569823 | None:intergenic | 20.0% |
| !!! | AAATTCCATTGTTAACATTT+TGG | + | chr4_3:54569902-54569921 | Msa0648150:intron | 20.0% |
| !!! | TTTGAACATTTTGAAAAGTA+CGG | + | chr4_3:54570078-54570097 | Msa0648150:intron | 20.0% |
| !!! | TTACTTTTTCAAATTTTGCA+AGG | - | chr4_3:54570110-54570129 | None:intergenic | 20.0% |
| !! | AATTTGAAAAAGTAACAAGA+AGG | + | chr4_3:54570115-54570134 | Msa0648150:intron | 20.0% |
| !! | ATTTGAAAAAGTAACAAGAA+GGG | + | chr4_3:54570116-54570135 | Msa0648150:intron | 20.0% |
| !! | TTTAGATCAATTTCAGTATT+TGG | - | chr4_3:54570251-54570270 | None:intergenic | 20.0% |
| !! | AATACTGAAATTGATCTAAA+AGG | + | chr4_3:54570251-54570270 | Msa0648150:intron | 20.0% |
| !!! | TTTGAAGAATTTAGAATTCT+AGG | + | chr4_3:54570420-54570439 | Msa0648150:intron | 20.0% |
| !!! | TCTAAATATTTTTGTTTGCA+TGG | + | chr4_3:54570501-54570520 | Msa0648150:intron | 20.0% |
| !! | CAAATTTCAAAAAATGTTGA+TGG | + | chr4_3:54570621-54570640 | Msa0648150:intron | 20.0% |
| !!! | CAATTTTAATGACAACTTTT+TGG | - | chr4_3:54570796-54570815 | None:intergenic | 20.0% |
| !! | TTTCAATTTCCAAAAAATAG+GGG | + | chr4_3:54570861-54570880 | Msa0648150:intron | 20.0% |
| !!! | TTGAAAATTTTGGAAATGTA+AGG | + | chr4_3:54570921-54570940 | Msa0648150:intron | 20.0% |
| !!! | CCAAATTCATACATTTTATT+CGG | + | chr4_3:54571281-54571300 | Msa0648150:intron | 20.0% |
| !! | GTATATGTAAGAAAGAAATA+TGG | - | chr4_3:54571583-54571602 | None:intergenic | 20.0% |
| !! | GAAAAATAAACAAAAGACTT+GGG | - | chr4_3:54571778-54571797 | None:intergenic | 20.0% |
| !! | TGAAAAATAAACAAAAGACT+TGG | - | chr4_3:54571779-54571798 | None:intergenic | 20.0% |
| !! | TATTTAATCTTTGTTCTTGT+TGG | - | chr4_3:54572230-54572249 | None:intergenic | 20.0% |
| !! | TTCATATGTTTTCGGATTTT+TGG | + | chr4_3:54568848-54568867 | Msa0648150:CDS | 25.0% |
| !! | TTTGGAATTAGAAATTCCAA+TGG | + | chr4_3:54568866-54568885 | Msa0648150:CDS | 25.0% |
| !! | GATTGATAGGTAAGAAATTT+TGG | - | chr4_3:54568917-54568936 | None:intergenic | 25.0% |
| !! | ACACATATAAAGTACCATTA+TGG | - | chr4_3:54568952-54568971 | None:intergenic | 25.0% |
| ! | TTATGTGTCAAAGATTATGA+TGG | + | chr4_3:54569172-54569191 | Msa0648150:CDS | 25.0% |
| !! | ATCTTTAATCATTGAGCTTT+TGG | - | chr4_3:54569489-54569508 | None:intergenic | 25.0% |
| ! | CATATATAAATTTGCGATAG+AGG | - | chr4_3:54569636-54569655 | None:intergenic | 25.0% |
| !!! | GAGAGAGATATTGTTTTTTT+AGG | + | chr4_3:54569724-54569743 | Msa0648150:intron | 25.0% |
| !!! | AGAGATATTGTTTTTTTAGG+AGG | + | chr4_3:54569727-54569746 | Msa0648150:intron | 25.0% |
| !!! | ATATTGTTTTTTTAGGAGGT+GGG | + | chr4_3:54569731-54569750 | Msa0648150:intron | 25.0% |
| ! | AAGACTAGACATATTCTAAT+AGG | - | chr4_3:54569771-54569790 | None:intergenic | 25.0% |
| !!! | TTGAACATTTTGAAAAGTAC+GGG | + | chr4_3:54570079-54570098 | Msa0648150:intron | 25.0% |
| !!! | ATTTGGAATTCCTAACTTTT+AGG | + | chr4_3:54570143-54570162 | Msa0648150:intron | 25.0% |
| !! | AACTTCATTCTCATCATTTT+TGG | + | chr4_3:54570534-54570553 | Msa0648150:intron | 25.0% |
| !!! | AACTCTTTTTGAAAAGTTGA+GGG | + | chr4_3:54570831-54570850 | Msa0648150:intron | 25.0% |
| !! | TAGGGTCAATTTGAAAATTT+TGG | + | chr4_3:54570911-54570930 | Msa0648150:intron | 25.0% |
| ! | CCGAATAAAATGTATGAATT+TGG | - | chr4_3:54571284-54571303 | None:intergenic | 25.0% |
| ! | AAGCACAAAATATAATCAAG+AGG | + | chr4_3:54571657-54571676 | Msa0648150:CDS | 25.0% |
| !!! | TCACTGTTTTTCTTATTGAA+TGG | + | chr4_3:54571693-54571712 | Msa0648150:CDS | 25.0% |
| ! | TTGTCATATCCAATTTGATT+GGG | + | chr4_3:54571884-54571903 | Msa0648150:CDS | 25.0% |
| !!! | GTGACACATTTTTTTTTAAG+AGG | - | chr4_3:54572037-54572056 | None:intergenic | 25.0% |
| ! | TTAGAAATAACTTGATCACA+TGG | - | chr4_3:54572521-54572540 | None:intergenic | 25.0% |
| TTAGTCTCTACTTTCTAACA+CGG | + | chr4_3:54568740-54568759 | Msa0648150:five_prime_UTR | 30.0% | |
| TCCGAAAACATATGAACATA+GGG | - | chr4_3:54568844-54568863 | None:intergenic | 30.0% | |
| ATCCGAAAACATATGAACAT+AGG | - | chr4_3:54568845-54568864 | None:intergenic | 30.0% | |
| ! | CATATAAAGTACCATTATGG+AGG | - | chr4_3:54568949-54568968 | None:intergenic | 30.0% |
| AATGAAGTGGAAAAAAGTAG+AGG | + | chr4_3:54569070-54569089 | Msa0648150:CDS | 30.0% | |
| !! | GATTCACTTTTAGGGAATAT+TGG | - | chr4_3:54569122-54569141 | None:intergenic | 30.0% |
| ATTAAATGCATTTCCCAAAG+TGG | - | chr4_3:54569218-54569237 | None:intergenic | 30.0% | |
| CACTTGAAAAAACCTTTCTT+GGG | - | chr4_3:54569407-54569426 | None:intergenic | 30.0% | |
| ATCAGTGAAGGAATTGAAAA+GGG | - | chr4_3:54569450-54569469 | None:intergenic | 30.0% | |
| AATCAGTGAAGGAATTGAAA+AGG | - | chr4_3:54569451-54569470 | None:intergenic | 30.0% | |
| !!! | TTCAATTCCTTCACTGATTT+TGG | + | chr4_3:54569452-54569471 | Msa0648150:CDS | 30.0% |
| AAGATGACAAAACACCTATA+TGG | + | chr4_3:54569504-54569523 | Msa0648150:CDS | 30.0% | |
| TTTCATCAAGAGAGAATGAT+AGG | - | chr4_3:54569574-54569593 | None:intergenic | 30.0% | |
| !!! | GATATTGTTTTTTTAGGAGG+TGG | + | chr4_3:54569730-54569749 | Msa0648150:intron | 30.0% |
| !!! | TATTGTTTTTTTAGGAGGTG+GGG | + | chr4_3:54569732-54569751 | Msa0648150:intron | 30.0% |
| !! | TTAGAATATGTCTAGTCTTG+CGG | + | chr4_3:54569772-54569791 | Msa0648150:intron | 30.0% |
| AGTAGCCAAAATGTTAACAA+TGG | - | chr4_3:54569910-54569929 | None:intergenic | 30.0% | |
| !! | TGAACATTTTGAAAAGTACG+GGG | + | chr4_3:54570080-54570099 | Msa0648150:intron | 30.0% |
| TCAAATGACACCTAAAAGTT+AGG | - | chr4_3:54570156-54570175 | None:intergenic | 30.0% | |
| ! | GAGGTAATGTAATTTTTGCA+GGG | - | chr4_3:54570286-54570305 | None:intergenic | 30.0% |
| ! | TGAGGTAATGTAATTTTTGC+AGG | - | chr4_3:54570287-54570306 | None:intergenic | 30.0% |
| ! | TTGGATGAAAGAATGTTTTG+AGG | - | chr4_3:54570305-54570324 | None:intergenic | 30.0% |
| GAAATTTCTTAGAGTGTGTT+TGG | - | chr4_3:54570324-54570343 | None:intergenic | 30.0% | |
| ! | ACACACTCTAAGAAATTTCA+AGG | + | chr4_3:54570325-54570344 | Msa0648150:intron | 30.0% |
| ATGAATTTGTAGAGAAAAGG+AGG | - | chr4_3:54570766-54570785 | None:intergenic | 30.0% | |
| ! | TCCTTTTCTCTACAAATTCA+TGG | + | chr4_3:54570765-54570784 | Msa0648150:intron | 30.0% |
| ACCATGAATTTGTAGAGAAA+AGG | - | chr4_3:54570769-54570788 | None:intergenic | 30.0% | |
| !! | CAACTCTTTTTGAAAAGTTG+AGG | + | chr4_3:54570830-54570849 | Msa0648150:intron | 30.0% |
| !! | ACTCTTTTTGAAAAGTTGAG+GGG | + | chr4_3:54570832-54570851 | Msa0648150:intron | 30.0% |
| AACTCTCTCTCTAAATCTTA+TGG | + | chr4_3:54571181-54571200 | Msa0648150:intron | 30.0% | |
| ACAATAAATGATGTGATCAC+TGG | + | chr4_3:54571398-54571417 | Msa0648150:CDS | 30.0% | |
| CAATAAATGATGTGATCACT+GGG | + | chr4_3:54571399-54571418 | Msa0648150:CDS | 30.0% | |
| AATAAATGATGTGATCACTG+GGG | + | chr4_3:54571400-54571419 | Msa0648150:CDS | 30.0% | |
| AACATCAAATTCAACAGGAT+TGG | + | chr4_3:54571475-54571494 | Msa0648150:CDS | 30.0% | |
| TTGTCATATCTTGGATTGAT+TGG | - | chr4_3:54571532-54571551 | None:intergenic | 30.0% | |
| ATCAATCCAAGATATGACAA+AGG | + | chr4_3:54571532-54571551 | Msa0648150:CDS | 30.0% | |
| TATTGAATGGCTCTTAGATA+TGG | + | chr4_3:54571706-54571725 | Msa0648150:CDS | 30.0% | |
| TTGCTATAAACATGTGTTGT+AGG | + | chr4_3:54571819-54571838 | Msa0648150:intron | 30.0% | |
| GTTGTCATATCCAATTTGAT+TGG | + | chr4_3:54571883-54571902 | Msa0648150:CDS | 30.0% | |
| TGTTATAGTAACATGAGAGA+AGG | - | chr4_3:54572013-54572032 | None:intergenic | 30.0% | |
| CTATAACATGTTATCCTTTG+TGG | + | chr4_3:54572056-54572075 | Msa0648150:intron | 30.0% | |
| ACTATCTATAAAGAAGCAGA+AGG | + | chr4_3:54572251-54572270 | Msa0648150:three_prime_UTR | 30.0% | |
| CTATCTATAAAGAAGCAGAA+GGG | + | chr4_3:54572252-54572271 | Msa0648150:three_prime_UTR | 30.0% | |
| ! | TTGTCAAGTTTAGTTTCTGT+TGG | + | chr4_3:54572317-54572336 | Msa0648150:three_prime_UTR | 30.0% |
| TTAACCTTCTATATATAGCG+CGG | + | chr4_3:54572456-54572475 | Msa0648150:three_prime_UTR | 30.0% | |
| GTATTGAAGAATTGTCCACT+TGG | - | chr4_3:54568816-54568835 | None:intergenic | 35.0% | |
| AAAACATATGAACATAGGGG+TGG | - | chr4_3:54568840-54568859 | None:intergenic | 35.0% | |
| CCGAAAACATATGAACATAG+GGG | - | chr4_3:54568843-54568862 | None:intergenic | 35.0% | |
| ! | CCCCTATGTTCATATGTTTT+CGG | + | chr4_3:54568840-54568859 | Msa0648150:CDS | 35.0% |
| GGAATATTGGAACCTTCATA+TGG | - | chr4_3:54569109-54569128 | None:intergenic | 35.0% | |
| GAAAAGACAAAGGAAGAGAA+GGG | - | chr4_3:54569355-54569374 | None:intergenic | 35.0% | |
| TTGGGAGATAACAATTGTGA+TGG | - | chr4_3:54569389-54569408 | None:intergenic | 35.0% | |
| CAATTGTTATCTCCCAAGAA+AGG | + | chr4_3:54569392-54569411 | Msa0648150:CDS | 35.0% | |
| CCACTTGAAAAAACCTTTCT+TGG | - | chr4_3:54569408-54569427 | None:intergenic | 35.0% | |
| !!! | CCAAGAAAGGTTTTTTCAAG+TGG | + | chr4_3:54569405-54569424 | Msa0648150:CDS | 35.0% |
| TCAGTGAAGGAATTGAAAAG+GGG | - | chr4_3:54569449-54569468 | None:intergenic | 35.0% | |
| !!! | ATTCCTTCACTGATTTTGGA+TGG | + | chr4_3:54569456-54569475 | Msa0648150:CDS | 35.0% |
| GACAAAACACCTATATGGAA+TGG | + | chr4_3:54569509-54569528 | Msa0648150:CDS | 35.0% | |
| ! | GATAGGTTTGATAGTACACA+AGG | - | chr4_3:54569557-54569576 | None:intergenic | 35.0% |
| AAAACGATCAAGTCTAAGCT+TGG | + | chr4_3:54569596-54569615 | Msa0648150:CDS | 35.0% | |
| CATTTCTAAATGTCTTCGCT+TGG | + | chr4_3:54569868-54569887 | Msa0648150:intron | 35.0% | |
| GTAACAAGAAGGGAGAAATT+TGG | + | chr4_3:54570126-54570145 | Msa0648150:intron | 35.0% | |
| ! | GTATTGACAGAAAAGAGAGA+AGG | - | chr4_3:54570744-54570763 | None:intergenic | 35.0% |
| !!! | TTGGATAGGAGAGTGTTTTA+AGG | - | chr4_3:54571120-54571139 | None:intergenic | 35.0% |
| TATCAAACCGTTAGTGTGTT+TGG | - | chr4_3:54571139-54571158 | None:intergenic | 35.0% | |
| TCCAAGTTCATACATATTGC+TGG | + | chr4_3:54571242-54571261 | Msa0648150:intron | 35.0% | |
| CCAAGTTCATACATATTGCT+GGG | + | chr4_3:54571243-54571262 | Msa0648150:intron | 35.0% | |
| ! | ATCACTGGGGTAATTTTCTA+TGG | + | chr4_3:54571413-54571432 | Msa0648150:CDS | 35.0% |
| ! | TCACTGGGGTAATTTTCTAT+GGG | + | chr4_3:54571414-54571433 | Msa0648150:CDS | 35.0% |
| ! | GGGTAATTTTCTATGGGATT+AGG | + | chr4_3:54571420-54571439 | Msa0648150:CDS | 35.0% |
| CATGCAAGAGATTGACAATA+AGG | + | chr4_3:54571448-54571467 | Msa0648150:CDS | 35.0% | |
| GCAAGAACATCAAATTCAAC+AGG | + | chr4_3:54571470-54571489 | Msa0648150:CDS | 35.0% | |
| AATCAGCCTTTGTCATATCT+TGG | - | chr4_3:54571541-54571560 | None:intergenic | 35.0% | |
| ! | CAAATTCTAAGGGGTTAGAT+AGG | - | chr4_3:54571631-54571650 | None:intergenic | 35.0% |
| CTTTCCAGACAAATTCTAAG+GGG | - | chr4_3:54571640-54571659 | None:intergenic | 35.0% | |
| GCTTTCCAGACAAATTCTAA+GGG | - | chr4_3:54571641-54571660 | None:intergenic | 35.0% | |
| TGCTTTCCAGACAAATTCTA+AGG | - | chr4_3:54571642-54571661 | None:intergenic | 35.0% | |
| GATATGGAGCTGAAATTAAG+AGG | + | chr4_3:54571722-54571741 | Msa0648150:CDS | 35.0% | |
| AAATTAAGAGGACATGAGGT+GGG | + | chr4_3:54571734-54571753 | Msa0648150:intron | 35.0% | |
| GCAGTTGCTAAACATATCTA+TGG | + | chr4_3:54571841-54571860 | Msa0648150:CDS | 35.0% | |
| TTGTACTTTACAATGACAGG+TGG | + | chr4_3:54571949-54571968 | Msa0648150:CDS | 35.0% | |
| CAACTTGAGAGTTAAGATGA+TGG | - | chr4_3:54571986-54572005 | None:intergenic | 35.0% | |
| CATCATCTTAACTCTCAAGT+TGG | + | chr4_3:54571984-54572003 | Msa0648150:intron | 35.0% | |
| TTTATACTCTGCAACCACAA+AGG | - | chr4_3:54572073-54572092 | None:intergenic | 35.0% | |
| TAATCCGCGCTATATATAGA+AGG | - | chr4_3:54572463-54572482 | None:intergenic | 35.0% | |
| CGGATTATGCTAACAAACTA+CGG | + | chr4_3:54572476-54572495 | Msa0648150:three_prime_UTR | 35.0% | |
| TTGATCACATGGTTTCTTGT+TGG | - | chr4_3:54572510-54572529 | None:intergenic | 35.0% | |
| CACGGTGCATAGTACTAAAA+TGG | + | chr4_3:54568758-54568777 | Msa0648150:exon | 40.0% | |
| AATTGTCCACTTGGACTTAC+TGG | - | chr4_3:54568807-54568826 | None:intergenic | 40.0% | |
| ATAGTTTGAGAGTCGTCCAT+TGG | - | chr4_3:54568885-54568904 | None:intergenic | 40.0% | |
| ATATAGGTGAGAGACCAAGA+TGG | + | chr4_3:54569044-54569063 | Msa0648150:intron | 40.0% | |
| ACCAAGATGGCAAAATGAAG+TGG | + | chr4_3:54569057-54569076 | Msa0648150:CDS | 40.0% | |
| ! | TCCACTTCATTTTGCCATCT+TGG | - | chr4_3:54569061-54569080 | None:intergenic | 40.0% |
| ACCACAAGACAAACCACTTT+GGG | + | chr4_3:54569202-54569221 | Msa0648150:CDS | 40.0% | |
| TATCCAACAAGCAATGCTGA+AGG | + | chr4_3:54569242-54569261 | Msa0648150:CDS | 40.0% | |
| TTCAAACTTCACCATGCACT+TGG | + | chr4_3:54569275-54569294 | Msa0648150:CDS | 40.0% | |
| GGAAAAGACAAAGGAAGAGA+AGG | - | chr4_3:54569356-54569375 | None:intergenic | 40.0% | |
| TTGCGTGAAGGAAAAGACAA+AGG | - | chr4_3:54569365-54569384 | None:intergenic | 40.0% | |
| ! | AATTGTGATGGTTTGCGTGA+AGG | - | chr4_3:54569377-54569396 | None:intergenic | 40.0% |
| AAAGGGGGAATATGGTTGAA+GGG | - | chr4_3:54569433-54569452 | None:intergenic | 40.0% | |
| AAAAGGGGGAATATGGTTGA+AGG | - | chr4_3:54569434-54569453 | None:intergenic | 40.0% | |
| GGAATTGAAAAGGGGGAATA+TGG | - | chr4_3:54569441-54569460 | None:intergenic | 40.0% | |
| CAGTGAAGGAATTGAAAAGG+GGG | - | chr4_3:54569448-54569467 | None:intergenic | 40.0% | |
| AACACCTATATGGAATGGTG+AGG | + | chr4_3:54569514-54569533 | Msa0648150:CDS | 40.0% | |
| GATCCTTTATCGCTGTAGTA+TGG | + | chr4_3:54569674-54569693 | Msa0648150:intron | 40.0% | |
| !!! | AGAGAGGACTGGTTTTTGAA+CGG | - | chr4_3:54570362-54570381 | None:intergenic | 40.0% |
| ! | TCTATACCGAAGAGTGTGTT+TGG | + | chr4_3:54570379-54570398 | Msa0648150:intron | 40.0% |
| CATCATCCAAACACACTCTT+CGG | - | chr4_3:54570388-54570407 | None:intergenic | 40.0% | |
| !!! | GCAAAGTGACCCCTATTTTT+TGG | - | chr4_3:54570873-54570892 | None:intergenic | 40.0% |
| !!! | GGGGTCACTTTGCAATTTTT+TGG | + | chr4_3:54570880-54570899 | Msa0648150:intron | 40.0% |
| CTCCTATCCAAACACACTAA+CGG | + | chr4_3:54571129-54571148 | Msa0648150:intron | 40.0% | |
| AACCGTTAGTGTGTTTGGAT+AGG | - | chr4_3:54571134-54571153 | None:intergenic | 40.0% | |
| CCCAGCAATATGTATGAACT+TGG | - | chr4_3:54571246-54571265 | None:intergenic | 40.0% | |
| TTGCTTAGTACCAGGAACAT+TGG | + | chr4_3:54571500-54571519 | Msa0648150:CDS | 40.0% | |
| ! | TTGGTAACTTCCAATGTTCC+TGG | - | chr4_3:54571513-54571532 | None:intergenic | 40.0% |
| ! | AGGCTGATTCAAAATCTCCT+TGG | + | chr4_3:54571552-54571571 | Msa0648150:CDS | 40.0% |
| ! | GGCTGATTCAAAATCTCCTT+GGG | + | chr4_3:54571553-54571572 | Msa0648150:CDS | 40.0% |
| ! | GCTGATTCAAAATCTCCTTG+GGG | + | chr4_3:54571554-54571573 | Msa0648150:CDS | 40.0% |
| CTGATTCAAAATCTCCTTGG+GGG | + | chr4_3:54571555-54571574 | Msa0648150:CDS | 40.0% | |
| AAAGAAATATGGTTCCCCCA+AGG | - | chr4_3:54571572-54571591 | None:intergenic | 40.0% | |
| CTAACCCCTTAGAATTTGTC+TGG | + | chr4_3:54571633-54571652 | Msa0648150:CDS | 40.0% | |
| GCTGAAATTAAGAGGACATG+AGG | + | chr4_3:54571730-54571749 | Msa0648150:CDS | 40.0% | |
| GAAATTAAGAGGACATGAGG+TGG | + | chr4_3:54571733-54571752 | Msa0648150:intron | 40.0% | |
| GTAAAGTACAAGCCTTTCAC+AGG | - | chr4_3:54571940-54571959 | None:intergenic | 40.0% | |
| GGCTTGTACTTTACAATGAC+AGG | + | chr4_3:54571946-54571965 | Msa0648150:CDS | 40.0% | |
| ! | GTTAAGATGATGGTTACCTC+AGG | - | chr4_3:54571976-54571995 | None:intergenic | 40.0% |
| TATAAAGAAGCAGAAGGGCA+TGG | + | chr4_3:54572257-54572276 | Msa0648150:three_prime_UTR | 40.0% | |
| ! | ATAAAGAAGCAGAAGGGCAT+GGG | + | chr4_3:54572258-54572277 | Msa0648150:three_prime_UTR | 40.0% |
| CTTTCAGTGTGAGTTTGAAG+AGG | + | chr4_3:54572284-54572303 | Msa0648150:three_prime_UTR | 40.0% | |
| GCTAACAAACTACGGTTACT+TGG | + | chr4_3:54572484-54572503 | Msa0648150:three_prime_UTR | 40.0% | |
| ! | TGGCTCTGTCACATCTTCAA+AGG | - | chr4_3:54568787-54568806 | None:intergenic | 45.0% |
| GCAGCTTGAAGACCATATGA+AGG | + | chr4_3:54569094-54569113 | Msa0648150:CDS | 45.0% | |
| CACCACAAGACAAACCACTT+TGG | + | chr4_3:54569201-54569220 | Msa0648150:CDS | 45.0% | |
| ! | TCCCAAAGTGGTTTGTCTTG+TGG | - | chr4_3:54569206-54569225 | None:intergenic | 45.0% |
| GTTCCTTCAGCATTGCTTGT+TGG | - | chr4_3:54569248-54569267 | None:intergenic | 45.0% | |
| AGTAACCATCACCAAGTGCA+TGG | - | chr4_3:54569289-54569308 | None:intergenic | 45.0% | |
| !! | TGGTGATGGTTACTCTCTCA+TGG | + | chr4_3:54569295-54569314 | Msa0648150:CDS | 45.0% |
| ! | GGTGATGGTTACTCTCTCAT+GGG | + | chr4_3:54569296-54569315 | Msa0648150:CDS | 45.0% |
| GCTCCATCCAAAATCAGTGA+AGG | - | chr4_3:54569462-54569481 | None:intergenic | 45.0% | |
| CCTTCCTCACCATTCCATAT+AGG | - | chr4_3:54569521-54569540 | None:intergenic | 45.0% | |
| CCTATATGGAATGGTGAGGA+AGG | + | chr4_3:54569518-54569537 | Msa0648150:CDS | 45.0% | |
| GATCAAGTCTAAGCTTGGAG+TGG | + | chr4_3:54569601-54569620 | Msa0648150:CDS | 45.0% | |
| GCACCATACTACAGCGATAA+AGG | - | chr4_3:54569680-54569699 | None:intergenic | 45.0% | |
| ACACACTCTTCGGTATAGAG+AGG | - | chr4_3:54570378-54570397 | None:intergenic | 45.0% | |
| !! | GATTGGTGTTGCTTAGTACC+AGG | + | chr4_3:54571492-54571511 | Msa0648150:CDS | 45.0% |
| ! | TTCTAAGGGGTTAGATAGGC+TGG | - | chr4_3:54571627-54571646 | None:intergenic | 45.0% |
| ATCCAATTTGATTGGGCCAG+TGG | + | chr4_3:54571891-54571910 | Msa0648150:CDS | 45.0% | |
| TTCCACTGGCCCAATCAAAT+TGG | - | chr4_3:54571896-54571915 | None:intergenic | 45.0% | |
| TTGGCAAACCATCCTGTGAA+AGG | + | chr4_3:54571925-54571944 | Msa0648150:CDS | 45.0% | |
| AGTACAAGCCTTTCACAGGA+TGG | - | chr4_3:54571936-54571955 | None:intergenic | 45.0% | |
| GTGCATAGTAAGAGCCTTTG+AGG | + | chr4_3:54572177-54572196 | Msa0648150:CDS | 45.0% | |
| !! | AGCCTTTGAGGTCATATCCA+AGG | + | chr4_3:54572189-54572208 | Msa0648150:CDS | 45.0% |
| TGCCTTGGATATGACCTCAA+AGG | - | chr4_3:54572194-54572213 | None:intergenic | 45.0% | |
| GGTCATATCCAAGGCAGTAA+TGG | + | chr4_3:54572198-54572217 | Msa0648150:CDS | 45.0% | |
| GGAAATCTCCATTACTGCCT+TGG | - | chr4_3:54572209-54572228 | None:intergenic | 45.0% | |
| !!! | TTTTAGAAAAATTATTTTTT+AGG | + | chr4_3:54569929-54569948 | Msa0648150:intron | 5.0% |
| !!! | TTTAGAAAAATTATTTTTTA+GGG | + | chr4_3:54569930-54569949 | Msa0648150:intron | 5.0% |
| !!! | TTATATTTTTTTGAAAATTT+TGG | + | chr4_3:54569988-54570007 | Msa0648150:intron | 5.0% |
| !!! | TATATTTTTTTGAAAATTTT+GGG | + | chr4_3:54569989-54570008 | Msa0648150:intron | 5.0% |
| !!! | TTTGTATTTTTTTTTTTTTT+TGG | + | chr4_3:54571367-54571386 | Msa0648150:intron | 5.0% |
| ACAGAGCCAGTAAGTCCAAG+TGG | + | chr4_3:54568798-54568817 | Msa0648150:CDS | 50.0% | |
| ! | GAGGAGAAGCGTGGATTGAT+AGG | - | chr4_3:54568930-54568949 | None:intergenic | 50.0% |
| TCCACGCTTCTCCTCCATAA+TGG | + | chr4_3:54568935-54568954 | Msa0648150:CDS | 50.0% | |
| ACCATTATGGAGGAGAAGCG+TGG | - | chr4_3:54568939-54568958 | None:intergenic | 50.0% | |
| ! | CTTCACCATGCACTTGGTGA+TGG | + | chr4_3:54569281-54569300 | Msa0648150:CDS | 50.0% |
| CTCTTCGGTATAGAGAGGAC+TGG | - | chr4_3:54570373-54570392 | None:intergenic | 50.0% | |
| GCTGCATCACCATATTGCAG+CGG | + | chr4_3:54571212-54571231 | Msa0648150:intron | 50.0% | |
| TCACCATATTGCAGCGGTAG+AGG | + | chr4_3:54571218-54571237 | Msa0648150:intron | 50.0% | |
| GATCCTCTACCGCTGCAATA+TGG | - | chr4_3:54571224-54571243 | None:intergenic | 50.0% | |
| !! | GCTTGGCACAACTTTGGGAT+TGG | - | chr4_3:54571605-54571624 | None:intergenic | 50.0% |
| ! | GGATGGTTTGCCAAAGCCAT+AGG | - | chr4_3:54571919-54571938 | None:intergenic | 50.0% |
| TACAATGACAGGTGGACCTG+AGG | + | chr4_3:54571957-54571976 | Msa0648150:CDS | 50.0% | |
| !! | GGCTGGCTTGGCACAACTTT+GGG | - | chr4_3:54571610-54571629 | None:intergenic | 55.0% |
| !! | AGGCTGGCTTGGCACAACTT+TGG | - | chr4_3:54571611-54571630 | None:intergenic | 55.0% |
| ! | AGGGGTTAGATAGGCTGGCT+TGG | - | chr4_3:54571622-54571641 | None:intergenic | 55.0% |
| GATTGGGCCAGTGGAACCTA+TGG | + | chr4_3:54571900-54571919 | Msa0648150:CDS | 55.0% | |
| GCCAGTGGAACCTATGGCTT+TGG | + | chr4_3:54571906-54571925 | Msa0648150:CDS | 55.0% | |
| GCCAAAGCCATAGGTTCCAC+TGG | - | chr4_3:54571910-54571929 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 54568703 | 54572622 | 54568703 | ID=Msa0648150;Name=Msa0648150 |
| chr4_3 | mRNA | 54568703 | 54572622 | 54568703 | ID=Msa0648150-mRNA-1;Parent=Msa0648150;Name=Msa0648150-mRNA-1;_AED=0.40;_eAED=0.40;_QI=74|1|1|1|1|1|5|376|468 |
| chr4_3 | exon | 54568703 | 54568956 | 54568703 | ID=Msa0648150-mRNA-1:exon:13846;Parent=Msa0648150-mRNA-1 |
| chr4_3 | exon | 54569050 | 54569622 | 54569050 | ID=Msa0648150-mRNA-1:exon:13847;Parent=Msa0648150-mRNA-1 |
| chr4_3 | exon | 54571398 | 54571751 | 54571398 | ID=Msa0648150-mRNA-1:exon:13848;Parent=Msa0648150-mRNA-1 |
| chr4_3 | exon | 54571841 | 54571978 | 54571841 | ID=Msa0648150-mRNA-1:exon:13849;Parent=Msa0648150-mRNA-1 |
| chr4_3 | exon | 54572085 | 54572622 | 54572085 | ID=Msa0648150-mRNA-1:exon:13850;Parent=Msa0648150-mRNA-1 |
| chr4_3 | five_prime_UTR | 54568703 | 54568776 | 54568703 | ID=Msa0648150-mRNA-1:five_prime_utr;Parent=Msa0648150-mRNA-1 |
| chr4_3 | CDS | 54568777 | 54568956 | 54568777 | ID=Msa0648150-mRNA-1:cds;Parent=Msa0648150-mRNA-1 |
| chr4_3 | CDS | 54569050 | 54569622 | 54569050 | ID=Msa0648150-mRNA-1:cds;Parent=Msa0648150-mRNA-1 |
| chr4_3 | CDS | 54571398 | 54571751 | 54571398 | ID=Msa0648150-mRNA-1:cds;Parent=Msa0648150-mRNA-1 |
| chr4_3 | CDS | 54571841 | 54571978 | 54571841 | ID=Msa0648150-mRNA-1:cds;Parent=Msa0648150-mRNA-1 |
| chr4_3 | CDS | 54572085 | 54572246 | 54572085 | ID=Msa0648150-mRNA-1:cds;Parent=Msa0648150-mRNA-1 |
| chr4_3 | three_prime_UTR | 54572247 | 54572622 | 54572247 | ID=Msa0648150-mRNA-1:three_prime_utr;Parent=Msa0648150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
