AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363440 MtrunA17_Chr3g0102071 96.857 350 11 0 1 350 1 350 0.0 686
Msa0363440 MtrunA17_Chr2g0328511 58.497 306 115 4 45 349 42 336 4.46e-131 377
Msa0363440 MtrunA17_Chr4g0043491 24.702 336 225 11 32 348 23 349 1.30e-18 85.9
Msa0363440 MtrunA17_Chr5g0430841 22.397 317 199 10 55 348 25 317 8.37e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363440 AT1G55910.1 59.050 337 91 7 26 350 25 326 6.68e-130 375
Msa0363440 AT5G59520.1 51.124 356 159 5 2 349 5 353 2.80e-116 341
Msa0363440 AT1G31260.1 25.316 316 209 11 50 348 58 363 1.07e-16 80.9
Msa0363440 AT4G19690.2 23.944 355 228 10 14 348 14 346 2.06e-15 76.6
Msa0363440 AT4G19680.2 24.932 365 237 12 5 348 1 349 1.08e-14 74.7
Msa0363440 AT2G32270.1 25.212 353 228 12 8 348 10 338 9.73e-13 68.9
Msa0363440 AT2G04032.1 22.767 347 223 12 1 317 1 332 9.66e-12 65.9

Find 92 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGCTGGTGGAGTGTTTC+TGG 0.126897 3_1:-55827160 Msa0363440:CDS
AATGAAGCGTTCTTGATATT+AGG 0.217202 3_1:-55827189 Msa0363440:CDS
TTGTGTTATTTCTTCTCTTT+TGG 0.222822 3_1:-55827016 Msa0363440:CDS
CAGACGCATGGAAAGCTTTA+TGG 0.223228 3_1:-55825119 Msa0363440:CDS
TTATAGCTGTTGTTATGATA+TGG 0.275907 3_1:-55824765 Msa0363440:CDS
TTCTTCGCCACTTTCATTGC+TGG 0.338005 3_1:-55827237 Msa0363440:CDS
TTCCAAATGGAAAATGAGTA+TGG 0.338344 3_1:+55824527 None:intergenic
CAATCGTTAAGTGCATGTTT+TGG 0.338958 3_1:+55824292 None:intergenic
ATGAAGCGTTCTTGATATTA+GGG 0.339578 3_1:-55827188 Msa0363440:CDS
AAACTTGTATCCTGCATCTA+TGG 0.340469 3_1:+55824550 None:intergenic
CTTGCAGTGTCGTTGGGAAT+AGG 0.356247 3_1:-55824790 Msa0363440:CDS
AGTGATGCTAATGAAACTTT+TGG 0.367161 3_1:-55827114 Msa0363440:CDS
TAATTCTCAGTCACAATATC+AGG 0.371536 3_1:-55825393 Msa0363440:intron
GTATCCTGCATCTATGGAAC+AGG 0.372103 3_1:+55824556 None:intergenic
GAGAAGGAGAAGGGAGAAGA+AGG 0.375233 3_1:+55827398 None:intergenic
TCACCGCGTGTTTGGTTTCG+TGG 0.386804 3_1:-55824419 Msa0363440:three_prime_UTR
TTCTCCTCCGTTTCATCTCA+CGG 0.389079 3_1:-55827369 Msa0363440:CDS
ATTCCAATGGCCACACCAAT+TGG 0.398109 3_1:+55824976 None:intergenic
ATATTAGGGACACAGTTTGC+TGG 0.410713 3_1:-55827174 Msa0363440:CDS
TATAGCTGTTGTTATGATAT+GGG 0.411672 3_1:-55824764 Msa0363440:CDS
AAAGATATTCACCGCGTGTT+TGG 0.417567 3_1:-55824427 Msa0363440:three_prime_UTR
CATAATTTCAAGTTTCCAAA+TGG 0.417718 3_1:+55824514 None:intergenic
GAAGAAGAGGAGAAGGAGAA+GGG 0.422071 3_1:+55827389 None:intergenic
CATGATAGTAGAGGTCGATT+AGG 0.426412 3_1:+55825033 None:intergenic
TTTGCTGGTGGAGTGTTTCT+GGG 0.429492 3_1:-55827159 Msa0363440:CDS
CAAGCCAACATGAACGCAAA+AGG 0.431464 3_1:+55827069 None:intergenic
AAGTTTCTTGCAGTGTCGTT+GGG 0.445877 3_1:-55824796 Msa0363440:CDS
CGGAGGAGAAGAAGAGGAGA+AGG 0.447645 3_1:+55827382 None:intergenic
AGAAGAAGAGGAGAAGGAGA+AGG 0.448899 3_1:+55827388 None:intergenic
TTGTGTTAACAGAGTTCTGC+TGG 0.452952 3_1:-55825276 Msa0363440:intron
GCGTTCATGTTGGCTTGTGC+TGG 0.456845 3_1:-55827063 Msa0363440:CDS
TTCGCAATCTCTAGTCCAAT+TGG 0.460160 3_1:-55824991 Msa0363440:CDS
GTCGACGTCGGCGTCGGCGT+CGG 0.478809 3_1:+55827329 None:intergenic
TTCTGTGTCGACGTCGGCGT+CGG 0.480243 3_1:+55827323 None:intergenic
CACAGGGTCATGTGGCCGAT+TGG 0.483842 3_1:-55824936 Msa0363440:CDS
GAAGTTTCTTGCAGTGTCGT+TGG 0.484647 3_1:-55824797 Msa0363440:CDS
AGTCCAATTGGTGTGGCCAT+TGG 0.487047 3_1:-55824979 Msa0363440:CDS
TCACATGATACTTATATGAC+TGG 0.488542 3_1:+55824479 None:intergenic
ATGAAACGGAGGAGAAGAAG+AGG 0.499576 3_1:+55827376 None:intergenic
CTTGCACCTAGTAGTTCAAT+CGG 0.503612 3_1:-55825237 Msa0363440:CDS
TCAGCAACACCACCATGATT+CGG 0.504877 3_1:+55826988 None:intergenic
CCATGGGCATTGCTCTCCTT+AGG 0.506992 3_1:-55825062 Msa0363440:CDS
GGTGGTGTTGCTGACGTTGA+AGG 0.513835 3_1:-55826979 Msa0363440:CDS
TTTCACCTTACGTGCTGAGA+TGG 0.514149 3_1:-55827212 Msa0363440:CDS
GAAAACAGAATGAGCACAAA+GGG 0.517694 3_1:+55825176 None:intergenic
GGGCATTGCTCTCCTTAGGA+TGG 0.519832 3_1:-55825058 Msa0363440:CDS
CCTTATAAAACAAATCCACT+TGG 0.529424 3_1:+55824645 None:intergenic
AGGTGCAAGATCAGTGTCAT+TGG 0.531839 3_1:+55825251 None:intergenic
GTGGCCACCGTGAGATGAAA+CGG 0.536254 3_1:+55827362 None:intergenic
GATTTGTAAGGAGAGTGTTA+CGG 0.542685 3_1:+55827484 None:intergenic
CAAACATTCAAAGGCCGACT+CGG 0.545714 3_1:-55824827 Msa0363440:CDS
GAGAGCAATGCCCATGGCGA+TGG 0.547861 3_1:+55825068 None:intergenic
AGTCCCTGTTCCATAGATGC+AGG 0.554824 3_1:-55824560 Msa0363440:three_prime_UTR
GTATCTCCGATTGAACTACT+AGG 0.558840 3_1:+55825231 None:intergenic
AAGCCAACATGAACGCAAAA+GGG 0.565393 3_1:+55827070 None:intergenic
GAGAAGGGAGAAGAAGGAGA+AGG 0.568570 3_1:+55827404 None:intergenic
TTGCAGGGGCAGACAAAGGA+AGG 0.574896 3_1:-55825427 Msa0363440:intron
TGTATTAGATTCCACAACAC+AGG 0.578420 3_1:-55824953 Msa0363440:CDS
ATATCTATGGGTCTAGCTTG+TGG 0.583623 3_1:-55824904 Msa0363440:CDS
AGATATAGCGAAAATCCAAT+CGG 0.583976 3_1:+55824921 None:intergenic
GTCGATTAGGAACCATCCTA+AGG 0.588650 3_1:+55825046 None:intergenic
CGAAAACAGAATGAGCACAA+AGG 0.590220 3_1:+55825175 None:intergenic
TGAAACACCAGCAATGAAAG+TGG 0.591004 3_1:+55827230 None:intergenic
AATATTCGCAGCCATCGCCA+TGG 0.593276 3_1:-55825079 Msa0363440:CDS
TCATTCCATCTCAGCACGTA+AGG 0.594342 3_1:+55827207 None:intergenic
GACTTGCCAAAATTGAAATG+AGG 0.596058 3_1:+55824579 None:intergenic
TCGGCCTTTGAATGTTTGTG+AGG 0.596171 3_1:+55824832 None:intergenic
TGTGCCTCACAAACATTCAA+AGG 0.597773 3_1:-55824836 Msa0363440:CDS
CAAATTGCAGGGGCAGACAA+AGG 0.599181 3_1:-55825431 Msa0363440:intron
GTTGCTGACGTTGAAGGTCA+AGG 0.601757 3_1:-55826973 Msa0363440:intron
GGAATCTAATACAATTCCAA+TGG 0.601962 3_1:+55824963 None:intergenic
GGCCACATGACCCTGTGTTG+TGG 0.602728 3_1:+55824942 None:intergenic
CCGTGACAAAAGCAGACGCA+TGG 0.606169 3_1:-55825131 Msa0363440:CDS
GGGAGCTTCTGTGTCGACGT+CGG 0.610482 3_1:+55827317 None:intergenic
ATATTCGCAGCCATCGCCAT+GGG 0.612305 3_1:-55825078 Msa0363440:CDS
AAAATAGATAGTCACGATCA+CGG 0.615458 3_1:+55824316 None:intergenic
AAACTTCATATAAGCCGAGT+CGG 0.619401 3_1:+55824813 None:intergenic
TTAGGGACACAGTTTGCTGG+TGG 0.625123 3_1:-55827171 Msa0363440:CDS
TTCCACAACACAGGGTCATG+TGG 0.634030 3_1:-55824944 Msa0363440:CDS
GCAGACAAAGGAAGGAGCAA+CGG 0.643713 3_1:-55825419 Msa0363440:CDS
CGGCGTCGGCATCGTCGTCG+TGG 0.647371 3_1:+55827343 None:intergenic
GATTGCGAATGCAAAAGCGT+AGG 0.649494 3_1:+55825005 None:intergenic
CCTAAGGAGAGCAATGCCCA+TGG 0.651165 3_1:+55825062 None:intergenic
AATCTCTAGTCCAATTGGTG+TGG 0.654473 3_1:-55824986 Msa0363440:CDS
TGTAAGGAGAGTGTTACGGT+AGG 0.660825 3_1:+55827488 None:intergenic
GTATTAGATTCCACAACACA+GGG 0.667227 3_1:-55824952 Msa0363440:CDS
TAGGCTGCACATGATAGTAG+AGG 0.668698 3_1:+55825024 None:intergenic
TTGGAGAAGCCGAATCATGG+TGG 0.694963 3_1:-55826997 Msa0363440:CDS
GCCACCGTGAGATGAAACGG+AGG 0.696618 3_1:+55827365 None:intergenic
TATCCTGCATCTATGGAACA+GGG 0.700160 3_1:+55824557 None:intergenic
TCCTCCGTTTCATCTCACGG+TGG 0.725211 3_1:-55827366 Msa0363440:CDS
TTGCCACGAAACCAAACACG+CGG 0.748783 3_1:+55824416 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTATTATATATTATTAC+AGG + chr3_1:55825108-55825127 None:intergenic 10.0%
!!! GAAAAGTATATATATTTATA+AGG - chr3_1:55825363-55825382 Msa0363440:intron 10.0%
!!! TAAATTTTTTCTTCGATTAT+AGG - chr3_1:55825303-55825322 Msa0363440:intron 15.0%
!!! AAATTTTTTCTTCGATTATA+GGG - chr3_1:55825304-55825323 Msa0363440:intron 15.0%
!!! ACCTTTTATATTTATCTATT+GGG + chr3_1:55825406-55825425 None:intergenic 15.0%
!!! TTTTATTTGTTGGAAAAATA+TGG - chr3_1:55825577-55825596 Msa0363440:intron 15.0%
!! AAGAAAAATTTATTAATTGC+TGG - chr3_1:55825707-55825726 Msa0363440:intron 15.0%
!! TATTCCATTATGATTATTTA+TGG - chr3_1:55825736-55825755 Msa0363440:intron 15.0%
!! TTGTAATAATGATGAAAATA+TGG + chr3_1:55826211-55826230 None:intergenic 15.0%
!!! ATATTTTCATCATTATTACA+AGG - chr3_1:55826210-55826229 Msa0363440:intron 15.0%
!!! TATCTTTCTTCATATTTTTA+AGG + chr3_1:55827310-55827329 None:intergenic 15.0%
!! AGAACAAAAATAGATTTGTA+AGG + chr3_1:55824281-55824300 None:intergenic 20.0%
!! TAATATTATGTTTGTGACTT+TGG - chr3_1:55824833-55824852 Msa0363440:CDS 20.0%
!! ATGATTATAATCATATGTGT+CGG + chr3_1:55824976-55824995 None:intergenic 20.0%
!! ATTATTACAGGAATAGAATT+AGG + chr3_1:55825096-55825115 None:intergenic 20.0%
!!! AAACAGTTTTAGAGATTATT+TGG + chr3_1:55825238-55825257 None:intergenic 20.0%
!! AATATACTAACTTTGTCTTT+CGG - chr3_1:55825274-55825293 Msa0363440:intron 20.0%
!! AATCGAAGAAAAAATTTAGA+GGG + chr3_1:55825301-55825320 None:intergenic 20.0%
!! TAATCGAAGAAAAAATTTAG+AGG + chr3_1:55825302-55825321 None:intergenic 20.0%
!!! AAATTGAAGGAAAATTTTAG+AGG - chr3_1:55825332-55825351 Msa0363440:intron 20.0%
!!! TATTGGGTTAAATATGTTTT+TGG + chr3_1:55825390-55825409 None:intergenic 20.0%
!! ACCCAATAGATAAATATAAA+AGG - chr3_1:55825402-55825421 Msa0363440:CDS 20.0%
!!! GACCTTTTATATTTATCTAT+TGG + chr3_1:55825407-55825426 None:intergenic 20.0%
!!! TAAACTTTAGTTGTTTTTGT+TGG - chr3_1:55825475-55825494 Msa0363440:intron 20.0%
!!! GAAAAATATGGTTACAATTT+TGG - chr3_1:55825589-55825608 Msa0363440:intron 20.0%
!!! TACAATAGTCTTAACTATAA+AGG - chr3_1:55825669-55825688 Msa0363440:intron 20.0%
!! ATCACCATAAATAATCATAA+TGG + chr3_1:55825743-55825762 None:intergenic 20.0%
!! TTCATGTCTTTATGAATATT+TGG - chr3_1:55826033-55826052 Msa0363440:intron 20.0%
!! AAATTCAATTCTGATATTTG+CGG - chr3_1:55826063-55826082 Msa0363440:intron 20.0%
!! TTTCTGTTAAAAATTCGATT+TGG + chr3_1:55826172-55826191 None:intergenic 20.0%
!! TAATAATGATGAAAATATGG+TGG + chr3_1:55826208-55826227 None:intergenic 20.0%
!!! TTGTGTTATTTCTTCTCTTT+TGG - chr3_1:55824734-55824753 Msa0363440:three_prime_UTR 25.0%
!!! TGATTTTAGTATACACCTTT+AGG - chr3_1:55824875-55824894 Msa0363440:CDS 25.0%
! TTATAGGGACTAAAAATTGA+AGG - chr3_1:55825319-55825338 Msa0363440:intron 25.0%
!!! TAAAAGGTCCTTTTTGTTTT+AGG - chr3_1:55825418-55825437 Msa0363440:CDS 25.0%
!!! AAAAGGTCCTTTTTGTTTTA+GGG - chr3_1:55825419-55825438 Msa0363440:CDS 25.0%
! ACTTTATCCCTAAAACAAAA+AGG + chr3_1:55825429-55825448 None:intergenic 25.0%
!!! TTTTAGGGATAAAGTGATTA+TGG - chr3_1:55825434-55825453 Msa0363440:intron 25.0%
!!! ACTGTGTTGTTTTTATTTGT+TGG - chr3_1:55825567-55825586 Msa0363440:intron 25.0%
!! AAATATGGTTACAATTTTGG+TGG - chr3_1:55825592-55825611 Msa0363440:intron 25.0%
!! ATAGTCTTAACTATAAAGGT+TGG - chr3_1:55825673-55825692 Msa0363440:intron 25.0%
! TCAACCAAAAAAAAGATAAG+TGG - chr3_1:55825802-55825821 Msa0363440:intron 25.0%
!!! TCAACCACTTATCTTTTTTT+TGG + chr3_1:55825809-55825828 None:intergenic 25.0%
! ATTATATTCTTCCAACTGTA+AGG + chr3_1:55825891-55825910 None:intergenic 25.0%
! CTCTATAGTTGGATAAAAAT+CGG - chr3_1:55825919-55825938 Msa0363440:intron 25.0%
!!! ACAAAGCTACTTTCTTTTTT+TGG - chr3_1:55826294-55826313 Msa0363440:intron 25.0%
!! AATAAACCATCTTTTTGCTA+AGG - chr3_1:55826887-55826906 Msa0363440:intron 25.0%
!! ATAAACCATCTTTTTGCTAA+GGG - chr3_1:55826888-55826907 Msa0363440:intron 25.0%
! TTATAGCTGTTGTTATGATA+TGG - chr3_1:55826985-55827004 Msa0363440:CDS 25.0%
! TATAGCTGTTGTTATGATAT+GGG - chr3_1:55826986-55827005 Msa0363440:CDS 25.0%
!! ATTTTGCCTCATTTCAATTT+TGG - chr3_1:55827165-55827184 Msa0363440:CDS 25.0%
!!! CATAATTTCAAGTTTCCAAA+TGG + chr3_1:55827239-55827258 None:intergenic 25.0%
! TCAGGATTAAGGATTTTGAA+CGG + chr3_1:55824467-55824486 None:intergenic 30.0%
! GTATACTTTTGTCAGGATTA+AGG + chr3_1:55824478-55824497 None:intergenic 30.0%
! TTAAGCAGTATACTTTTGTC+AGG + chr3_1:55824485-55824504 None:intergenic 30.0%
! AATGAAGCGTTCTTGATATT+AGG - chr3_1:55824561-55824580 Msa0363440:three_prime_UTR 30.0%
! ATGAAGCGTTCTTGATATTA+GGG - chr3_1:55824562-55824581 Msa0363440:three_prime_UTR 30.0%
! AGTGATGCTAATGAAACTTT+TGG - chr3_1:55824636-55824655 Msa0363440:three_prime_UTR 30.0%
CATAATCGCTTATATCCTAA+AGG + chr3_1:55824893-55824912 None:intergenic 30.0%
! AGTCAAATTGTTTTCGCATA+AGG - chr3_1:55825142-55825161 Msa0363440:CDS 30.0%
TTTGTTGGATATGTTCTTCT+AGG - chr3_1:55825490-55825509 Msa0363440:intron 30.0%
TTGTTGGATATGTTCTTCTA+GGG - chr3_1:55825491-55825510 Msa0363440:intron 30.0%
AATATTCGCATCTCTATAGT+TGG - chr3_1:55825908-55825927 Msa0363440:intron 30.0%
!!! TTTTTTTGGTGCAAATTGCA+GGG - chr3_1:55826308-55826327 Msa0363440:intron 30.0%
TAATTCTCAGTCACAATATC+AGG - chr3_1:55826357-55826376 Msa0363440:intron 30.0%
CAGTTAAATTAGTGATGACA+AGG + chr3_1:55826442-55826461 None:intergenic 30.0%
GGAATCTAATACAATTCCAA+TGG + chr3_1:55826790-55826809 None:intergenic 30.0%
AGATATAGCGAAAATCCAAT+CGG + chr3_1:55826832-55826851 None:intergenic 30.0%
! TTGGATTTTCGCTATATCTA+TGG - chr3_1:55826833-55826852 Msa0363440:intron 30.0%
! TGGATTTTCGCTATATCTAT+GGG - chr3_1:55826834-55826853 Msa0363440:intron 30.0%
CCTTATAAAACAAATCCACT+TGG + chr3_1:55827108-55827127 None:intergenic 30.0%
!!! CCAAGTGGATTTGTTTTATA+AGG - chr3_1:55827105-55827124 Msa0363440:CDS 30.0%
! TTCCATACTCATTTTCCATT+TGG - chr3_1:55827221-55827240 Msa0363440:CDS 30.0%
TTCCAAATGGAAAATGAGTA+TGG + chr3_1:55827226-55827245 None:intergenic 30.0%
TCACATGATACTTATATGAC+TGG + chr3_1:55827274-55827293 None:intergenic 30.0%
!!! TTTTTAGCTTCTGAAAACCA+CGG + chr3_1:55827393-55827412 None:intergenic 30.0%
AAAATAGATAGTCACGATCA+CGG + chr3_1:55827437-55827456 None:intergenic 30.0%
!! GATTTGTAAGGAGAGTGTTA+CGG + chr3_1:55824269-55824288 None:intergenic 35.0%
!! TTTGTGACTTTGGTCTTGTT+TGG - chr3_1:55824843-55824862 Msa0363440:CDS 35.0%
CATAATATGTAACCGACAAC+AGG + chr3_1:55824946-55824965 None:intergenic 35.0%
! ATAATCATATGTGTCGGTGT+GGG + chr3_1:55824970-55824989 None:intergenic 35.0%
! TATAATCATATGTGTCGGTG+TGG + chr3_1:55824971-55824990 None:intergenic 35.0%
!! TATCAGTATCGATTTGTCTG+TGG - chr3_1:55825024-55825043 Msa0363440:CDS 35.0%
!! TGGTTACAATTTTGGTGGTT+TGG - chr3_1:55825597-55825616 Msa0363440:intron 35.0%
TTGTGAGCTAGAAGGATAAA+TGG - chr3_1:55825771-55825790 Msa0363440:intron 35.0%
! ACAAGACTTTGAAAAGTCCA+AGG + chr3_1:55825838-55825857 None:intergenic 35.0%
GTGCTGTACAAAGATATTTG+TGG - chr3_1:55825856-55825875 Msa0363440:intron 35.0%
GTTAGACAAGGTGAATCTTA+AGG + chr3_1:55826274-55826293 None:intergenic 35.0%
!! AAGTAGCTTTGTGTTAGACA+AGG + chr3_1:55826286-55826305 None:intergenic 35.0%
!!! CTTTTTTTGGTGCAAATTGC+AGG - chr3_1:55826307-55826326 Msa0363440:intron 35.0%
!!! TTTTTTGGTGCAAATTGCAG+GGG - chr3_1:55826309-55826328 Msa0363440:intron 35.0%
GAAAACAGAATGAGCACAAA+GGG + chr3_1:55826577-55826596 None:intergenic 35.0%
TGTATTAGATTCCACAACAC+AGG - chr3_1:55826797-55826816 Msa0363440:intron 35.0%
GTATTAGATTCCACAACACA+GGG - chr3_1:55826798-55826817 Msa0363440:intron 35.0%
CATAACCCTTAGCAAAAAGA+TGG + chr3_1:55826896-55826915 None:intergenic 35.0%
AAACTTCATATAAGCCGAGT+CGG + chr3_1:55826940-55826959 None:intergenic 35.0%
!!! TCTTGCTTCTGAAGCATTTT+AGG + chr3_1:55827015-55827034 None:intergenic 35.0%
!!! ACGTTTTTTAGTTAGCCAAG+TGG - chr3_1:55827090-55827109 Msa0363440:CDS 35.0%
GACTTGCCAAAATTGAAATG+AGG + chr3_1:55827174-55827193 None:intergenic 35.0%
AAACTTGTATCCTGCATCTA+TGG + chr3_1:55827203-55827222 None:intergenic 35.0%
TCTGAAAACCACGGAAAAAT+GGG + chr3_1:55827384-55827403 None:intergenic 35.0%
! TTCTGAAAACCACGGAAAAA+TGG + chr3_1:55827385-55827404 None:intergenic 35.0%
! CAATCGTTAAGTGCATGTTT+TGG + chr3_1:55827461-55827480 None:intergenic 35.0%
! GGATTAAGGATTTTGAACGG+AGG + chr3_1:55824464-55824483 None:intergenic 40.0%
TGAAACACCAGCAATGAAAG+TGG + chr3_1:55824523-55824542 None:intergenic 40.0%
ATATTAGGGACACAGTTTGC+TGG - chr3_1:55824576-55824595 Msa0363440:three_prime_UTR 40.0%
! ATACCCTTTTGCGTTCATGT+TGG - chr3_1:55824677-55824696 Msa0363440:three_prime_UTR 40.0%
AAGCCAACATGAACGCAAAA+GGG + chr3_1:55824683-55824702 None:intergenic 40.0%
!! TGGTGGTTTGGTACTTGATT+CGG - chr3_1:55825609-55825628 Msa0363440:intron 40.0%
! ATAGTGACTTGTGAGCTAGA+AGG - chr3_1:55825763-55825782 Msa0363440:intron 40.0%
GCTAGAAGGATAAATGGTTG+AGG - chr3_1:55825777-55825796 Msa0363440:intron 40.0%
!! TAAGTGGTTGACTTGATCCT+TGG - chr3_1:55825818-55825837 Msa0363440:intron 40.0%
CTTCCAACTGTAAGGAATCT+AGG + chr3_1:55825883-55825902 None:intergenic 40.0%
GCTGATAGATGAAGATCAGA+TGG + chr3_1:55826001-55826020 None:intergenic 40.0%
TTGTGTTAACAGAGTTCTGC+TGG - chr3_1:55826474-55826493 Msa0363440:intron 40.0%
CTTGCACCTAGTAGTTCAAT+CGG - chr3_1:55826513-55826532 Msa0363440:intron 40.0%
GTATCTCCGATTGAACTACT+AGG + chr3_1:55826522-55826541 None:intergenic 40.0%
CGAAAACAGAATGAGCACAA+AGG + chr3_1:55826578-55826597 None:intergenic 40.0%
! TTGTGCTCATTCTGTTTTCG+AGG - chr3_1:55826578-55826597 Msa0363440:intron 40.0%
! TGTGCTCATTCTGTTTTCGA+GGG - chr3_1:55826579-55826598 Msa0363440:intron 40.0%
!! GTTTTCGAGGGTTTAGCAAT+TGG - chr3_1:55826591-55826610 Msa0363440:intron 40.0%
CATGATAGTAGAGGTCGATT+AGG + chr3_1:55826720-55826739 None:intergenic 40.0%
TTCGCAATCTCTAGTCCAAT+TGG - chr3_1:55826759-55826778 Msa0363440:intron 40.0%
AATCTCTAGTCCAATTGGTG+TGG - chr3_1:55826764-55826783 Msa0363440:intron 40.0%
! ATATCTATGGGTCTAGCTTG+TGG - chr3_1:55826846-55826865 Msa0363440:intron 40.0%
TGTGCCTCACAAACATTCAA+AGG - chr3_1:55826914-55826933 Msa0363440:intron 40.0%
! AAGTTTCTTGCAGTGTCGTT+GGG - chr3_1:55826954-55826973 Msa0363440:intron 40.0%
TATCCTGCATCTATGGAACA+GGG + chr3_1:55827196-55827215 None:intergenic 40.0%
AAAGATATTCACCGCGTGTT+TGG - chr3_1:55827323-55827342 Msa0363440:CDS 40.0%
GAAGAAGAGGAGAAGGAGAA+GGG + chr3_1:55824364-55824383 None:intergenic 45.0%
AGAAGAAGAGGAGAAGGAGA+AGG + chr3_1:55824365-55824384 None:intergenic 45.0%
ATGAAACGGAGGAGAAGAAG+AGG + chr3_1:55824377-55824396 None:intergenic 45.0%
TTCTCCTCCGTTTCATCTCA+CGG - chr3_1:55824381-55824400 Msa0363440:three_prime_UTR 45.0%
! GATTTTGAACGGAGGTTGTG+GGG + chr3_1:55824456-55824475 None:intergenic 45.0%
! GGATTTTGAACGGAGGTTGT+GGG + chr3_1:55824457-55824476 None:intergenic 45.0%
! AGGATTTTGAACGGAGGTTG+TGG + chr3_1:55824458-55824477 None:intergenic 45.0%
! TTCTTCGCCACTTTCATTGC+TGG - chr3_1:55824513-55824532 Msa0363440:three_prime_UTR 45.0%
TTTCACCTTACGTGCTGAGA+TGG - chr3_1:55824538-55824557 Msa0363440:three_prime_UTR 45.0%
TCATTCCATCTCAGCACGTA+AGG + chr3_1:55824546-55824565 None:intergenic 45.0%
! TTTGCTGGTGGAGTGTTTCT+GGG - chr3_1:55824591-55824610 Msa0363440:three_prime_UTR 45.0%
CAAGCCAACATGAACGCAAA+AGG + chr3_1:55824684-55824703 None:intergenic 45.0%
!! CTTTTGGAGAAGCCGAATCA+TGG - chr3_1:55824750-55824769 Msa0363440:exon 45.0%
TCAGCAACACCACCATGATT+CGG + chr3_1:55824765-55824784 None:intergenic 45.0%
GGACCTAGATTCCTTACAGT+TGG - chr3_1:55825877-55825896 Msa0363440:intron 45.0%
! GCGGTCTTGTCATGTGAATT+TGG - chr3_1:55826082-55826101 Msa0363440:intron 45.0%
CACGAACATGACAATGACTG+TGG + chr3_1:55826138-55826157 None:intergenic 45.0%
AGGTGCAAGATCAGTGTCAT+TGG + chr3_1:55826502-55826521 None:intergenic 45.0%
CAGACGCATGGAAAGCTTTA+TGG - chr3_1:55826631-55826650 Msa0363440:intron 45.0%
GTCGATTAGGAACCATCCTA+AGG + chr3_1:55826707-55826726 None:intergenic 45.0%
TAGGCTGCACATGATAGTAG+AGG + chr3_1:55826729-55826748 None:intergenic 45.0%
! GATTGCGAATGCAAAAGCGT+AGG + chr3_1:55826748-55826767 None:intergenic 45.0%
ATTCCAATGGCCACACCAAT+TGG + chr3_1:55826777-55826796 None:intergenic 45.0%
TCGGCCTTTGAATGTTTGTG+AGG + chr3_1:55826921-55826940 None:intergenic 45.0%
CAAACATTCAAAGGCCGACT+CGG - chr3_1:55826923-55826942 Msa0363440:intron 45.0%
GAAGTTTCTTGCAGTGTCGT+TGG - chr3_1:55826953-55826972 Msa0363440:intron 45.0%
GTATCCTGCATCTATGGAAC+AGG + chr3_1:55827197-55827216 None:intergenic 45.0%
ACCACGGAAAAATGGGACTT+GGG + chr3_1:55827377-55827396 None:intergenic 45.0%
AACCACGGAAAAATGGGACT+TGG + chr3_1:55827378-55827397 None:intergenic 45.0%
!!! AATTAATAAATTTTTCTTTA+TGG + chr3_1:55825705-55825724 None:intergenic 5.0%
GAGAAGGGAGAAGAAGGAGA+AGG + chr3_1:55824349-55824368 None:intergenic 50.0%
GAGAAGGAGAAGGGAGAAGA+AGG + chr3_1:55824355-55824374 None:intergenic 50.0%
!! TTAGGGACACAGTTTGCTGG+TGG - chr3_1:55824579-55824598 Msa0363440:three_prime_UTR 50.0%
! GTTTGCTGGTGGAGTGTTTC+TGG - chr3_1:55824590-55824609 Msa0363440:three_prime_UTR 50.0%
TTGGAGAAGCCGAATCATGG+TGG - chr3_1:55824753-55824772 Msa0363440:exon 50.0%
GTTGCTGACGTTGAAGGTCA+AGG - chr3_1:55824777-55824796 Msa0363440:CDS 50.0%
GATACTCCTCGTCCTGTTGT+CGG - chr3_1:55824931-55824950 Msa0363440:CDS 50.0%
ATGTAACCGACAACAGGACG+AGG + chr3_1:55824940-55824959 None:intergenic 50.0%
CAAATTGCAGGGGCAGACAA+AGG - chr3_1:55826319-55826338 Msa0363440:intron 50.0%
GCAGACAAAGGAAGGAGCAA+CGG - chr3_1:55826331-55826350 Msa0363440:intron 50.0%
!! CCATGCGTCTGCTTTTGTCA+CGG + chr3_1:55826622-55826641 None:intergenic 50.0%
AATATTCGCAGCCATCGCCA+TGG - chr3_1:55826671-55826690 Msa0363440:intron 50.0%
ATATTCGCAGCCATCGCCAT+GGG - chr3_1:55826672-55826691 Msa0363440:intron 50.0%
AGTCCAATTGGTGTGGCCAT+TGG - chr3_1:55826771-55826790 Msa0363440:intron 50.0%
TTCCACAACACAGGGTCATG+TGG - chr3_1:55826806-55826825 Msa0363440:intron 50.0%
! CTTGCAGTGTCGTTGGGAAT+AGG - chr3_1:55826960-55826979 Msa0363440:intron 50.0%
AGTCCCTGTTCCATAGATGC+AGG - chr3_1:55827190-55827209 Msa0363440:CDS 50.0%
TTGCCACGAAACCAAACACG+CGG + chr3_1:55827337-55827356 None:intergenic 50.0%
!! TCCCAAGTCCCATTTTTCCG+TGG - chr3_1:55827373-55827392 Msa0363440:CDS 50.0%
CGGAGGAGAAGAAGAGGAGA+AGG + chr3_1:55824371-55824390 None:intergenic 55.0%
TCCTCCGTTTCATCTCACGG+TGG - chr3_1:55824384-55824403 Msa0363440:three_prime_UTR 55.0%
GTGGCCACCGTGAGATGAAA+CGG + chr3_1:55824391-55824410 None:intergenic 55.0%
!! GCGTTCATGTTGGCTTGTGC+TGG - chr3_1:55824687-55824706 Msa0363440:three_prime_UTR 55.0%
!! GGTGGTGTTGCTGACGTTGA+AGG - chr3_1:55824771-55824790 Msa0363440:CDS 55.0%
GTCTGTGGCGTGTTCTGTGT+CGG - chr3_1:55825039-55825058 Msa0363440:CDS 55.0%
TTGCAGGGGCAGACAAAGGA+AGG - chr3_1:55826323-55826342 Msa0363440:intron 55.0%
CCGTGACAAAAGCAGACGCA+TGG - chr3_1:55826619-55826638 Msa0363440:intron 55.0%
CCTAAGGAGAGCAATGCCCA+TGG + chr3_1:55826691-55826710 None:intergenic 55.0%
! CCATGGGCATTGCTCTCCTT+AGG - chr3_1:55826688-55826707 Msa0363440:intron 55.0%
! GGGCATTGCTCTCCTTAGGA+TGG - chr3_1:55826692-55826711 Msa0363440:intron 55.0%
! TCACCGCGTGTTTGGTTTCG+TGG - chr3_1:55827331-55827350 Msa0363440:CDS 55.0%
GCCACCGTGAGATGAAACGG+AGG + chr3_1:55824388-55824407 None:intergenic 60.0%
! TTCTGTGTCGACGTCGGCGT+CGG + chr3_1:55824430-55824449 None:intergenic 60.0%
! GGGAGCTTCTGTGTCGACGT+CGG + chr3_1:55824436-55824455 None:intergenic 60.0%
GAGAGCAATGCCCATGGCGA+TGG + chr3_1:55826685-55826704 None:intergenic 60.0%
GGCCACATGACCCTGTGTTG+TGG + chr3_1:55826811-55826830 None:intergenic 60.0%
CACAGGGTCATGTGGCCGAT+TGG - chr3_1:55826814-55826833 Msa0363440:intron 60.0%
!! CGGCGTCGGCATCGTCGTCG+TGG + chr3_1:55824410-55824429 None:intergenic 75.0%
!! GTCGACGTCGGCGTCGGCGT+CGG + chr3_1:55824424-55824443 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 55824264 55827508 55824264 ID=Msa0363440;Name=Msa0363440
chr3_1 mRNA 55824264 55827508 55824264 ID=Msa0363440-mRNA-1;Parent=Msa0363440;Name=Msa0363440-mRNA-1;_AED=0.13;_eAED=0.13;_QI=63|1|1|1|1|1|3|492|350
chr3_1 exon 55824264 55825286 55824264 ID=Msa0363440-mRNA-1:exon:10237;Parent=Msa0363440-mRNA-1
chr3_1 exon 55825394 55825443 55825394 ID=Msa0363440-mRNA-1:exon:10236;Parent=Msa0363440-mRNA-1
chr3_1 exon 55826974 55827508 55826974 ID=Msa0363440-mRNA-1:exon:10235;Parent=Msa0363440-mRNA-1
chr3_1 five_prime_UTR 55827446 55827508 55827446 ID=Msa0363440-mRNA-1:five_prime_utr;Parent=Msa0363440-mRNA-1
chr3_1 CDS 55826974 55827445 55826974 ID=Msa0363440-mRNA-1:cds;Parent=Msa0363440-mRNA-1
chr3_1 CDS 55825394 55825443 55825394 ID=Msa0363440-mRNA-1:cds;Parent=Msa0363440-mRNA-1
chr3_1 CDS 55824756 55825286 55824756 ID=Msa0363440-mRNA-1:cds;Parent=Msa0363440-mRNA-1
chr3_1 three_prime_UTR 55824264 55824755 55824264 ID=Msa0363440-mRNA-1:three_prime_utr;Parent=Msa0363440-mRNA-1
Gene Sequence

>Msa0363440

ATGTCTTTCTCTCTTCGAACCTTCTCCTTCTTCTCCCTTCTCCTTCTCCTCTTCTTCTCCTCCGTTTCATCTCACGGTGGCCACGACGACGATGCCGACGCCGACGCCGACGTCGACACAGAAGCTCCCCACAACCTCCGTTCAAAATCCTTAATCCTGACAAAAGTATACTGCTTAATAGTAATCTTCTTCGCCACTTTCATTGCTGGTGTTTCACCTTACGTGCTGAGATGGAATGAAGCGTTCTTGATATTAGGGACACAGTTTGCTGGTGGAGTGTTTCTGGGAACTGCTTTGATGCATTTTCTTAGTGATGCTAATGAAACTTTTGGTGATTTGACTGATAAAGAATACCCTTTTGCGTTCATGTTGGCTTGTGCTGGTTATTTGATTACTATGCTTGCTGATTGTGTTATTTCTTCTCTTTTGGAGAAGCCGAATCATGGTGGTGTTGCTGACGTTGAAGGTCAAGGGGCAGACAAAGGAAGGAGCAACGGTGTTAATTCTCAGTCACAATATCAGAGTTCTGCTGGCACCAATGACACTGATCTTGCACCTAGTAGTTCAATCGGAGATACTGTATACATATTTATTTATGTATACATAATCGCCCTTTGTGCTCATTCTGTTTTCGAGGGTTTAGCAATTGGCGTTTCCGTGACAAAAGCAGACGCATGGAAAGCTTTATGGACAATCTGTTTGCACAAAATATTCGCAGCCATCGCCATGGGCATTGCTCTCCTTAGGATGGTTCCTAATCGACCTCTACTATCATGTGCAGCCTACGCTTTTGCATTCGCAATCTCTAGTCCAATTGGTGTGGCCATTGGAATTGTATTAGATTCCACAACACAGGGTCATGTGGCCGATTGGATTTTCGCTATATCTATGGGTCTAGCTTGTGGTGTGTTTATATATGTTTCAATAAACCATCTTTTTGCTAAGGGTTATGTGCCTCACAAACATTCAAAGGCCGACTCGGCTTATATGAAGTTTCTTGCAGTGTCGTTGGGAATAGGAGTTATAGCTGTTGTTATGATATGGGATACCTAA

Protein sequence

>Msa0363440

MSFSLRTFSFFSLLLLLFFSSVSSHGGHDDDADADADVDTEAPHNLRSKSLILTKVYCLIVIFFATFIAGVSPYVLRWNEAFLILGTQFAGGVFLGTALMHFLSDANETFGDLTDKEYPFAFMLACAGYLITMLADCVISSLLEKPNHGGVADVEGQGADKGRSNGVNSQSQYQSSAGTNDTDLAPSSSIGDTVYIFIYVYIIALCAHSVFEGLAIGVSVTKADAWKALWTICLHKIFAAIAMGIALLRMVPNRPLLSCAAYAFAFAISSPIGVAIGIVLDSTTQGHVADWIFAISMGLACGVFIYVSINHLFAKGYVPHKHSKADSAYMKFLAVSLGIGVIAVVMIWDT*