Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648250 | XP_003607481.2 | 96.154 | 468 | 18 | 0 | 1 | 468 | 1 | 468 | 0.0 | 931 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648250 | sp|Q5KS41|WSD11_ARATH | 28.541 | 473 | 309 | 9 | 9 | 461 | 15 | 478 | 6.55e-58 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648250 | G7JTU9 | 95.085 | 468 | 23 | 0 | 1 | 468 | 1 | 468 | 0.0 | 921 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017420 | Msa0648250 | 0.830528 | 2.791193e-55 | -8.615850e-47 |
| Msa0050240 | Msa0648250 | 0.806852 | 6.726404e-50 | -8.615850e-47 |
| Msa0063100 | Msa0648250 | 0.814437 | 1.541560e-51 | -8.615850e-47 |
| Msa0104390 | Msa0648250 | 0.808199 | 3.482784e-50 | -8.615850e-47 |
| Msa0648150 | Msa0648250 | 0.963766 | 1.728048e-122 | -8.615850e-47 |
| Msa0648250 | Msa0691190 | 0.947152 | 1.171175e-105 | -8.615850e-47 |
| Msa0648250 | Msa0718920 | 0.809025 | 2.320299e-50 | -8.615850e-47 |
| Msa0648250 | Msa0752580 | 0.821015 | 5.053473e-53 | -8.615850e-47 |
| Msa0648250 | Msa0754500 | 0.815049 | 1.128086e-51 | -8.615850e-47 |
| Msa0648250 | Msa0813030 | 0.807144 | 5.835548e-50 | -8.615850e-47 |
| Msa0648250 | Msa0819740 | 0.806447 | 8.188633e-50 | -8.615850e-47 |
| Msa0648250 | Msa0830900 | 0.805576 | 1.248732e-49 | -8.615850e-47 |
| Msa0648250 | Msa0853500 | 0.814716 | 1.337248e-51 | -8.615850e-47 |
| Msa0648250 | Msa0883350 | 0.812190 | 4.803301e-51 | -8.615850e-47 |
| Msa0648250 | Msa0883390 | 0.809802 | 1.580154e-50 | -8.615850e-47 |
| Msa0648250 | Msa0883410 | 0.835821 | 1.342322e-56 | -8.615850e-47 |
| Msa0648250 | Msa0883660 | 0.802571 | 5.267835e-49 | -8.615850e-47 |
| Msa0648250 | Msa0883670 | 0.811229 | 7.770824e-51 | -8.615850e-47 |
| Msa0648250 | Msa0957800 | 0.804544 | 2.052798e-49 | -8.615850e-47 |
| Msa0648250 | Msa1009150 | 0.841355 | 4.997919e-58 | -8.615850e-47 |
| Msa0648250 | Msa1009170 | 0.839475 | 1.550142e-57 | -8.615850e-47 |
| Msa0648250 | Msa1009220 | 0.824487 | 7.858279e-54 | -8.615850e-47 |
| Msa0648250 | Msa1033670 | 0.817724 | 2.842578e-52 | -8.615850e-47 |
| Msa0648250 | Msa1098350 | 0.848340 | 6.522322e-60 | -8.615850e-47 |
| Msa0648250 | Msa1135660 | 0.812561 | 3.985893e-51 | -8.615850e-47 |
| Msa0648250 | Msa1138450 | 0.806221 | 9.139582e-50 | -8.615850e-47 |
| Msa0648250 | Msa1138480 | 0.835880 | 1.296766e-56 | -8.615850e-47 |
| Msa0648250 | Msa1138490 | 0.820996 | 5.104403e-53 | -8.615850e-47 |
| Msa0648250 | Msa1140460 | 0.808014 | 3.813191e-50 | -8.615850e-47 |
| Msa0648250 | Msa1191390 | 0.813844 | 2.083939e-51 | -8.615850e-47 |
| Msa0648250 | Msa1204430 | 0.834494 | 2.902296e-56 | -8.615850e-47 |
| Msa0648250 | Msa1212740 | 0.802532 | 5.364766e-49 | -8.615850e-47 |
| Msa0648250 | Msa1246560 | 0.805277 | 1.442614e-49 | -8.615850e-47 |
| Msa0648250 | Msa1247720 | 0.812600 | 3.907130e-51 | -8.615850e-47 |
| Msa0648250 | Msa1278850 | 0.807343 | 5.294211e-50 | -8.615850e-47 |
| Msa0648250 | Msa1279310 | 0.835587 | 1.538900e-56 | -8.615850e-47 |
| Msa0648250 | Msa1285830 | 0.818166 | 2.258924e-52 | -8.615850e-47 |
| Msa0648250 | Msa1296650 | 0.852326 | 4.969225e-61 | -8.615850e-47 |
| Msa0648250 | Msa1328600 | 0.816409 | 5.613470e-52 | -8.615850e-47 |
| Msa0648250 | Msa1445250 | 0.802601 | 5.192853e-49 | -8.615850e-47 |
| Msa0648250 | Msa1459170 | 0.809755 | 1.617701e-50 | -8.615850e-47 |
| Msa0151860 | Msa0648250 | 0.806327 | 8.680888e-50 | -8.615850e-47 |
| Msa0153440 | Msa0648250 | 0.804062 | 2.586260e-49 | -8.615850e-47 |
| Msa0155030 | Msa0648250 | 0.823963 | 1.043557e-53 | -8.615850e-47 |
| Msa0164700 | Msa0648250 | 0.800939 | 1.138902e-48 | -8.615850e-47 |
| Msa0228080 | Msa0648250 | 0.802500 | 5.446483e-49 | -8.615850e-47 |
| Msa0228090 | Msa0648250 | 0.827362 | 1.631241e-54 | -8.615850e-47 |
| Msa0389050 | Msa0648250 | 0.815036 | 1.135766e-51 | -8.615850e-47 |
| Msa0391080 | Msa0648250 | 0.813791 | 2.140228e-51 | -8.615850e-47 |
| Msa0397040 | Msa0648250 | 0.804319 | 2.286977e-49 | -8.615850e-47 |
| Msa0397050 | Msa0648250 | 0.810607 | 1.059619e-50 | -8.615850e-47 |
| Msa0410960 | Msa0648250 | 0.815976 | 7.012804e-52 | -8.615850e-47 |
| Msa0439700 | Msa0648250 | 0.817186 | 3.757938e-52 | -8.615850e-47 |
| Msa0444310 | Msa0648250 | 0.812055 | 5.140318e-51 | -8.615850e-47 |
| Msa0452010 | Msa0648250 | 0.813659 | 2.288304e-51 | -8.615850e-47 |
| Msa0457370 | Msa0648250 | 0.802742 | 4.856421e-49 | -8.615850e-47 |
| Msa0254190 | Msa0648250 | 0.800604 | 1.333062e-48 | -8.615850e-47 |
| Msa0363440 | Msa0648250 | 0.834509 | 2.876063e-56 | -8.615850e-47 |
| Msa0503620 | Msa0648250 | 0.805725 | 1.162281e-49 | -8.615850e-47 |
| Msa0554400 | Msa0648250 | 0.959620 | 1.211292e-117 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648250 | MtrunA17_Chr4g0040261 | 92.657 | 463 | 33 | 1 | 1 | 462 | 34 | 496 | 0.0 | 870 |
| Msa0648250 | MtrunA17_Chr4g0040271 | 96.411 | 418 | 15 | 0 | 1 | 418 | 1 | 418 | 0.0 | 839 |
| Msa0648250 | MtrunA17_Chr4g0040251 | 84.861 | 469 | 69 | 2 | 1 | 467 | 1 | 469 | 0.0 | 828 |
| Msa0648250 | MtrunA17_Chr4g0040221 | 68.094 | 467 | 142 | 4 | 1 | 463 | 1 | 464 | 0.0 | 628 |
| Msa0648250 | MtrunA17_Chr4g0040231 | 62.099 | 467 | 168 | 4 | 4 | 463 | 5 | 469 | 0.0 | 595 |
| Msa0648250 | MtrunA17_Chr4g0040001 | 63.248 | 468 | 164 | 5 | 1 | 461 | 1 | 467 | 0.0 | 588 |
| Msa0648250 | MtrunA17_Chr7g0217051 | 59.565 | 460 | 184 | 2 | 5 | 462 | 7 | 466 | 0.0 | 581 |
| Msa0648250 | MtrunA17_Chr4g0040011 | 63.341 | 431 | 150 | 5 | 1 | 424 | 9 | 438 | 0.0 | 542 |
| Msa0648250 | MtrunA17_Chr7g0248011 | 51.327 | 452 | 218 | 2 | 5 | 455 | 7 | 457 | 6.24e-164 | 471 |
| Msa0648250 | MtrunA17_Chr6g0457271 | 57.103 | 359 | 148 | 5 | 63 | 416 | 2 | 359 | 6.56e-145 | 419 |
| Msa0648250 | MtrunA17_Chr6g0457281 | 52.577 | 291 | 132 | 3 | 85 | 370 | 1 | 290 | 1.42e-107 | 321 |
| Msa0648250 | MtrunA17_Chr1g0147071 | 27.155 | 464 | 307 | 11 | 5 | 447 | 6 | 459 | 8.55e-49 | 174 |
| Msa0648250 | MtrunA17_Chr5g0393471 | 27.612 | 268 | 186 | 5 | 189 | 453 | 65 | 327 | 5.92e-24 | 102 |
| Msa0648250 | MtrunA17_Chr6g0457291 | 51.351 | 74 | 36 | 0 | 393 | 466 | 1 | 74 | 2.74e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648250 | AT5G53390.1 | 28.541 | 473 | 309 | 9 | 9 | 461 | 15 | 478 | 6.66e-59 | 201 |
| Msa0648250 | AT5G12420.1 | 28.788 | 462 | 298 | 8 | 9 | 447 | 7 | 460 | 2.63e-58 | 199 |
| Msa0648250 | AT3G49190.1 | 28.755 | 466 | 296 | 8 | 9 | 447 | 18 | 474 | 4.48e-58 | 200 |
| Msa0648250 | AT5G12420.2 | 29.426 | 418 | 265 | 7 | 9 | 403 | 7 | 417 | 1.93e-55 | 192 |
| Msa0648250 | AT5G16350.3 | 29.111 | 450 | 294 | 13 | 9 | 447 | 7 | 442 | 4.25e-53 | 185 |
| Msa0648250 | AT3G49210.1 | 27.968 | 497 | 317 | 10 | 9 | 468 | 26 | 518 | 3.29e-52 | 184 |
| Msa0648250 | AT3G49200.1 | 28.480 | 467 | 300 | 11 | 9 | 447 | 26 | 486 | 8.21e-52 | 183 |
| Msa0648250 | AT5G22490.1 | 29.247 | 465 | 284 | 15 | 10 | 447 | 12 | 458 | 9.18e-52 | 182 |
| Msa0648250 | AT1G72110.1 | 28.238 | 471 | 309 | 12 | 6 | 458 | 9 | 468 | 1.76e-51 | 181 |
| Msa0648250 | AT5G16350.1 | 27.623 | 467 | 299 | 12 | 9 | 447 | 7 | 462 | 6.69e-51 | 180 |
| Msa0648250 | AT2G38995.2 | 28.602 | 472 | 305 | 13 | 9 | 461 | 21 | 479 | 4.15e-49 | 175 |
| Msa0648250 | AT5G53380.1 | 26.432 | 454 | 300 | 8 | 9 | 439 | 9 | 451 | 3.13e-48 | 172 |
| Msa0648250 | AT5G37300.1 | 29.449 | 472 | 293 | 15 | 9 | 458 | 17 | 470 | 1.01e-47 | 171 |
| Msa0648250 | AT5G37300.4 | 29.449 | 472 | 293 | 15 | 9 | 458 | 35 | 488 | 1.39e-47 | 171 |
| Msa0648250 | AT1G72110.2 | 27.696 | 473 | 300 | 14 | 6 | 458 | 9 | 459 | 1.01e-46 | 168 |
| Msa0648250 | AT2G38995.3 | 28.947 | 418 | 263 | 14 | 64 | 461 | 7 | 410 | 2.48e-42 | 155 |
| Msa0648250 | AT5G16350.2 | 28.165 | 387 | 240 | 11 | 9 | 367 | 7 | 383 | 2.66e-42 | 155 |
| Msa0648250 | AT5G22490.2 | 29.870 | 385 | 227 | 14 | 10 | 367 | 12 | 380 | 1.07e-40 | 150 |
| Msa0648250 | AT3G49210.2 | 28.534 | 382 | 233 | 9 | 9 | 354 | 26 | 403 | 3.27e-40 | 150 |
| Msa0648250 | AT2G38995.4 | 29.600 | 375 | 232 | 13 | 64 | 420 | 7 | 367 | 3.22e-38 | 143 |
| Msa0648250 | AT5G37300.2 | 29.521 | 376 | 234 | 11 | 9 | 367 | 35 | 396 | 6.08e-36 | 137 |
| Msa0648250 | AT5G37300.3 | 31.461 | 267 | 169 | 8 | 9 | 269 | 35 | 293 | 1.21e-27 | 113 |
| Msa0648250 | AT2G38995.1 | 23.423 | 222 | 155 | 4 | 251 | 461 | 72 | 289 | 3.41e-13 | 70.5 |
| Msa0648250 | AT2G43255.1 | 25.397 | 189 | 129 | 5 | 283 | 466 | 33 | 214 | 2.23e-11 | 63.9 |
| Msa0648250 | AT2G43255.2 | 25.397 | 189 | 129 | 5 | 283 | 466 | 34 | 215 | 2.71e-11 | 63.5 |
Find 121 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTCCTTCACTGATTT+TGG | 0.094141 | 4_3:+54699250 | Msa0648250:CDS |
| GATTGATAGGTAAGAAATTT+TGG | 0.167979 | 4_3:-54698712 | None:intergenic |
| ATCTTTAATCATTGAGCTTT+TGG | 0.190332 | 4_3:-54699284 | None:intergenic |
| AATTGTCCACTTGGACTTAC+TGG | 0.240549 | 4_3:-54698602 | None:intergenic |
| TGCTTTCCAGACAAATTCTA+AGG | 0.254620 | 4_3:-54701437 | None:intergenic |
| TAAATAAGATTGAGTTAATA+AGG | 0.260439 | 4_3:-54702342 | None:intergenic |
| CACGGTGCATAGTACTAAAA+TGG | 0.269930 | 4_3:+54698556 | Msa0648250:exon |
| GGCTGGCTTGGCACAACTTT+GGG | 0.276206 | 4_3:-54701405 | None:intergenic |
| TATTTAATCTTTGTTCTTGT+TGG | 0.288350 | 4_3:-54702025 | None:intergenic |
| TATTGAATGGCTCTTAGATA+TGG | 0.311951 | 4_3:+54701504 | Msa0648250:CDS |
| AATCAGCCTTTGTCATATCT+TGG | 0.336966 | 4_3:-54701336 | None:intergenic |
| TTCCACTGGCCCAATCAAAT+TGG | 0.339045 | 4_3:-54701691 | None:intergenic |
| AAGATGACAAAACACCTATA+TGG | 0.354141 | 4_3:+54699302 | Msa0648250:CDS |
| TTGTCATATCTTGGATTGAT+TGG | 0.356004 | 4_3:-54701327 | None:intergenic |
| CATGCAAGAGATTGACAATA+AGG | 0.360961 | 4_3:+54701246 | Msa0648250:CDS |
| ACACATATAAAGTACCATTA+TGG | 0.364656 | 4_3:-54698747 | None:intergenic |
| TTGGTAACTTCCAATGTTCC+TGG | 0.365297 | 4_3:-54701308 | None:intergenic |
| GGCTGATTCAAAATCTCCTT+GGG | 0.370234 | 4_3:+54701351 | Msa0648250:CDS |
| GCTAACAAACTACGGTTACT+TGG | 0.370658 | 4_3:+54702282 | Msa0648250:three_prime_UTR |
| TTTCATCAAGAGAGAATGAT+AGG | 0.372720 | 4_3:-54699369 | None:intergenic |
| GTTCCTTCAGCATTGCTTGT+TGG | 0.387997 | 4_3:-54699043 | None:intergenic |
| AGGCTGGCTTGGCACAACTT+TGG | 0.391874 | 4_3:-54701406 | None:intergenic |
| CTAACCCCTTAGAATTTGTC+TGG | 0.400986 | 4_3:+54701431 | Msa0648250:CDS |
| GCCAGTGGAACCTATGGCTT+TGG | 0.408139 | 4_3:+54701704 | Msa0648250:CDS |
| GCAGTTGCTAAACATATCTA+TGG | 0.414646 | 4_3:+54701639 | Msa0648250:CDS |
| ACCACAAGACAAACCACTTT+GGG | 0.414710 | 4_3:+54699000 | Msa0648250:CDS |
| TCCACGCTTCTCCTCCATAA+TGG | 0.415488 | 4_3:+54698733 | Msa0648250:CDS |
| GCTTGGCACAACTTTGGGAT+TGG | 0.421008 | 4_3:-54701400 | None:intergenic |
| TTCTAAGGGGTTAGATAGGC+TGG | 0.423278 | 4_3:-54701422 | None:intergenic |
| AGGCTGATTCAAAATCTCCT+TGG | 0.423311 | 4_3:+54701350 | Msa0648250:CDS |
| GAGGAGAAGCGTGGATTGAT+AGG | 0.424660 | 4_3:-54698725 | None:intergenic |
| GTTGTCATATCCAATTTGAT+TGG | 0.424756 | 4_3:+54701681 | Msa0648250:CDS |
| GTATATGTAAGAAAGAAATA+TGG | 0.427920 | 4_3:-54701378 | None:intergenic |
| GGAAATCTCCATTACTGCCT+TGG | 0.431427 | 4_3:-54702004 | None:intergenic |
| TTGATCACATGGTTTCTTGT+TGG | 0.431534 | 4_3:-54702305 | None:intergenic |
| GGAATATTGGAACCTTCATA+TGG | 0.433653 | 4_3:-54698904 | None:intergenic |
| CAAATTCTAAGGGGTTAGAT+AGG | 0.434322 | 4_3:-54701426 | None:intergenic |
| TTGTCATATCCAATTTGATT+GGG | 0.434336 | 4_3:+54701682 | Msa0648250:CDS |
| ATCAGTGAAGGAATTGAAAA+GGG | 0.435338 | 4_3:-54699245 | None:intergenic |
| CCTTCCTCACCATTCCATAT+AGG | 0.442303 | 4_3:-54699316 | None:intergenic |
| GTGCATAGTAAGAGCCTTTG+AGG | 0.443190 | 4_3:+54701975 | Msa0648250:CDS |
| AATCAGTGAAGGAATTGAAA+AGG | 0.445410 | 4_3:-54699246 | None:intergenic |
| TGGTGATGGTTACTCTCTCA+TGG | 0.446072 | 4_3:+54699093 | Msa0648250:CDS |
| GCAAGAACATCAAATTCAAC+AGG | 0.450264 | 4_3:+54701268 | Msa0648250:CDS |
| GGCTTGTACTTTACAATGAC+AGG | 0.453421 | 4_3:+54701744 | Msa0648250:CDS |
| TCCGAAAACATATGAACATA+GGG | 0.457117 | 4_3:-54698639 | None:intergenic |
| GATTGGGCCAGTGGAACCTA+TGG | 0.464336 | 4_3:+54701698 | Msa0648250:CDS |
| CACCACAAGACAAACCACTT+TGG | 0.467869 | 4_3:+54698999 | Msa0648250:CDS |
| GATATGGAGCTGAAATTAAG+AGG | 0.473758 | 4_3:+54701520 | Msa0648250:CDS |
| TAATCCGCGCTATATATAGA+AGG | 0.475627 | 4_3:-54702258 | None:intergenic |
| AACATCAAATTCAACAGGAT+TGG | 0.477689 | 4_3:+54701273 | Msa0648250:CDS |
| CTTTCAGTGTGAGTTTGAAG+AGG | 0.481509 | 4_3:+54702082 | Msa0648250:three_prime_UTR |
| ACAATAAATGATGTGATCAC+TGG | 0.488070 | 4_3:+54701196 | Msa0648250:CDS |
| TTGTCAAGTTTAGTTTCTGT+TGG | 0.490811 | 4_3:+54702115 | Msa0648250:three_prime_UTR |
| ATTAAATGCATTTCCCAAAG+TGG | 0.491593 | 4_3:-54699013 | None:intergenic |
| CAATTGTTATCTCCCAAGAA+AGG | 0.493013 | 4_3:+54699190 | Msa0648250:CDS |
| CAATAAATGATGTGATCACT+GGG | 0.495823 | 4_3:+54701197 | Msa0648250:CDS |
| GGAAAAGACAAAGGAAGAGA+AGG | 0.498632 | 4_3:-54699151 | None:intergenic |
| AAAACGATCAAGTCTAAGCT+TGG | 0.498977 | 4_3:+54699394 | Msa0648250:CDS |
| TCCCAAAGTGGTTTGTCTTG+TGG | 0.504133 | 4_3:-54699001 | None:intergenic |
| TTCAAACTTCACCATGCACT+TGG | 0.505787 | 4_3:+54699073 | Msa0648250:CDS |
| GCCAAAGCCATAGGTTCCAC+TGG | 0.507030 | 4_3:-54701705 | None:intergenic |
| ATCCAATTTGATTGGGCCAG+TGG | 0.512219 | 4_3:+54701689 | Msa0648250:CDS |
| GGATGGTTTGCCAAAGCCAT+AGG | 0.516215 | 4_3:-54701714 | None:intergenic |
| ATCCGAAAACATATGAACAT+AGG | 0.525975 | 4_3:-54698640 | None:intergenic |
| GTAAAGTACAAGCCTTTCAC+AGG | 0.526010 | 4_3:-54701735 | None:intergenic |
| ATAGTTTGAGAGTCGTCCAT+TGG | 0.527468 | 4_3:-54698680 | None:intergenic |
| AGGGGTTAGATAGGCTGGCT+TGG | 0.528713 | 4_3:-54701417 | None:intergenic |
| TTGGCAAACCATCCTGTGAA+AGG | 0.530246 | 4_3:+54701723 | Msa0648250:CDS |
| GGTCATATCCAAGGCAGTAA+TGG | 0.532557 | 4_3:+54701996 | Msa0648250:CDS |
| TATAAAGAAGCAGAAGGGCA+TGG | 0.532952 | 4_3:+54702055 | Msa0648250:three_prime_UTR |
| TTGGGAGATAACAATTGTGA+TGG | 0.542990 | 4_3:-54699184 | None:intergenic |
| GAAAAGACAAAGGAAGAGAA+GGG | 0.543491 | 4_3:-54699150 | None:intergenic |
| CTTCACCATGCACTTGGTGA+TGG | 0.544042 | 4_3:+54699079 | Msa0648250:CDS |
| ACTATCTATAAAGAAGCAGA+AGG | 0.555060 | 4_3:+54702049 | Msa0648250:three_prime_UTR |
| TTGCTTAGTACCAGGAACAT+TGG | 0.555485 | 4_3:+54701298 | Msa0648250:CDS |
| AGTACAAGCCTTTCACAGGA+TGG | 0.556400 | 4_3:-54701731 | None:intergenic |
| GGTGATGGTTACTCTCTCAT+GGG | 0.557425 | 4_3:+54699094 | Msa0648250:CDS |
| ATAAAGAAGCAGAAGGGCAT+GGG | 0.563560 | 4_3:+54702056 | Msa0648250:three_prime_UTR |
| GCTTTCCAGACAAATTCTAA+GGG | 0.564784 | 4_3:-54701436 | None:intergenic |
| TTATGTGTCAAAGATTATGA+TGG | 0.567297 | 4_3:+54698970 | Msa0648250:CDS |
| TTTGGAATTAGAAATTCCAA+TGG | 0.569395 | 4_3:+54698664 | Msa0648250:CDS |
| ACCAAGATGGCAAAATGAAG+TGG | 0.575574 | 4_3:+54698855 | Msa0648250:CDS |
| GACAAAACACCTATATGGAA+TGG | 0.575761 | 4_3:+54699307 | Msa0648250:CDS |
| GATTGGTGTTGCTTAGTACC+AGG | 0.580882 | 4_3:+54701290 | Msa0648250:CDS |
| TGGCTCTGTCACATCTTCAA+AGG | 0.583413 | 4_3:-54698582 | None:intergenic |
| CCTATATGGAATGGTGAGGA+AGG | 0.587168 | 4_3:+54699316 | Msa0648250:CDS |
| AATTGTGATGGTTTGCGTGA+AGG | 0.589854 | 4_3:-54699172 | None:intergenic |
| TCAGTGAAGGAATTGAAAAG+GGG | 0.592189 | 4_3:-54699244 | None:intergenic |
| CGGATTATGCTAACAAACTA+CGG | 0.596757 | 4_3:+54702274 | Msa0648250:three_prime_UTR |
| TGCCTTGGATATGACCTCAA+AGG | 0.599981 | 4_3:-54701989 | None:intergenic |
| CAGTGAAGGAATTGAAAAGG+GGG | 0.603771 | 4_3:-54699243 | None:intergenic |
| AGTAACCATCACCAAGTGCA+TGG | 0.610345 | 4_3:-54699084 | None:intergenic |
| AAGCACAAAATATAATCAAG+AGG | 0.610368 | 4_3:+54701455 | Msa0648250:CDS |
| ACCATTATGGAGGAGAAGCG+TGG | 0.611896 | 4_3:-54698734 | None:intergenic |
| GCAGCTTGAAGACCATATGA+AGG | 0.612976 | 4_3:+54698892 | Msa0648250:CDS |
| GCTCCATCCAAAATCAGTGA+AGG | 0.613358 | 4_3:-54699257 | None:intergenic |
| TATCCAACAAGCAATGCTGA+AGG | 0.616041 | 4_3:+54699040 | Msa0648250:CDS |
| AGCCTTTGAGGTCATATCCA+AGG | 0.617831 | 4_3:+54701987 | Msa0648250:CDS |
| TTAACCTTCTATATATAGCG+CGG | 0.622682 | 4_3:+54702254 | Msa0648250:three_prime_UTR |
| TTAGAAATAACTTGATCACA+TGG | 0.628372 | 4_3:-54702316 | None:intergenic |
| ACAGAGCCAGTAAGTCCAAG+TGG | 0.634141 | 4_3:+54698596 | Msa0648250:CDS |
| CTTTCCAGACAAATTCTAAG+GGG | 0.636642 | 4_3:-54701435 | None:intergenic |
| ATCAATCCAAGATATGACAA+AGG | 0.639015 | 4_3:+54701330 | Msa0648250:CDS |
| GCTGAAATTAAGAGGACATG+AGG | 0.640508 | 4_3:+54701528 | Msa0648250:CDS |
| TACAATGACAGGTGGACCTG+AGG | 0.642479 | 4_3:+54701755 | Msa0648250:CDS |
| TTAGTCTCTACTTTCTAACA+CGG | 0.646121 | 4_3:+54698538 | Msa0648250:five_prime_UTR |
| CATATAAAGTACCATTATGG+AGG | 0.648669 | 4_3:-54698744 | None:intergenic |
| CTATCTATAAAGAAGCAGAA+GGG | 0.651751 | 4_3:+54702050 | Msa0648250:three_prime_UTR |
| CTGATTCAAAATCTCCTTGG+GGG | 0.654193 | 4_3:+54701353 | Msa0648250:CDS |
| GTATTGAAGAATTGTCCACT+TGG | 0.655797 | 4_3:-54698611 | None:intergenic |
| GCTGATTCAAAATCTCCTTG+GGG | 0.657580 | 4_3:+54701352 | Msa0648250:CDS |
| GATCAAGTCTAAGCTTGGAG+TGG | 0.658375 | 4_3:+54699399 | Msa0648250:CDS |
| GATAGGTTTGATAGTACACA+AGG | 0.661721 | 4_3:-54699352 | None:intergenic |
| AACACCTATATGGAATGGTG+AGG | 0.661811 | 4_3:+54699312 | Msa0648250:CDS |
| TTGTACTTTACAATGACAGG+TGG | 0.673805 | 4_3:+54701747 | Msa0648250:CDS |
| TTGCGTGAAGGAAAAGACAA+AGG | 0.685949 | 4_3:-54699160 | None:intergenic |
| CCGAAAACATATGAACATAG+GGG | 0.692361 | 4_3:-54698638 | None:intergenic |
| ATATAGGTGAGAGACCAAGA+TGG | 0.699636 | 4_3:+54698842 | Msa0648250:intron |
| AAAACATATGAACATAGGGG+TGG | 0.715907 | 4_3:-54698635 | None:intergenic |
| AATAAATGATGTGATCACTG+GGG | 0.785544 | 4_3:+54701198 | Msa0648250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTTTAAAAAATAA+AGG | + | chr4_3:54699756-54699775 | Msa0648250:intron | 0.0% |
| !!! | TTAAAATTTTAAAAAATAAA+GGG | + | chr4_3:54699757-54699776 | Msa0648250:intron | 0.0% |
| !!! | TTAAAAATTTTAATTTTTTT+AGG | + | chr4_3:54700362-54700381 | Msa0648250:intron | 0.0% |
| !!! | ATATTTTTTTGAAAATTTTG+GGG | + | chr4_3:54699788-54699807 | Msa0648250:intron | 10.0% |
| !! | TTTGTAATTTAAAAAGAATT+AGG | + | chr4_3:54699817-54699836 | Msa0648250:intron | 10.0% |
| !! | TTGTAATTTAAAAAGAATTA+GGG | + | chr4_3:54699818-54699837 | Msa0648250:intron | 10.0% |
| !!! | AATTTTTTAAAACTGTAAAT+TGG | - | chr4_3:54699845-54699864 | None:intergenic | 10.0% |
| !!! | TTACAGTTTTAAAAAATTAT+AGG | + | chr4_3:54699847-54699866 | Msa0648250:intron | 10.0% |
| !!! | TACAGTTTTAAAAAATTATA+GGG | + | chr4_3:54699848-54699867 | Msa0648250:intron | 10.0% |
| !! | AAATTTGAAAATTGAAATTA+GGG | + | chr4_3:54700387-54700406 | Msa0648250:intron | 10.0% |
| !!! | AATTTTTTGGAAATTTATTA+GGG | + | chr4_3:54700691-54700710 | Msa0648250:intron | 10.0% |
| !!! | AATTTTCAAATTTTACATTT+AGG | - | chr4_3:54700746-54700765 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTAGAGAATTTT+AGG | + | chr4_3:54699614-54699633 | Msa0648250:intron | 15.0% |
| !! | TGTAATTTAAAAAGAATTAG+GGG | + | chr4_3:54699819-54699838 | Msa0648250:intron | 15.0% |
| !!! | ACAGTTTTAAAAAATTATAG+GGG | + | chr4_3:54699849-54699868 | Msa0648250:intron | 15.0% |
| !! | GAAATTCTCTAAATTTAATT+TGG | + | chr4_3:54699972-54699991 | Msa0648250:intron | 15.0% |
| !! | ACAAAAATATTTAGAAATGA+AGG | - | chr4_3:54700294-54700313 | None:intergenic | 15.0% |
| !!! | CTAATTTCAATTTTCAAATT+TGG | - | chr4_3:54700388-54700407 | None:intergenic | 15.0% |
| !! | CAAATTTGAAAATTGAAATT+AGG | + | chr4_3:54700386-54700405 | Msa0648250:intron | 15.0% |
| !! | AATTTGAAAATTGAAATTAG+GGG | + | chr4_3:54700388-54700407 | Msa0648250:intron | 15.0% |
| !! | AAATTTCAAAAAATGTTGAT+GGG | + | chr4_3:54700420-54700439 | Msa0648250:intron | 15.0% |
| !!! | AATTTTAATGACAACTTTTT+GGG | - | chr4_3:54700593-54700612 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTTCCAAAAAAT+AGG | + | chr4_3:54700657-54700676 | Msa0648250:intron | 15.0% |
| !!! | TTTTCAATTTCCAAAAAATA+GGG | + | chr4_3:54700658-54700677 | Msa0648250:intron | 15.0% |
| !!! | CAATTTTTTGGAAATTTATT+AGG | + | chr4_3:54700690-54700709 | Msa0648250:intron | 15.0% |
| !! | CAAATATGAATTTAATTGTT+TGG | - | chr4_3:54700872-54700891 | None:intergenic | 15.0% |
| !!! | AGTTTTGTAGTATAATATTT+CGG | - | chr4_3:54700963-54700982 | None:intergenic | 15.0% |
| !! | TATGAATTTGGTTATAATTA+AGG | - | chr4_3:54701070-54701089 | None:intergenic | 15.0% |
| !! | CAAGTGAAAAATTATAATTA+AGG | - | chr4_3:54701108-54701127 | None:intergenic | 15.0% |
| !!! | TAATTATAATTTTTCACTTG+TGG | + | chr4_3:54701108-54701127 | Msa0648250:intron | 15.0% |
| !! | TAAATAAGATTGAGTTAATA+AGG | - | chr4_3:54702345-54702364 | None:intergenic | 15.0% |
| !! | TATATGCTACATGTTTATAT+AGG | + | chr4_3:54698826-54698845 | Msa0648250:intron | 20.0% |
| !!! | ATTCAATTGATTCACTTTTA+GGG | - | chr4_3:54698928-54698947 | None:intergenic | 20.0% |
| !!! | AATTCAATTGATTCACTTTT+AGG | - | chr4_3:54698929-54698948 | None:intergenic | 20.0% |
| !! | ATATATAAATTTGCGATAGA+GGG | - | chr4_3:54699433-54699452 | None:intergenic | 20.0% |
| !! | AAAAAATCAAATACACTCTT+AGG | - | chr4_3:54699602-54699621 | None:intergenic | 20.0% |
| !!! | AAATTCCATTGTTAACATTT+TGG | + | chr4_3:54699700-54699719 | Msa0648250:intron | 20.0% |
| !!! | TTTGAACATTTTGAAAAGTA+CGG | + | chr4_3:54699876-54699895 | Msa0648250:intron | 20.0% |
| !!! | TTACTTTTTCAAATTTTGCA+AGG | - | chr4_3:54699908-54699927 | None:intergenic | 20.0% |
| !! | AATTTGAAAAAGTAACAAGA+AGG | + | chr4_3:54699913-54699932 | Msa0648250:intron | 20.0% |
| !! | ATTTGAAAAAGTAACAAGAA+GGG | + | chr4_3:54699914-54699933 | Msa0648250:intron | 20.0% |
| !! | TTTAGATCAATTTCAGTATT+TGG | - | chr4_3:54700049-54700068 | None:intergenic | 20.0% |
| !! | AATACTGAAATTGATCTAAA+AGG | + | chr4_3:54700049-54700068 | Msa0648250:intron | 20.0% |
| !!! | TTTGAAGAATTTAGAATTCT+AGG | + | chr4_3:54700218-54700237 | Msa0648250:intron | 20.0% |
| !!! | TCTAAATATTTTTGTTTGCA+TGG | + | chr4_3:54700299-54700318 | Msa0648250:intron | 20.0% |
| !! | CAAATTTCAAAAAATGTTGA+TGG | + | chr4_3:54700419-54700438 | Msa0648250:intron | 20.0% |
| !!! | CAATTTTAATGACAACTTTT+TGG | - | chr4_3:54700594-54700613 | None:intergenic | 20.0% |
| !! | TTTCAATTTCCAAAAAATAG+GGG | + | chr4_3:54700659-54700678 | Msa0648250:intron | 20.0% |
| !!! | TTGAAAATTTTGGAAATGTA+AGG | + | chr4_3:54700719-54700738 | Msa0648250:intron | 20.0% |
| !!! | CCAAATTCATACATTTTATT+CGG | + | chr4_3:54701079-54701098 | Msa0648250:intron | 20.0% |
| !! | GTATATGTAAGAAAGAAATA+TGG | - | chr4_3:54701381-54701400 | None:intergenic | 20.0% |
| !! | GAAAAATAAACAAAAGACTT+GGG | - | chr4_3:54701576-54701595 | None:intergenic | 20.0% |
| !! | TGAAAAATAAACAAAAGACT+TGG | - | chr4_3:54701577-54701596 | None:intergenic | 20.0% |
| !! | TATTTAATCTTTGTTCTTGT+TGG | - | chr4_3:54702028-54702047 | None:intergenic | 20.0% |
| !! | TTCATATGTTTTCGGATTTT+TGG | + | chr4_3:54698646-54698665 | Msa0648250:CDS | 25.0% |
| !! | TTTGGAATTAGAAATTCCAA+TGG | + | chr4_3:54698664-54698683 | Msa0648250:CDS | 25.0% |
| !! | GATTGATAGGTAAGAAATTT+TGG | - | chr4_3:54698715-54698734 | None:intergenic | 25.0% |
| !! | ACACATATAAAGTACCATTA+TGG | - | chr4_3:54698750-54698769 | None:intergenic | 25.0% |
| ! | TTATGTGTCAAAGATTATGA+TGG | + | chr4_3:54698970-54698989 | Msa0648250:CDS | 25.0% |
| !! | ATCTTTAATCATTGAGCTTT+TGG | - | chr4_3:54699287-54699306 | None:intergenic | 25.0% |
| ! | CATATATAAATTTGCGATAG+AGG | - | chr4_3:54699434-54699453 | None:intergenic | 25.0% |
| !!! | GAGAGAGATATTGTTTTTTT+AGG | + | chr4_3:54699522-54699541 | Msa0648250:intron | 25.0% |
| !!! | AGAGATATTGTTTTTTTAGG+AGG | + | chr4_3:54699525-54699544 | Msa0648250:intron | 25.0% |
| !!! | ATATTGTTTTTTTAGGAGGT+GGG | + | chr4_3:54699529-54699548 | Msa0648250:intron | 25.0% |
| ! | AAGACTAGACATATTCTAAT+AGG | - | chr4_3:54699569-54699588 | None:intergenic | 25.0% |
| !!! | TTGAACATTTTGAAAAGTAC+GGG | + | chr4_3:54699877-54699896 | Msa0648250:intron | 25.0% |
| !!! | ATTTGGAATTCCTAACTTTT+AGG | + | chr4_3:54699941-54699960 | Msa0648250:intron | 25.0% |
| !! | AACTTCATTCTCATCATTTT+TGG | + | chr4_3:54700332-54700351 | Msa0648250:intron | 25.0% |
| !!! | AACTCTTTTTGAAAAGTTGA+GGG | + | chr4_3:54700629-54700648 | Msa0648250:intron | 25.0% |
| !! | TAGGGTCAATTTGAAAATTT+TGG | + | chr4_3:54700709-54700728 | Msa0648250:intron | 25.0% |
| ! | CCGAATAAAATGTATGAATT+TGG | - | chr4_3:54701082-54701101 | None:intergenic | 25.0% |
| ! | AAGCACAAAATATAATCAAG+AGG | + | chr4_3:54701455-54701474 | Msa0648250:CDS | 25.0% |
| !!! | TCACTGTTTTTCTTATTGAA+TGG | + | chr4_3:54701491-54701510 | Msa0648250:CDS | 25.0% |
| ! | TTGTCATATCCAATTTGATT+GGG | + | chr4_3:54701682-54701701 | Msa0648250:CDS | 25.0% |
| !!! | GTGACACATTTTTTTTTAAG+AGG | - | chr4_3:54701835-54701854 | None:intergenic | 25.0% |
| ! | TTAGAAATAACTTGATCACA+TGG | - | chr4_3:54702319-54702338 | None:intergenic | 25.0% |
| TTAGTCTCTACTTTCTAACA+CGG | + | chr4_3:54698538-54698557 | Msa0648250:five_prime_UTR | 30.0% | |
| TCCGAAAACATATGAACATA+GGG | - | chr4_3:54698642-54698661 | None:intergenic | 30.0% | |
| ATCCGAAAACATATGAACAT+AGG | - | chr4_3:54698643-54698662 | None:intergenic | 30.0% | |
| ! | CATATAAAGTACCATTATGG+AGG | - | chr4_3:54698747-54698766 | None:intergenic | 30.0% |
| AATGAAGTGGAAAAAAGTAG+AGG | + | chr4_3:54698868-54698887 | Msa0648250:CDS | 30.0% | |
| !! | GATTCACTTTTAGGGAATAT+TGG | - | chr4_3:54698920-54698939 | None:intergenic | 30.0% |
| ATTAAATGCATTTCCCAAAG+TGG | - | chr4_3:54699016-54699035 | None:intergenic | 30.0% | |
| CACTTGAAAAAACCTTTCTT+GGG | - | chr4_3:54699205-54699224 | None:intergenic | 30.0% | |
| ATCAGTGAAGGAATTGAAAA+GGG | - | chr4_3:54699248-54699267 | None:intergenic | 30.0% | |
| AATCAGTGAAGGAATTGAAA+AGG | - | chr4_3:54699249-54699268 | None:intergenic | 30.0% | |
| !!! | TTCAATTCCTTCACTGATTT+TGG | + | chr4_3:54699250-54699269 | Msa0648250:CDS | 30.0% |
| AAGATGACAAAACACCTATA+TGG | + | chr4_3:54699302-54699321 | Msa0648250:CDS | 30.0% | |
| TTTCATCAAGAGAGAATGAT+AGG | - | chr4_3:54699372-54699391 | None:intergenic | 30.0% | |
| !!! | GATATTGTTTTTTTAGGAGG+TGG | + | chr4_3:54699528-54699547 | Msa0648250:intron | 30.0% |
| !!! | TATTGTTTTTTTAGGAGGTG+GGG | + | chr4_3:54699530-54699549 | Msa0648250:intron | 30.0% |
| !! | TTAGAATATGTCTAGTCTTG+CGG | + | chr4_3:54699570-54699589 | Msa0648250:intron | 30.0% |
| AGTAGCCAAAATGTTAACAA+TGG | - | chr4_3:54699708-54699727 | None:intergenic | 30.0% | |
| !! | TGAACATTTTGAAAAGTACG+GGG | + | chr4_3:54699878-54699897 | Msa0648250:intron | 30.0% |
| TCAAATGACACCTAAAAGTT+AGG | - | chr4_3:54699954-54699973 | None:intergenic | 30.0% | |
| ! | GAGGTAATGTAATTTTTGCA+GGG | - | chr4_3:54700084-54700103 | None:intergenic | 30.0% |
| ! | TGAGGTAATGTAATTTTTGC+AGG | - | chr4_3:54700085-54700104 | None:intergenic | 30.0% |
| ! | TTGGATGAAAGAATGTTTTG+AGG | - | chr4_3:54700103-54700122 | None:intergenic | 30.0% |
| GAAATTTCTTAGAGTGTGTT+TGG | - | chr4_3:54700122-54700141 | None:intergenic | 30.0% | |
| ! | ACACACTCTAAGAAATTTCA+AGG | + | chr4_3:54700123-54700142 | Msa0648250:intron | 30.0% |
| ATGAATTTGTAGAGAAAAGG+AGG | - | chr4_3:54700564-54700583 | None:intergenic | 30.0% | |
| ! | TCCTTTTCTCTACAAATTCA+TGG | + | chr4_3:54700563-54700582 | Msa0648250:intron | 30.0% |
| ACCATGAATTTGTAGAGAAA+AGG | - | chr4_3:54700567-54700586 | None:intergenic | 30.0% | |
| !! | CAACTCTTTTTGAAAAGTTG+AGG | + | chr4_3:54700628-54700647 | Msa0648250:intron | 30.0% |
| !! | ACTCTTTTTGAAAAGTTGAG+GGG | + | chr4_3:54700630-54700649 | Msa0648250:intron | 30.0% |
| AACTCTCTCTCTAAATCTTA+TGG | + | chr4_3:54700979-54700998 | Msa0648250:intron | 30.0% | |
| ACAATAAATGATGTGATCAC+TGG | + | chr4_3:54701196-54701215 | Msa0648250:CDS | 30.0% | |
| CAATAAATGATGTGATCACT+GGG | + | chr4_3:54701197-54701216 | Msa0648250:CDS | 30.0% | |
| AATAAATGATGTGATCACTG+GGG | + | chr4_3:54701198-54701217 | Msa0648250:CDS | 30.0% | |
| AACATCAAATTCAACAGGAT+TGG | + | chr4_3:54701273-54701292 | Msa0648250:CDS | 30.0% | |
| TTGTCATATCTTGGATTGAT+TGG | - | chr4_3:54701330-54701349 | None:intergenic | 30.0% | |
| ATCAATCCAAGATATGACAA+AGG | + | chr4_3:54701330-54701349 | Msa0648250:CDS | 30.0% | |
| TATTGAATGGCTCTTAGATA+TGG | + | chr4_3:54701504-54701523 | Msa0648250:CDS | 30.0% | |
| TTGCTATAAACATGTGTTGT+AGG | + | chr4_3:54701617-54701636 | Msa0648250:intron | 30.0% | |
| GTTGTCATATCCAATTTGAT+TGG | + | chr4_3:54701681-54701700 | Msa0648250:CDS | 30.0% | |
| TGTTATAGTAACATGAGAGA+AGG | - | chr4_3:54701811-54701830 | None:intergenic | 30.0% | |
| CTATAACATGTTATCCTTTG+TGG | + | chr4_3:54701854-54701873 | Msa0648250:intron | 30.0% | |
| ACTATCTATAAAGAAGCAGA+AGG | + | chr4_3:54702049-54702068 | Msa0648250:three_prime_UTR | 30.0% | |
| CTATCTATAAAGAAGCAGAA+GGG | + | chr4_3:54702050-54702069 | Msa0648250:three_prime_UTR | 30.0% | |
| ! | TTGTCAAGTTTAGTTTCTGT+TGG | + | chr4_3:54702115-54702134 | Msa0648250:three_prime_UTR | 30.0% |
| TTAACCTTCTATATATAGCG+CGG | + | chr4_3:54702254-54702273 | Msa0648250:three_prime_UTR | 30.0% | |
| GTATTGAAGAATTGTCCACT+TGG | - | chr4_3:54698614-54698633 | None:intergenic | 35.0% | |
| AAAACATATGAACATAGGGG+TGG | - | chr4_3:54698638-54698657 | None:intergenic | 35.0% | |
| CCGAAAACATATGAACATAG+GGG | - | chr4_3:54698641-54698660 | None:intergenic | 35.0% | |
| ! | CCCCTATGTTCATATGTTTT+CGG | + | chr4_3:54698638-54698657 | Msa0648250:CDS | 35.0% |
| GGAATATTGGAACCTTCATA+TGG | - | chr4_3:54698907-54698926 | None:intergenic | 35.0% | |
| GAAAAGACAAAGGAAGAGAA+GGG | - | chr4_3:54699153-54699172 | None:intergenic | 35.0% | |
| TTGGGAGATAACAATTGTGA+TGG | - | chr4_3:54699187-54699206 | None:intergenic | 35.0% | |
| CAATTGTTATCTCCCAAGAA+AGG | + | chr4_3:54699190-54699209 | Msa0648250:CDS | 35.0% | |
| CCACTTGAAAAAACCTTTCT+TGG | - | chr4_3:54699206-54699225 | None:intergenic | 35.0% | |
| !!! | CCAAGAAAGGTTTTTTCAAG+TGG | + | chr4_3:54699203-54699222 | Msa0648250:CDS | 35.0% |
| TCAGTGAAGGAATTGAAAAG+GGG | - | chr4_3:54699247-54699266 | None:intergenic | 35.0% | |
| !!! | ATTCCTTCACTGATTTTGGA+TGG | + | chr4_3:54699254-54699273 | Msa0648250:CDS | 35.0% |
| GACAAAACACCTATATGGAA+TGG | + | chr4_3:54699307-54699326 | Msa0648250:CDS | 35.0% | |
| ! | GATAGGTTTGATAGTACACA+AGG | - | chr4_3:54699355-54699374 | None:intergenic | 35.0% |
| AAAACGATCAAGTCTAAGCT+TGG | + | chr4_3:54699394-54699413 | Msa0648250:CDS | 35.0% | |
| CATTTCTAAATGTCTTCGCT+TGG | + | chr4_3:54699666-54699685 | Msa0648250:intron | 35.0% | |
| GTAACAAGAAGGGAGAAATT+TGG | + | chr4_3:54699924-54699943 | Msa0648250:intron | 35.0% | |
| ! | GTATTGACAGAAAAGAGAGA+AGG | - | chr4_3:54700542-54700561 | None:intergenic | 35.0% |
| !!! | TTGGATAGGAGAGTGTTTTA+AGG | - | chr4_3:54700918-54700937 | None:intergenic | 35.0% |
| TATCAAACCGTTAGTGTGTT+TGG | - | chr4_3:54700937-54700956 | None:intergenic | 35.0% | |
| TCCAAGTTCATACATATTGC+TGG | + | chr4_3:54701040-54701059 | Msa0648250:intron | 35.0% | |
| CCAAGTTCATACATATTGCT+GGG | + | chr4_3:54701041-54701060 | Msa0648250:intron | 35.0% | |
| ! | ATCACTGGGGTAATTTTCTA+TGG | + | chr4_3:54701211-54701230 | Msa0648250:CDS | 35.0% |
| ! | TCACTGGGGTAATTTTCTAT+GGG | + | chr4_3:54701212-54701231 | Msa0648250:CDS | 35.0% |
| ! | GGGTAATTTTCTATGGGATT+AGG | + | chr4_3:54701218-54701237 | Msa0648250:CDS | 35.0% |
| CATGCAAGAGATTGACAATA+AGG | + | chr4_3:54701246-54701265 | Msa0648250:CDS | 35.0% | |
| GCAAGAACATCAAATTCAAC+AGG | + | chr4_3:54701268-54701287 | Msa0648250:CDS | 35.0% | |
| AATCAGCCTTTGTCATATCT+TGG | - | chr4_3:54701339-54701358 | None:intergenic | 35.0% | |
| ! | CAAATTCTAAGGGGTTAGAT+AGG | - | chr4_3:54701429-54701448 | None:intergenic | 35.0% |
| CTTTCCAGACAAATTCTAAG+GGG | - | chr4_3:54701438-54701457 | None:intergenic | 35.0% | |
| GCTTTCCAGACAAATTCTAA+GGG | - | chr4_3:54701439-54701458 | None:intergenic | 35.0% | |
| TGCTTTCCAGACAAATTCTA+AGG | - | chr4_3:54701440-54701459 | None:intergenic | 35.0% | |
| GATATGGAGCTGAAATTAAG+AGG | + | chr4_3:54701520-54701539 | Msa0648250:CDS | 35.0% | |
| AAATTAAGAGGACATGAGGT+GGG | + | chr4_3:54701532-54701551 | Msa0648250:intron | 35.0% | |
| GCAGTTGCTAAACATATCTA+TGG | + | chr4_3:54701639-54701658 | Msa0648250:CDS | 35.0% | |
| TTGTACTTTACAATGACAGG+TGG | + | chr4_3:54701747-54701766 | Msa0648250:CDS | 35.0% | |
| CAACTTGAGAGTTAAGATGA+TGG | - | chr4_3:54701784-54701803 | None:intergenic | 35.0% | |
| CATCATCTTAACTCTCAAGT+TGG | + | chr4_3:54701782-54701801 | Msa0648250:intron | 35.0% | |
| TTTATACTCTGCAACCACAA+AGG | - | chr4_3:54701871-54701890 | None:intergenic | 35.0% | |
| TAATCCGCGCTATATATAGA+AGG | - | chr4_3:54702261-54702280 | None:intergenic | 35.0% | |
| CGGATTATGCTAACAAACTA+CGG | + | chr4_3:54702274-54702293 | Msa0648250:three_prime_UTR | 35.0% | |
| TTGATCACATGGTTTCTTGT+TGG | - | chr4_3:54702308-54702327 | None:intergenic | 35.0% | |
| CACGGTGCATAGTACTAAAA+TGG | + | chr4_3:54698556-54698575 | Msa0648250:exon | 40.0% | |
| AATTGTCCACTTGGACTTAC+TGG | - | chr4_3:54698605-54698624 | None:intergenic | 40.0% | |
| ATAGTTTGAGAGTCGTCCAT+TGG | - | chr4_3:54698683-54698702 | None:intergenic | 40.0% | |
| ATATAGGTGAGAGACCAAGA+TGG | + | chr4_3:54698842-54698861 | Msa0648250:intron | 40.0% | |
| ACCAAGATGGCAAAATGAAG+TGG | + | chr4_3:54698855-54698874 | Msa0648250:CDS | 40.0% | |
| ! | TCCACTTCATTTTGCCATCT+TGG | - | chr4_3:54698859-54698878 | None:intergenic | 40.0% |
| ACCACAAGACAAACCACTTT+GGG | + | chr4_3:54699000-54699019 | Msa0648250:CDS | 40.0% | |
| TATCCAACAAGCAATGCTGA+AGG | + | chr4_3:54699040-54699059 | Msa0648250:CDS | 40.0% | |
| TTCAAACTTCACCATGCACT+TGG | + | chr4_3:54699073-54699092 | Msa0648250:CDS | 40.0% | |
| GGAAAAGACAAAGGAAGAGA+AGG | - | chr4_3:54699154-54699173 | None:intergenic | 40.0% | |
| TTGCGTGAAGGAAAAGACAA+AGG | - | chr4_3:54699163-54699182 | None:intergenic | 40.0% | |
| ! | AATTGTGATGGTTTGCGTGA+AGG | - | chr4_3:54699175-54699194 | None:intergenic | 40.0% |
| AAAGGGGGAATATGGTTGAA+GGG | - | chr4_3:54699231-54699250 | None:intergenic | 40.0% | |
| AAAAGGGGGAATATGGTTGA+AGG | - | chr4_3:54699232-54699251 | None:intergenic | 40.0% | |
| GGAATTGAAAAGGGGGAATA+TGG | - | chr4_3:54699239-54699258 | None:intergenic | 40.0% | |
| CAGTGAAGGAATTGAAAAGG+GGG | - | chr4_3:54699246-54699265 | None:intergenic | 40.0% | |
| AACACCTATATGGAATGGTG+AGG | + | chr4_3:54699312-54699331 | Msa0648250:CDS | 40.0% | |
| GATCCTTTATCGCTGTAGTA+TGG | + | chr4_3:54699472-54699491 | Msa0648250:intron | 40.0% | |
| !!! | AGAGAGGACTGGTTTTTGAA+CGG | - | chr4_3:54700160-54700179 | None:intergenic | 40.0% |
| ! | TCTATACCGAAGAGTGTGTT+TGG | + | chr4_3:54700177-54700196 | Msa0648250:intron | 40.0% |
| CATCATCCAAACACACTCTT+CGG | - | chr4_3:54700186-54700205 | None:intergenic | 40.0% | |
| !!! | GCAAAGTGACCCCTATTTTT+TGG | - | chr4_3:54700671-54700690 | None:intergenic | 40.0% |
| !!! | GGGGTCACTTTGCAATTTTT+TGG | + | chr4_3:54700678-54700697 | Msa0648250:intron | 40.0% |
| CTCCTATCCAAACACACTAA+CGG | + | chr4_3:54700927-54700946 | Msa0648250:intron | 40.0% | |
| AACCGTTAGTGTGTTTGGAT+AGG | - | chr4_3:54700932-54700951 | None:intergenic | 40.0% | |
| CCCAGCAATATGTATGAACT+TGG | - | chr4_3:54701044-54701063 | None:intergenic | 40.0% | |
| TTGCTTAGTACCAGGAACAT+TGG | + | chr4_3:54701298-54701317 | Msa0648250:CDS | 40.0% | |
| ! | TTGGTAACTTCCAATGTTCC+TGG | - | chr4_3:54701311-54701330 | None:intergenic | 40.0% |
| ! | AGGCTGATTCAAAATCTCCT+TGG | + | chr4_3:54701350-54701369 | Msa0648250:CDS | 40.0% |
| ! | GGCTGATTCAAAATCTCCTT+GGG | + | chr4_3:54701351-54701370 | Msa0648250:CDS | 40.0% |
| ! | GCTGATTCAAAATCTCCTTG+GGG | + | chr4_3:54701352-54701371 | Msa0648250:CDS | 40.0% |
| CTGATTCAAAATCTCCTTGG+GGG | + | chr4_3:54701353-54701372 | Msa0648250:CDS | 40.0% | |
| AAAGAAATATGGTTCCCCCA+AGG | - | chr4_3:54701370-54701389 | None:intergenic | 40.0% | |
| CTAACCCCTTAGAATTTGTC+TGG | + | chr4_3:54701431-54701450 | Msa0648250:CDS | 40.0% | |
| GCTGAAATTAAGAGGACATG+AGG | + | chr4_3:54701528-54701547 | Msa0648250:CDS | 40.0% | |
| GAAATTAAGAGGACATGAGG+TGG | + | chr4_3:54701531-54701550 | Msa0648250:intron | 40.0% | |
| GTAAAGTACAAGCCTTTCAC+AGG | - | chr4_3:54701738-54701757 | None:intergenic | 40.0% | |
| GGCTTGTACTTTACAATGAC+AGG | + | chr4_3:54701744-54701763 | Msa0648250:CDS | 40.0% | |
| ! | GTTAAGATGATGGTTACCTC+AGG | - | chr4_3:54701774-54701793 | None:intergenic | 40.0% |
| TATAAAGAAGCAGAAGGGCA+TGG | + | chr4_3:54702055-54702074 | Msa0648250:three_prime_UTR | 40.0% | |
| ! | ATAAAGAAGCAGAAGGGCAT+GGG | + | chr4_3:54702056-54702075 | Msa0648250:three_prime_UTR | 40.0% |
| CTTTCAGTGTGAGTTTGAAG+AGG | + | chr4_3:54702082-54702101 | Msa0648250:three_prime_UTR | 40.0% | |
| GCTAACAAACTACGGTTACT+TGG | + | chr4_3:54702282-54702301 | Msa0648250:three_prime_UTR | 40.0% | |
| ! | TGGCTCTGTCACATCTTCAA+AGG | - | chr4_3:54698585-54698604 | None:intergenic | 45.0% |
| GCAGCTTGAAGACCATATGA+AGG | + | chr4_3:54698892-54698911 | Msa0648250:CDS | 45.0% | |
| CACCACAAGACAAACCACTT+TGG | + | chr4_3:54698999-54699018 | Msa0648250:CDS | 45.0% | |
| ! | TCCCAAAGTGGTTTGTCTTG+TGG | - | chr4_3:54699004-54699023 | None:intergenic | 45.0% |
| GTTCCTTCAGCATTGCTTGT+TGG | - | chr4_3:54699046-54699065 | None:intergenic | 45.0% | |
| AGTAACCATCACCAAGTGCA+TGG | - | chr4_3:54699087-54699106 | None:intergenic | 45.0% | |
| !! | TGGTGATGGTTACTCTCTCA+TGG | + | chr4_3:54699093-54699112 | Msa0648250:CDS | 45.0% |
| ! | GGTGATGGTTACTCTCTCAT+GGG | + | chr4_3:54699094-54699113 | Msa0648250:CDS | 45.0% |
| GCTCCATCCAAAATCAGTGA+AGG | - | chr4_3:54699260-54699279 | None:intergenic | 45.0% | |
| CCTTCCTCACCATTCCATAT+AGG | - | chr4_3:54699319-54699338 | None:intergenic | 45.0% | |
| CCTATATGGAATGGTGAGGA+AGG | + | chr4_3:54699316-54699335 | Msa0648250:CDS | 45.0% | |
| GATCAAGTCTAAGCTTGGAG+TGG | + | chr4_3:54699399-54699418 | Msa0648250:CDS | 45.0% | |
| GCACCATACTACAGCGATAA+AGG | - | chr4_3:54699478-54699497 | None:intergenic | 45.0% | |
| ACACACTCTTCGGTATAGAG+AGG | - | chr4_3:54700176-54700195 | None:intergenic | 45.0% | |
| !! | GATTGGTGTTGCTTAGTACC+AGG | + | chr4_3:54701290-54701309 | Msa0648250:CDS | 45.0% |
| ! | TTCTAAGGGGTTAGATAGGC+TGG | - | chr4_3:54701425-54701444 | None:intergenic | 45.0% |
| ATCCAATTTGATTGGGCCAG+TGG | + | chr4_3:54701689-54701708 | Msa0648250:CDS | 45.0% | |
| TTCCACTGGCCCAATCAAAT+TGG | - | chr4_3:54701694-54701713 | None:intergenic | 45.0% | |
| TTGGCAAACCATCCTGTGAA+AGG | + | chr4_3:54701723-54701742 | Msa0648250:CDS | 45.0% | |
| AGTACAAGCCTTTCACAGGA+TGG | - | chr4_3:54701734-54701753 | None:intergenic | 45.0% | |
| GTGCATAGTAAGAGCCTTTG+AGG | + | chr4_3:54701975-54701994 | Msa0648250:CDS | 45.0% | |
| !! | AGCCTTTGAGGTCATATCCA+AGG | + | chr4_3:54701987-54702006 | Msa0648250:CDS | 45.0% |
| TGCCTTGGATATGACCTCAA+AGG | - | chr4_3:54701992-54702011 | None:intergenic | 45.0% | |
| GGTCATATCCAAGGCAGTAA+TGG | + | chr4_3:54701996-54702015 | Msa0648250:CDS | 45.0% | |
| GGAAATCTCCATTACTGCCT+TGG | - | chr4_3:54702007-54702026 | None:intergenic | 45.0% | |
| !!! | TTTTAGAAAAATTATTTTTT+AGG | + | chr4_3:54699727-54699746 | Msa0648250:intron | 5.0% |
| !!! | TTTAGAAAAATTATTTTTTA+GGG | + | chr4_3:54699728-54699747 | Msa0648250:intron | 5.0% |
| !!! | TTATATTTTTTTGAAAATTT+TGG | + | chr4_3:54699786-54699805 | Msa0648250:intron | 5.0% |
| !!! | TATATTTTTTTGAAAATTTT+GGG | + | chr4_3:54699787-54699806 | Msa0648250:intron | 5.0% |
| !!! | TTTGTATTTTTTTTTTTTTT+TGG | + | chr4_3:54701165-54701184 | Msa0648250:intron | 5.0% |
| ACAGAGCCAGTAAGTCCAAG+TGG | + | chr4_3:54698596-54698615 | Msa0648250:CDS | 50.0% | |
| ! | GAGGAGAAGCGTGGATTGAT+AGG | - | chr4_3:54698728-54698747 | None:intergenic | 50.0% |
| TCCACGCTTCTCCTCCATAA+TGG | + | chr4_3:54698733-54698752 | Msa0648250:CDS | 50.0% | |
| ACCATTATGGAGGAGAAGCG+TGG | - | chr4_3:54698737-54698756 | None:intergenic | 50.0% | |
| ! | CTTCACCATGCACTTGGTGA+TGG | + | chr4_3:54699079-54699098 | Msa0648250:CDS | 50.0% |
| CTCTTCGGTATAGAGAGGAC+TGG | - | chr4_3:54700171-54700190 | None:intergenic | 50.0% | |
| GCTGCATCACCATATTGCAG+CGG | + | chr4_3:54701010-54701029 | Msa0648250:intron | 50.0% | |
| TCACCATATTGCAGCGGTAG+AGG | + | chr4_3:54701016-54701035 | Msa0648250:intron | 50.0% | |
| GATCCTCTACCGCTGCAATA+TGG | - | chr4_3:54701022-54701041 | None:intergenic | 50.0% | |
| !! | GCTTGGCACAACTTTGGGAT+TGG | - | chr4_3:54701403-54701422 | None:intergenic | 50.0% |
| ! | GGATGGTTTGCCAAAGCCAT+AGG | - | chr4_3:54701717-54701736 | None:intergenic | 50.0% |
| TACAATGACAGGTGGACCTG+AGG | + | chr4_3:54701755-54701774 | Msa0648250:CDS | 50.0% | |
| !! | GGCTGGCTTGGCACAACTTT+GGG | - | chr4_3:54701408-54701427 | None:intergenic | 55.0% |
| !! | AGGCTGGCTTGGCACAACTT+TGG | - | chr4_3:54701409-54701428 | None:intergenic | 55.0% |
| ! | AGGGGTTAGATAGGCTGGCT+TGG | - | chr4_3:54701420-54701439 | None:intergenic | 55.0% |
| GATTGGGCCAGTGGAACCTA+TGG | + | chr4_3:54701698-54701717 | Msa0648250:CDS | 55.0% | |
| GCCAGTGGAACCTATGGCTT+TGG | + | chr4_3:54701704-54701723 | Msa0648250:CDS | 55.0% | |
| GCCAAAGCCATAGGTTCCAC+TGG | - | chr4_3:54701708-54701727 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 54698511 | 54702420 | 54698511 | ID=Msa0648250;Name=Msa0648250 |
| chr4_3 | mRNA | 54698511 | 54702420 | 54698511 | ID=Msa0648250-mRNA-1;Parent=Msa0648250;Name=Msa0648250-mRNA-1;_AED=0.40;_eAED=0.40;_QI=64|1|1|1|1|1|5|376|468 |
| chr4_3 | exon | 54698511 | 54698754 | 54698511 | ID=Msa0648250-mRNA-1:exon:13876;Parent=Msa0648250-mRNA-1 |
| chr4_3 | exon | 54698848 | 54699420 | 54698848 | ID=Msa0648250-mRNA-1:exon:13877;Parent=Msa0648250-mRNA-1 |
| chr4_3 | exon | 54701196 | 54701549 | 54701196 | ID=Msa0648250-mRNA-1:exon:13878;Parent=Msa0648250-mRNA-1 |
| chr4_3 | exon | 54701639 | 54701776 | 54701639 | ID=Msa0648250-mRNA-1:exon:13879;Parent=Msa0648250-mRNA-1 |
| chr4_3 | exon | 54701883 | 54702420 | 54701883 | ID=Msa0648250-mRNA-1:exon:13880;Parent=Msa0648250-mRNA-1 |
| chr4_3 | five_prime_UTR | 54698511 | 54698574 | 54698511 | ID=Msa0648250-mRNA-1:five_prime_utr;Parent=Msa0648250-mRNA-1 |
| chr4_3 | CDS | 54698575 | 54698754 | 54698575 | ID=Msa0648250-mRNA-1:cds;Parent=Msa0648250-mRNA-1 |
| chr4_3 | CDS | 54698848 | 54699420 | 54698848 | ID=Msa0648250-mRNA-1:cds;Parent=Msa0648250-mRNA-1 |
| chr4_3 | CDS | 54701196 | 54701549 | 54701196 | ID=Msa0648250-mRNA-1:cds;Parent=Msa0648250-mRNA-1 |
| chr4_3 | CDS | 54701639 | 54701776 | 54701639 | ID=Msa0648250-mRNA-1:cds;Parent=Msa0648250-mRNA-1 |
| chr4_3 | CDS | 54701883 | 54702044 | 54701883 | ID=Msa0648250-mRNA-1:cds;Parent=Msa0648250-mRNA-1 |
| chr4_3 | three_prime_UTR | 54702045 | 54702420 | 54702045 | ID=Msa0648250-mRNA-1:three_prime_utr;Parent=Msa0648250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
