AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0559530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559530 MtrunA17_Chr4g0049501 98.963 675 7 0 1 675 1 675 0.0 1353
Msa0559530 MtrunA17_Chr2g0279901 90.490 673 62 2 3 675 6 676 0.0 1217
Msa0559530 MtrunA17_Chr2g0277021 54.588 643 287 3 27 666 45 685 0.0 695
Msa0559530 MtrunA17_Chr8g0388761 53.448 580 244 10 53 614 38 609 0.0 581
Msa0559530 MtrunA17_Chr8g0388671 53.448 580 244 10 53 614 38 609 0.0 579
Msa0559530 MtrunA17_Chr4g0031301 49.298 641 283 12 54 659 10 643 0.0 570
Msa0559530 MtrunA17_Chr4g0031321 48.986 641 285 12 54 659 10 643 0.0 569
Msa0559530 MtrunA17_Chr7g0223291 49.383 648 291 11 54 673 10 648 0.0 568
Msa0559530 MtrunA17_Chr7g0262821 49.373 638 287 11 54 662 10 640 0.0 568
Msa0559530 MtrunA17_Chr7g0223181 50.325 616 273 10 54 643 10 618 0.0 567
Msa0559530 MtrunA17_Chr4g0073741 50.081 621 281 10 54 652 9 622 0.0 567
Msa0559530 MtrunA17_Chr2g0284681 45.258 601 294 12 51 630 6 592 4.84e-165 486
Msa0559530 MtrunA17_Chr7g0223721 46.769 588 285 13 46 613 2 581 3.60e-162 479
Msa0559530 MtrunA17_Chr7g0233311 46.299 581 281 12 54 612 10 581 3.80e-161 477
Msa0559530 MtrunA17_Chr7g0223781 44.020 602 305 11 54 629 10 605 1.03e-160 476
Msa0559530 MtrunA17_Chr7g0223711 45.552 562 276 10 54 595 10 561 2.14e-160 475
Msa0559530 MtrunA17_Chr2g0298851 44.828 580 292 12 54 613 10 581 5.08e-159 471
Msa0559530 MtrunA17_Chr7g0221661 45.675 578 290 11 54 613 10 581 2.56e-157 467
Msa0559530 MtrunA17_Chr8g0350731 44.538 595 291 13 17 595 17 588 6.63e-157 468
Msa0559530 MtrunA17_Chr7g0223851 45.189 582 287 14 54 613 19 590 7.52e-157 466
Msa0559530 MtrunA17_Chr7g0223751 45.161 558 283 11 54 595 10 560 3.95e-156 464
Msa0559530 MtrunA17_Chr6g0462601 44.345 557 289 9 54 595 10 560 6.27e-156 464
Msa0559530 MtrunA17_Chr4g0040931 45.876 582 283 14 54 613 10 581 3.45e-155 462
Msa0559530 MtrunA17_Chr7g0223621 43.486 591 309 12 54 626 10 593 4.27e-154 459
Msa0559530 MtrunA17_Chr2g0293581 44.845 582 290 12 54 613 11 583 7.00e-154 458
Msa0559530 MtrunA17_Chr5g0427901 42.810 612 292 14 54 634 10 594 2.59e-153 457
Msa0559530 MtrunA17_Chr7g0223731 44.624 558 286 10 54 595 10 560 7.94e-152 453
Msa0559530 MtrunA17_Chr7g0225671 46.359 563 269 15 52 593 15 565 9.69e-152 453
Msa0559530 MtrunA17_Chr7g0223741 44.821 560 283 10 54 595 10 561 1.04e-150 449
Msa0559530 MtrunA17_Chr7g0223701 44.092 567 285 13 54 595 10 569 2.91e-149 447
Msa0559530 MtrunA17_Chr7g0223031 45.161 558 283 11 54 595 10 560 3.67e-149 446
Msa0559530 MtrunA17_Chr2g0287631 45.455 583 279 12 54 606 10 583 4.21e-149 446
Msa0559530 MtrunA17_Chr7g0223801 43.067 613 320 15 54 647 10 612 6.72e-149 446
Msa0559530 MtrunA17_Chr6g0462681 43.627 557 293 9 54 595 10 560 2.79e-148 446
Msa0559530 MtrunA17_Chr2g0296391 45.180 529 265 9 54 564 10 531 4.59e-148 441
Msa0559530 MtrunA17_Chr2g0298861 44.167 600 295 17 46 613 2 593 5.56e-148 444
Msa0559530 MtrunA17_Chr7g0248131 44.029 561 288 13 54 595 10 563 5.54e-145 436
Msa0559530 MtrunA17_Chr7g0223631 43.063 555 285 12 54 595 10 546 6.11e-144 432
Msa0559530 MtrunA17_Chr7g0233301 44.563 561 249 14 54 593 10 529 1.29e-142 429
Msa0559530 MtrunA17_Chr7g0223821 46.857 525 244 13 40 544 1 510 3.59e-142 431
Msa0559530 MtrunA17_Chr6g0462641 40.925 562 306 9 54 595 10 565 7.67e-142 429
Msa0559530 MtrunA17_Chr6g0462771 41.459 562 303 9 54 595 10 565 1.01e-141 428
Msa0559530 MtrunA17_Chr6g0462711 41.509 583 310 12 54 612 11 586 2.26e-141 428
Msa0559530 MtrunA17_Chr7g0217971 43.604 555 268 13 54 593 10 534 7.69e-140 421
Msa0559530 MtrunA17_Chr7g0248151 43.828 559 290 12 54 595 10 561 1.21e-138 419
Msa0559530 MtrunA17_Chr4g0012541 42.096 582 296 14 54 613 10 572 1.80e-136 414
Msa0559530 MtrunA17_Chr7g0223831 42.246 561 264 17 54 593 10 531 1.55e-129 395
Msa0559530 MtrunA17_Chr2g0293601 43.478 506 232 8 54 544 10 476 2.06e-129 391
Msa0559530 MtrunA17_Chr7g0223541 44.008 509 262 10 105 595 15 518 1.63e-128 392
Msa0559530 MtrunA17_Chr7g0228281 40.760 579 272 14 54 613 71 597 6.97e-128 392
Msa0559530 MtrunA17_Chr7g0215261 42.115 558 263 14 54 593 10 525 1.69e-127 390
Msa0559530 MtrunA17_Chr6g0462611 42.147 503 273 8 106 595 11 508 2.65e-126 387
Msa0559530 MtrunA17_Chr8g0390821 37.666 677 324 22 40 645 1 650 9.19e-124 382
Msa0559530 MtrunA17_Chr7g0223681 43.949 471 244 8 137 593 5 469 7.74e-121 370
Msa0559530 MtrunA17_Chr2g0331381 39.963 543 240 12 53 578 6 479 1.42e-119 365
Msa0559530 MtrunA17_Chr2g0299921 48.346 393 186 6 43 425 1019 1404 1.18e-104 350
Msa0559530 MtrunA17_Chr2g0299921 47.727 396 187 8 54 436 1414 1802 1.88e-95 323
Msa0559530 MtrunA17_Chr2g0293561 44.792 384 191 7 54 423 10 386 9.17e-104 322
Msa0559530 MtrunA17_Chr2g0299791 46.875 384 187 6 54 427 1043 1419 3.41e-102 340
Msa0559530 MtrunA17_Chr6g0462861 36.313 537 307 12 54 577 10 524 2.00e-101 323
Msa0559530 MtrunA17_Chr2g0299851 46.842 380 189 5 54 425 1039 1413 1.36e-100 336
Msa0559530 MtrunA17_Chr2g0299821 45.407 381 187 7 54 420 10 383 5.58e-98 309
Msa0559530 MtrunA17_Chr2g0299821 50.562 89 36 1 493 573 396 484 9.91e-18 86.7
Msa0559530 MtrunA17_Chr2g0299881 43.508 439 210 12 10 427 998 1419 3.26e-95 321
Msa0559530 MtrunA17_Chr1g0151991 50.182 275 125 5 54 317 10 283 4.47e-86 271
Msa0559530 MtrunA17_Chr7g0245521 48.864 264 123 4 54 306 10 272 4.01e-79 253
Msa0559530 MtrunA17_Chr1g0166551 33.737 578 251 19 52 613 4 465 2.47e-76 253
Msa0559530 MtrunA17_Chr2g0293271 35.616 438 198 8 65 491 45 409 1.29e-72 240
Msa0559530 MtrunA17_Chr5g0394391 29.358 545 313 12 29 529 5 521 1.08e-69 237
Msa0559530 MtrunA17_Chr3g0098761 33.990 406 251 6 53 446 3 403 1.16e-67 236
Msa0559530 MtrunA17_Chr4g0004331 32.598 408 258 5 53 448 3 405 4.32e-66 233
Msa0559530 MtrunA17_Chr5g0444001 31.640 433 270 7 53 466 3 428 4.79e-64 221
Msa0559530 MtrunA17_Chr2g0331901 31.683 404 259 6 53 444 3 401 2.74e-63 225
Msa0559530 MtrunA17_Chr7g0245531 44.922 256 135 4 343 593 2 256 8.65e-63 211
Msa0559530 MtrunA17_Chr7g0223671 52.151 186 80 2 119 295 10 195 1.31e-58 196
Msa0559530 MtrunA17_Chr1g0188601 50.532 188 84 2 135 313 1 188 1.56e-55 187
Msa0559530 MtrunA17_Chr6g0462791 51.807 166 76 1 156 317 10 175 2.25e-51 176
Msa0559530 MtrunA17_Chr6g0462751 33.333 357 159 11 107 446 9 303 3.98e-51 180
Msa0559530 MtrunA17_Chr6g0462631 37.500 304 136 6 156 450 39 297 7.08e-51 178
Msa0559530 MtrunA17_Chr4g0060241 29.771 524 316 15 38 531 5 506 2.17e-50 184
Msa0559530 MtrunA17_Chr1g0152001 41.313 259 138 9 364 613 12 265 2.51e-49 175
Msa0559530 MtrunA17_Chr4g0064621 30.361 527 324 12 48 540 135 652 9.51e-49 182
Msa0559530 MtrunA17_Chr7g0223761 34.758 351 166 9 275 613 3 302 2.09e-47 171
Msa0559530 MtrunA17_Chr4g0046881 51.634 153 63 2 156 303 2 148 1.25e-45 159
Msa0559530 MtrunA17_Chr7g0223771 52.667 150 62 2 139 279 4 153 1.18e-43 154
Msa0559530 MtrunA17_Chr1g0188611 43.600 250 124 7 365 602 6 250 8.81e-43 156
Msa0559530 MtrunA17_Chr5g0442171 31.231 333 198 7 209 523 1 320 3.75e-41 152
Msa0559530 MtrunA17_Chr3g0120101 29.017 417 263 11 40 430 15 424 3.97e-38 152
Msa0559530 MtrunA17_Chr7g0223861 51.145 131 55 3 121 242 4 134 1.04e-35 131
Msa0559530 MtrunA17_Chr5g0394221 31.381 239 159 5 339 573 71 308 5.85e-32 127
Msa0559530 MtrunA17_Chr7g0245541 46.099 141 74 2 454 593 4 143 6.24e-31 120
Msa0559530 MtrunA17_Chr6g0462701 40.909 154 62 3 156 304 39 168 2.29e-29 114
Msa0559530 MtrunA17_Chr6g0462691 45.588 136 69 2 364 494 5 140 7.36e-29 112
Msa0559530 MtrunA17_Chr4g0046871 49.495 99 46 2 377 471 9 107 3.28e-23 94.7
Msa0559530 MtrunA17_Chr4g0064651 45.652 92 50 0 432 523 30 121 4.03e-19 84.0
Msa0559530 MtrunA17_Chr5g0394231 29.493 217 95 6 119 326 7 174 1.04e-18 84.7
Msa0559530 MtrunA17_Chr6g0481391 32.520 123 75 2 80 198 13 131 1.22e-17 79.7
Msa0559530 MtrunA17_Chr2g0284661 52.381 84 36 2 404 483 60 143 1.27e-17 80.1
Msa0559530 MtrunA17_Chr6g0481381 52.703 74 30 1 215 283 1 74 2.62e-15 74.7
Msa0559530 MtrunA17_Chr7g0223691 56.061 66 26 2 54 117 10 74 2.35e-14 68.6
Msa0559530 MtrunA17_Chr6g0462621 50.000 64 31 1 54 117 10 72 1.02e-13 66.6
Msa0559530 MtrunA17_Chr1g0188591 50.000 66 30 2 54 117 10 74 3.29e-13 65.9
Msa0559530 MtrunA17_Chr2g0299941 60.000 55 22 0 433 487 23 77 1.55e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559530 AT5G09590.1 83.505 679 107 2 2 675 4 682 0.0 1143
Msa0559530 AT4G37910.1 82.318 673 115 2 3 672 5 676 0.0 1092
Msa0559530 AT4G37910.2 82.318 673 115 2 3 672 5 676 0.0 1092
Msa0559530 AT4G24280.1 57.711 603 248 4 47 645 74 673 0.0 692
Msa0559530 AT5G49910.1 56.613 620 262 4 47 663 74 689 0.0 692
Msa0559530 AT5G42020.1 54.301 558 232 9 53 595 37 586 0.0 581
Msa0559530 AT5G42020.3 50.949 632 273 13 53 662 42 658 0.0 581
Msa0559530 AT5G28540.1 54.301 558 232 9 53 595 37 586 0.0 579
Msa0559530 AT5G02500.1 50.489 614 275 10 54 643 10 618 0.0 569
Msa0559530 AT3G12580.1 49.525 632 283 12 54 661 10 629 0.0 566
Msa0559530 AT3G09440.1 51.903 578 252 9 54 612 10 580 0.0 562
Msa0559530 AT3G09440.4 51.903 578 252 9 54 612 10 580 0.0 562
Msa0559530 AT3G09440.2 51.903 578 252 9 54 612 10 580 0.0 562
Msa0559530 AT3G09440.3 51.903 578 252 9 54 612 10 580 0.0 562
Msa0559530 AT1G16030.1 48.738 634 289 11 54 663 9 630 0.0 561
Msa0559530 AT1G56410.1 49.431 615 284 10 54 648 10 617 0.0 561
Msa0559530 AT5G02490.1 48.860 614 285 10 54 643 10 618 0.0 560
Msa0559530 AT1G09080.2 52.900 569 245 10 53 607 42 601 0.0 555
Msa0559530 AT1G09080.1 52.900 569 245 10 53 607 52 611 0.0 555
Msa0559530 AT5G42020.2 55.967 486 191 9 53 523 37 514 3.71e-177 518
Msa0559530 AT5G02500.2 50.895 391 177 6 54 434 10 395 3.44e-124 379
Msa0559530 AT1G79930.2 32.274 409 260 5 53 449 3 406 5.55e-67 235
Msa0559530 AT1G79930.1 32.274 409 260 5 53 449 3 406 7.83e-67 235
Msa0559530 AT1G79920.3 32.029 409 261 5 53 449 3 406 8.71e-67 233
Msa0559530 AT1G79920.2 32.029 409 261 5 53 449 3 406 8.71e-67 233
Msa0559530 AT1G79920.4 32.029 409 261 5 53 449 3 406 8.71e-67 233
Msa0559530 AT1G79920.1 32.029 409 261 5 53 449 3 406 1.09e-66 233
Msa0559530 AT2G32120.1 30.502 518 304 12 45 531 21 513 8.62e-66 227
Msa0559530 AT2G32120.2 30.502 518 304 12 45 531 21 513 8.62e-66 227
Msa0559530 AT1G11660.4 31.220 410 264 5 53 449 3 407 6.46e-62 220
Msa0559530 AT1G11660.3 31.220 410 264 5 53 449 3 407 6.46e-62 220
Msa0559530 AT1G11660.1 31.220 410 264 5 53 449 3 407 6.46e-62 220
Msa0559530 AT1G11660.2 31.467 375 239 5 88 449 1 370 9.28e-55 200
Msa0559530 AT4G16660.1 27.571 457 291 11 48 469 21 472 2.26e-42 165
Msa0559530 AT4G16660.2 27.571 457 291 11 48 469 45 496 2.66e-42 165
Msa0559530 AT4G32208.1 69.444 108 32 1 569 675 46 153 9.75e-36 132

Find 198 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCATGTGTTTCTTTAA+TGG 0.139612 4_1:-58709602 Msa0559530:CDS
CAACAAGCAGCTCTCCTTTC+TGG 0.152574 4_1:+58709425 None:intergenic
CAAGTTTGGCTCGACCTTTC+AGG 0.154885 4_1:-58709760 Msa0559530:intron
ACCGTTTGAAATTTCTAAAA+TGG 0.216877 4_1:+58708952 None:intergenic
TGCAATGGGAGCAGCTCTTC+AGG 0.222059 4_1:-58708368 Msa0559530:CDS
GGGTGCCTTGACAATCTTAT+AGG 0.230055 4_1:+58709285 None:intergenic
TTTGGCTGTGAAGTGAAATT+AGG 0.232878 4_1:+58710542 None:intergenic
TCAGAATTCTCAATAACTTT+AGG 0.250981 4_1:+58709484 None:intergenic
ATCTTTCAAGCAGCTCTTAC+AGG 0.256743 4_1:+58708525 None:intergenic
TAAGAACAAAAGCACCAATT+TGG 0.281100 4_1:+58709215 None:intergenic
GTGAAGTGAAATTAGGGTTT+AGG 0.284191 4_1:+58710549 None:intergenic
AGCTCAAAAGTGGGCAAGTT+TGG 0.290535 4_1:-58709774 Msa0559530:CDS
GAAATTAGGGTTTAGGGTTT+TGG 0.297029 4_1:+58710556 None:intergenic
TGTGCGGTTGTAATAATATA+GGG 0.304897 4_1:+58710602 None:intergenic
GAAACCACCTCCTGCACTTT+AGG 0.305254 4_1:+58708442 None:intergenic
TAGATCGAAGTTTGAGGCTT+TGG 0.315791 4_1:-58708578 Msa0559530:CDS
AAAGAGTTTGAGCGAGTATA+GGG 0.317690 4_1:-58707209 Msa0559530:CDS
TGATGTTATTGGAATTGATT+TGG 0.319512 4_1:-58709632 Msa0559530:CDS
TGAAGTGAAATTAGGGTTTA+GGG 0.320670 4_1:+58710550 None:intergenic
TACCAATGGTGACACTTTCT+TGG 0.320696 4_1:-58708821 Msa0559530:CDS
ATGTGCGGTTGTAATAATAT+AGG 0.321543 4_1:+58710601 None:intergenic
TCCAACAGTACGACAAAATA+AGG 0.346294 4_1:+58706864 None:intergenic
AAAAGAGTTTGAGCGAGTAT+AGG 0.348496 4_1:-58707210 Msa0559530:CDS
ACTGCAGCTGCACTTTCATA+TGG 0.352369 4_1:-58709037 Msa0559530:CDS
CAATCTGAGGCAAACCTCTT+GGG 0.354482 4_1:+58707455 None:intergenic
ATCCCTGGGTATTGAGACTT+TGG 0.357413 4_1:-58708290 Msa0559530:CDS
CTTGGAGAATTTGACCTTGT+TGG 0.357711 4_1:-58707490 Msa0559530:CDS
AGATGATGAAATTAATAATA+TGG 0.357883 4_1:-58707326 Msa0559530:CDS
AAAGATGCTGGTAGAATTGC+CGG 0.362237 4_1:-58709091 Msa0559530:CDS
TCCTCTGATGGAGGTTCTCC+AGG 0.365670 4_1:-58707022 Msa0559530:CDS
CAATATTCTCCCAGCCAAAT+TGG 0.366163 4_1:-58709229 Msa0559530:CDS
GAGGTGGTTTCAGAGATCTT+TGG 0.369528 4_1:-58708430 Msa0559530:CDS
AACACAAAAGGAGATGAAAA+TGG 0.372682 4_1:-58709311 Msa0559530:CDS
GATGTTATTGGAATTGATTT+GGG 0.373282 4_1:-58709631 Msa0559530:CDS
TTCTCCAGGTGGTGGTGAAC+AGG 0.375092 4_1:-58707008 Msa0559530:CDS
CCTGCTGGTAGTGATGTTAT+TGG 0.376880 4_1:-58709643 Msa0559530:CDS
GGTGCCTTGACAATCTTATA+GGG 0.378876 4_1:+58709286 None:intergenic
TTGGCTGTGAAGTGAAATTA+GGG 0.383544 4_1:+58710543 None:intergenic
TCCCTGGGTATTGAGACTTT+GGG 0.389902 4_1:-58708289 Msa0559530:CDS
GTGCCTTTGTCCTTTCAATC+AGG 0.391952 4_1:+58708548 None:intergenic
CAGCTCTCCTTTCTGGTTGA+AGG 0.397732 4_1:+58709432 None:intergenic
TGTCGGAATTGTTGTGTTGC+GGG 0.399245 4_1:+58708243 None:intergenic
CATTAAAGAAACACATGAAT+TGG 0.405929 4_1:+58709603 None:intergenic
ACCTCTTCATACTCTGCCTC+TGG 0.409681 4_1:+58706983 None:intergenic
ATTACCTGACTCTTCTTTGT+CGG 0.416894 4_1:+58708226 None:intergenic
CAGCCATTTCACGCTCCCCT+TGG 0.422244 4_1:+58707527 None:intergenic
CAGATTACCATCCGCTCATC+AGG 0.424767 4_1:-58707358 Msa0559530:CDS
GGGATAGAGGAGTGACATCT+AGG 0.427451 4_1:+58708308 None:intergenic
CAAGATCGCGGCGGAGAGCA+CGG 0.429764 4_1:+58710452 None:intergenic
AGATGTCACTCCTCTATCCC+TGG 0.430112 4_1:-58708305 Msa0559530:CDS
ACCAATGGTGACACTTTCTT+GGG 0.432955 4_1:-58708820 Msa0559530:CDS
TCAATCTGAGGCAAACCTCT+TGG 0.435495 4_1:+58707454 None:intergenic
GCTCCAAGGGGAGCGTGAAA+TGG 0.435720 4_1:-58707530 Msa0559530:CDS
CCCATTGCAACAGCCTCATC+AGG 0.435835 4_1:+58708382 None:intergenic
TTTGGCACCAAACGTTTGAT+TGG 0.438874 4_1:-58709355 Msa0559530:CDS
GCACCAAACGTTTGATTGGT+AGG 0.443834 4_1:-58709351 Msa0559530:CDS
AACAAAAGCACCAATTTGGC+TGG 0.450750 4_1:+58709219 None:intergenic
AACAAAGCCGTGTCAAAGAT+TGG 0.451841 4_1:-58707076 Msa0559530:CDS
CTCTGTCTCTGCCTTTCGAT+CGG 0.453056 4_1:-58710422 Msa0559530:intron
TTCATCACTGCTGATGCATC+CGG 0.456355 4_1:-58708628 Msa0559530:CDS
TTCAACCCATGCATCTCCAT+TGG 0.460739 4_1:+58709264 None:intergenic
TCAACCCATGCATCTCCATT+GGG 0.462137 4_1:+58709265 None:intergenic
GCGCCTACCAATCAAACGTT+TGG 0.472555 4_1:+58709348 None:intergenic
GTTAAACTTTCGTCGGAGAA+AGG 0.475478 4_1:-58706695 Msa0559530:three_prime_UTR
ATTTCCTTCGCAACCTCACT+AGG 0.475574 4_1:+58707178 None:intergenic
CAGAAAGGAGAGCTGCTTGT+TGG 0.476199 4_1:-58709424 Msa0559530:CDS
GTTGACTAGATCGAAGTTTG+AGG 0.481396 4_1:-58708584 Msa0559530:CDS
AACATCCTTGATAGATATGT+TGG 0.482621 4_1:+58708501 None:intergenic
TGGTACACCTGCCAAGCGTC+AGG 0.482660 4_1:-58709404 Msa0559530:CDS
AATTTCAAACGGTGTATTTG+AGG 0.485239 4_1:-58708942 Msa0559530:intron
TCAAGTGGAGGTTCCTCTGA+TGG 0.485714 4_1:-58707034 Msa0559530:CDS
GTCTCAATACCCAGGGATAG+AGG 0.485922 4_1:+58708295 None:intergenic
TACTACAGTTCTAGGCCTGC+TGG 0.490672 4_1:-58709658 Msa0559530:intron
CTGCAGCTGCACTTTCATAT+GGG 0.491179 4_1:-58709036 Msa0559530:CDS
GCAATGGGAGCAGCTCTTCA+GGG 0.497054 4_1:-58708367 Msa0559530:CDS
GTTACAGCCTGACGCTTGGC+AGG 0.501358 4_1:+58709397 None:intergenic
CTTCAATGATGCTCAGAGGC+AGG 0.501906 4_1:-58709119 Msa0559530:CDS
TGCTGAAAGTTATCTACCAT+TGG 0.509311 4_1:-58706769 Msa0559530:three_prime_UTR
AGATGCCAACATATCTATCA+AGG 0.510131 4_1:-58708506 Msa0559530:CDS
CTCAGATTTGAGAACGGCTA+TGG 0.512317 4_1:-58707143 Msa0559530:CDS
TGATGATCCGCAAACACAAA+AGG 0.515016 4_1:-58709323 Msa0559530:CDS
TGAGGCAAACCTCTTGGGGC+AGG 0.516215 4_1:+58707460 None:intergenic
AAGATTGGTCAGCATATGTC+AGG 0.517534 4_1:-58707061 Msa0559530:CDS
TGAGCATCATTGAAGTAAGC+TGG 0.518266 4_1:+58709127 None:intergenic
TGGTAAATAACCTGATTGAA+AGG 0.518643 4_1:-58708558 Msa0559530:CDS
GAGAGCACGGCGCAAGACGG+CGG 0.518714 4_1:+58710465 None:intergenic
TGTTTCTTTAATGGAGGGAA+AGG 0.519248 4_1:-58709593 Msa0559530:intron
TCAGGATTTACTCCTTTGCT+AGG 0.519309 4_1:+58708400 None:intergenic
CATTTGACATAGATGCCAAT+GGG 0.519858 4_1:-58707426 Msa0559530:CDS
GCGGAGAGCACGGCGCAAGA+CGG 0.519906 4_1:+58710462 None:intergenic
TCATGTGTTTCTTTAATGGA+GGG 0.521862 4_1:-58709598 Msa0559530:CDS
GCTGCAGACAACAAGAGTCT+TGG 0.523262 4_1:-58707508 Msa0559530:CDS
TTCATGTGTTTCTTTAATGG+AGG 0.523829 4_1:-58709599 Msa0559530:CDS
TCAGACTCAAGTGGGTATCA+AGG 0.524218 4_1:-58707554 Msa0559530:CDS
ATGAGGTTCTTCTCGTCGGA+GGG 0.525590 4_1:-58708477 Msa0559530:CDS
GAAACTGCTGAGGCATACCT+TGG 0.527311 4_1:-58709181 Msa0559530:CDS
CATCATATGCAGCTCAAAAG+TGG 0.528387 4_1:-58709784 Msa0559530:CDS
AATTCCGACAAAGAAGAGTC+AGG 0.529231 4_1:-58708230 Msa0559530:intron
TCCTGATGAGGCTGTTGCAA+TGG 0.529665 4_1:-58708383 Msa0559530:CDS
TTGTCGGAATTGTTGTGTTG+CGG 0.529946 4_1:+58708242 None:intergenic
GTTGCATGCTCAGAGAGATC+AGG 0.532569 4_1:-58707290 Msa0559530:CDS
GACTCGTGTACCTAAAGTGC+AGG 0.535807 4_1:-58708452 Msa0559530:CDS
CCTGATGAGGCTGTTGCAAT+GGG 0.536816 4_1:-58708382 Msa0559530:CDS
TATGGGATGAACAGCAAAGA+GGG 0.537258 4_1:-58709019 Msa0559530:CDS
TGGGTATCAAGGTGCTCCAA+GGG 0.538510 4_1:-58707543 Msa0559530:CDS
GATGTCACTCCTCTATCCCT+GGG 0.540459 4_1:-58708304 Msa0559530:CDS
GGCAAACCTCTTGGGGCAGG+AGG 0.540636 4_1:+58707463 None:intergenic
AGACGGCGGCCATAGTGAAT+CGG 0.542065 4_1:+58710479 None:intergenic
AAAGTTATTGAGAATTCTGA+AGG 0.542496 4_1:-58709481 Msa0559530:CDS
CTGGGTATTGAGACTTTGGG+TGG 0.543172 4_1:-58708286 Msa0559530:CDS
AATTCTCAGCACTTCAAGAC+CGG 0.543184 4_1:+58709072 None:intergenic
GATTTGAGAACGGCTATGGC+AGG 0.546663 4_1:-58707139 Msa0559530:CDS
GTTGGTTACAGCCTGACGCT+TGG 0.547556 4_1:+58709393 None:intergenic
GGCACCCAATGGAGATGCAT+GGG 0.549734 4_1:-58709269 Msa0559530:CDS
GATGGAGGTTCTCCAGGTGG+TGG 0.550859 4_1:-58707016 Msa0559530:CDS
TTGAGAATTCTGAAGGAGCT+CGG 0.556650 4_1:-58709474 Msa0559530:CDS
GGAGCCTGTTCACCACCACC+TGG 0.557888 4_1:+58707004 None:intergenic
GTTGATGAGGTTCTTCTCGT+CGG 0.558124 4_1:-58708481 Msa0559530:CDS
ATCATATGCAGCTCAAAAGT+GGG 0.564862 4_1:-58709783 Msa0559530:CDS
CATATGTCAGGTGGGTCAAG+TGG 0.568288 4_1:-58707049 Msa0559530:CDS
TCTTTCAAGCAGCTCTTACA+GGG 0.569460 4_1:+58708526 None:intergenic
TCTGCCAAAGACAAATCCAC+TGG 0.570529 4_1:-58707391 Msa0559530:CDS
GTGGGTATCAAGGTGCTCCA+AGG 0.570815 4_1:-58707544 Msa0559530:CDS
GATGAGGTTCTTCTCGTCGG+AGG 0.572161 4_1:-58708478 Msa0559530:CDS
GATATTCAAATGCTTTGCAC+CGG 0.572709 4_1:+58708609 None:intergenic
GGCATTCCTCCTGCCCCAAG+AGG 0.573254 4_1:-58707469 Msa0559530:CDS
CGGTTGTAATAATATAGGGG+TGG 0.574813 4_1:+58710606 None:intergenic
AATCTGAGGCAAACCTCTTG+GGG 0.574961 4_1:+58707456 None:intergenic
ATATGAAAGTGCAGCTGCAG+TGG 0.575044 4_1:+58709039 None:intergenic
AGGCACCCAATGGAGATGCA+TGG 0.577576 4_1:-58709270 Msa0559530:CDS
AGGATAAGCTTGCGTTGCAG+AGG 0.578244 4_1:-58708720 Msa0559530:CDS
GGCAAAACAAAGCACCTGAA+AGG 0.578986 4_1:+58709746 None:intergenic
AGTTATCTACCATTGGTTGG+TGG 0.579146 4_1:-58706762 Msa0559530:three_prime_UTR
AGGCAGGCAACAAAAGATGC+TGG 0.579182 4_1:-58709103 Msa0559530:CDS
TCCCAAGAAAGTGTCACCAT+TGG 0.580142 4_1:+58708819 None:intergenic
GATTCCTAGTGAGGTTGCGA+AGG 0.581066 4_1:-58707182 Msa0559530:CDS
AATCGAGTAGATTGATGTGT+CGG 0.581607 4_1:+58707234 None:intergenic
TGGTGGTGAACAGGCTCCAG+AGG 0.582066 4_1:-58706999 Msa0559530:CDS
ACATTTGACATAGATGCCAA+TGG 0.582385 4_1:-58707427 Msa0559530:CDS
TGGTTGAAGGCAACCACTGA+TGG 0.582430 4_1:+58709445 None:intergenic
AATGGTGACACTTTCTTGGG+AGG 0.584699 4_1:-58708817 Msa0559530:CDS
CATCAGCAGTGATGAAAGGA+AGG 0.584878 4_1:+58708635 None:intergenic
ACAAAAGCACCAATTTGGCT+GGG 0.595143 4_1:+58709220 None:intergenic
ATCTATCAAGGATGTTGATG+AGG 0.595284 4_1:-58708494 Msa0559530:CDS
TGTACCTAAAGTGCAGGAGG+TGG 0.596493 4_1:-58708446 Msa0559530:CDS
GTGGTTGCCTTCAACCAGAA+AGG 0.597350 4_1:-58709439 Msa0559530:CDS
GATGCATCAGCAGTGATGAA+AGG 0.598218 4_1:+58708631 None:intergenic
CGATCGAAAGGCAGAGACAG+AGG 0.598907 4_1:+58710423 None:intergenic
GTGCGGTTGTAATAATATAG+GGG 0.600163 4_1:+58710603 None:intergenic
AGCTCGGACAACACCATCAG+TGG 0.601686 4_1:-58709458 Msa0559530:CDS
TATGAAAGTGCAGCTGCAGT+GGG 0.601744 4_1:+58709040 None:intergenic
AAGATTGTCAAGGCACCCAA+TGG 0.601896 4_1:-58709280 Msa0559530:CDS
GAAAGTTATCTACCATTGGT+TGG 0.603185 4_1:-58706765 Msa0559530:three_prime_UTR
CACCCAAAGTCTCAATACCC+AGG 0.604506 4_1:+58708287 None:intergenic
ACCTGGAGAACCTCCATCAG+AGG 0.605516 4_1:+58707021 None:intergenic
CCAATAACATCACTACCAGC+AGG 0.608458 4_1:+58709643 None:intergenic
GGGCAGGAGGAATGCCAACA+AGG 0.608917 4_1:+58707476 None:intergenic
TGCGAAGGAAATTGAAGATG+CGG 0.608991 4_1:-58707167 Msa0559530:CDS
ATTGGTCAGCATATGTCAGG+TGG 0.609221 4_1:-58707058 Msa0559530:CDS
AGAGACAGTAACAATCCCAT+TGG 0.610713 4_1:+58707411 None:intergenic
GGTTGTAATAATATAGGGGT+GGG 0.611072 4_1:+58710607 None:intergenic
ATAGAGATTTACCGATCGAA+AGG 0.613056 4_1:+58710411 None:intergenic
GAGTCCTCCTGATGAGCGGA+TGG 0.614772 4_1:+58707351 None:intergenic
TTTCAGGTGAAAGCTACCAA+TGG 0.616098 4_1:-58708835 Msa0559530:intron
AGTGGAGGTTCCTCTGATGG+AGG 0.616462 4_1:-58707031 Msa0559530:CDS
ATATATTAACCACCAACCAA+TGG 0.616768 4_1:+58706753 None:intergenic
AGCTGACAATCAGACTCAAG+TGG 0.624033 4_1:-58707563 Msa0559530:CDS
ATGTCAGGTGGGTCAAGTGG+AGG 0.625917 4_1:-58707046 Msa0559530:CDS
ATGCTGACCAATCTTTGACA+CGG 0.628232 4_1:+58707069 None:intergenic
ACCCAAAGTCTCAATACCCA+GGG 0.628381 4_1:+58708288 None:intergenic
CTGAGAGTCCTCCTGATGAG+CGG 0.628649 4_1:+58707347 None:intergenic
TAGGGAAAAGATTCCTAGTG+AGG 0.630551 4_1:-58707191 Msa0559530:CDS
ATTACCATCCGCTCATCAGG+AGG 0.634993 4_1:-58707355 Msa0559530:CDS
CAGAGGAAGAAGCAAGATCG+CGG 0.635260 4_1:+58710440 None:intergenic
TGATAGTATTGATCTTGCAA+AGG 0.635285 4_1:-58708740 Msa0559530:CDS
TCTGATGGAGGTTCTCCAGG+TGG 0.636312 4_1:-58707019 Msa0559530:CDS
TCCAGAGGCAGAGTATGAAG+AGG 0.637119 4_1:-58706984 Msa0559530:CDS
TTGGTCAGCATATGTCAGGT+GGG 0.640684 4_1:-58707057 Msa0559530:CDS
GCTGACAATCAGACTCAAGT+GGG 0.641874 4_1:-58707562 Msa0559530:CDS
TAAGATGAAGGAAACTGCTG+AGG 0.643269 4_1:-58709191 Msa0559530:CDS
TCAAATGTGACTTCAATCTG+AGG 0.646753 4_1:+58707442 None:intergenic
ATGTTATTGGAATTGATTTG+GGG 0.649149 4_1:-58709630 Msa0559530:CDS
ATGCTCAGAGAGATCAGGAA+AGG 0.649172 4_1:-58707285 Msa0559530:CDS
CAAAGGAGTAAATCCTGATG+AGG 0.650174 4_1:-58708395 Msa0559530:CDS
TGCGGTCTCAGATTTGAGAA+CGG 0.650827 4_1:-58707149 Msa0559530:CDS
TTTGGAAAGAGTCCTAGCAA+AGG 0.662243 4_1:-58708412 Msa0559530:CDS
TAACCTGATTGAAAGGACAA+AGG 0.662910 4_1:-58708551 Msa0559530:CDS
GGTACCCTATAAGATTGTCA+AGG 0.671230 4_1:-58709290 Msa0559530:CDS
TCGTGTACCTAAAGTGCAGG+AGG 0.674141 4_1:-58708449 Msa0559530:CDS
ATATGGGATGAACAGCAAAG+AGG 0.685497 4_1:-58709020 Msa0559530:CDS
CTTCAGGGTGGTATTCTCCG+TGG 0.686079 4_1:-58708352 Msa0559530:CDS
ATGGGATGAACAGCAAAGAG+GGG 0.688004 4_1:-58709018 Msa0559530:CDS
AGGAAGAAGCAAGATCGCGG+CGG 0.707753 4_1:+58710443 None:intergenic
GGGTATCAAGGTGCTCCAAG+GGG 0.712553 4_1:-58707542 Msa0559530:CDS
CTTACTTCAATGATGCTCAG+AGG 0.714640 4_1:-58709123 Msa0559530:CDS
ATGGGAGCAGCTCTTCAGGG+TGG 0.716807 4_1:-58708364 Msa0559530:CDS
GCAGCTCTTTAACATCACCA+CGG 0.761484 4_1:+58708335 None:intergenic
GAATGAGGTTATGAAATGTG+CGG 0.775661 4_1:+58710586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTATTTTTTAGTAAA+AGG - chr4_1:58710355-58710374 Msa0559530:intron 10.0%
!! AAAATTATGAAAAATTAGAC+TGG + chr4_1:58707263-58707282 None:intergenic 15.0%
!! ATTATTATGAAAAATTAGAC+TGG + chr4_1:58707306-58707325 None:intergenic 15.0%
!!! TTTTTCTTAAAAACAGTTTT+TGG + chr4_1:58709286-58709305 None:intergenic 15.0%
!! TACATTAAATAAATCTGAAT+AGG + chr4_1:58709611-58709630 None:intergenic 15.0%
!! AGATGATGAAATTAATAATA+TGG - chr4_1:58709918-58709937 Msa0559530:intron 15.0%
!!! ATATTATTTTGCAATTTGAT+TGG - chr4_1:58710510-58710529 Msa0559530:five_prime_UTR 15.0%
!! AATAATAACTGTTGATATCA+TGG - chr4_1:58707320-58707339 Msa0559530:CDS 20.0%
!!! TCCATTTTAGAAATTTCAAA+CGG - chr4_1:58708291-58708310 Msa0559530:CDS 20.0%
!! ACATAATTATTCCTAATGAT+AGG + chr4_1:58708367-58708386 None:intergenic 20.0%
!! ATTAGGAATAATTATGTAAG+TGG - chr4_1:58708370-58708389 Msa0559530:CDS 20.0%
!! ATTTAAAAACAAAATCTGCT+TGG - chr4_1:58709306-58709325 Msa0559530:CDS 20.0%
!!! TTCAAAAACTGATTTTGAAA+AGG - chr4_1:58709431-58709450 Msa0559530:CDS 20.0%
!! TCAGATTTATTTAATGTAAC+AGG - chr4_1:58709613-58709632 Msa0559530:CDS 20.0%
!!! AATTTTGAAATCATTGTTTC+AGG - chr4_1:58709645-58709664 Msa0559530:CDS 20.0%
!!! CAAATTTTGATGATGTTATT+CGG + chr4_1:58710423-58710442 None:intergenic 20.0%
!!! TATTTTTGTTAAACTTTCGT+CGG - chr4_1:58710542-58710561 Msa0559530:five_prime_UTR 20.0%
!! TTTAACAGCAAAAAAATACA+AGG + chr4_1:58710590-58710609 None:intergenic 20.0%
! TGATGTTATTGGAATTGATT+TGG - chr4_1:58707612-58707631 Msa0559530:intron 25.0%
!! GATGTTATTGGAATTGATTT+GGG - chr4_1:58707613-58707632 Msa0559530:intron 25.0%
!!! ATGTTATTGGAATTGATTTG+GGG - chr4_1:58707614-58707633 Msa0559530:intron 25.0%
! CATTAAAGAAACACATGAAT+TGG + chr4_1:58707644-58707663 None:intergenic 25.0%
! CAATTCATGTGTTTCTTTAA+TGG - chr4_1:58707642-58707661 Msa0559530:intron 25.0%
!!! CTATTTCTCTTGATTACTTT+TGG - chr4_1:58707681-58707700 Msa0559530:intron 25.0%
!!! ATTACTTTTGGACATGTTTT+TGG - chr4_1:58707693-58707712 Msa0559530:intron 25.0%
!!! TAACTTTAGGATTCTGAAAA+GGG + chr4_1:58707750-58707769 None:intergenic 25.0%
!!! ATAACTTTAGGATTCTGAAA+AGG + chr4_1:58707751-58707770 None:intergenic 25.0%
! TCAGAATTCTCAATAACTTT+AGG + chr4_1:58707763-58707782 None:intergenic 25.0%
! AAAGTTATTGAGAATTCTGA+AGG - chr4_1:58707763-58707782 Msa0559530:intron 25.0%
!! TTTTGTTCTTACTAAGATGA+AGG - chr4_1:58708041-58708060 Msa0559530:intron 25.0%
!!! CTTTAGAAATTGTTTTTCCA+AGG + chr4_1:58708083-58708102 None:intergenic 25.0%
!! ACCGTTTGAAATTTCTAAAA+TGG + chr4_1:58708295-58708314 None:intergenic 25.0%
! TAATGATAGGTTAAGAAAGA+TGG + chr4_1:58708354-58708373 None:intergenic 25.0%
! ATCTTTCTTAACCTATCATT+AGG - chr4_1:58708353-58708372 Msa0559530:CDS 25.0%
!! TCACTGATAACATATTTTTC+AGG - chr4_1:58708393-58708412 Msa0559530:CDS 25.0%
!!! AGATTTTGATAATGCTTTGT+TGG - chr4_1:58708453-58708472 Msa0559530:CDS 25.0%
!!! AGAATTGTTTTCTATTTCTG+AGG - chr4_1:58709081-58709100 Msa0559530:CDS 25.0%
!!! AGTAAGATACTTTTTTTGGA+GGG + chr4_1:58709161-58709180 None:intergenic 25.0%
!!! TGTCAGTAAGATACTTTTTT+TGG + chr4_1:58709165-58709184 None:intergenic 25.0%
! AAACCAAAATAAAACCAAAC+AGG + chr4_1:58709229-58709248 None:intergenic 25.0%
!!! TTTTGAAAAGGAAATCAAAC+AGG - chr4_1:58709443-58709462 Msa0559530:CDS 25.0%
! GAAAACAAAAGAGAAATCTA+GGG + chr4_1:58709469-58709488 None:intergenic 25.0%
!!! GTAACATGTAGATTTTGAAA+AGG - chr4_1:58709527-58709546 Msa0559530:intron 25.0%
!!! TTTTGAAAAGGAAATCAAAC+AGG - chr4_1:58709443-58709462 Msa0559530:CDS 25.0%
TGTGCGGTTGTAATAATATA+GGG + chr4_1:58706645-58706664 None:intergenic 30.0%
ATGTGCGGTTGTAATAATAT+AGG + chr4_1:58706646-58706665 None:intergenic 30.0%
TGAAGTGAAATTAGGGTTTA+GGG + chr4_1:58706697-58706716 None:intergenic 30.0%
!!! AAGAAGGGTTTAGTTTTGTT+TGG + chr4_1:58706723-58706742 None:intergenic 30.0%
! CATGAGTTATGTTATTTGCA+TGG - chr4_1:58706913-58706932 Msa0559530:three_prime_UTR 30.0%
!! TCTACTTTTCACATAATCTG+TGG - chr4_1:58707077-58707096 Msa0559530:CDS 30.0%
!!! TTTTTTGTGTTACCGATCAT+TGG - chr4_1:58707154-58707173 Msa0559530:CDS 30.0%
! TTTTTGTGTTACCGATCATT+GGG - chr4_1:58707155-58707174 Msa0559530:CDS 30.0%
AATATACATGACCCAATGAT+CGG + chr4_1:58707169-58707188 None:intergenic 30.0%
ATTGGGTCATGTATATTTGT+TGG - chr4_1:58707172-58707191 Msa0559530:CDS 30.0%
TAACAACATGTCATTGAACA+TGG + chr4_1:58707226-58707245 None:intergenic 30.0%
TGATATCATGGTATCATTCA+TGG - chr4_1:58707332-58707351 Msa0559530:CDS 30.0%
CTGCAAAACAATCAAAAGAA+AGG + chr4_1:58707421-58707440 None:intergenic 30.0%
TTCATGTGTTTCTTTAATGG+AGG - chr4_1:58707645-58707664 Msa0559530:intron 30.0%
TCATGTGTTTCTTTAATGGA+GGG - chr4_1:58707646-58707665 Msa0559530:intron 30.0%
!! AAAAAGAGTATTTGTTGGGT+TGG + chr4_1:58707872-58707891 None:intergenic 30.0%
! AACCCAACAAATACTCTTTT+TGG - chr4_1:58707871-58707890 Msa0559530:intron 30.0%
!! TGCCAAAAAGAGTATTTGTT+GGG + chr4_1:58707876-58707895 None:intergenic 30.0%
AACACAAAAGGAGATGAAAA+TGG - chr4_1:58707933-58707952 Msa0559530:intron 30.0%
!! TAAGAACAAAAGCACCAATT+TGG + chr4_1:58708032-58708051 None:intergenic 30.0%
AATTTCAAACGGTGTATTTG+AGG - chr4_1:58708302-58708321 Msa0559530:CDS 30.0%
!! TGATAGTATTGATCTTGCAA+AGG - chr4_1:58708504-58708523 Msa0559530:CDS 30.0%
TGGTAAATAACCTGATTGAA+AGG - chr4_1:58708686-58708705 Msa0559530:CDS 30.0%
AACATCCTTGATAGATATGT+TGG + chr4_1:58708746-58708765 None:intergenic 30.0%
!!! GTAAGATACTTTTTTTGGAG+GGG + chr4_1:58709160-58709179 None:intergenic 30.0%
!!! CAGTAAGATACTTTTTTTGG+AGG + chr4_1:58709162-58709181 None:intergenic 30.0%
GAACCATTGTAAATAACTGA+AGG - chr4_1:58709203-58709222 Msa0559530:CDS 30.0%
GTTCACATAGAATCAGAAAA+AGG - chr4_1:58709370-58709389 Msa0559530:CDS 30.0%
ATAAAACAGAAACACCTTCT+AGG + chr4_1:58709402-58709421 None:intergenic 30.0%
CGAAAACAAAAGAGAAATCT+AGG + chr4_1:58709470-58709489 None:intergenic 30.0%
GAATAGTGAATCGATAAAAC+AGG + chr4_1:58709493-58709512 None:intergenic 30.0%
CTTTCAGCACAAACAAAAAA+TGG + chr4_1:58710464-58710483 None:intergenic 30.0%
ATATATTAACCACCAACCAA+TGG + chr4_1:58710494-58710513 None:intergenic 30.0%
GGTTGTAATAATATAGGGGT+GGG + chr4_1:58706640-58706659 None:intergenic 35.0%
GTGCGGTTGTAATAATATAG+GGG + chr4_1:58706644-58706663 None:intergenic 35.0%
GAATGAGGTTATGAAATGTG+CGG + chr4_1:58706661-58706680 None:intergenic 35.0%
!! GAAATTAGGGTTTAGGGTTT+TGG + chr4_1:58706691-58706710 None:intergenic 35.0%
GTGAAGTGAAATTAGGGTTT+AGG + chr4_1:58706698-58706717 None:intergenic 35.0%
TTGGCTGTGAAGTGAAATTA+GGG + chr4_1:58706704-58706723 None:intergenic 35.0%
TTTGGCTGTGAAGTGAAATT+AGG + chr4_1:58706705-58706724 None:intergenic 35.0%
! CTCTATTTTCCGATTCACTA+TGG - chr4_1:58706756-58706775 Msa0559530:three_prime_UTR 35.0%
ATAGAGATTTACCGATCGAA+AGG + chr4_1:58706836-58706855 None:intergenic 35.0%
TGAGCAAAAATAGTGAAGTG+AGG + chr4_1:58706861-58706880 None:intergenic 35.0%
TTGCATGGTGTATCAATATG+TGG - chr4_1:58706928-58706947 Msa0559530:three_prime_UTR 35.0%
TGCATGGTGTATCAATATGT+GGG - chr4_1:58706929-58706948 Msa0559530:three_prime_UTR 35.0%
GTTCCGTGATACTATCATTT+GGG - chr4_1:58707099-58707118 Msa0559530:CDS 35.0%
AGACCCAAATGATAGTATCA+CGG + chr4_1:58707105-58707124 None:intergenic 35.0%
!! TTGATTGTTTTGCAGTTGAC+AGG - chr4_1:58707426-58707445 Msa0559530:CDS 35.0%
ATCATATGCAGCTCAAAAGT+GGG - chr4_1:58707461-58707480 Msa0559530:CDS 35.0%
! TGCTTTTGTACTACAGTTCT+AGG - chr4_1:58707578-58707597 Msa0559530:CDS 35.0%
TGTTTCTTTAATGGAGGGAA+AGG - chr4_1:58707651-58707670 Msa0559530:intron 35.0%
!! GTGCCAAAAAGAGTATTTGT+TGG + chr4_1:58707877-58707896 None:intergenic 35.0%
! TTCATCTCCTTTTGTGTTTG+CGG + chr4_1:58707931-58707950 None:intergenic 35.0%
!!! CTCATTGCTGTTTTTGATCT+CGG - chr4_1:58708249-58708268 Msa0559530:CDS 35.0%
GATATTCAAATGCTTTGCAC+CGG + chr4_1:58708638-58708657 None:intergenic 35.0%
TAACCTGATTGAAAGGACAA+AGG - chr4_1:58708693-58708712 Msa0559530:CDS 35.0%
AGATGCCAACATATCTATCA+AGG - chr4_1:58708738-58708757 Msa0559530:CDS 35.0%
ATCTATCAAGGATGTTGATG+AGG - chr4_1:58708750-58708769 Msa0559530:CDS 35.0%
ATTACCTGACTCTTCTTTGT+CGG + chr4_1:58709021-58709040 None:intergenic 35.0%
!!! ATACTTTTTTTGGAGGGGTT+GGG + chr4_1:58709155-58709174 None:intergenic 35.0%
AGTATCTTACTGACATTCCA+AGG - chr4_1:58709170-58709189 Msa0559530:CDS 35.0%
GTATCTTACTGACATTCCAA+GGG - chr4_1:58709171-58709190 Msa0559530:CDS 35.0%
AGGCCTTCAGTTATTTACAA+TGG + chr4_1:58709209-58709228 None:intergenic 35.0%
TAAATAACTGAAGGCCTGTT+TGG - chr4_1:58709212-58709231 Msa0559530:CDS 35.0%
!!! AGGCCTGTTTGGTTTTATTT+TGG - chr4_1:58709223-58709242 Msa0559530:CDS 35.0%
GAAAAAGGATAACACCTAGA+AGG - chr4_1:58709385-58709404 Msa0559530:CDS 35.0%
TCAAATGTGACTTCAATCTG+AGG + chr4_1:58709805-58709824 None:intergenic 35.0%
ACATTTGACATAGATGCCAA+TGG - chr4_1:58709817-58709836 Msa0559530:intron 35.0%
CATTTGACATAGATGCCAAT+GGG - chr4_1:58709818-58709837 Msa0559530:intron 35.0%
!! TTTTCCAGTGGATTTGTCTT+TGG + chr4_1:58709860-58709879 None:intergenic 35.0%
! AATCTGTTGTTCTTTTCCAG+TGG + chr4_1:58709872-58709891 None:intergenic 35.0%
AATCGAGTAGATTGATGTGT+CGG + chr4_1:58710013-58710032 None:intergenic 35.0%
AAAAGAGTTTGAGCGAGTAT+AGG - chr4_1:58710034-58710053 Msa0559530:intron 35.0%
AAAGAGTTTGAGCGAGTATA+GGG - chr4_1:58710035-58710054 Msa0559530:intron 35.0%
!!! TCCTTATTTTGTCGTACTGT+TGG - chr4_1:58710379-58710398 Msa0559530:intron 35.0%
TCCAACAGTACGACAAAATA+AGG + chr4_1:58710383-58710402 None:intergenic 35.0%
TGCTGAAAGTTATCTACCAT+TGG - chr4_1:58710475-58710494 Msa0559530:exon 35.0%
GAAAGTTATCTACCATTGGT+TGG - chr4_1:58710479-58710498 Msa0559530:exon 35.0%
CGGTTGTAATAATATAGGGG+TGG + chr4_1:58706641-58706660 None:intergenic 40.0%
AGAGAGAGAGAGAGAAAGAA+GGG + chr4_1:58706738-58706757 None:intergenic 40.0%
GGTTCCGTGATACTATCATT+TGG - chr4_1:58707098-58707117 Msa0559530:CDS 40.0%
TGTGTGTTAGGGATGATGAA+AGG - chr4_1:58707128-58707147 Msa0559530:CDS 40.0%
TGGTATCATTCATGGAACAG+CGG - chr4_1:58707340-58707359 Msa0559530:CDS 40.0%
! CACTTTTGAGCTGCATATGA+TGG + chr4_1:58707462-58707481 None:intergenic 40.0%
CATCATATGCAGCTCAAAAG+TGG - chr4_1:58707460-58707479 Msa0559530:CDS 40.0%
TGCCTTTGTTCTGTACTGTA+TGG - chr4_1:58707517-58707536 Msa0559530:CDS 40.0%
TGCCATACAGTACAGAACAA+AGG + chr4_1:58707522-58707541 None:intergenic 40.0%
CTTTAATGGAGGGAAAGGTA+AGG - chr4_1:58707656-58707675 Msa0559530:intron 40.0%
!!! TTGGACATGTTTTTGGTGCA+TGG - chr4_1:58707700-58707719 Msa0559530:intron 40.0%
! AAGGGCATAAACATTAGTCC+AGG + chr4_1:58707732-58707751 None:intergenic 40.0%
! TTGAGAATTCTGAAGGAGCT+CGG - chr4_1:58707770-58707789 Msa0559530:intron 40.0%
TTTGGCACCAAACGTTTGAT+TGG - chr4_1:58707889-58707908 Msa0559530:intron 40.0%
TGATGATCCGCAAACACAAA+AGG - chr4_1:58707921-58707940 Msa0559530:intron 40.0%
GGTACCCTATAAGATTGTCA+AGG - chr4_1:58707954-58707973 Msa0559530:intron 40.0%
GGTGCCTTGACAATCTTATA+GGG + chr4_1:58707961-58707980 None:intergenic 40.0%
CAATATTCTCCCAGCCAAAT+TGG - chr4_1:58708015-58708034 Msa0559530:intron 40.0%
!! ACAAAAGCACCAATTTGGCT+GGG + chr4_1:58708027-58708046 None:intergenic 40.0%
!! AACAAAAGCACCAATTTGGC+TGG + chr4_1:58708028-58708047 None:intergenic 40.0%
TAAGATGAAGGAAACTGCTG+AGG - chr4_1:58708053-58708072 Msa0559530:intron 40.0%
TGAGCATCATTGAAGTAAGC+TGG + chr4_1:58708120-58708139 None:intergenic 40.0%
CTTACTTCAATGATGCTCAG+AGG - chr4_1:58708121-58708140 Msa0559530:intron 40.0%
AAAGATGCTGGTAGAATTGC+CGG - chr4_1:58708153-58708172 Msa0559530:intron 40.0%
AATTCTCAGCACTTCAAGAC+CGG + chr4_1:58708175-58708194 None:intergenic 40.0%
ATATGGGATGAACAGCAAAG+AGG - chr4_1:58708224-58708243 Msa0559530:intron 40.0%
TATGGGATGAACAGCAAAGA+GGG - chr4_1:58708225-58708244 Msa0559530:intron 40.0%
!!! ATTGCTGTTTTTGATCTCGG+AGG - chr4_1:58708252-58708271 Msa0559530:CDS 40.0%
! TTTCAGGTGAAAGCTACCAA+TGG - chr4_1:58708409-58708428 Msa0559530:CDS 40.0%
TACCAATGGTGACACTTTCT+TGG - chr4_1:58708423-58708442 Msa0559530:CDS 40.0%
ACCAATGGTGACACTTTCTT+GGG - chr4_1:58708424-58708443 Msa0559530:CDS 40.0%
GTTGACTAGATCGAAGTTTG+AGG - chr4_1:58708660-58708679 Msa0559530:CDS 40.0%
! TAGATCGAAGTTTGAGGCTT+TGG - chr4_1:58708666-58708685 Msa0559530:CDS 40.0%
TCTTTCAAGCAGCTCTTACA+GGG + chr4_1:58708721-58708740 None:intergenic 40.0%
ATCTTTCAAGCAGCTCTTAC+AGG + chr4_1:58708722-58708741 None:intergenic 40.0%
TTTGGAAAGAGTCCTAGCAA+AGG - chr4_1:58708832-58708851 Msa0559530:CDS 40.0%
TCAGGATTTACTCCTTTGCT+AGG + chr4_1:58708847-58708866 None:intergenic 40.0%
CAAAGGAGTAAATCCTGATG+AGG - chr4_1:58708849-58708868 Msa0559530:intron 40.0%
TTGTCGGAATTGTTGTGTTG+CGG + chr4_1:58709005-58709024 None:intergenic 40.0%
AATTCCGACAAAGAAGAGTC+AGG - chr4_1:58709014-58709033 Msa0559530:CDS 40.0%
!!! TACTTTTTTTGGAGGGGTTG+GGG + chr4_1:58709154-58709173 None:intergenic 40.0%
!!! GATACTTTTTTTGGAGGGGT+TGG + chr4_1:58709156-58709175 None:intergenic 40.0%
ATGGTTCTCTTCTTTACCCT+TGG + chr4_1:58709190-58709209 None:intergenic 40.0%
TCGCGAAAACGAGAAACTTA+GGG + chr4_1:58709565-58709584 None:intergenic 40.0%
CTTGGAGAATTTGACCTTGT+TGG - chr4_1:58709754-58709773 Msa0559530:intron 40.0%
AGAGACAGTAACAATCCCAT+TGG + chr4_1:58709836-58709855 None:intergenic 40.0%
TAGGGAAAAGATTCCTAGTG+AGG - chr4_1:58710053-58710072 Msa0559530:intron 40.0%
TGCGAAGGAAATTGAAGATG+CGG - chr4_1:58710077-58710096 Msa0559530:intron 40.0%
AACAAAGCCGTGTCAAAGAT+TGG - chr4_1:58710168-58710187 Msa0559530:intron 40.0%
ATGCTGACCAATCTTTGACA+CGG + chr4_1:58710178-58710197 None:intergenic 40.0%
! AAGATTGGTCAGCATATGTC+AGG - chr4_1:58710183-58710202 Msa0559530:intron 40.0%
! AGTTATCTACCATTGGTTGG+TGG - chr4_1:58710482-58710501 Msa0559530:exon 40.0%
GTTAAACTTTCGTCGGAGAA+AGG - chr4_1:58710549-58710568 Msa0559530:five_prime_UTR 40.0%
!!! GGTTTTGGTAGTGACGAATG+AGG + chr4_1:58706676-58706695 None:intergenic 45.0%
GAGAGAGAGAGAGAGAAAGA+AGG + chr4_1:58706739-58706758 None:intergenic 45.0%
! ATCTGTGTGAATCTGAGACG+TGG - chr4_1:58707012-58707031 Msa0559530:CDS 45.0%
TTTGGGTCTCTGTGTGTGTT+AGG - chr4_1:58707116-58707135 Msa0559530:CDS 45.0%
TTGGGTCTCTGTGTGTGTTA+GGG - chr4_1:58707117-58707136 Msa0559530:CDS 45.0%
TGTTGGATTACCTTTGCGAC+TGG - chr4_1:58707189-58707208 Msa0559530:CDS 45.0%
AACAGTATAGCCAGTCGCAA+AGG + chr4_1:58707202-58707221 None:intergenic 45.0%
AGCTCAAAAGTGGGCAAGTT+TGG - chr4_1:58707470-58707489 Msa0559530:CDS 45.0%
! GGCAAAACAAAGCACCTGAA+AGG + chr4_1:58707501-58707520 None:intergenic 45.0%
CCAATAACATCACTACCAGC+AGG + chr4_1:58707604-58707623 None:intergenic 45.0%
! CCTGCTGGTAGTGATGTTAT+TGG - chr4_1:58707601-58707620 Msa0559530:intron 45.0%
!! TTTGGTGCATGGTTTTTGCC+TGG - chr4_1:58707711-58707730 Msa0559530:intron 45.0%
GCACCAAACGTTTGATTGGT+AGG - chr4_1:58707893-58707912 Msa0559530:intron 45.0%
GGGTGCCTTGACAATCTTAT+AGG + chr4_1:58707962-58707981 None:intergenic 45.0%
! AAGATTGTCAAGGCACCCAA+TGG - chr4_1:58707964-58707983 Msa0559530:intron 45.0%
TCAACCCATGCATCTCCATT+GGG + chr4_1:58707982-58708001 None:intergenic 45.0%
TTCAACCCATGCATCTCCAT+TGG + chr4_1:58707983-58708002 None:intergenic 45.0%
! TATGAAAGTGCAGCTGCAGT+GGG + chr4_1:58708207-58708226 None:intergenic 45.0%
! ATATGAAAGTGCAGCTGCAG+TGG + chr4_1:58708208-58708227 None:intergenic 45.0%
ACTGCAGCTGCACTTTCATA+TGG - chr4_1:58708207-58708226 Msa0559530:intron 45.0%
CTGCAGCTGCACTTTCATAT+GGG - chr4_1:58708208-58708227 Msa0559530:intron 45.0%
ATGGGATGAACAGCAAAGAG+GGG - chr4_1:58708226-58708245 Msa0559530:intron 45.0%
GGTTAAGAAAGATGGCAGCA+TGG + chr4_1:58708346-58708365 None:intergenic 45.0%
!! TCCCAAGAAAGTGTCACCAT+TGG + chr4_1:58708428-58708447 None:intergenic 45.0%
AATGGTGACACTTTCTTGGG+AGG - chr4_1:58708427-58708446 Msa0559530:CDS 45.0%
CATCAGCAGTGATGAAAGGA+AGG + chr4_1:58708612-58708631 None:intergenic 45.0%
GATGCATCAGCAGTGATGAA+AGG + chr4_1:58708616-58708635 None:intergenic 45.0%
TTCATCACTGCTGATGCATC+CGG - chr4_1:58708616-58708635 Msa0559530:CDS 45.0%
GTGCCTTTGTCCTTTCAATC+AGG + chr4_1:58708699-58708718 None:intergenic 45.0%
! GTTGATGAGGTTCTTCTCGT+CGG - chr4_1:58708763-58708782 Msa0559530:CDS 45.0%
GAGGTGGTTTCAGAGATCTT+TGG - chr4_1:58708814-58708833 Msa0559530:CDS 45.0%
GCAGCTCTTTAACATCACCA+CGG + chr4_1:58708912-58708931 None:intergenic 45.0%
!! ATCCCTGGGTATTGAGACTT+TGG - chr4_1:58708954-58708973 Msa0559530:CDS 45.0%
!! TCCCTGGGTATTGAGACTTT+GGG - chr4_1:58708955-58708974 Msa0559530:CDS 45.0%
ACCCAAAGTCTCAATACCCA+GGG + chr4_1:58708959-58708978 None:intergenic 45.0%
TGTCGGAATTGTTGTGTTGC+GGG + chr4_1:58709004-58709023 None:intergenic 45.0%
!!! ACTTTTTTTGGAGGGGTTGG+GGG + chr4_1:58709153-58709172 None:intergenic 45.0%
CTCGCGAAAACGAGAAACTT+AGG + chr4_1:58709566-58709585 None:intergenic 45.0%
AGCTGACAATCAGACTCAAG+TGG - chr4_1:58709681-58709700 Msa0559530:intron 45.0%
GCTGACAATCAGACTCAAGT+GGG - chr4_1:58709682-58709701 Msa0559530:intron 45.0%
TCAGACTCAAGTGGGTATCA+AGG - chr4_1:58709690-58709709 Msa0559530:intron 45.0%
! AATCTGAGGCAAACCTCTTG+GGG + chr4_1:58709791-58709810 None:intergenic 45.0%
! CAATCTGAGGCAAACCTCTT+GGG + chr4_1:58709792-58709811 None:intergenic 45.0%
! TCAATCTGAGGCAAACCTCT+TGG + chr4_1:58709793-58709812 None:intergenic 45.0%
TCTGCCAAAGACAAATCCAC+TGG - chr4_1:58709853-58709872 Msa0559530:intron 45.0%
ATGCTCAGAGAGATCAGGAA+AGG - chr4_1:58709959-58709978 Msa0559530:intron 45.0%
ATTTCCTTCGCAACCTCACT+AGG + chr4_1:58710069-58710088 None:intergenic 45.0%
TGCGGTCTCAGATTTGAGAA+CGG - chr4_1:58710095-58710114 Msa0559530:intron 45.0%
CTCAGATTTGAGAACGGCTA+TGG - chr4_1:58710101-58710120 Msa0559530:intron 45.0%
ATTGGTCAGCATATGTCAGG+TGG - chr4_1:58710186-58710205 Msa0559530:intron 45.0%
TTGGTCAGCATATGTCAGGT+GGG - chr4_1:58710187-58710206 Msa0559530:intron 45.0%
CAGAGGAAGAAGCAAGATCG+CGG + chr4_1:58706807-58706826 None:intergenic 50.0%
CTCTGTCTCTGCCTTTCGAT+CGG - chr4_1:58706822-58706841 Msa0559530:three_prime_UTR 50.0%
! CAAGTTTGGCTCGACCTTTC+AGG - chr4_1:58707484-58707503 Msa0559530:CDS 50.0%
!! TACTACAGTTCTAGGCCTGC+TGG - chr4_1:58707586-58707605 Msa0559530:intron 50.0%
TGGTTGAAGGCAACCACTGA+TGG + chr4_1:58707802-58707821 None:intergenic 50.0%
GTGGTTGCCTTCAACCAGAA+AGG - chr4_1:58707805-58707824 Msa0559530:intron 50.0%
!! CAGCTCTCCTTTCTGGTTGA+AGG + chr4_1:58707815-58707834 None:intergenic 50.0%
CAACAAGCAGCTCTCCTTTC+TGG + chr4_1:58707822-58707841 None:intergenic 50.0%
CAGAAAGGAGAGCTGCTTGT+TGG - chr4_1:58707820-58707839 Msa0559530:intron 50.0%
GCGCCTACCAATCAAACGTT+TGG + chr4_1:58707899-58707918 None:intergenic 50.0%
GAAACTGCTGAGGCATACCT+TGG - chr4_1:58708063-58708082 Msa0559530:intron 50.0%
CTTCAATGATGCTCAGAGGC+AGG - chr4_1:58708125-58708144 Msa0559530:intron 50.0%
AGGCAGGCAACAAAAGATGC+TGG - chr4_1:58708141-58708160 Msa0559530:intron 50.0%
!!! GCTGTTTTTGATCTCGGAGG+TGG - chr4_1:58708255-58708274 Msa0559530:CDS 50.0%
AGGATAAGCTTGCGTTGCAG+AGG - chr4_1:58708524-58708543 Msa0559530:CDS 50.0%
ATGAGGTTCTTCTCGTCGGA+GGG - chr4_1:58708767-58708786 Msa0559530:CDS 50.0%
GACTCGTGTACCTAAAGTGC+AGG - chr4_1:58708792-58708811 Msa0559530:CDS 50.0%
TCGTGTACCTAAAGTGCAGG+AGG - chr4_1:58708795-58708814 Msa0559530:CDS 50.0%
TGTACCTAAAGTGCAGGAGG+TGG - chr4_1:58708798-58708817 Msa0559530:CDS 50.0%
GAAACCACCTCCTGCACTTT+AGG + chr4_1:58708805-58708824 None:intergenic 50.0%
TCCTGATGAGGCTGTTGCAA+TGG - chr4_1:58708861-58708880 Msa0559530:intron 50.0%
CCTGATGAGGCTGTTGCAAT+GGG - chr4_1:58708862-58708881 Msa0559530:intron 50.0%
GGGATAGAGGAGTGACATCT+AGG + chr4_1:58708939-58708958 None:intergenic 50.0%
AGATGTCACTCCTCTATCCC+TGG - chr4_1:58708939-58708958 Msa0559530:intron 50.0%
GATGTCACTCCTCTATCCCT+GGG - chr4_1:58708940-58708959 Msa0559530:intron 50.0%
GTCTCAATACCCAGGGATAG+AGG + chr4_1:58708952-58708971 None:intergenic 50.0%
CACCCAAAGTCTCAATACCC+AGG + chr4_1:58708960-58708979 None:intergenic 50.0%
!! CTGGGTATTGAGACTTTGGG+TGG - chr4_1:58708958-58708977 Msa0559530:CDS 50.0%
! TGGGTATCAAGGTGCTCCAA+GGG - chr4_1:58709701-58709720 Msa0559530:intron 50.0%
GCTGCAGACAACAAGAGTCT+TGG - chr4_1:58709736-58709755 Msa0559530:intron 50.0%
CAGATTACCATCCGCTCATC+AGG - chr4_1:58709886-58709905 Msa0559530:intron 50.0%
ATTACCATCCGCTCATCAGG+AGG - chr4_1:58709889-58709908 Msa0559530:intron 50.0%
GTTGCATGCTCAGAGAGATC+AGG - chr4_1:58709954-58709973 Msa0559530:intron 50.0%
GATTCCTAGTGAGGTTGCGA+AGG - chr4_1:58710062-58710081 Msa0559530:intron 50.0%
GATTTGAGAACGGCTATGGC+AGG - chr4_1:58710105-58710124 Msa0559530:intron 50.0%
CATATGTCAGGTGGGTCAAG+TGG - chr4_1:58710195-58710214 Msa0559530:intron 50.0%
TCAAGTGGAGGTTCCTCTGA+TGG - chr4_1:58710210-58710229 Msa0559530:intron 50.0%
TCCAGAGGCAGAGTATGAAG+AGG - chr4_1:58710260-58710279 Msa0559530:intron 50.0%
ACCTCTTCATACTCTGCCTC+TGG + chr4_1:58710264-58710283 None:intergenic 50.0%
AGACGGCGGCCATAGTGAAT+CGG + chr4_1:58706768-58706787 None:intergenic 55.0%
AGGAAGAAGCAAGATCGCGG+CGG + chr4_1:58706804-58706823 None:intergenic 55.0%
CGATCGAAAGGCAGAGACAG+AGG + chr4_1:58706824-58706843 None:intergenic 55.0%
AGCTCGGACAACACCATCAG+TGG - chr4_1:58707786-58707805 Msa0559530:intron 55.0%
GTTGGTTACAGCCTGACGCT+TGG + chr4_1:58707854-58707873 None:intergenic 55.0%
AGGCACCCAATGGAGATGCA+TGG - chr4_1:58707974-58707993 Msa0559530:intron 55.0%
GGCACCCAATGGAGATGCAT+GGG - chr4_1:58707975-58707994 Msa0559530:intron 55.0%
GATGAGGTTCTTCTCGTCGG+AGG - chr4_1:58708766-58708785 Msa0559530:CDS 55.0%
CCCATTGCAACAGCCTCATC+AGG + chr4_1:58708865-58708884 None:intergenic 55.0%
TGCAATGGGAGCAGCTCTTC+AGG - chr4_1:58708876-58708895 Msa0559530:intron 55.0%
GCAATGGGAGCAGCTCTTCA+GGG - chr4_1:58708877-58708896 Msa0559530:intron 55.0%
CTTCAGGGTGGTATTCTCCG+TGG - chr4_1:58708892-58708911 Msa0559530:intron 55.0%
! GTGGGTATCAAGGTGCTCCA+AGG - chr4_1:58709700-58709719 Msa0559530:intron 55.0%
! GGGTATCAAGGTGCTCCAAG+GGG - chr4_1:58709702-58709721 Msa0559530:intron 55.0%
CTGAGAGTCCTCCTGATGAG+CGG + chr4_1:58709900-58709919 None:intergenic 55.0%
ATGTCAGGTGGGTCAAGTGG+AGG - chr4_1:58710198-58710217 Msa0559530:intron 55.0%
AGTGGAGGTTCCTCTGATGG+AGG - chr4_1:58710213-58710232 Msa0559530:intron 55.0%
TCCTCTGATGGAGGTTCTCC+AGG - chr4_1:58710222-58710241 Msa0559530:intron 55.0%
ACCTGGAGAACCTCCATCAG+AGG + chr4_1:58710226-58710245 None:intergenic 55.0%
TCTGATGGAGGTTCTCCAGG+TGG - chr4_1:58710225-58710244 Msa0559530:intron 55.0%
! TTCTCCAGGTGGTGGTGAAC+AGG - chr4_1:58710236-58710255 Msa0559530:intron 55.0%
TGGTACACCTGCCAAGCGTC+AGG - chr4_1:58707840-58707859 Msa0559530:intron 60.0%
GTTACAGCCTGACGCTTGGC+AGG + chr4_1:58707850-58707869 None:intergenic 60.0%
ATGGGAGCAGCTCTTCAGGG+TGG - chr4_1:58708880-58708899 Msa0559530:intron 60.0%
! GCTCCAAGGGGAGCGTGAAA+TGG - chr4_1:58709714-58709733 Msa0559530:intron 60.0%
CAGCCATTTCACGCTCCCCT+TGG + chr4_1:58709720-58709739 None:intergenic 60.0%
GGGCAGGAGGAATGCCAACA+AGG + chr4_1:58709771-58709790 None:intergenic 60.0%
TGAGGCAAACCTCTTGGGGC+AGG + chr4_1:58709787-58709806 None:intergenic 60.0%
GAGTCCTCCTGATGAGCGGA+TGG + chr4_1:58709896-58709915 None:intergenic 60.0%
GATGGAGGTTCTCCAGGTGG+TGG - chr4_1:58710228-58710247 Msa0559530:intron 60.0%
! TGGTGGTGAACAGGCTCCAG+AGG - chr4_1:58710245-58710264 Msa0559530:intron 60.0%
CAAGATCGCGGCGGAGAGCA+CGG + chr4_1:58706795-58706814 None:intergenic 65.0%
GGCATTCCTCCTGCCCCAAG+AGG - chr4_1:58709775-58709794 Msa0559530:CDS 65.0%
GGCAAACCTCTTGGGGCAGG+AGG + chr4_1:58709784-58709803 None:intergenic 65.0%
GGAGCCTGTTCACCACCACC+TGG + chr4_1:58710243-58710262 None:intergenic 65.0%
! GAGAGCACGGCGCAAGACGG+CGG + chr4_1:58706782-58706801 None:intergenic 70.0%
! GCGGAGAGCACGGCGCAAGA+CGG + chr4_1:58706785-58706804 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 58706627 58710639 58706627 ID=Msa0559530;Name=Msa0559530
chr4_1 mRNA 58706627 58710639 58706627 ID=Msa0559530-mRNA-1;Parent=Msa0559530;Name=Msa0559530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=148|1|1|1|1|1|6|346|675
chr4_1 exon 58706627 58707599 58706627 ID=Msa0559530-mRNA-1:exon:17972;Parent=Msa0559530-mRNA-1
chr4_1 exon 58708231 58708851 58708231 ID=Msa0559530-mRNA-1:exon:17971;Parent=Msa0559530-mRNA-1
chr4_1 exon 58708943 58709509 58708943 ID=Msa0559530-mRNA-1:exon:17970;Parent=Msa0559530-mRNA-1
chr4_1 exon 58709594 58709672 58709594 ID=Msa0559530-mRNA-1:exon:17969;Parent=Msa0559530-mRNA-1
chr4_1 exon 58709761 58709825 58709761 ID=Msa0559530-mRNA-1:exon:17968;Parent=Msa0559530-mRNA-1
chr4_1 exon 58710423 58710639 58710423 ID=Msa0559530-mRNA-1:exon:17967;Parent=Msa0559530-mRNA-1
chr4_1 five_prime_UTR 58710492 58710639 58710492 ID=Msa0559530-mRNA-1:five_prime_utr;Parent=Msa0559530-mRNA-1
chr4_1 CDS 58710423 58710491 58710423 ID=Msa0559530-mRNA-1:cds;Parent=Msa0559530-mRNA-1
chr4_1 CDS 58709761 58709825 58709761 ID=Msa0559530-mRNA-1:cds;Parent=Msa0559530-mRNA-1
chr4_1 CDS 58709594 58709672 58709594 ID=Msa0559530-mRNA-1:cds;Parent=Msa0559530-mRNA-1
chr4_1 CDS 58708943 58709509 58708943 ID=Msa0559530-mRNA-1:cds;Parent=Msa0559530-mRNA-1
chr4_1 CDS 58708231 58708851 58708231 ID=Msa0559530-mRNA-1:cds;Parent=Msa0559530-mRNA-1
chr4_1 CDS 58706973 58707599 58706973 ID=Msa0559530-mRNA-1:cds;Parent=Msa0559530-mRNA-1
chr4_1 three_prime_UTR 58706627 58706972 58706627 ID=Msa0559530-mRNA-1:three_prime_utr;Parent=Msa0559530-mRNA-1
Gene Sequence

>Msa0559530

ATGGCCGCCGTCTTGCGCCGTGCTCTCCGCCGCGATCTTGCTTCTTCCTCTGTCTCTGCCTTTCGATCGTTGACAGGCAGCACTAAGCCATCATATGCAGCTCAAAAGTGGGCAAGTTTGGCTCGACCTTTCAGTTCTAGGCCTGCTGGTAGTGATGTTATTGGAATTGATTTGGGGACTACCAATTCATGTGTTTCTTTAATGGAGGGAAAGAATCCTAAAGTTATTGAGAATTCTGAAGGAGCTCGGACAACACCATCAGTGGTTGCCTTCAACCAGAAAGGAGAGCTGCTTGTTGGTACACCTGCCAAGCGTCAGGCTGTAACCAACCCAACAAATACTCTTTTTGGCACCAAACGTTTGATTGGTAGGCGCTTTGATGATCCGCAAACACAAAAGGAGATGAAAATGGTACCCTATAAGATTGTCAAGGCACCCAATGGAGATGCATGGGTTGAAATCAATAAGCAGCAATATTCTCCCAGCCAAATTGGTGCTTTTGTTCTTACTAAGATGAAGGAAACTGCTGAGGCATACCTTGGAAAAACAATTTCTAAAGCTGTAGTTACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCAACAAAAGATGCTGGTAGAATTGCCGGTCTTGAAGTGCTGAGAATTATCAATGAGCCCACTGCAGCTGCACTTTCATATGGGATGAACAGCAAAGAGGGGCTCATTGCTGTTTTTGATCTCGGAGGTGGAACATTTGATGTGTCCATTTTAGAAATTTCAAACGGTGTATTTGAGGTGAAAGCTACCAATGGTGACACTTTCTTGGGAGGAGAAGATTTTGATAATGCTTTGTTGGACTTTCTAGTAAGTGAATTCAAGAGAACTGATAGTATTGATCTTGCAAAGGATAAGCTTGCGTTGCAGAGGCTTCGAGAAGCTGCTGAGAAAGCAAAAATAGAACTCTCTTCAACTTCACAAACTGAAATAAACCTTCCTTTCATCACTGCTGATGCATCCGGTGCAAAGCATTTGAATATCACGTTGACTAGATCGAAGTTTGAGGCTTTGGTAAATAACCTGATTGAAAGGACAAAGGCACCCTGTAAGAGCTGCTTGAAAGATGCCAACATATCTATCAAGGATGTTGATGAGGTTCTTCTCGTCGGAGGGATGACTCGTGTACCTAAAGTGCAGGAGGTGGTTTCAGAGATCTTTGGAAAGAGTCCTAGCAAAGGAGTAAATCCTGATGAGGCTGTTGCAATGGGAGCAGCTCTTCAGGGTGGTATTCTCCGTGGTGATGTTAAAGAGCTGCTACTCCTAGATGTCACTCCTCTATCCCTGGGTATTGAGACTTTGGGTGGTATCTTTACAAGATTGATCTCCCGCAACACAACAATTCCGACAAAGAAGAGTCAGGTGTTTTCGACAGCAGCTGACAATCAGACTCAAGTGGGTATCAAGGTGCTCCAAGGGGAGCGTGAAATGGCTGCAGACAACAAGAGTCTTGGAGAATTTGACCTTGTTGGCATTCCTCCTGCCCCAAGAGGTTTGCCTCAGATTGAAGTCACATTTGACATAGATGCCAATGGGATTGTTACTGTCTCTGCCAAAGACAAATCCACTGGAAAAGAACAACAGATTACCATCCGCTCATCAGGAGGACTCTCAGATGATGAAATTAATAATATGGTCAAAGAAGCTGAGTTGCATGCTCAGAGAGATCAGGAAAGGAAAGCACTTATTGATATCAAGAATAGTGCCGACACATCAATCTACTCGATTGAAAAGAGTTTGAGCGAGTATAGGGAAAAGATTCCTAGTGAGGTTGCGAAGGAAATTGAAGATGCGGTCTCAGATTTGAGAACGGCTATGGCAGGAGAAAGTGTTGATGAAATTAAGACAAAACTTGACGCTGCAAACAAAGCCGTGTCAAAGATTGGTCAGCATATGTCAGGTGGGTCAAGTGGAGGTTCCTCTGATGGAGGTTCTCCAGGTGGTGGTGAACAGGCTCCAGAGGCAGAGTATGAAGAGGTCAAGAAGTGA
Protein sequence

>Msa0559530

MAAVLRRALRRDLASSSVSAFRSLTGSTKPSYAAQKWASLARPFSSRPAGSDVIGIDLGTTNSCVSLMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEINKQQYSPSQIGAFVLTKMKETAEAYLGKTISKAVVTVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALSYGMNSKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTDSIDLAKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNNLIERTKAPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKSLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSDDEINNMVKEAELHAQRDQERKALIDIKNSADTSIYSIEKSLSEYREKIPSEVAKEIEDAVSDLRTAMAGESVDEIKTKLDAANKAVSKIGQHMSGGSSGGSSDGGSPGGGEQAPEAEYEEVKK*