Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558350 | XP_024638127.1 | 97.814 | 366 | 7 | 1 | 1 | 365 | 1 | 366 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558350 | A0A396IA44 | 97.814 | 366 | 7 | 1 | 1 | 365 | 1 | 366 | 0.0 | 744 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0171850 | Msa0558350 | 0.803835 | 2.883933e-49 | -8.615850e-47 |
| Msa0321190 | Msa0558350 | 0.800729 | 1.257037e-48 | -8.615850e-47 |
| Msa0558350 | Msa0724150 | 0.809182 | 2.147614e-50 | -8.615850e-47 |
| Msa0558350 | Msa1114040 | 0.824836 | 6.505404e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558350 | MtrunA17_Chr4g0047961 | 97.814 | 366 | 7 | 1 | 1 | 365 | 1 | 366 | 0.0 | 744 |
| Msa0558350 | MtrunA17_Chr2g0281421 | 75.269 | 372 | 82 | 2 | 2 | 363 | 21 | 392 | 0.0 | 585 |
| Msa0558350 | MtrunA17_Chr1g0189401 | 56.550 | 313 | 128 | 3 | 59 | 363 | 79 | 391 | 5.70e-128 | 372 |
| Msa0558350 | MtrunA17_Chr2g0276851 | 54.397 | 307 | 136 | 3 | 59 | 363 | 80 | 384 | 1.96e-123 | 361 |
| Msa0558350 | MtrunA17_Chr8g0381601 | 46.735 | 291 | 141 | 8 | 61 | 351 | 103 | 379 | 1.43e-83 | 259 |
| Msa0558350 | MtrunA17_Chr3g0123571 | 50.198 | 253 | 119 | 6 | 59 | 311 | 102 | 347 | 1.92e-83 | 259 |
| Msa0558350 | MtrunA17_Chr7g0227041 | 45.361 | 291 | 146 | 6 | 61 | 351 | 110 | 387 | 1.64e-81 | 254 |
| Msa0558350 | MtrunA17_Chr8g0381611 | 49.004 | 251 | 121 | 5 | 61 | 311 | 95 | 338 | 4.80e-80 | 250 |
| Msa0558350 | MtrunA17_Chr2g0326801 | 43.234 | 303 | 158 | 7 | 52 | 354 | 91 | 379 | 1.31e-79 | 249 |
| Msa0558350 | MtrunA17_Chr4g0028891 | 45.255 | 274 | 143 | 5 | 38 | 311 | 101 | 367 | 5.17e-77 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558350 | AT1G61240.4 | 63.807 | 373 | 115 | 6 | 2 | 360 | 25 | 391 | 1.80e-170 | 482 |
| Msa0558350 | AT1G61240.5 | 63.807 | 373 | 115 | 6 | 2 | 360 | 25 | 391 | 1.80e-170 | 482 |
| Msa0558350 | AT1G61240.6 | 63.807 | 373 | 115 | 6 | 2 | 360 | 25 | 391 | 1.80e-170 | 482 |
| Msa0558350 | AT1G61240.2 | 63.807 | 373 | 115 | 6 | 2 | 360 | 25 | 391 | 1.80e-170 | 482 |
| Msa0558350 | AT1G61240.1 | 63.807 | 373 | 115 | 6 | 2 | 360 | 25 | 391 | 1.80e-170 | 482 |
| Msa0558350 | AT1G61240.3 | 63.807 | 373 | 115 | 6 | 2 | 360 | 25 | 391 | 1.80e-170 | 482 |
| Msa0558350 | AT1G11170.1 | 61.126 | 373 | 128 | 5 | 1 | 361 | 27 | 394 | 6.84e-166 | 471 |
| Msa0558350 | AT1G11170.6 | 61.126 | 373 | 128 | 5 | 1 | 361 | 27 | 394 | 6.84e-166 | 471 |
| Msa0558350 | AT1G11170.5 | 61.126 | 373 | 128 | 5 | 1 | 361 | 27 | 394 | 6.84e-166 | 471 |
| Msa0558350 | AT1G11170.7 | 61.126 | 373 | 128 | 5 | 1 | 361 | 27 | 394 | 6.84e-166 | 471 |
| Msa0558350 | AT1G61240.8 | 68.987 | 316 | 86 | 3 | 56 | 360 | 10 | 324 | 6.56e-163 | 460 |
| Msa0558350 | AT1G61240.7 | 65.517 | 319 | 100 | 4 | 2 | 315 | 25 | 338 | 5.58e-152 | 432 |
| Msa0558350 | AT1G11170.4 | 64.151 | 318 | 104 | 4 | 1 | 313 | 27 | 339 | 8.07e-150 | 426 |
| Msa0558350 | AT1G11170.8 | 64.151 | 318 | 104 | 4 | 1 | 313 | 27 | 339 | 8.07e-150 | 426 |
| Msa0558350 | AT1G11170.3 | 64.151 | 318 | 104 | 4 | 1 | 313 | 27 | 339 | 1.44e-149 | 427 |
| Msa0558350 | AT1G11170.2 | 64.041 | 292 | 95 | 4 | 1 | 287 | 27 | 313 | 2.16e-134 | 387 |
| Msa0558350 | AT4G12840.2 | 54.890 | 317 | 127 | 3 | 61 | 364 | 82 | 395 | 1.40e-129 | 377 |
| Msa0558350 | AT4G12840.1 | 54.890 | 317 | 127 | 3 | 61 | 364 | 82 | 395 | 1.61e-129 | 377 |
| Msa0558350 | AT4G12840.3 | 54.605 | 304 | 122 | 3 | 74 | 364 | 1 | 301 | 3.10e-122 | 355 |
| Msa0558350 | AT4G18530.3 | 52.381 | 315 | 139 | 3 | 59 | 362 | 70 | 384 | 9.65e-117 | 344 |
| Msa0558350 | AT4G18530.1 | 52.381 | 315 | 139 | 3 | 59 | 362 | 75 | 389 | 1.32e-116 | 343 |
| Msa0558350 | AT4G18530.2 | 56.087 | 230 | 100 | 1 | 59 | 287 | 75 | 304 | 5.11e-93 | 281 |
| Msa0558350 | AT1G11170.9 | 60.000 | 230 | 82 | 4 | 1 | 225 | 27 | 251 | 5.76e-91 | 273 |
| Msa0558350 | AT1G67850.4 | 52.590 | 251 | 112 | 6 | 61 | 311 | 91 | 334 | 1.85e-82 | 256 |
| Msa0558350 | AT1G67850.6 | 52.590 | 251 | 112 | 6 | 61 | 311 | 107 | 350 | 3.39e-82 | 256 |
| Msa0558350 | AT1G67850.7 | 52.590 | 251 | 112 | 6 | 61 | 311 | 107 | 350 | 3.39e-82 | 256 |
| Msa0558350 | AT1G67850.1 | 52.590 | 251 | 112 | 6 | 61 | 311 | 107 | 350 | 3.39e-82 | 256 |
| Msa0558350 | AT1G67850.3 | 52.590 | 251 | 112 | 6 | 61 | 311 | 107 | 350 | 3.39e-82 | 256 |
| Msa0558350 | AT1G67850.2 | 52.590 | 251 | 112 | 6 | 61 | 311 | 107 | 350 | 3.39e-82 | 256 |
| Msa0558350 | AT1G67850.5 | 52.590 | 251 | 112 | 6 | 61 | 311 | 107 | 350 | 3.39e-82 | 256 |
| Msa0558350 | AT1G08040.3 | 45.048 | 313 | 153 | 9 | 52 | 364 | 83 | 376 | 6.05e-82 | 254 |
| Msa0558350 | AT1G08040.2 | 45.048 | 313 | 153 | 9 | 52 | 364 | 87 | 380 | 8.44e-82 | 254 |
| Msa0558350 | AT1G08040.4 | 45.048 | 313 | 153 | 9 | 52 | 364 | 87 | 380 | 8.44e-82 | 254 |
| Msa0558350 | AT1G08040.1 | 45.048 | 313 | 153 | 9 | 52 | 364 | 87 | 380 | 8.44e-82 | 254 |
| Msa0558350 | AT3G26440.1 | 48.810 | 252 | 123 | 5 | 61 | 312 | 101 | 346 | 1.74e-81 | 254 |
| Msa0558350 | AT3G26440.2 | 48.810 | 252 | 123 | 5 | 61 | 312 | 101 | 346 | 1.74e-81 | 254 |
| Msa0558350 | AT3G26440.4 | 48.810 | 252 | 123 | 5 | 61 | 312 | 77 | 322 | 2.06e-81 | 253 |
| Msa0558350 | AT3G26440.3 | 49.004 | 251 | 122 | 5 | 61 | 311 | 101 | 345 | 3.06e-81 | 253 |
| Msa0558350 | AT3G26440.5 | 48.810 | 252 | 123 | 5 | 61 | 312 | 124 | 369 | 4.11e-81 | 254 |
| Msa0558350 | AT3G26440.6 | 48.810 | 252 | 123 | 5 | 61 | 312 | 124 | 369 | 4.39e-81 | 254 |
| Msa0558350 | AT1G13000.2 | 49.801 | 251 | 119 | 6 | 61 | 311 | 111 | 354 | 5.97e-80 | 250 |
| Msa0558350 | AT1G13000.5 | 49.801 | 251 | 119 | 6 | 61 | 311 | 111 | 354 | 5.97e-80 | 250 |
| Msa0558350 | AT1G13000.4 | 49.801 | 251 | 119 | 6 | 61 | 311 | 111 | 354 | 5.97e-80 | 250 |
| Msa0558350 | AT1G13000.1 | 49.801 | 251 | 119 | 6 | 61 | 311 | 111 | 354 | 5.97e-80 | 250 |
| Msa0558350 | AT3G27470.2 | 43.000 | 300 | 157 | 8 | 52 | 351 | 94 | 379 | 8.62e-80 | 250 |
| Msa0558350 | AT3G27470.1 | 43.000 | 300 | 157 | 8 | 52 | 351 | 94 | 379 | 8.62e-80 | 250 |
| Msa0558350 | AT3G27470.4 | 43.000 | 300 | 157 | 8 | 52 | 351 | 94 | 379 | 8.62e-80 | 250 |
| Msa0558350 | AT3G27470.3 | 43.000 | 300 | 157 | 8 | 52 | 351 | 94 | 379 | 8.62e-80 | 250 |
| Msa0558350 | AT1G24570.1 | 46.528 | 288 | 140 | 7 | 61 | 347 | 83 | 357 | 9.54e-80 | 249 |
| Msa0558350 | AT1G24570.2 | 46.528 | 288 | 140 | 7 | 61 | 347 | 90 | 364 | 1.32e-79 | 249 |
| Msa0558350 | AT3G27470.5 | 43.000 | 300 | 157 | 8 | 52 | 351 | 94 | 379 | 1.49e-79 | 249 |
| Msa0558350 | AT2G28310.2 | 43.537 | 294 | 152 | 6 | 61 | 354 | 87 | 366 | 3.98e-78 | 245 |
| Msa0558350 | AT2G28310.1 | 43.537 | 294 | 152 | 6 | 61 | 354 | 87 | 366 | 3.98e-78 | 245 |
| Msa0558350 | AT2G28310.3 | 43.537 | 294 | 152 | 6 | 61 | 354 | 87 | 366 | 3.98e-78 | 245 |
| Msa0558350 | AT1G13000.3 | 48.178 | 247 | 117 | 6 | 41 | 287 | 96 | 331 | 6.94e-73 | 230 |
| Msa0558350 | AT2G25905.1 | 54.688 | 128 | 56 | 2 | 79 | 205 | 101 | 227 | 1.06e-40 | 143 |
Find 97 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTTTCAACTCTTGAAAA+TGG | 0.168400 | 4_1:-57046332 | None:intergenic |
| ATTCTCAATTCACTCAATTT+TGG | 0.169431 | 4_1:+57049189 | Msa0558350:three_prime_UTR |
| CAAAAGAATATTGAGAAATA+TGG | 0.179411 | 4_1:-57049218 | None:intergenic |
| CGTCTTTAATCAGTCTTAAA+TGG | 0.196468 | 4_1:-57049025 | None:intergenic |
| TGTGATGAAGACTGAATAAA+AGG | 0.243456 | 4_1:+57045613 | Msa0558350:five_prime_UTR |
| TGATGTATCTCTGTCGAATT+TGG | 0.245570 | 4_1:-57047318 | None:intergenic |
| TTTATGATTACATCTTTCTT+TGG | 0.246330 | 4_1:+57047023 | Msa0558350:CDS |
| AAGTTACCTGTGCACTTTCT+TGG | 0.268852 | 4_1:-57047364 | None:intergenic |
| ATACATGCAACTGCCATAAA+AGG | 0.319262 | 4_1:-57045864 | None:intergenic |
| GCAGATATGTTGAGATTGTA+AGG | 0.347868 | 4_1:+57047259 | Msa0558350:intron |
| TTATGATTACATCTTTCTTT+GGG | 0.350251 | 4_1:+57047024 | Msa0558350:CDS |
| ATTGTTAAGAAAACAGTTAG+TGG | 0.376779 | 4_1:-57049066 | None:intergenic |
| CATCCACATTGGCATCATAA+TGG | 0.394344 | 4_1:-57046723 | None:intergenic |
| TTACACAAAGCGTAATTTGC+TGG | 0.396531 | 4_1:+57046541 | Msa0558350:CDS |
| TTGTACTTGGCATCTTATAC+AGG | 0.402060 | 4_1:+57047845 | Msa0558350:CDS |
| GATCTTGATCGCAACCATAA+AGG | 0.405000 | 4_1:-57046399 | None:intergenic |
| ATGGTCTTATATATAGTTAT+AGG | 0.410725 | 4_1:+57049139 | Msa0558350:three_prime_UTR |
| GGGCAGGTTTGTTGAAGGTA+TGG | 0.414700 | 4_1:+57047794 | Msa0558350:intron |
| GAAAGCCTCACCTCAGTTCT+CGG | 0.415259 | 4_1:-57048850 | None:intergenic |
| TCTTTGGGATGAGGATTTAG+AGG | 0.418212 | 4_1:+57047039 | Msa0558350:CDS |
| CCATGCTGATCGAGAGAAAA+CGG | 0.429629 | 4_1:-57047820 | None:intergenic |
| GCCTTTCAACTCTTGAAAAT+GGG | 0.429799 | 4_1:-57046331 | None:intergenic |
| ATTCAGTCTTCATCACAAAC+TGG | 0.443138 | 4_1:-57045607 | None:intergenic |
| AAAAGAATATTGAGAAATAT+GGG | 0.443411 | 4_1:-57049217 | None:intergenic |
| CTCAGAATGACCTTGTCCAT+GGG | 0.449329 | 4_1:+57048079 | Msa0558350:intron |
| ATGGATGGCGGGATCTTGAC+TGG | 0.452260 | 4_1:+57046743 | Msa0558350:CDS |
| ATCACTTTCATCTGAACACT+TGG | 0.453203 | 4_1:-57047494 | None:intergenic |
| AATCAAGTTTGAAGATCAAA+AGG | 0.455765 | 4_1:+57045838 | Msa0558350:CDS |
| GTTGAGATTGTAAGGGAAGA+AGG | 0.461152 | 4_1:+57047267 | Msa0558350:CDS |
| TGTAGATGCTATGGTGCAAA+AGG | 0.461764 | 4_1:+57046595 | Msa0558350:CDS |
| TTGAGATTGTAAGGGAAGAA+GGG | 0.464317 | 4_1:+57047268 | Msa0558350:CDS |
| TCATAAATATACACTATATC+CGG | 0.465522 | 4_1:-57047007 | None:intergenic |
| TTTGTTCTTTCATGTGGCAG+AGG | 0.473392 | 4_1:+57049237 | Msa0558350:three_prime_UTR |
| CACAAGGCAATACCAACTCT+TGG | 0.475155 | 4_1:+57048325 | Msa0558350:CDS |
| GATTGTAAGGGAAGAAGGGT+TGG | 0.478759 | 4_1:+57047272 | Msa0558350:CDS |
| AATGACCTTGTCCATGGGTG+GGG | 0.481878 | 4_1:+57048084 | Msa0558350:CDS |
| TCTCAGAATGACCTTGTCCA+TGG | 0.484262 | 4_1:+57048078 | Msa0558350:intron |
| AGTGATGGGCCACCGTGCAC+CGG | 0.486583 | 4_1:+57047511 | Msa0558350:CDS |
| GTCGAATTTGGATGAAGAGC+TGG | 0.487814 | 4_1:-57047306 | None:intergenic |
| AAAGTATAATGTAGATGCTA+TGG | 0.487995 | 4_1:+57046586 | Msa0558350:CDS |
| TTACATCTTTCTTTGGGATG+AGG | 0.491595 | 4_1:+57047030 | Msa0558350:CDS |
| CCTTGTCCATGGGTGGGGAA+TGG | 0.507580 | 4_1:+57048089 | Msa0558350:CDS |
| CCATCACCGAGGACAAAAGT+TGG | 0.509891 | 4_1:+57048996 | Msa0558350:CDS |
| GATCAGCATGGTATTGTACT+TGG | 0.510197 | 4_1:+57047832 | Msa0558350:CDS |
| TTAAAATCTTCAAAGAGCGC+TGG | 0.510635 | 4_1:+57048966 | Msa0558350:CDS |
| TCAGTTCTCGGATCAACTGC+TGG | 0.511607 | 4_1:-57048838 | None:intergenic |
| CATTGATTTCAGTTTCTCAC+AGG | 0.512167 | 4_1:+57046679 | Msa0558350:intron |
| CATGCTGATCGAGAGAAAAC+GGG | 0.515431 | 4_1:-57047819 | None:intergenic |
| AATTTGGGCAGGTTTGTTGA+AGG | 0.516245 | 4_1:+57047789 | Msa0558350:intron |
| CATTATGATGCCAATGTGGA+TGG | 0.538429 | 4_1:+57046724 | Msa0558350:CDS |
| GTGATGGGCCACCGTGCACC+GGG | 0.538581 | 4_1:+57047512 | Msa0558350:CDS |
| GAGTGAATTGAGAATTCACT+TGG | 0.541447 | 4_1:-57049181 | None:intergenic |
| ATGCTTCTGAGCAGATAAGA+AGG | 0.542594 | 4_1:+57048927 | Msa0558350:intron |
| AGAATGACCTTGTCCATGGG+TGG | 0.544063 | 4_1:+57048082 | Msa0558350:intron |
| CATCACCGAGGACAAAAGTT+GGG | 0.546912 | 4_1:+57048997 | Msa0558350:CDS |
| GTGTGAAAGTCATACCTTGA+CGG | 0.553954 | 4_1:-57047076 | None:intergenic |
| GAAACTAGGATACTGTGCTC+AGG | 0.556174 | 4_1:+57048116 | Msa0558350:CDS |
| TGCCAATGTGGATGGATGGC+GGG | 0.560546 | 4_1:+57046732 | Msa0558350:CDS |
| GAATGACCTTGTCCATGGGT+GGG | 0.563244 | 4_1:+57048083 | Msa0558350:intron |
| TCATATCCATTCCCCACCCA+TGG | 0.564572 | 4_1:-57048095 | None:intergenic |
| AACAATTCATTCAATTAACA+TGG | 0.566339 | 4_1:+57049083 | Msa0558350:three_prime_UTR |
| TGGGGAATGGATATGAAACT+AGG | 0.566671 | 4_1:+57048102 | Msa0558350:CDS |
| AGATAAGAAGGCAATCAGCA+TGG | 0.567644 | 4_1:+57048939 | Msa0558350:intron |
| AATTTGCTGGCTGTTGCAGT+TGG | 0.570310 | 4_1:+57046554 | Msa0558350:CDS |
| GAGTATCTGGAGAGAGCAAG+AGG | 0.574029 | 4_1:+57046071 | Msa0558350:CDS |
| ATAGAATTACAGTCAGAGCT+AGG | 0.577411 | 4_1:+57047340 | Msa0558350:CDS |
| ATTAAAGACGTGTACGACAA+AGG | 0.581150 | 4_1:+57049038 | Msa0558350:exon |
| CAGATATGTTGAGATTGTAA+GGG | 0.582200 | 4_1:+57047260 | Msa0558350:intron |
| AAGTGTTCAGATGAAAGTGA+TGG | 0.582304 | 4_1:+57047496 | Msa0558350:CDS |
| AAGGCAATACCAACTCTTGG+TGG | 0.586569 | 4_1:+57048328 | Msa0558350:CDS |
| GATAAGAAGGCAATCAGCAT+GGG | 0.590121 | 4_1:+57048940 | Msa0558350:intron |
| CTAGCTTCATTCATAGCCCA+TGG | 0.592499 | 4_1:+57049120 | Msa0558350:three_prime_UTR |
| CTAGGACCAAGAAAGTGCAC+AGG | 0.593618 | 4_1:+57047358 | Msa0558350:CDS |
| TATAACTATATATAAGACCA+TGG | 0.596770 | 4_1:-57049137 | None:intergenic |
| CCATTCCCCACCCATGGACA+AGG | 0.600227 | 4_1:-57048089 | None:intergenic |
| AGTGTTCAGATGAAAGTGAT+GGG | 0.603765 | 4_1:+57047497 | Msa0558350:CDS |
| GTATCAGTATAAGCAAGAAG+AGG | 0.605402 | 4_1:+57045920 | Msa0558350:CDS |
| ATGGTTGCGATCAAGATCAA+AGG | 0.608476 | 4_1:+57046404 | Msa0558350:CDS |
| GGAGATCGCAGTCAGAATGT+TGG | 0.608724 | 4_1:+57048277 | Msa0558350:CDS |
| GTAATTAATTACCCGGTGCA+CGG | 0.611574 | 4_1:-57047523 | None:intergenic |
| TGAAGTCTATCAAATCATGC+AGG | 0.615550 | 4_1:+57045649 | Msa0558350:five_prime_UTR |
| ATAACTATATATAAGACCAT+GGG | 0.629412 | 4_1:-57049136 | None:intergenic |
| ATCCCGCCATCCATCCACAT+TGG | 0.630093 | 4_1:-57046734 | None:intergenic |
| ATGATGCCAATGTGGATGGA+TGG | 0.633000 | 4_1:+57046728 | Msa0558350:CDS |
| TGACTGCTACCACCAAGAGT+TGG | 0.638882 | 4_1:-57048337 | None:intergenic |
| ATGCCAATGTGGATGGATGG+CGG | 0.662036 | 4_1:+57046731 | Msa0558350:CDS |
| GTTCTCGGATCAACTGCTGG+TGG | 0.675254 | 4_1:-57048835 | None:intergenic |
| AGTGAATTGAGAATTCACTT+GGG | 0.678209 | 4_1:-57049180 | None:intergenic |
| TTGTTTCCTAATCAGAGACG+CGG | 0.682861 | 4_1:+57048808 | Msa0558350:intron |
| AGTCTATCAAATCATGCAGG+CGG | 0.691840 | 4_1:+57045652 | Msa0558350:five_prime_UTR |
| ATTAATTACCCGGTGCACGG+TGG | 0.706137 | 4_1:-57047520 | None:intergenic |
| AGCAGTTGATCCGAGAACTG+AGG | 0.706646 | 4_1:+57048840 | Msa0558350:CDS |
| GTTCCATTATGATGCCAATG+TGG | 0.713920 | 4_1:+57046720 | Msa0558350:CDS |
| GTAGTGTGTATTATACCTCG+TGG | 0.714595 | 4_1:-57046357 | None:intergenic |
| GAGTTGAAAGGCTTGCCACG+AGG | 0.724783 | 4_1:+57046342 | Msa0558350:CDS |
| AGACGAGTCTATGAACGCAG+AGG | 0.737399 | 4_1:+57047466 | Msa0558350:intron |
| CTGGAATCAAGCCATCACCG+AGG | 0.779303 | 4_1:+57048985 | Msa0558350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATATTAAATTTAA+AGG | - | chr4_1:57047997-57048016 | None:intergenic | 0.0% |
| !!! | ATTTAATATTATTTTTATAT+TGG | + | chr4_1:57048001-57048020 | Msa0558350:intron | 0.0% |
| !!! | TTTAATATTATTTTTATATT+GGG | + | chr4_1:57048002-57048021 | Msa0558350:intron | 0.0% |
| !!! | GTATTTTTTTATAATTTGTT+AGG | + | chr4_1:57046617-57046636 | Msa0558350:intron | 10.0% |
| !! | CAAAGAAAAAATTTATTAAT+TGG | + | chr4_1:57047225-57047244 | Msa0558350:intron | 10.0% |
| !! | AATGATTAAAATTCAAAATA+TGG | - | chr4_1:57047629-57047648 | None:intergenic | 10.0% |
| !!! | TATTTTGAATTTTAATCATT+AGG | + | chr4_1:57047629-57047648 | Msa0558350:intron | 10.0% |
| !!! | TTAGAAACTTTTATAAAATT+TGG | + | chr4_1:57047773-57047792 | Msa0558350:intron | 10.0% |
| !!! | TAGAAACTTTTATAAAATTT+GGG | + | chr4_1:57047774-57047793 | Msa0558350:intron | 10.0% |
| !!! | TTTATTTTGATCATTTATTT+TGG | - | chr4_1:57048547-57048566 | None:intergenic | 10.0% |
| !! | CAAAAAATGAAATTTCAAAT+TGG | - | chr4_1:57046016-57046035 | None:intergenic | 15.0% |
| !! | ATGATGAATTATCAAAATTA+TGG | - | chr4_1:57048050-57048069 | None:intergenic | 15.0% |
| !!! | TGAACATAAATTTATGATTT+TGG | - | chr4_1:57048395-57048414 | None:intergenic | 15.0% |
| !! | TTAATGAACTAAGATTATAA+GGG | - | chr4_1:57048751-57048770 | None:intergenic | 15.0% |
| !! | AAAAGAATATTGAGAAATAT+GGG | - | chr4_1:57049220-57049239 | None:intergenic | 15.0% |
| !! | CAATGAGTTTGAATAAAAAT+AGG | - | chr4_1:57045715-57045734 | None:intergenic | 20.0% |
| !!! | TAATGTTGTTCGTTTTATAT+AGG | + | chr4_1:57045889-57045908 | Msa0558350:CDS | 20.0% |
| !! | AATACATCAAAACTCAAATT+TGG | - | chr4_1:57046144-57046163 | None:intergenic | 20.0% |
| !! | TCATAAATATACACTATATC+CGG | - | chr4_1:57047010-57047029 | None:intergenic | 20.0% |
| !! | TTTATGATTACATCTTTCTT+TGG | + | chr4_1:57047023-57047042 | Msa0558350:CDS | 20.0% |
| !! | TTATGATTACATCTTTCTTT+GGG | + | chr4_1:57047024-57047043 | Msa0558350:CDS | 20.0% |
| !! | AAAGAAAGTAATTAATTACC+CGG | - | chr4_1:57047533-57047552 | None:intergenic | 20.0% |
| !!! | TTGAATTTTAATCATTAGGA+TGG | + | chr4_1:57047633-57047652 | Msa0558350:intron | 20.0% |
| !! | ATGAATCATAAAAACCATTT+AGG | + | chr4_1:57047885-57047904 | Msa0558350:intron | 20.0% |
| !!! | CATTCATTTGAATTTTGTTT+AGG | + | chr4_1:57047941-57047960 | Msa0558350:intron | 20.0% |
| !! | TGTATGTTGAATTTAATTAG+TGG | + | chr4_1:57048234-57048253 | Msa0558350:intron | 20.0% |
| !! | GATCATTAATGAATAATAAG+TGG | + | chr4_1:57048568-57048587 | Msa0558350:intron | 20.0% |
| !! | GAATAAATTTCACAATATAG+GGG | - | chr4_1:57048677-57048696 | None:intergenic | 20.0% |
| !! | GGAATAAATTTCACAATATA+GGG | - | chr4_1:57048678-57048697 | None:intergenic | 20.0% |
| !! | ATAAGGGATAAATCTTATAA+GGG | - | chr4_1:57048735-57048754 | None:intergenic | 20.0% |
| !! | TATAAGGGATAAATCTTATA+AGG | - | chr4_1:57048736-57048755 | None:intergenic | 20.0% |
| !! | GTTAATGAACTAAGATTATA+AGG | - | chr4_1:57048752-57048771 | None:intergenic | 20.0% |
| !! | AACAATTCATTCAATTAACA+TGG | + | chr4_1:57049083-57049102 | Msa0558350:three_prime_UTR | 20.0% |
| !! | ATAACTATATATAAGACCAT+GGG | - | chr4_1:57049139-57049158 | None:intergenic | 20.0% |
| !! | TATAACTATATATAAGACCA+TGG | - | chr4_1:57049140-57049159 | None:intergenic | 20.0% |
| !!! | ATGGTCTTATATATAGTTAT+AGG | + | chr4_1:57049139-57049158 | Msa0558350:three_prime_UTR | 20.0% |
| !! | CAAAAGAATATTGAGAAATA+TGG | - | chr4_1:57049221-57049240 | None:intergenic | 20.0% |
| ! | GAGTTTGAATAAAAATAGGA+CGG | - | chr4_1:57045711-57045730 | None:intergenic | 25.0% |
| !!! | GATAGAGATTTTTTCGTAAA+CGG | + | chr4_1:57045748-57045767 | Msa0558350:intron | 25.0% |
| ! | AATCAAGTTTGAAGATCAAA+AGG | + | chr4_1:57045838-57045857 | Msa0558350:CDS | 25.0% |
| ! | GTCTATCTGATAAATGTATA+TGG | - | chr4_1:57046043-57046062 | None:intergenic | 25.0% |
| ! | TTTATCAGATAGACAAAAAC+TGG | + | chr4_1:57046049-57046068 | Msa0558350:intron | 25.0% |
| ! | AAAGTATAATGTAGATGCTA+TGG | + | chr4_1:57046586-57046605 | Msa0558350:CDS | 25.0% |
| ! | ATGAATCTTCCTGTTATAAA+TGG | + | chr4_1:57046833-57046852 | Msa0558350:intron | 25.0% |
| ! | TTACTCAAACCATTTATAAC+AGG | - | chr4_1:57046845-57046864 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTCCCTTCAGAA+AGG | + | chr4_1:57047142-57047161 | Msa0558350:intron | 25.0% |
| !!! | TTTTTTTTTCCCTTCAGAAA+GGG | + | chr4_1:57047143-57047162 | Msa0558350:intron | 25.0% |
| ! | GGGTAATTAATTACTTTCTT+TGG | + | chr4_1:57047532-57047551 | Msa0558350:intron | 25.0% |
| ! | TTAATTACTTTCTTTGGACA+CGG | + | chr4_1:57047538-57047557 | Msa0558350:intron | 25.0% |
| ! | ATGTTCAAAATCTTGTACAT+TGG | + | chr4_1:57047594-57047613 | Msa0558350:intron | 25.0% |
| ! | AATTAACAACATTTCCTTTG+TGG | + | chr4_1:57047703-57047722 | Msa0558350:intron | 25.0% |
| ! | ATTAACAACATTTCCTTTGT+GGG | + | chr4_1:57047704-57047723 | Msa0558350:intron | 25.0% |
| !! | AACTTTTATAAAATTTGGGC+AGG | + | chr4_1:57047778-57047797 | Msa0558350:intron | 25.0% |
| ! | TTTATGATTCATATGAACCA+TGG | - | chr4_1:57047877-57047896 | None:intergenic | 25.0% |
| !! | ATAAAAACCATTTAGGTTCT+AGG | + | chr4_1:57047892-57047911 | Msa0558350:intron | 25.0% |
| ! | ATGCAAGTTAATTGGAATAA+GGG | - | chr4_1:57047924-57047943 | None:intergenic | 25.0% |
| ! | AATGCAAGTTAATTGGAATA+AGG | - | chr4_1:57047925-57047944 | None:intergenic | 25.0% |
| ! | TCAAATGAATGCAAGTTAAT+TGG | - | chr4_1:57047932-57047951 | None:intergenic | 25.0% |
| !! | TAGTGAATATGTTTTTCACA+AGG | + | chr4_1:57048309-57048328 | Msa0558350:CDS | 25.0% |
| !!! | ATTTATGATTTTGGAGAGAA+AGG | - | chr4_1:57048386-57048405 | None:intergenic | 25.0% |
| ! | TTTGTCAAGAAACATAAGAA+GGG | - | chr4_1:57048443-57048462 | None:intergenic | 25.0% |
| !! | TTTTGTCAAGAAACATAAGA+AGG | - | chr4_1:57048444-57048463 | None:intergenic | 25.0% |
| ! | GGGAATAAATTTCACAATAT+AGG | - | chr4_1:57048679-57048698 | None:intergenic | 25.0% |
| !! | ATGTGTTACAATTTTAGACA+AGG | - | chr4_1:57048909-57048928 | None:intergenic | 25.0% |
| ! | ATTGTTAAGAAAACAGTTAG+TGG | - | chr4_1:57049069-57049088 | None:intergenic | 25.0% |
| !! | ATTCTCAATTCACTCAATTT+TGG | + | chr4_1:57049189-57049208 | Msa0558350:three_prime_UTR | 25.0% |
| !! | TATTCTTTTGTTCTTTCATG+TGG | + | chr4_1:57049231-57049250 | Msa0558350:three_prime_UTR | 25.0% |
| ! | TAGTGTAAACAAAAAAGACA+AGG | - | chr4_1:57049270-57049289 | None:intergenic | 25.0% |
| TGTGATGAAGACTGAATAAA+AGG | + | chr4_1:57045613-57045632 | Msa0558350:five_prime_UTR | 30.0% | |
| !!! | AAGACACTCTTTTTTGTCAT+TGG | - | chr4_1:57045678-57045697 | None:intergenic | 30.0% |
| !! | AAAAAGAGTGTCTTGTTTGA+TGG | + | chr4_1:57045684-57045703 | Msa0558350:exon | 30.0% |
| ! | GAATGTGAATTTTCTTTGAC+AGG | + | chr4_1:57045812-57045831 | Msa0558350:intron | 30.0% |
| ACAAATGCTTAGCTAGTTAA+TGG | + | chr4_1:57046168-57046187 | Msa0558350:intron | 30.0% | |
| AGCTAGTTAATGGTAAATGA+TGG | + | chr4_1:57046178-57046197 | Msa0558350:intron | 30.0% | |
| TGTGTATTCTCTATTCACAT+TGG | + | chr4_1:57046276-57046295 | Msa0558350:intron | 30.0% | |
| !!! | CTACTTCAGATTTTGAGTTA+AGG | + | chr4_1:57046376-57046395 | Msa0558350:CDS | 30.0% |
| !!! | ATTTTGAGTTAAGGCCTTTA+TGG | + | chr4_1:57046385-57046404 | Msa0558350:CDS | 30.0% |
| AAACAACAATGCAAAGATGT+TGG | - | chr4_1:57046434-57046453 | None:intergenic | 30.0% | |
| !!! | TAAGCTAGCTAGTGATTTTT+TGG | + | chr4_1:57046490-57046509 | Msa0558350:intron | 30.0% |
| TAACCTGATATCACATATTC+AGG | - | chr4_1:57046517-57046536 | None:intergenic | 30.0% | |
| CTGCTAAAAAACAAACAAAG+TGG | + | chr4_1:57046788-57046807 | Msa0558350:CDS | 30.0% | |
| TGCAAAAAGATTTCTACATC+CGG | + | chr4_1:57046988-57047007 | Msa0558350:CDS | 30.0% | |
| CAGATATGTTGAGATTGTAA+GGG | + | chr4_1:57047260-57047279 | Msa0558350:intron | 30.0% | |
| TTAACAACATTTCCTTTGTG+GGG | + | chr4_1:57047705-57047724 | Msa0558350:intron | 30.0% | |
| TCTTATACAGGTAAATTCCA+TGG | + | chr4_1:57047857-57047876 | Msa0558350:intron | 30.0% | |
| !! | GTTTTAACCTAGAACCTAAA+TGG | - | chr4_1:57047902-57047921 | None:intergenic | 30.0% |
| !! | GGATTAGTTTGATCTATCAT+CGG | - | chr4_1:57048029-57048048 | None:intergenic | 30.0% |
| ! | GTGAAATCAATGTCATTTCA+GGG | + | chr4_1:57048256-57048275 | Msa0558350:intron | 30.0% |
| ATGTTTCTTGACAAAATCCA+TGG | + | chr4_1:57048448-57048467 | Msa0558350:intron | 30.0% | |
| TGTTTCTTGACAAAATCCAT+GGG | + | chr4_1:57048449-57048468 | Msa0558350:intron | 30.0% | |
| ! | AAATCCATGGGATTTTACTT+CGG | + | chr4_1:57048461-57048480 | Msa0558350:intron | 30.0% |
| AAATACATCATAGTTCCTGA+GGG | - | chr4_1:57048498-57048517 | None:intergenic | 30.0% | |
| AAAATACATCATAGTTCCTG+AGG | - | chr4_1:57048499-57048518 | None:intergenic | 30.0% | |
| TAATGAATAATAAGTGGTCC+CGG | + | chr4_1:57048574-57048593 | Msa0558350:intron | 30.0% | |
| CTTCTAAACGTCATTGAAAA+CGG | - | chr4_1:57048706-57048725 | None:intergenic | 30.0% | |
| TCTTAGTTCATTAACTAACC+TGG | + | chr4_1:57048757-57048776 | Msa0558350:intron | 30.0% | |
| CGTCTTTAATCAGTCTTAAA+TGG | - | chr4_1:57049028-57049047 | None:intergenic | 30.0% | |
| AGTGAATTGAGAATTCACTT+GGG | - | chr4_1:57049183-57049202 | None:intergenic | 30.0% | |
| ATTCAGTCTTCATCACAAAC+TGG | - | chr4_1:57045610-57045629 | None:intergenic | 35.0% | |
| TGAAGTCTATCAAATCATGC+AGG | + | chr4_1:57045649-57045668 | Msa0558350:five_prime_UTR | 35.0% | |
| ATACATGCAACTGCCATAAA+AGG | - | chr4_1:57045867-57045886 | None:intergenic | 35.0% | |
| GTATCAGTATAAGCAAGAAG+AGG | + | chr4_1:57045920-57045939 | Msa0558350:CDS | 35.0% | |
| ! | TAGACAAAAACTGGAGTATC+TGG | + | chr4_1:57046058-57046077 | Msa0558350:CDS | 35.0% |
| TAATGCAAGAATTGCAGAGT+AGG | - | chr4_1:57046236-57046255 | None:intergenic | 35.0% | |
| !! | ACCCATTTTCAAGAGTTGAA+AGG | + | chr4_1:57046330-57046349 | Msa0558350:CDS | 35.0% |
| GCCTTTCAACTCTTGAAAAT+GGG | - | chr4_1:57046334-57046353 | None:intergenic | 35.0% | |
| AGCCTTTCAACTCTTGAAAA+TGG | - | chr4_1:57046335-57046354 | None:intergenic | 35.0% | |
| ! | TTACACAAAGCGTAATTTGC+TGG | + | chr4_1:57046541-57046560 | Msa0558350:CDS | 35.0% |
| !! | CATTGATTTCAGTTTCTCAC+AGG | + | chr4_1:57046679-57046698 | Msa0558350:intron | 35.0% |
| ! | AATCTTTTTGCAAACCACCT+GGG | - | chr4_1:57046980-57046999 | None:intergenic | 35.0% |
| ! | AAATCTTTTTGCAAACCACC+TGG | - | chr4_1:57046981-57047000 | None:intergenic | 35.0% |
| !! | TTACATCTTTCTTTGGGATG+AGG | + | chr4_1:57047030-57047049 | Msa0558350:CDS | 35.0% |
| ! | TTTTCTACACCCTTTCTGAA+GGG | - | chr4_1:57047155-57047174 | None:intergenic | 35.0% |
| ! | TTTTTCTACACCCTTTCTGA+AGG | - | chr4_1:57047156-57047175 | None:intergenic | 35.0% |
| GCAGATATGTTGAGATTGTA+AGG | + | chr4_1:57047259-57047278 | Msa0558350:intron | 35.0% | |
| TTGAGATTGTAAGGGAAGAA+GGG | + | chr4_1:57047268-57047287 | Msa0558350:CDS | 35.0% | |
| TGATGTATCTCTGTCGAATT+TGG | - | chr4_1:57047321-57047340 | None:intergenic | 35.0% | |
| ATAGAATTACAGTCAGAGCT+AGG | + | chr4_1:57047340-57047359 | Msa0558350:CDS | 35.0% | |
| AAGTAAGAAAACTCGAGTGT+AGG | - | chr4_1:57047444-57047463 | None:intergenic | 35.0% | |
| ATCACTTTCATCTGAACACT+TGG | - | chr4_1:57047497-57047516 | None:intergenic | 35.0% | |
| AAGTGTTCAGATGAAAGTGA+TGG | + | chr4_1:57047496-57047515 | Msa0558350:CDS | 35.0% | |
| AGTGTTCAGATGAAAGTGAT+GGG | + | chr4_1:57047497-57047516 | Msa0558350:CDS | 35.0% | |
| AGTATACTAAATCCCCACAA+AGG | - | chr4_1:57047720-57047739 | None:intergenic | 35.0% | |
| TTGTACTTGGCATCTTATAC+AGG | + | chr4_1:57047845-57047864 | Msa0558350:CDS | 35.0% | |
| TCATAACATTTGACAGTCCT+TGG | + | chr4_1:57048170-57048189 | Msa0558350:intron | 35.0% | |
| ! | GGTGAAATCAATGTCATTTC+AGG | + | chr4_1:57048255-57048274 | Msa0558350:intron | 35.0% |
| !! | TATGATTTTGGAGAGAAAGG+AGG | - | chr4_1:57048383-57048402 | None:intergenic | 35.0% |
| ! | AATCCATGGGATTTTACTTC+GGG | + | chr4_1:57048462-57048481 | Msa0558350:intron | 35.0% |
| ! | TTAAAATCTTCAAAGAGCGC+TGG | + | chr4_1:57048966-57048985 | Msa0558350:CDS | 35.0% |
| ATTAAAGACGTGTACGACAA+AGG | + | chr4_1:57049038-57049057 | Msa0558350:exon | 35.0% | |
| GAGTGAATTGAGAATTCACT+TGG | - | chr4_1:57049184-57049203 | None:intergenic | 35.0% | |
| AGTCTATCAAATCATGCAGG+CGG | + | chr4_1:57045652-57045671 | Msa0558350:five_prime_UTR | 40.0% | |
| ! | GATCAAAAGGCTGCCTTTTA+TGG | + | chr4_1:57045851-57045870 | Msa0558350:CDS | 40.0% |
| !! | CTGCTTTGACTTTTCGAACT+TGG | + | chr4_1:57046102-57046121 | Msa0558350:intron | 40.0% |
| GTAGTGTGTATTATACCTCG+TGG | - | chr4_1:57046360-57046379 | None:intergenic | 40.0% | |
| GATCTTGATCGCAACCATAA+AGG | - | chr4_1:57046402-57046421 | None:intergenic | 40.0% | |
| ATGGTTGCGATCAAGATCAA+AGG | + | chr4_1:57046404-57046423 | Msa0558350:CDS | 40.0% | |
| GGTCCTGAATATGTGATATC+AGG | + | chr4_1:57046511-57046530 | Msa0558350:intron | 40.0% | |
| TGTAGATGCTATGGTGCAAA+AGG | + | chr4_1:57046595-57046614 | Msa0558350:CDS | 40.0% | |
| GTTCCATTATGATGCCAATG+TGG | + | chr4_1:57046720-57046739 | Msa0558350:CDS | 40.0% | |
| CATCCACATTGGCATCATAA+TGG | - | chr4_1:57046726-57046745 | None:intergenic | 40.0% | |
| CATTATGATGCCAATGTGGA+TGG | + | chr4_1:57046724-57046743 | Msa0558350:CDS | 40.0% | |
| TGATTTCTGAGTTCTTTCCC+AGG | + | chr4_1:57046960-57046979 | Msa0558350:intron | 40.0% | |
| !! | TCTTTGGGATGAGGATTTAG+AGG | + | chr4_1:57047039-57047058 | Msa0558350:CDS | 40.0% |
| ! | TCGAAAGTTTTTCTCCGTCA+AGG | + | chr4_1:57047062-57047081 | Msa0558350:CDS | 40.0% |
| GTGTGAAAGTCATACCTTGA+CGG | - | chr4_1:57047079-57047098 | None:intergenic | 40.0% | |
| GTTGAGATTGTAAGGGAAGA+AGG | + | chr4_1:57047267-57047286 | Msa0558350:CDS | 40.0% | |
| AAGTTACCTGTGCACTTTCT+TGG | - | chr4_1:57047367-57047386 | None:intergenic | 40.0% | |
| GTAATTAATTACCCGGTGCA+CGG | - | chr4_1:57047526-57047545 | None:intergenic | 40.0% | |
| GTGGGGATTTAGTATACTCT+TGG | + | chr4_1:57047722-57047741 | Msa0558350:intron | 40.0% | |
| !! | AATTTGGGCAGGTTTGTTGA+AGG | + | chr4_1:57047789-57047808 | Msa0558350:intron | 40.0% |
| GATCAGCATGGTATTGTACT+TGG | + | chr4_1:57047832-57047851 | Msa0558350:CDS | 40.0% | |
| TGGGGAATGGATATGAAACT+AGG | + | chr4_1:57048102-57048121 | Msa0558350:CDS | 40.0% | |
| AGAAAACACAATGCACTCCA+AGG | - | chr4_1:57048190-57048209 | None:intergenic | 40.0% | |
| !! | ATGGGATTTTACTTCGGGTT+CGG | + | chr4_1:57048467-57048486 | Msa0558350:intron | 40.0% |
| AATATAGGGGCAATTGCCAA+GGG | - | chr4_1:57048664-57048683 | None:intergenic | 40.0% | |
| AACGTCATTGAAAACGGCAA+GGG | - | chr4_1:57048700-57048719 | None:intergenic | 40.0% | |
| AAACGTCATTGAAAACGGCA+AGG | - | chr4_1:57048701-57048720 | None:intergenic | 40.0% | |
| TTGTTTCCTAATCAGAGACG+CGG | + | chr4_1:57048808-57048827 | Msa0558350:intron | 40.0% | |
| ATGCTTCTGAGCAGATAAGA+AGG | + | chr4_1:57048927-57048946 | Msa0558350:intron | 40.0% | |
| AGATAAGAAGGCAATCAGCA+TGG | + | chr4_1:57048939-57048958 | Msa0558350:intron | 40.0% | |
| GATAAGAAGGCAATCAGCAT+GGG | + | chr4_1:57048940-57048959 | Msa0558350:intron | 40.0% | |
| ! | CTTAACCCAACTTTTGTCCT+CGG | - | chr4_1:57049005-57049024 | None:intergenic | 40.0% |
| TTTGTTCTTTCATGTGGCAG+AGG | + | chr4_1:57049237-57049256 | Msa0558350:three_prime_UTR | 40.0% | |
| AAGAATTGCAGAGTAGGTGG+TGG | - | chr4_1:57046230-57046249 | None:intergenic | 45.0% | |
| TGCAAGAATTGCAGAGTAGG+TGG | - | chr4_1:57046233-57046252 | None:intergenic | 45.0% | |
| ! | ATCACTAGCTAGCTTAGCTC+AGG | - | chr4_1:57046486-57046505 | None:intergenic | 45.0% |
| !! | AATTTGCTGGCTGTTGCAGT+TGG | + | chr4_1:57046554-57046573 | Msa0558350:CDS | 45.0% |
| ATGATGCCAATGTGGATGGA+TGG | + | chr4_1:57046728-57046747 | Msa0558350:CDS | 45.0% | |
| TTTCTGAGTTCTTTCCCAGG+TGG | + | chr4_1:57046963-57046982 | Msa0558350:intron | 45.0% | |
| GATTGTAAGGGAAGAAGGGT+TGG | + | chr4_1:57047272-57047291 | Msa0558350:CDS | 45.0% | |
| GTCGAATTTGGATGAAGAGC+TGG | - | chr4_1:57047309-57047328 | None:intergenic | 45.0% | |
| CATGCTGATCGAGAGAAAAC+GGG | - | chr4_1:57047822-57047841 | None:intergenic | 45.0% | |
| CCATGCTGATCGAGAGAAAA+CGG | - | chr4_1:57047823-57047842 | None:intergenic | 45.0% | |
| TCTCAGAATGACCTTGTCCA+TGG | + | chr4_1:57048078-57048097 | Msa0558350:intron | 45.0% | |
| CTCAGAATGACCTTGTCCAT+GGG | + | chr4_1:57048079-57048098 | Msa0558350:intron | 45.0% | |
| GAAACTAGGATACTGTGCTC+AGG | + | chr4_1:57048116-57048135 | Msa0558350:CDS | 45.0% | |
| CACAAGGCAATACCAACTCT+TGG | + | chr4_1:57048325-57048344 | Msa0558350:CDS | 45.0% | |
| AAGGCAATACCAACTCTTGG+TGG | + | chr4_1:57048328-57048347 | Msa0558350:CDS | 45.0% | |
| GAACCCGAAGTAAAATCCCA+TGG | - | chr4_1:57048468-57048487 | None:intergenic | 45.0% | |
| !! | TGGGATTTTACTTCGGGTTC+GGG | + | chr4_1:57048468-57048487 | Msa0558350:intron | 45.0% |
| TGAATAATAAGTGGTCCCGG+CGG | + | chr4_1:57048577-57048596 | Msa0558350:intron | 45.0% | |
| ATATAGGGGCAATTGCCAAG+GGG | - | chr4_1:57048663-57048682 | None:intergenic | 45.0% | |
| CAATATAGGGGCAATTGCCA+AGG | - | chr4_1:57048665-57048684 | None:intergenic | 45.0% | |
| ACGTCATTGAAAACGGCAAG+GGG | - | chr4_1:57048699-57048718 | None:intergenic | 45.0% | |
| AAAGTGAACGTAAGACTGCC+AGG | - | chr4_1:57048778-57048797 | None:intergenic | 45.0% | |
| CATCACCGAGGACAAAAGTT+GGG | + | chr4_1:57048997-57049016 | Msa0558350:CDS | 45.0% | |
| CTAGCTTCATTCATAGCCCA+TGG | + | chr4_1:57049120-57049139 | Msa0558350:three_prime_UTR | 45.0% | |
| !! | AAAGAAAAAATTTATTAATT+GGG | + | chr4_1:57047226-57047245 | Msa0558350:intron | 5.0% |
| GAGTATCTGGAGAGAGCAAG+AGG | + | chr4_1:57046071-57046090 | Msa0558350:CDS | 50.0% | |
| ATGCCAATGTGGATGGATGG+CGG | + | chr4_1:57046731-57046750 | Msa0558350:CDS | 50.0% | |
| ! | CTAGGACCAAGAAAGTGCAC+AGG | + | chr4_1:57047358-57047377 | Msa0558350:CDS | 50.0% |
| AGACGAGTCTATGAACGCAG+AGG | + | chr4_1:57047466-57047485 | Msa0558350:intron | 50.0% | |
| ATTAATTACCCGGTGCACGG+TGG | - | chr4_1:57047523-57047542 | None:intergenic | 50.0% | |
| !! | GGGCAGGTTTGTTGAAGGTA+TGG | + | chr4_1:57047794-57047813 | Msa0558350:intron | 50.0% |
| ! | CCGTTTTCTCTCGATCAGCA+TGG | + | chr4_1:57047820-57047839 | Msa0558350:CDS | 50.0% |
| AGAATGACCTTGTCCATGGG+TGG | + | chr4_1:57048082-57048101 | Msa0558350:intron | 50.0% | |
| GAATGACCTTGTCCATGGGT+GGG | + | chr4_1:57048083-57048102 | Msa0558350:intron | 50.0% | |
| AATGACCTTGTCCATGGGTG+GGG | + | chr4_1:57048084-57048103 | Msa0558350:CDS | 50.0% | |
| TCATATCCATTCCCCACCCA+TGG | - | chr4_1:57048098-57048117 | None:intergenic | 50.0% | |
| GGAGATCGCAGTCAGAATGT+TGG | + | chr4_1:57048277-57048296 | Msa0558350:CDS | 50.0% | |
| TGACTGCTACCACCAAGAGT+TGG | - | chr4_1:57048340-57048359 | None:intergenic | 50.0% | |
| !! | GGGATTTTACTTCGGGTTCG+GGG | + | chr4_1:57048469-57048488 | Msa0558350:intron | 50.0% |
| GAATAATAAGTGGTCCCGGC+GGG | + | chr4_1:57048578-57048597 | Msa0558350:intron | 50.0% | |
| AATAATAAGTGGTCCCGGCG+GGG | + | chr4_1:57048579-57048598 | Msa0558350:intron | 50.0% | |
| AGCTCAGTTGGTTAGAGCGT+TGG | - | chr4_1:57048634-57048653 | None:intergenic | 50.0% | |
| CGCTCTAACCAACTGAGCTA+CGG | + | chr4_1:57048635-57048654 | Msa0558350:intron | 50.0% | |
| GCTCTAACCAACTGAGCTAC+GGG | + | chr4_1:57048636-57048655 | Msa0558350:intron | 50.0% | |
| TCAGTTCTCGGATCAACTGC+TGG | - | chr4_1:57048841-57048860 | None:intergenic | 50.0% | |
| AGCAGTTGATCCGAGAACTG+AGG | + | chr4_1:57048840-57048859 | Msa0558350:CDS | 50.0% | |
| TTGATCCGAGAACTGAGGTG+AGG | + | chr4_1:57048845-57048864 | Msa0558350:intron | 50.0% | |
| GAAAGCCTCACCTCAGTTCT+CGG | - | chr4_1:57048853-57048872 | None:intergenic | 50.0% | |
| ! | CCAACTTTTGTCCTCGGTGA+TGG | - | chr4_1:57048999-57049018 | None:intergenic | 50.0% |
| CCATCACCGAGGACAAAAGT+TGG | + | chr4_1:57048996-57049015 | Msa0558350:CDS | 50.0% | |
| GAGTTGAAAGGCTTGCCACG+AGG | + | chr4_1:57046342-57046361 | Msa0558350:CDS | 55.0% | |
| TGCCAATGTGGATGGATGGC+GGG | + | chr4_1:57046732-57046751 | Msa0558350:CDS | 55.0% | |
| ATCCCGCCATCCATCCACAT+TGG | - | chr4_1:57046737-57046756 | None:intergenic | 55.0% | |
| !! | ATGGATGGCGGGATCTTGAC+TGG | + | chr4_1:57046743-57046762 | Msa0558350:CDS | 55.0% |
| TCTTATGAGCCGAAGGTCGC+GGG | - | chr4_1:57048611-57048630 | None:intergenic | 55.0% | |
| GTCTTATGAGCCGAAGGTCG+CGG | - | chr4_1:57048612-57048631 | None:intergenic | 55.0% | |
| !! | GCGTTGGTCTTATGAGCCGA+AGG | - | chr4_1:57048618-57048637 | None:intergenic | 55.0% |
| GTTCTCGGATCAACTGCTGG+TGG | - | chr4_1:57048838-57048857 | None:intergenic | 55.0% | |
| CTGGAATCAAGCCATCACCG+AGG | + | chr4_1:57048985-57049004 | Msa0558350:CDS | 55.0% | |
| CCATTCCCCACCCATGGACA+AGG | - | chr4_1:57048092-57048111 | None:intergenic | 60.0% | |
| CCTTGTCCATGGGTGGGGAA+TGG | + | chr4_1:57048089-57048108 | Msa0558350:CDS | 60.0% | |
| AAGGGGTCCCGTAGCTCAGT+TGG | - | chr4_1:57048646-57048665 | None:intergenic | 60.0% | |
| AACTGAGCTACGGGACCCCT+TGG | + | chr4_1:57048645-57048664 | Msa0558350:intron | 60.0% | |
| GGTGAGCCGCGTCTCTGATT+AGG | - | chr4_1:57048817-57048836 | None:intergenic | 60.0% | |
| !! | AGTGATGGGCCACCGTGCAC+CGG | + | chr4_1:57047511-57047530 | Msa0558350:CDS | 65.0% |
| GGGCTTGAACCCGCGACCTT+CGG | + | chr4_1:57048599-57048618 | Msa0558350:intron | 65.0% | |
| !! | GTGATGGGCCACCGTGCACC+GGG | + | chr4_1:57047512-57047531 | Msa0558350:CDS | 70.0% |
| TCGGGTTCGGGGCAACCCTC+AGG | + | chr4_1:57048480-57048499 | Msa0558350:intron | 70.0% | |
| TCGCGGGTTCAAGCCCCGCC+GGG | - | chr4_1:57048595-57048614 | None:intergenic | 75.0% | |
| GTCGCGGGTTCAAGCCCCGC+CGG | - | chr4_1:57048596-57048615 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57045603 | 57049295 | 57045603 | ID=Msa0558350;Name=Msa0558350 |
| chr4_1 | mRNA | 57045603 | 57049295 | 57045603 | ID=Msa0558350-mRNA-1;Parent=Msa0558350;Name=Msa0558350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=100|1|1|1|1|1|14|253|365 |
| chr4_1 | exon | 57045603 | 57045705 | 57045603 | ID=Msa0558350-mRNA-1:exon:17248;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57045834 | 57045941 | 57045834 | ID=Msa0558350-mRNA-1:exon:17249;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57046057 | 57046092 | 57046057 | ID=Msa0558350-mRNA-1:exon:17250;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57046321 | 57046425 | 57046321 | ID=Msa0558350-mRNA-1:exon:17251;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57046533 | 57046616 | 57046533 | ID=Msa0558350-mRNA-1:exon:17252;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57046691 | 57046809 | 57046691 | ID=Msa0558350-mRNA-1:exon:17253;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57046982 | 57047083 | 57046982 | ID=Msa0558350-mRNA-1:exon:17254;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57047263 | 57047379 | 57047263 | ID=Msa0558350-mRNA-1:exon:17255;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57047468 | 57047533 | 57047468 | ID=Msa0558350-mRNA-1:exon:17256;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57047800 | 57047866 | 57047800 | ID=Msa0558350-mRNA-1:exon:17257;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57048084 | 57048137 | 57048084 | ID=Msa0558350-mRNA-1:exon:17258;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57048277 | 57048372 | 57048277 | ID=Msa0558350-mRNA-1:exon:17259;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57048823 | 57048861 | 57048823 | ID=Msa0558350-mRNA-1:exon:17260;Parent=Msa0558350-mRNA-1 |
| chr4_1 | exon | 57048941 | 57049295 | 57048941 | ID=Msa0558350-mRNA-1:exon:17261;Parent=Msa0558350-mRNA-1 |
| chr4_1 | five_prime_UTR | 57045603 | 57045702 | 57045603 | ID=Msa0558350-mRNA-1:five_prime_utr;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57045703 | 57045705 | 57045703 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57045834 | 57045941 | 57045834 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57046057 | 57046092 | 57046057 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57046321 | 57046425 | 57046321 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57046533 | 57046616 | 57046533 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57046691 | 57046809 | 57046691 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57046982 | 57047083 | 57046982 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57047263 | 57047379 | 57047263 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57047468 | 57047533 | 57047468 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57047800 | 57047866 | 57047800 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57048084 | 57048137 | 57048084 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57048277 | 57048372 | 57048277 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57048823 | 57048861 | 57048823 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | CDS | 57048941 | 57049042 | 57048941 | ID=Msa0558350-mRNA-1:cds;Parent=Msa0558350-mRNA-1 |
| chr4_1 | three_prime_UTR | 57049043 | 57049295 | 57049043 | ID=Msa0558350-mRNA-1:three_prime_utr;Parent=Msa0558350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
