Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559770 | XP_003608372.2 | 97.765 | 537 | 12 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1088 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559770 | sp|Q0WM29|MMSA_ARATH | 78.327 | 526 | 111 | 2 | 12 | 536 | 83 | 606 | 0.0 | 863 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559770 | G7JU35 | 97.765 | 537 | 12 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1088 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0268070 | Msa0559770 | 0.804105 | 2.533740e-49 | -8.615850e-47 |
| Msa0559770 | Msa0697020 | 0.840650 | 7.653636e-58 | -8.615850e-47 |
| Msa0559770 | Msa1219790 | 0.800280 | 1.551765e-48 | -8.615850e-47 |
| Msa0559770 | Msa1244630 | 0.811660 | 6.266214e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559770 | MtrunA17_Chr4g0049641 | 97.765 | 537 | 12 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1088 |
| Msa0559770 | MtrunA17_Chr2g0279751 | 84.241 | 514 | 75 | 1 | 24 | 537 | 3 | 510 | 0.0 | 909 |
| Msa0559770 | MtrunA17_Chr2g0310091 | 30.435 | 506 | 338 | 9 | 14 | 514 | 33 | 529 | 9.29e-67 | 225 |
| Msa0559770 | MtrunA17_Chr6g0485301 | 31.185 | 481 | 307 | 11 | 45 | 514 | 25 | 492 | 1.37e-59 | 205 |
| Msa0559770 | MtrunA17_Chr8g0390631 | 32.231 | 484 | 298 | 14 | 45 | 514 | 17 | 484 | 1.85e-59 | 204 |
| Msa0559770 | MtrunA17_Chr6g0485311 | 31.643 | 493 | 311 | 12 | 37 | 514 | 9 | 490 | 2.26e-58 | 202 |
| Msa0559770 | MtrunA17_Chr8g0390651 | 31.352 | 488 | 313 | 12 | 36 | 514 | 19 | 493 | 4.43e-58 | 201 |
| Msa0559770 | MtrunA17_Chr3g0117861 | 32.422 | 512 | 316 | 14 | 25 | 520 | 41 | 538 | 1.06e-57 | 201 |
| Msa0559770 | MtrunA17_Chr8g0365221 | 31.214 | 519 | 314 | 14 | 25 | 520 | 39 | 537 | 4.69e-57 | 199 |
| Msa0559770 | MtrunA17_Chr4g0059221 | 32.759 | 464 | 291 | 10 | 24 | 474 | 42 | 497 | 1.81e-56 | 197 |
| Msa0559770 | MtrunA17_Chr3g0118121 | 27.824 | 478 | 319 | 10 | 59 | 518 | 25 | 494 | 8.52e-54 | 189 |
| Msa0559770 | MtrunA17_Chr3g0118081 | 26.939 | 490 | 315 | 9 | 59 | 524 | 55 | 525 | 2.52e-48 | 175 |
| Msa0559770 | MtrunA17_Chr4g0059521 | 28.810 | 479 | 320 | 9 | 59 | 524 | 25 | 495 | 7.27e-48 | 173 |
| Msa0559770 | MtrunA17_Chr1g0149961 | 28.000 | 475 | 320 | 9 | 48 | 513 | 22 | 483 | 3.47e-47 | 171 |
| Msa0559770 | MtrunA17_Chr4g0074171 | 27.459 | 488 | 325 | 11 | 37 | 513 | 14 | 483 | 1.16e-45 | 167 |
| Msa0559770 | MtrunA17_Chr2g0300801 | 26.350 | 463 | 323 | 7 | 42 | 495 | 22 | 475 | 1.30e-41 | 156 |
| Msa0559770 | MtrunA17_Chr2g0294411 | 24.884 | 430 | 312 | 7 | 54 | 474 | 61 | 488 | 2.64e-27 | 115 |
| Msa0559770 | MtrunA17_Chr8g0384741 | 27.762 | 353 | 237 | 9 | 174 | 521 | 166 | 505 | 6.40e-23 | 102 |
| Msa0559770 | MtrunA17_Chr8g0372381 | 25.310 | 403 | 282 | 9 | 80 | 474 | 8 | 399 | 6.09e-22 | 99.0 |
| Msa0559770 | MtrunA17_Chr1g0159811 | 27.597 | 308 | 202 | 8 | 174 | 474 | 113 | 406 | 6.91e-20 | 92.8 |
| Msa0559770 | MtrunA17_Chr3g0124811 | 27.213 | 305 | 207 | 8 | 174 | 474 | 115 | 408 | 9.17e-19 | 89.4 |
| Msa0559770 | MtrunA17_Chr2g0328781 | 27.010 | 311 | 203 | 9 | 174 | 474 | 117 | 413 | 5.00e-17 | 84.0 |
| Msa0559770 | MtrunA17_Chr4g0032441 | 26.837 | 313 | 201 | 10 | 174 | 474 | 102 | 398 | 1.76e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559770 | AT2G14170.1 | 78.327 | 526 | 111 | 2 | 12 | 536 | 83 | 606 | 0.0 | 863 |
| Msa0559770 | AT2G14170.2 | 81.250 | 496 | 91 | 1 | 41 | 536 | 4 | 497 | 0.0 | 853 |
| Msa0559770 | AT2G14170.3 | 79.268 | 492 | 101 | 1 | 12 | 502 | 83 | 574 | 0.0 | 818 |
| Msa0559770 | AT1G79440.1 | 32.636 | 478 | 309 | 8 | 41 | 514 | 52 | 520 | 7.00e-60 | 207 |
| Msa0559770 | AT3G24503.1 | 29.339 | 484 | 327 | 9 | 45 | 521 | 23 | 498 | 1.93e-55 | 194 |
| Msa0559770 | AT1G23800.1 | 31.481 | 486 | 311 | 13 | 45 | 520 | 57 | 530 | 2.21e-55 | 195 |
| Msa0559770 | AT3G48170.1 | 29.268 | 492 | 329 | 9 | 45 | 524 | 11 | 495 | 1.51e-54 | 192 |
| Msa0559770 | AT3G48000.1 | 30.495 | 505 | 325 | 11 | 22 | 514 | 38 | 528 | 1.15e-53 | 190 |
| Msa0559770 | AT1G74920.1 | 28.926 | 484 | 323 | 11 | 45 | 515 | 11 | 486 | 6.13e-52 | 185 |
| Msa0559770 | AT1G74920.2 | 28.719 | 484 | 319 | 12 | 45 | 515 | 11 | 481 | 6.72e-49 | 176 |
| Msa0559770 | AT2G24270.4 | 26.415 | 477 | 325 | 10 | 48 | 513 | 22 | 483 | 7.87e-45 | 166 |
| Msa0559770 | AT2G24270.3 | 26.415 | 477 | 325 | 10 | 48 | 513 | 22 | 483 | 8.45e-45 | 165 |
| Msa0559770 | AT2G24270.1 | 26.415 | 477 | 325 | 10 | 48 | 513 | 22 | 483 | 8.45e-45 | 165 |
| Msa0559770 | AT2G24270.2 | 26.255 | 518 | 350 | 12 | 7 | 513 | 27 | 523 | 1.01e-44 | 166 |
| Msa0559770 | AT1G54100.2 | 25.893 | 448 | 314 | 7 | 58 | 495 | 35 | 474 | 1.65e-41 | 156 |
| Msa0559770 | AT1G54100.1 | 25.893 | 448 | 314 | 7 | 58 | 495 | 35 | 474 | 1.65e-41 | 156 |
| Msa0559770 | AT1G23800.2 | 34.076 | 314 | 194 | 9 | 45 | 350 | 57 | 365 | 1.35e-35 | 138 |
| Msa0559770 | AT3G66658.1 | 23.721 | 430 | 317 | 6 | 54 | 474 | 61 | 488 | 7.42e-29 | 120 |
| Msa0559770 | AT3G66658.2 | 23.721 | 430 | 317 | 6 | 54 | 474 | 61 | 488 | 1.35e-28 | 120 |
| Msa0559770 | AT1G44170.3 | 25.429 | 350 | 241 | 11 | 174 | 517 | 46 | 381 | 1.15e-21 | 97.8 |
| Msa0559770 | AT1G44170.1 | 25.429 | 350 | 241 | 11 | 174 | 517 | 109 | 444 | 1.62e-21 | 98.2 |
| Msa0559770 | AT1G44170.2 | 25.429 | 350 | 241 | 11 | 174 | 517 | 109 | 444 | 1.62e-21 | 98.2 |
| Msa0559770 | AT4G36250.1 | 26.185 | 443 | 296 | 13 | 89 | 516 | 16 | 442 | 6.16e-20 | 93.2 |
| Msa0559770 | AT4G34240.3 | 28.105 | 306 | 203 | 9 | 174 | 474 | 30 | 323 | 3.46e-18 | 87.4 |
| Msa0559770 | AT4G34240.1 | 25.183 | 409 | 270 | 14 | 79 | 474 | 80 | 465 | 4.49e-18 | 87.8 |
| Msa0559770 | AT4G34240.4 | 25.183 | 409 | 270 | 14 | 79 | 474 | 65 | 450 | 5.61e-18 | 87.4 |
Find 151 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTATGGATATATTATTTA+TGG | 0.111055 | 4_1:-58909908 | None:intergenic |
| AAATTATACACATGACTTTC+TGG | 0.135571 | 4_1:-58909736 | None:intergenic |
| TAAAATATAAACCCTCATTT+TGG | 0.207517 | 4_1:-58909875 | None:intergenic |
| ATTTGGTGTGCAGTCTAATA+TGG | 0.210485 | 4_1:+58907182 | Msa0559770:intron |
| GCTTTAGTTGCTGCTGGTTT+TGG | 0.210605 | 4_1:+58907261 | Msa0559770:CDS |
| GCTTCTATATTTACTACTTC+TGG | 0.230981 | 4_1:+58908936 | Msa0559770:CDS |
| AAGAGGGTTCCCAATCTTAT+TGG | 0.235964 | 4_1:+58905371 | Msa0559770:CDS |
| TATGGTGTTTGAAGAAATTA+AGG | 0.245918 | 4_1:-58905090 | None:intergenic |
| TTCTATAATGCTTGCAGAAT+TGG | 0.246663 | 4_1:+58906440 | Msa0559770:CDS |
| AAATATAATATTGAAGGAAT+TGG | 0.264985 | 4_1:-58909851 | None:intergenic |
| GTTTCGGTTTATTATATATA+AGG | 0.269729 | 4_1:-58904994 | None:intergenic |
| GGAGACGTGTTTCGTGGTTT+AGG | 0.275929 | 4_1:+58905868 | Msa0559770:CDS |
| AATATAATATTGAAGGAATT+GGG | 0.282884 | 4_1:-58909850 | None:intergenic |
| CAAACCTGTTTGCTGATAAC+TGG | 0.309419 | 4_1:-58907800 | None:intergenic |
| AGAGGGTTCCCAATCTTATT+GGG | 0.311011 | 4_1:+58905372 | Msa0559770:CDS |
| GGCAACAAGGCGTCATTTGC+TGG | 0.317826 | 4_1:+58909268 | Msa0559770:CDS |
| GCTGGCGATCTCAATTTCTA+TGG | 0.319835 | 4_1:+58909286 | Msa0559770:CDS |
| GAATTTGATACGAAAGGATT+TGG | 0.341238 | 4_1:+58904932 | Msa0559770:five_prime_UTR |
| GGATATATTATTTATGGATT+CGG | 0.341738 | 4_1:-58909902 | None:intergenic |
| ACACGTTGGCGCGTCGTAAC+TGG | 0.345070 | 4_1:-58905630 | None:intergenic |
| CTTCAGTGTCTTTCCTTGTT+CGG | 0.357016 | 4_1:-58905836 | None:intergenic |
| AGCGTTTACTTTAAGAGCTT+TGG | 0.358538 | 4_1:-58907750 | None:intergenic |
| ATGCCTCAGATCTCTGCTTT+CGG | 0.359917 | 4_1:+58905299 | Msa0559770:CDS |
| ACCTCCATGAAAAGAAGAAC+TGG | 0.370811 | 4_1:-58908662 | None:intergenic |
| ACTAGGAAAGGAAAAGAATA+TGG | 0.382821 | 4_1:-58905108 | None:intergenic |
| GTGCACAGATTAGTTCAATC+TGG | 0.390956 | 4_1:+58907945 | Msa0559770:CDS |
| ATTGGAGCCAACAAATGATA+TGG | 0.397690 | 4_1:-58906787 | None:intergenic |
| TGTTGAATTGCAGGCAAAGC+AGG | 0.397895 | 4_1:+58909607 | Msa0559770:intron |
| ATAATCTGAAGCAGCTGTTT+CGG | 0.399228 | 4_1:-58905010 | None:intergenic |
| AATGGCAAAGGAACTGGAAT+AGG | 0.399481 | 4_1:-58909232 | None:intergenic |
| GGTGTCTTAAATGTTGTTCA+TGG | 0.407307 | 4_1:+58906486 | Msa0559770:CDS |
| TTTGGAAAATATAATATTGA+AGG | 0.413954 | 4_1:-58909857 | None:intergenic |
| GTGGAACATGCTTGTGGAAT+GGG | 0.416900 | 4_1:+58906004 | Msa0559770:CDS |
| TTTATATCATTTAGAGGTGG+TGG | 0.417923 | 4_1:+58905985 | Msa0559770:intron |
| ATCCACAATGGAATCATTGC+AGG | 0.418409 | 4_1:-58906133 | None:intergenic |
| TCTTCCATCAAGCAGTAGTC+TGG | 0.420204 | 4_1:-58907982 | None:intergenic |
| ACTCTTCAATAAAATGTCAT+AGG | 0.423041 | 4_1:+58909781 | Msa0559770:three_prime_UTR |
| AGCTAAAGGGAAGCGTGTTC+AGG | 0.424616 | 4_1:+58907080 | Msa0559770:CDS |
| ATCAAAGCCATATCATTTGT+TGG | 0.429517 | 4_1:+58906780 | Msa0559770:CDS |
| GCAGAATTGGCACTGGAAGC+TGG | 0.430921 | 4_1:+58906453 | Msa0559770:CDS |
| CTTCCACTGATCGCTATAAG+AGG | 0.439686 | 4_1:+58905354 | Msa0559770:CDS |
| TGGTCCAGTTATCAGCAAAC+AGG | 0.440028 | 4_1:+58907796 | Msa0559770:CDS |
| GTAAATGCTTTAGTTGCTGC+TGG | 0.441142 | 4_1:+58907255 | Msa0559770:CDS |
| TCACCTGGGTCTTTCTCTGA+TGG | 0.443595 | 4_1:-58906199 | None:intergenic |
| AAATTGCCAGATTCATATCC+TGG | 0.446066 | 4_1:-58908459 | None:intergenic |
| TAGGTCCCAGGATATGAATC+TGG | 0.446613 | 4_1:+58908453 | Msa0559770:intron |
| GACTGAGATTGAGGCTGGGC+AGG | 0.446706 | 4_1:+58908980 | Msa0559770:CDS |
| AAATTAAGGATGATACAGTT+TGG | 0.448322 | 4_1:-58905076 | None:intergenic |
| GGTGCCAGACTACTGCTTGA+TGG | 0.455239 | 4_1:+58907978 | Msa0559770:CDS |
| TTTCAGACTGAGATTGAGGC+TGG | 0.456700 | 4_1:+58908975 | Msa0559770:CDS |
| GTTGAGCCGCTGTTGAGAAA+TGG | 0.457193 | 4_1:-58905328 | None:intergenic |
| AGCTGCTGGGCAAAGGTGCA+TGG | 0.458588 | 4_1:+58907284 | Msa0559770:CDS |
| ACGGAACCTGATGCAGATCT+TGG | 0.459081 | 4_1:+58907776 | Msa0559770:CDS |
| TTTGGTGTGCAGTCTAATAT+GGG | 0.459672 | 4_1:+58907183 | Msa0559770:intron |
| GGAGCTGATACGCAGAGATA+TGG | 0.460004 | 4_1:+58905668 | Msa0559770:CDS |
| TGCTGTATCTGCAGCTAAGA+AGG | 0.460432 | 4_1:+58905584 | Msa0559770:CDS |
| TATTCAAGAGCAGCAGCTAA+AGG | 0.462757 | 4_1:+58907066 | Msa0559770:CDS |
| ATCCCAGCACAAACACCAAT+TGG | 0.470380 | 4_1:-58906094 | None:intergenic |
| ATTCAAGAGCAGCAGCTAAA+GGG | 0.475145 | 4_1:+58907067 | Msa0559770:CDS |
| AACTCATCATCCGTAGTCAA+TGG | 0.477816 | 4_1:-58905555 | None:intergenic |
| ATTTCCAACAGGTATGGAAA+TGG | 0.478187 | 4_1:+58908912 | Msa0559770:intron |
| CTACTTCTGGTGTTGCTGCT+AGG | 0.478222 | 4_1:+58908949 | Msa0559770:CDS |
| GAACCAATTGGTGTTTGTGC+TGG | 0.479759 | 4_1:+58906091 | Msa0559770:CDS |
| TGGAATGGGAACTCTACAAA+TGG | 0.483756 | 4_1:+58906018 | Msa0559770:CDS |
| AAAGCTGCGACATCCTGGTT+TGG | 0.486809 | 4_1:-58905147 | None:intergenic |
| CACTTACAGGGTTTAAAACA+TGG | 0.492044 | 4_1:-58905430 | None:intergenic |
| TATCTCTGCGTATCAGCTCC+TGG | 0.492134 | 4_1:-58905665 | None:intergenic |
| TGCACAGATTAGTTCAATCT+GGG | 0.495573 | 4_1:+58907946 | Msa0559770:CDS |
| TTATCTTCAGGCTGATAGCT+TGG | 0.496391 | 4_1:+58908787 | Msa0559770:intron |
| GAAATTTCAGACTGAGATTG+AGG | 0.497380 | 4_1:+58908971 | Msa0559770:CDS |
| GGAATGGGAACTCTACAAAT+GGG | 0.498031 | 4_1:+58906019 | Msa0559770:CDS |
| GATATCGTCATCATCACAAA+TGG | 0.501231 | 4_1:-58906760 | None:intergenic |
| ACGTGTTATGTTGAAGCTCC+AGG | 0.512753 | 4_1:+58905647 | Msa0559770:CDS |
| AGTGATATTTGATAAGATAG+TGG | 0.516177 | 4_1:-58908490 | None:intergenic |
| AATAGAAAGCTGCGACATCC+TGG | 0.517117 | 4_1:-58905152 | None:intergenic |
| ATATAATATTGAAGGAATTG+GGG | 0.517843 | 4_1:-58909849 | None:intergenic |
| TATAAGACAACTTACAACAT+TGG | 0.520923 | 4_1:-58906805 | None:intergenic |
| ATAAGGACGAATCAATTGAC+AGG | 0.521127 | 4_1:-58904977 | None:intergenic |
| TTGAGCCGCTGTTGAGAAAT+GGG | 0.523015 | 4_1:-58905327 | None:intergenic |
| GTGATATTTGATAAGATAGT+GGG | 0.524228 | 4_1:-58908489 | None:intergenic |
| GTAGTTGAATTTGATACGAA+AGG | 0.524559 | 4_1:+58904926 | Msa0559770:five_prime_UTR |
| GTAGCATCAATATTTGCGTC+TGG | 0.524576 | 4_1:-58907231 | None:intergenic |
| GTTGTGTTGTTTGTGCTACT+AGG | 0.526212 | 4_1:-58905125 | None:intergenic |
| TTTCCCATGGCTGTTACTTG+TGG | 0.526391 | 4_1:+58906157 | Msa0559770:CDS |
| AACCAATTGGTGTTTGTGCT+GGG | 0.527195 | 4_1:+58906092 | Msa0559770:CDS |
| GTTGAATTGCAGGCAAAGCA+GGG | 0.528548 | 4_1:+58909608 | Msa0559770:intron |
| TCCATTGTGGATGTTTCCCA+TGG | 0.530007 | 4_1:+58906144 | Msa0559770:CDS |
| TTGTGGGAGGTTCACAAGCA+TGG | 0.531533 | 4_1:+58907325 | Msa0559770:CDS |
| CTGGAAGCTGGTTTGCCCGA+GGG | 0.536768 | 4_1:+58906465 | Msa0559770:CDS |
| TTCACAAGTTCCATTGACTA+CGG | 0.541229 | 4_1:+58905545 | Msa0559770:CDS |
| GCTTGATGGAAGAAATATAG+TGG | 0.542955 | 4_1:+58907992 | Msa0559770:CDS |
| AATGCTTGCAGAATTGGCAC+TGG | 0.543066 | 4_1:+58906446 | Msa0559770:CDS |
| CTAAGAAGGCATTTCCATCA+TGG | 0.545903 | 4_1:+58905598 | Msa0559770:CDS |
| CAGTGGAAGGATTCAGTTGG+CGG | 0.545920 | 4_1:+58909667 | Msa0559770:CDS |
| GGTGGAACATGCTTGTGGAA+TGG | 0.548358 | 4_1:+58906003 | Msa0559770:CDS |
| CAGTGTCTTTCCTTGTTCGG+TGG | 0.551950 | 4_1:-58905833 | None:intergenic |
| ACTGGACCAAGATCTGCATC+AGG | 0.552636 | 4_1:-58907782 | None:intergenic |
| GCACAAGGAGACGTGTTTCG+TGG | 0.552683 | 4_1:+58905862 | Msa0559770:CDS |
| AACAATAACTCAGCAGTGGA+AGG | 0.553106 | 4_1:+58909654 | Msa0559770:CDS |
| ACAAACAACACAACCAAACC+AGG | 0.557350 | 4_1:+58905134 | Msa0559770:five_prime_UTR |
| CTTAATATAACCACCGAACA+AGG | 0.558754 | 4_1:+58905823 | Msa0559770:CDS |
| TACAGTGTCAGAGAACCAAT+TGG | 0.564839 | 4_1:+58906079 | Msa0559770:CDS |
| ACTGGAGTGTTACGCCATGA+TGG | 0.567542 | 4_1:-58905612 | None:intergenic |
| AACAACATTTAAGACACCCT+CGG | 0.578017 | 4_1:-58906481 | None:intergenic |
| TTTCTCATTCACTGGCAACA+AGG | 0.579842 | 4_1:+58909255 | Msa0559770:CDS |
| ACAACATTTAAGACACCCTC+GGG | 0.580734 | 4_1:-58906480 | None:intergenic |
| ATCATTGCAGGAAAGTTGAA+AGG | 0.582337 | 4_1:-58906121 | None:intergenic |
| TTATAGCGATCAGTGGAAGA+TGG | 0.582973 | 4_1:-58905350 | None:intergenic |
| GTTGTTTGTGCTACTAGGAA+AGG | 0.590229 | 4_1:-58905120 | None:intergenic |
| TCTTAAAGTAAACGCTGGAA+CGG | 0.592374 | 4_1:+58907757 | Msa0559770:CDS |
| TTCAGACTGAGATTGAGGCT+GGG | 0.595013 | 4_1:+58908976 | Msa0559770:CDS |
| TGCCGACATGGAGTGCTACA+AGG | 0.595715 | 4_1:+58908512 | Msa0559770:CDS |
| GAGGGTTCCCAATCTTATTG+GGG | 0.596758 | 4_1:+58905373 | Msa0559770:CDS |
| ACTGGAAGCTGGTTTGCCCG+AGG | 0.599261 | 4_1:+58906464 | Msa0559770:CDS |
| ATCAAATATCACTGCCGACA+TGG | 0.599985 | 4_1:+58908500 | Msa0559770:CDS |
| CAGCAGTGGAAGGATTCAGT+TGG | 0.600671 | 4_1:+58909664 | Msa0559770:CDS |
| TTGCCACAAGTAACAGCCAT+GGG | 0.601634 | 4_1:-58906160 | None:intergenic |
| GTGCATGACAAATAGGTCCC+AGG | 0.604335 | 4_1:+58908441 | Msa0559770:intron |
| TATGTTTCAAATGTTTCACA+TGG | 0.608715 | 4_1:+58906046 | Msa0559770:CDS |
| CCTCCATGAAAAGAAGAACT+GGG | 0.614002 | 4_1:-58908661 | None:intergenic |
| AATTGCCAGATTCATATCCT+GGG | 0.614209 | 4_1:-58908458 | None:intergenic |
| TTGGTGTGCAGTCTAATATG+GGG | 0.615382 | 4_1:+58907184 | Msa0559770:intron |
| TTCCACTGATCGCTATAAGA+GGG | 0.618153 | 4_1:+58905355 | Msa0559770:CDS |
| AACCCTCTTATAGCGATCAG+TGG | 0.620024 | 4_1:-58905357 | None:intergenic |
| TCAAAACAATAACTCAGCAG+TGG | 0.623442 | 4_1:+58909650 | Msa0559770:CDS |
| AAACCATCAGAGAAAGACCC+AGG | 0.627538 | 4_1:+58906196 | Msa0559770:CDS |
| TTGAATTGCAGGCAAAGCAG+GGG | 0.628248 | 4_1:+58909609 | Msa0559770:intron |
| TTCCTGCAATGATTCCATTG+TGG | 0.632608 | 4_1:+58906131 | Msa0559770:CDS |
| GTTCAATCTGGGGTCGACAG+TGG | 0.639096 | 4_1:+58907957 | Msa0559770:CDS |
| AAAGCTCTTAAAGTAAACGC+TGG | 0.643147 | 4_1:+58907752 | Msa0559770:CDS |
| ATTGCCACAAGTAACAGCCA+TGG | 0.651504 | 4_1:-58906161 | None:intergenic |
| GAATGGGAACTCTACAAATG+GGG | 0.655252 | 4_1:+58906020 | Msa0559770:CDS |
| GCCATGGGAAACATCCACAA+TGG | 0.656670 | 4_1:-58906145 | None:intergenic |
| GTTCCGAAAGCAGAGATCTG+AGG | 0.658576 | 4_1:-58905302 | None:intergenic |
| TAAGGACGAATCAATTGACA+GGG | 0.658695 | 4_1:-58904976 | None:intergenic |
| TGGCGGTAGCAAGATTAACA+TGG | 0.664280 | 4_1:+58909684 | Msa0559770:CDS |
| AGGGTTCCCAATCTTATTGG+GGG | 0.670852 | 4_1:+58905374 | Msa0559770:CDS |
| TACCTTGTAGCACTCCATGT+CGG | 0.672475 | 4_1:-58908514 | None:intergenic |
| CGAACAAGGAAAGACACTGA+AGG | 0.677513 | 4_1:+58905837 | Msa0559770:CDS |
| TGATATTTGATAAGATAGTG+GGG | 0.681135 | 4_1:-58908488 | None:intergenic |
| AGCCGCTGTTGAGAAATGGG+AGG | 0.683940 | 4_1:-58905324 | None:intergenic |
| TGGTGTGCAGTCTAATATGG+GGG | 0.686626 | 4_1:+58907185 | Msa0559770:intron |
| AACCTCCCATTTCTCAACAG+CGG | 0.687198 | 4_1:+58905322 | Msa0559770:CDS |
| AATGGGAACTCTACAAATGG+GGG | 0.689460 | 4_1:+58906021 | Msa0559770:CDS |
| AGGACGAATCAATTGACAGG+GGG | 0.690940 | 4_1:-58904974 | None:intergenic |
| GAGGTGGTGGAACATGCTTG+TGG | 0.694713 | 4_1:+58905998 | Msa0559770:intron |
| AAGACACTGAAGGATGCACA+AGG | 0.696863 | 4_1:+58905847 | Msa0559770:CDS |
| GCACAGATTAGTTCAATCTG+GGG | 0.697298 | 4_1:+58907947 | Msa0559770:CDS |
| GGAGCTTCAACATAACACGT+TGG | 0.699352 | 4_1:-58905644 | None:intergenic |
| AAGGACGAATCAATTGACAG+GGG | 0.739234 | 4_1:-58904975 | None:intergenic |
| TCGCAGCTTTCTATTCAACG+AGG | 0.767158 | 4_1:+58905160 | Msa0559770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATTAAAAAGAAATAA+TGG | + | chr4_1:58904858-58904877 | Msa0559770:five_prime_UTR | 10.0% |
| !!! | TAGTTGAATTTTTTTTTTTT+TGG | + | chr4_1:58904894-58904913 | Msa0559770:intron | 10.0% |
| !!! | TTTAATTTTATATCATTTAG+AGG | + | chr4_1:58905979-58905998 | Msa0559770:intron | 10.0% |
| !!! | AATCTTTTGTTTTTTTTAAA+CGG | - | chr4_1:58907568-58907587 | None:intergenic | 10.0% |
| !! | AAAATAATCTATCATTATAT+GGG | - | chr4_1:58908358-58908377 | None:intergenic | 10.0% |
| !! | ATTTATTTGTTTAAATACAT+TGG | + | chr4_1:58909357-58909376 | Msa0559770:intron | 10.0% |
| !!! | TGTATAATTTTTTTCTATTT+TGG | + | chr4_1:58909749-58909768 | Msa0559770:three_prime_UTR | 10.0% |
| !!! | GAAATAATGGAATAAATAAT+AGG | + | chr4_1:58904871-58904890 | Msa0559770:intron | 15.0% |
| !!! | TTTTTTTTTTTGGTTACAAT+AGG | + | chr4_1:58904904-58904923 | Msa0559770:intron | 15.0% |
| !! | TACTAAAAATACAACATAAA+GGG | - | chr4_1:58906998-58907017 | None:intergenic | 15.0% |
| !! | ATACTAAAAATACAACATAA+AGG | - | chr4_1:58906999-58907018 | None:intergenic | 15.0% |
| !! | TAATAAATCTAGATCAATTT+CGG | - | chr4_1:58907452-58907471 | None:intergenic | 15.0% |
| !!! | TTTTATCATAATTCCATTAT+TGG | + | chr4_1:58907519-58907538 | Msa0559770:intron | 15.0% |
| !! | TCATTCAAAAATTATATCTA+CGG | + | chr4_1:58907841-58907860 | Msa0559770:intron | 15.0% |
| !! | AGATAAAATAAAATCAATCA+TGG | + | chr4_1:58908256-58908275 | Msa0559770:intron | 15.0% |
| !! | CAAAATAATCTATCATTATA+TGG | - | chr4_1:58908359-58908378 | None:intergenic | 15.0% |
| !! | AATATAATATTGAAGGAATT+GGG | - | chr4_1:58909853-58909872 | None:intergenic | 15.0% |
| !! | AAATATAATATTGAAGGAAT+TGG | - | chr4_1:58909854-58909873 | None:intergenic | 15.0% |
| !! | TTTGGAAAATATAATATTGA+AGG | - | chr4_1:58909860-58909879 | None:intergenic | 15.0% |
| !!! | ATATTATATTTTCCAAAATG+AGG | + | chr4_1:58909863-58909882 | Msa0559770:three_prime_UTR | 15.0% |
| !!! | TATTATATTTTCCAAAATGA+GGG | + | chr4_1:58909864-58909883 | Msa0559770:three_prime_UTR | 15.0% |
| !! | GTTTCGGTTTATTATATATA+AGG | - | chr4_1:58904997-58905016 | None:intergenic | 20.0% |
| !!! | ATAGTTATGCTCATAATTTT+TGG | + | chr4_1:58905936-58905955 | Msa0559770:intron | 20.0% |
| !!! | AATTTTATATCATTTAGAGG+TGG | + | chr4_1:58905982-58906001 | Msa0559770:intron | 20.0% |
| !!! | TGTAACATTATAATGGAAAA+AGG | + | chr4_1:58906273-58906292 | Msa0559770:intron | 20.0% |
| !!! | GTAACATTATAATGGAAAAA+GGG | + | chr4_1:58906274-58906293 | Msa0559770:intron | 20.0% |
| !! | CTTAATATAAAAAGAGATGA+TGG | - | chr4_1:58906524-58906543 | None:intergenic | 20.0% |
| !! | TTAGAAAGATATATAGAAGA+GGG | + | chr4_1:58906933-58906952 | Msa0559770:intron | 20.0% |
| !!! | ATTTTCTGCATAATCATATA+GGG | + | chr4_1:58907490-58907509 | Msa0559770:intron | 20.0% |
| !!! | TTTACTGATTATACCAATAA+TGG | - | chr4_1:58907535-58907554 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTTTTAAACGGA+AGG | - | chr4_1:58907564-58907583 | None:intergenic | 20.0% |
| !!! | TAATCAAAATCAATTTTCCA+AGG | - | chr4_1:58907667-58907686 | None:intergenic | 20.0% |
| !! | ATGTTTCTTAAAATTCTTAC+CGG | + | chr4_1:58907902-58907921 | Msa0559770:intron | 20.0% |
| !!! | TTTATTTTATCTTATCCTGT+CGG | - | chr4_1:58908248-58908267 | None:intergenic | 20.0% |
| !! | TGAAAACAAATAAGATTCTA+AGG | - | chr4_1:58908705-58908724 | None:intergenic | 20.0% |
| !!! | TCTGTTTTATTTTTATCTTC+AGG | + | chr4_1:58908775-58908794 | Msa0559770:intron | 20.0% |
| !! | ATATATAGCTGTTTAACATA+AGG | - | chr4_1:58908875-58908894 | None:intergenic | 20.0% |
| !! | ACAATACATTATTCTATTTG+TGG | - | chr4_1:58909160-58909179 | None:intergenic | 20.0% |
| !!! | AATGATAATGATACTCATTA+TGG | + | chr4_1:58909182-58909201 | Msa0559770:intron | 20.0% |
| !!! | TTTTTCTTATGATATGTTGT+AGG | + | chr4_1:58909564-58909583 | Msa0559770:intron | 20.0% |
| !! | ATATAATATTGAAGGAATTG+GGG | - | chr4_1:58909852-58909871 | None:intergenic | 20.0% |
| !!! | TAAAATATAAACCCTCATTT+TGG | - | chr4_1:58909878-58909897 | None:intergenic | 20.0% |
| !!! | AAAATGAGGGTTTATATTTT+AGG | + | chr4_1:58909877-58909896 | Msa0559770:three_prime_UTR | 20.0% |
| !! | GGATATATTATTTATGGATT+CGG | - | chr4_1:58909905-58909924 | None:intergenic | 20.0% |
| ! | AAATTAAGGATGATACAGTT+TGG | - | chr4_1:58905079-58905098 | None:intergenic | 25.0% |
| ! | TATGGTGTTTGAAGAAATTA+AGG | - | chr4_1:58905093-58905112 | None:intergenic | 25.0% |
| ! | GTAAGAAAAAAACACTTACA+GGG | - | chr4_1:58905445-58905464 | None:intergenic | 25.0% |
| ! | TGTAAGAAAAAAACACTTAC+AGG | - | chr4_1:58905446-58905465 | None:intergenic | 25.0% |
| !!! | TATGTTTCGACTTTGTTTTT+AGG | + | chr4_1:58905789-58905808 | Msa0559770:intron | 25.0% |
| ! | TATGTTTCAAATGTTTCACA+TGG | + | chr4_1:58906046-58906065 | Msa0559770:CDS | 25.0% |
| ! | CAGATTGAGAAAATAATACA+AGG | - | chr4_1:58906245-58906264 | None:intergenic | 25.0% |
| !! | CTTGTATTATTTTCTCAATC+TGG | + | chr4_1:58906243-58906262 | Msa0559770:intron | 25.0% |
| !! | TACAGCAAAGTTTGTTTAAA+AGG | - | chr4_1:58906337-58906356 | None:intergenic | 25.0% |
| ! | AATACAATGAAAACACCAAA+TGG | - | chr4_1:58906608-58906627 | None:intergenic | 25.0% |
| ! | TAAATGTGAAAGTTGTTCAA+AGG | + | chr4_1:58906634-58906653 | Msa0559770:intron | 25.0% |
| ! | AAATGTGAAAGTTGTTCAAA+GGG | + | chr4_1:58906635-58906654 | Msa0559770:intron | 25.0% |
| ! | TATAAGACAACTTACAACAT+TGG | - | chr4_1:58906808-58906827 | None:intergenic | 25.0% |
| !! | TTCTGACAAGATTTCTTTTA+AGG | - | chr4_1:58906879-58906898 | None:intergenic | 25.0% |
| ! | GTTAGAAAGATATATAGAAG+AGG | + | chr4_1:58906932-58906951 | Msa0559770:intron | 25.0% |
| !!! | GGTAATAGTTTGCAAAATTT+TGG | - | chr4_1:58906974-58906993 | None:intergenic | 25.0% |
| ! | TAAAAATACAACATAAAGGG+AGG | - | chr4_1:58906995-58907014 | None:intergenic | 25.0% |
| ! | GAAATCCCTATTTGTATTAA+AGG | + | chr4_1:58907029-58907048 | Msa0559770:intron | 25.0% |
| ! | TATATTAACCAATTTCACTG+AGG | - | chr4_1:58907127-58907146 | None:intergenic | 25.0% |
| ! | AACATGTAATGATATGAAGT+TGG | + | chr4_1:58907147-58907166 | Msa0559770:intron | 25.0% |
| ! | GTTGGCCAATTAATAAAATT+TGG | + | chr4_1:58907165-58907184 | Msa0559770:intron | 25.0% |
| !! | GCACACCAAATTTTATTAAT+TGG | - | chr4_1:58907173-58907192 | None:intergenic | 25.0% |
| ! | TGATCTAGATTTATTAAACG+TGG | + | chr4_1:58907456-58907475 | Msa0559770:intron | 25.0% |
| !! | CATTTTCTGCATAATCATAT+AGG | + | chr4_1:58907489-58907508 | Msa0559770:intron | 25.0% |
| !!! | TTTTTTTTATCTTTTGGCCT+TGG | + | chr4_1:58907647-58907666 | Msa0559770:intron | 25.0% |
| ! | TACAATAACTCAGTTGTAAA+GGG | - | chr4_1:58908039-58908058 | None:intergenic | 25.0% |
| ! | ATACAATAACTCAGTTGTAA+AGG | - | chr4_1:58908040-58908059 | None:intergenic | 25.0% |
| ! | CAATAGTAACTTTATTCTAC+AGG | + | chr4_1:58908301-58908320 | Msa0559770:intron | 25.0% |
| ! | ATCATTATATGGGAAAACAA+AGG | - | chr4_1:58908348-58908367 | None:intergenic | 25.0% |
| ! | GATAAGCAATCCTTAAAATT+GGG | - | chr4_1:58908412-58908431 | None:intergenic | 25.0% |
| ! | TGATAAGCAATCCTTAAAAT+TGG | - | chr4_1:58908413-58908432 | None:intergenic | 25.0% |
| ! | TGATATTTGATAAGATAGTG+GGG | - | chr4_1:58908491-58908510 | None:intergenic | 25.0% |
| ! | GTGATATTTGATAAGATAGT+GGG | - | chr4_1:58908492-58908511 | None:intergenic | 25.0% |
| ! | AGTGATATTTGATAAGATAG+TGG | - | chr4_1:58908493-58908512 | None:intergenic | 25.0% |
| !!! | GTTTTTGTTGATAATGCTTA+TGG | - | chr4_1:58908819-58908838 | None:intergenic | 25.0% |
| ! | ACAAGTATTTATCAAACACA+CGG | + | chr4_1:58908837-58908856 | Msa0559770:intron | 25.0% |
| ! | GGTAAATATATACTACTTCT+TGG | + | chr4_1:58909001-58909020 | Msa0559770:intron | 25.0% |
| ! | AATATATACTACTTCTTGGA+AGG | + | chr4_1:58909005-58909024 | Msa0559770:intron | 25.0% |
| ! | ATGCAATAATGCAATATGAT+TGG | - | chr4_1:58909097-58909116 | None:intergenic | 25.0% |
| ! | AATCATATTGCATTATTGCA+TGG | + | chr4_1:58909096-58909115 | Msa0559770:intron | 25.0% |
| ! | TTTGTTTAAATACATTGGAG+AGG | + | chr4_1:58909362-58909381 | Msa0559770:intron | 25.0% |
| ! | TTGTTTAAATACATTGGAGA+GGG | + | chr4_1:58909363-58909382 | Msa0559770:intron | 25.0% |
| ! | CAGTTGTAAAATGATCATTA+AGG | - | chr4_1:58909414-58909433 | None:intergenic | 25.0% |
| !! | AATGATCATTTTACAACTGT+TGG | + | chr4_1:58909415-58909434 | Msa0559770:intron | 25.0% |
| ! | AAATTATACACATGACTTTC+TGG | - | chr4_1:58909739-58909758 | None:intergenic | 25.0% |
| ! | ACTCTTCAATAAAATGTCAT+AGG | + | chr4_1:58909781-58909800 | Msa0559770:three_prime_UTR | 25.0% |
| ! | AAGCAGAAAAGAAAAACAAA+AGG | - | chr4_1:58909824-58909843 | None:intergenic | 25.0% |
| GTAGTTGAATTTGATACGAA+AGG | + | chr4_1:58904926-58904945 | Msa0559770:five_prime_UTR | 30.0% | |
| GAATTTGATACGAAAGGATT+TGG | + | chr4_1:58904932-58904951 | Msa0559770:five_prime_UTR | 30.0% | |
| ACTAGGAAAGGAAAAGAATA+TGG | - | chr4_1:58905111-58905130 | None:intergenic | 30.0% | |
| TATTTGTCTATTCCGATCAT+AGG | + | chr4_1:58905506-58905525 | Msa0559770:intron | 30.0% | |
| TTAGGTCGGTCATTAAAATA+TGG | + | chr4_1:58905886-58905905 | Msa0559770:intron | 30.0% | |
| TTTATATCATTTAGAGGTGG+TGG | + | chr4_1:58905985-58906004 | Msa0559770:intron | 30.0% | |
| AGCGTAGTGTAACATTATAA+TGG | + | chr4_1:58906266-58906285 | Msa0559770:intron | 30.0% | |
| !! | CTCTAACATCGTTTTTCATT+CGG | + | chr4_1:58906298-58906317 | Msa0559770:intron | 30.0% |
| ! | TAAACAAACTTTGCTGTAGT+TGG | + | chr4_1:58906339-58906358 | Msa0559770:intron | 30.0% |
| ! | AAACAAACTTTGCTGTAGTT+GGG | + | chr4_1:58906340-58906359 | Msa0559770:intron | 30.0% |
| TTTATGCTAAACCATCTAGT+GGG | + | chr4_1:58906372-58906391 | Msa0559770:intron | 30.0% | |
| !! | TGATATTTGTTGTTTGTTCC+AGG | + | chr4_1:58906414-58906433 | Msa0559770:intron | 30.0% |
| TTCTATAATGCTTGCAGAAT+TGG | + | chr4_1:58906440-58906459 | Msa0559770:CDS | 30.0% | |
| TAGTGAGTATCAAAAGAAAC+AGG | - | chr4_1:58906559-58906578 | None:intergenic | 30.0% | |
| TCACTAATTAAATGTGCTCA+TGG | + | chr4_1:58906573-58906592 | Msa0559770:intron | 30.0% | |
| CACTAATTAAATGTGCTCAT+GGG | + | chr4_1:58906574-58906593 | Msa0559770:intron | 30.0% | |
| !!! | ATTGTGCTTTGTTTTTCTCA+CGG | + | chr4_1:58906697-58906716 | Msa0559770:intron | 30.0% |
| GGATTGATATCCTTGATTAT+TGG | + | chr4_1:58906718-58906737 | Msa0559770:intron | 30.0% | |
| ATCAAAGCCATATCATTTGT+TGG | + | chr4_1:58906780-58906799 | Msa0559770:CDS | 30.0% | |
| !!! | TTCTTTTAAGGTCACAAAAG+AGG | - | chr4_1:58906867-58906886 | None:intergenic | 30.0% |
| TCTAACTAAGCACATTCAAA+CGG | - | chr4_1:58906918-58906937 | None:intergenic | 30.0% | |
| TCCAGCCTTTAATACAAATA+GGG | - | chr4_1:58907037-58907056 | None:intergenic | 30.0% | |
| TTCCAGCCTTTAATACAAAT+AGG | - | chr4_1:58907038-58907057 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCCTCAGTGAAAT+TGG | + | chr4_1:58907116-58907135 | Msa0559770:intron | 30.0% |
| CAGTTGTAAAGGGAAATTAA+GGG | - | chr4_1:58908029-58908048 | None:intergenic | 30.0% | |
| TCAGTTGTAAAGGGAAATTA+AGG | - | chr4_1:58908030-58908049 | None:intergenic | 30.0% | |
| ! | TGCGTATAAATTGATTCACT+AGG | + | chr4_1:58908110-58908129 | Msa0559770:intron | 30.0% |
| AACCATGTATCTAATGCATT+GGG | - | chr4_1:58908180-58908199 | None:intergenic | 30.0% | |
| AAACCATGTATCTAATGCAT+TGG | - | chr4_1:58908181-58908200 | None:intergenic | 30.0% | |
| TAATCAAAGGAGAGAAAACA+AGG | - | chr4_1:58908220-58908239 | None:intergenic | 30.0% | |
| AAAATCAATCATGGCTAAAC+AGG | + | chr4_1:58908265-58908284 | Msa0559770:intron | 30.0% | |
| TAAAATTGGGCAGAAGAAAT+GGG | - | chr4_1:58908399-58908418 | None:intergenic | 30.0% | |
| TTAAAATTGGGCAGAAGAAA+TGG | - | chr4_1:58908400-58908419 | None:intergenic | 30.0% | |
| ! | ATTTCTTCTGCCCAATTTTA+AGG | + | chr4_1:58908399-58908418 | Msa0559770:intron | 30.0% |
| ! | TATGAATCTGGCAATTTTGT+TGG | + | chr4_1:58908465-58908484 | Msa0559770:CDS | 30.0% |
| GCTTCTATATTTACTACTTC+TGG | + | chr4_1:58908936-58908955 | Msa0559770:CDS | 30.0% | |
| TTCCAACCAGTATATGAATT+AGG | + | chr4_1:58909055-58909074 | Msa0559770:intron | 30.0% | |
| ACAACTCCTAATTCATATAC+TGG | - | chr4_1:58909064-58909083 | None:intergenic | 30.0% | |
| ATGATACTCATTATGGATCT+TGG | + | chr4_1:58909189-58909208 | Msa0559770:intron | 30.0% | |
| TGTTTAAATACATTGGAGAG+GGG | + | chr4_1:58909364-58909383 | Msa0559770:intron | 30.0% | |
| !! | ATTTTACAACTGTTGGTGAA+AGG | + | chr4_1:58909422-58909441 | Msa0559770:intron | 30.0% |
| !! | GAGTTTGACTTGTAACTTTA+AGG | - | chr4_1:58909462-58909481 | None:intergenic | 30.0% |
| GATTTGAATTGTTGAATTGC+AGG | + | chr4_1:58909598-58909617 | Msa0559770:intron | 30.0% | |
| TAAGGACGAATCAATTGACA+GGG | - | chr4_1:58904979-58904998 | None:intergenic | 35.0% | |
| ATAAGGACGAATCAATTGAC+AGG | - | chr4_1:58904980-58904999 | None:intergenic | 35.0% | |
| ! | ATAATCTGAAGCAGCTGTTT+CGG | - | chr4_1:58905013-58905032 | None:intergenic | 35.0% |
| ! | CACTTACAGGGTTTAAAACA+TGG | - | chr4_1:58905433-58905452 | None:intergenic | 35.0% |
| ! | TTCACAAGTTCCATTGACTA+CGG | + | chr4_1:58905545-58905564 | Msa0559770:CDS | 35.0% |
| CTTAATATAACCACCGAACA+AGG | + | chr4_1:58905823-58905842 | Msa0559770:CDS | 35.0% | |
| ATCATTGCAGGAAAGTTGAA+AGG | - | chr4_1:58906124-58906143 | None:intergenic | 35.0% | |
| CTTTATGCTAAACCATCTAG+TGG | + | chr4_1:58906371-58906390 | Msa0559770:intron | 35.0% | |
| ! | AACAACATTTAAGACACCCT+CGG | - | chr4_1:58906484-58906503 | None:intergenic | 35.0% |
| GGTGTCTTAAATGTTGTTCA+TGG | + | chr4_1:58906486-58906505 | Msa0559770:CDS | 35.0% | |
| ! | AAAGAGATGATGGCATACAT+GGG | - | chr4_1:58906514-58906533 | None:intergenic | 35.0% |
| ! | AAAAGAGATGATGGCATACA+TGG | - | chr4_1:58906515-58906534 | None:intergenic | 35.0% |
| ! | TATCCTTGATTATTGGTGAC+AGG | + | chr4_1:58906725-58906744 | Msa0559770:intron | 35.0% |
| GATATCGTCATCATCACAAA+TGG | - | chr4_1:58906763-58906782 | None:intergenic | 35.0% | |
| ATTGGAGCCAACAAATGATA+TGG | - | chr4_1:58906790-58906809 | None:intergenic | 35.0% | |
| TCCCTATTTGTATTAAAGGC+TGG | + | chr4_1:58907033-58907052 | Msa0559770:intron | 35.0% | |
| !! | ATTTGGTGTGCAGTCTAATA+TGG | + | chr4_1:58907182-58907201 | Msa0559770:intron | 35.0% |
| ! | TTTGGTGTGCAGTCTAATAT+GGG | + | chr4_1:58907183-58907202 | Msa0559770:intron | 35.0% |
| ! | CATGACGATTGCATGATTTT+TGG | - | chr4_1:58907211-58907230 | None:intergenic | 35.0% |
| AACACAGAAATCGTGGTAAA+CGG | - | chr4_1:58907381-58907400 | None:intergenic | 35.0% | |
| !!! | CTGTGTTGGCTTTTTTTACT+TGG | + | chr4_1:58907394-58907413 | Msa0559770:intron | 35.0% |
| TTCTGCATAATCATATAGGG+TGG | + | chr4_1:58907493-58907512 | Msa0559770:intron | 35.0% | |
| CTAGAGAAAATACCTTGTGA+CGG | + | chr4_1:58907590-58907609 | Msa0559770:intron | 35.0% | |
| ! | AGCGTTTACTTTAAGAGCTT+TGG | - | chr4_1:58907753-58907772 | None:intergenic | 35.0% |
| AAAGCTCTTAAAGTAAACGC+TGG | + | chr4_1:58907752-58907771 | Msa0559770:CDS | 35.0% | |
| TCTTAAAGTAAACGCTGGAA+CGG | + | chr4_1:58907757-58907776 | Msa0559770:CDS | 35.0% | |
| ! | TGCACAGATTAGTTCAATCT+GGG | + | chr4_1:58907946-58907965 | Msa0559770:CDS | 35.0% |
| GCTTGATGGAAGAAATATAG+TGG | + | chr4_1:58907992-58908011 | Msa0559770:CDS | 35.0% | |
| ACCATGTATCTAATGCATTG+GGG | - | chr4_1:58908179-58908198 | None:intergenic | 35.0% | |
| AAAATTGGGCAGAAGAAATG+GGG | - | chr4_1:58908398-58908417 | None:intergenic | 35.0% | |
| TTCATACGTGCATGACAAAT+AGG | + | chr4_1:58908434-58908453 | Msa0559770:intron | 35.0% | |
| AATTGCCAGATTCATATCCT+GGG | - | chr4_1:58908461-58908480 | None:intergenic | 35.0% | |
| AAATTGCCAGATTCATATCC+TGG | - | chr4_1:58908462-58908481 | None:intergenic | 35.0% | |
| CTTACCAATCTCAAATCTCA+AGG | + | chr4_1:58908541-58908560 | Msa0559770:intron | 35.0% | |
| ! | GAAACCTTGAGATTTGAGAT+TGG | - | chr4_1:58908548-58908567 | None:intergenic | 35.0% |
| ACATCAACTCTCTATTCTGA+AGG | - | chr4_1:58908584-58908603 | None:intergenic | 35.0% | |
| GTCTTTAACATTACACACAC+AGG | + | chr4_1:58908625-58908644 | Msa0559770:intron | 35.0% | |
| TTTAACATTACACACACAGG+AGG | + | chr4_1:58908628-58908647 | Msa0559770:intron | 35.0% | |
| CTTACTCTATCATTTCCAAC+AGG | + | chr4_1:58908901-58908920 | Msa0559770:intron | 35.0% | |
| TCTATCATTTCCAACAGGTA+TGG | + | chr4_1:58908906-58908925 | Msa0559770:intron | 35.0% | |
| ATTTCCAACAGGTATGGAAA+TGG | + | chr4_1:58908912-58908931 | Msa0559770:intron | 35.0% | |
| GAAATTTCAGACTGAGATTG+AGG | + | chr4_1:58908971-58908990 | Msa0559770:CDS | 35.0% | |
| CTCCTAATTCATATACTGGT+TGG | - | chr4_1:58909060-58909079 | None:intergenic | 35.0% | |
| GTGAATGAGAAAAATGGCAA+AGG | - | chr4_1:58909247-58909266 | None:intergenic | 35.0% | |
| !!! | TTGCCATTTTTCTCATTCAC+TGG | + | chr4_1:58909247-58909266 | Msa0559770:CDS | 35.0% |
| TTGCCAGTGAATGAGAAAAA+TGG | - | chr4_1:58909253-58909272 | None:intergenic | 35.0% | |
| GTTTAAATACATTGGAGAGG+GGG | + | chr4_1:58909365-58909384 | Msa0559770:intron | 35.0% | |
| TTTAAATACATTGGAGAGGG+GGG | + | chr4_1:58909366-58909385 | Msa0559770:intron | 35.0% | |
| CAAGTCAAACTCTTACTACT+AGG | + | chr4_1:58909470-58909489 | Msa0559770:intron | 35.0% | |
| TCAAAACAATAACTCAGCAG+TGG | + | chr4_1:58909650-58909669 | Msa0559770:CDS | 35.0% | |
| !! | GATCAAGATTTTTGAGAGGT+TGG | - | chr4_1:58909715-58909734 | None:intergenic | 35.0% |
| !! | TGGTGATCAAGATTTTTGAG+AGG | - | chr4_1:58909719-58909738 | None:intergenic | 35.0% |
| AAGGACGAATCAATTGACAG+GGG | - | chr4_1:58904978-58904997 | None:intergenic | 40.0% | |
| ! | GTTGTTTGTGCTACTAGGAA+AGG | - | chr4_1:58905123-58905142 | None:intergenic | 40.0% |
| !! | GTTGTGTTGTTTGTGCTACT+AGG | - | chr4_1:58905128-58905147 | None:intergenic | 40.0% |
| ACAAACAACACAACCAAACC+AGG | + | chr4_1:58905134-58905153 | Msa0559770:five_prime_UTR | 40.0% | |
| TGATCGATGATCGTGTATCT+GGG | - | chr4_1:58905231-58905250 | None:intergenic | 40.0% | |
| TTATAGCGATCAGTGGAAGA+TGG | - | chr4_1:58905353-58905372 | None:intergenic | 40.0% | |
| TTCCACTGATCGCTATAAGA+GGG | + | chr4_1:58905355-58905374 | Msa0559770:CDS | 40.0% | |
| AAGAGGGTTCCCAATCTTAT+TGG | + | chr4_1:58905371-58905390 | Msa0559770:CDS | 40.0% | |
| AGAGGGTTCCCAATCTTATT+GGG | + | chr4_1:58905372-58905391 | Msa0559770:CDS | 40.0% | |
| AACCTTCCCCCAATAAGATT+GGG | - | chr4_1:58905383-58905402 | None:intergenic | 40.0% | |
| AAACCTTCCCCCAATAAGAT+TGG | - | chr4_1:58905384-58905403 | None:intergenic | 40.0% | |
| AACTCATCATCCGTAGTCAA+TGG | - | chr4_1:58905558-58905577 | None:intergenic | 40.0% | |
| !! | CTAAGAAGGCATTTCCATCA+TGG | + | chr4_1:58905598-58905617 | Msa0559770:CDS | 40.0% |
| CTTCAGTGTCTTTCCTTGTT+CGG | - | chr4_1:58905839-58905858 | None:intergenic | 40.0% | |
| TGGAATGGGAACTCTACAAA+TGG | + | chr4_1:58906018-58906037 | Msa0559770:CDS | 40.0% | |
| GGAATGGGAACTCTACAAAT+GGG | + | chr4_1:58906019-58906038 | Msa0559770:CDS | 40.0% | |
| GAATGGGAACTCTACAAATG+GGG | + | chr4_1:58906020-58906039 | Msa0559770:CDS | 40.0% | |
| AATGGGAACTCTACAAATGG+GGG | + | chr4_1:58906021-58906040 | Msa0559770:CDS | 40.0% | |
| TACAGTGTCAGAGAACCAAT+TGG | + | chr4_1:58906079-58906098 | Msa0559770:CDS | 40.0% | |
| ! | AACCAATTGGTGTTTGTGCT+GGG | + | chr4_1:58906092-58906111 | Msa0559770:CDS | 40.0% |
| TTCCTGCAATGATTCCATTG+TGG | + | chr4_1:58906131-58906150 | Msa0559770:CDS | 40.0% | |
| ATCCACAATGGAATCATTGC+AGG | - | chr4_1:58906136-58906155 | None:intergenic | 40.0% | |
| ATAGAAAGCCAACATCACCT+GGG | - | chr4_1:58906216-58906235 | None:intergenic | 40.0% | |
| ! | ACAACATTTAAGACACCCTC+GGG | - | chr4_1:58906483-58906502 | None:intergenic | 40.0% |
| ! | TCATGGGCTCTTTTTCCATT+TGG | + | chr4_1:58906590-58906609 | Msa0559770:intron | 40.0% |
| CATCCTGTCACCAATAATCA+AGG | - | chr4_1:58906731-58906750 | None:intergenic | 40.0% | |
| TATTCAAGAGCAGCAGCTAA+AGG | + | chr4_1:58907066-58907085 | Msa0559770:CDS | 40.0% | |
| ATTCAAGAGCAGCAGCTAAA+GGG | + | chr4_1:58907067-58907086 | Msa0559770:CDS | 40.0% | |
| TTGGTGTGCAGTCTAATATG+GGG | + | chr4_1:58907184-58907203 | Msa0559770:intron | 40.0% | |
| GTAGCATCAATATTTGCGTC+TGG | - | chr4_1:58907234-58907253 | None:intergenic | 40.0% | |
| GTAAATGCTTTAGTTGCTGC+TGG | + | chr4_1:58907255-58907274 | Msa0559770:CDS | 40.0% | |
| !!! | TCTCAGCACAGTTGTTTTTG+TGG | + | chr4_1:58907308-58907327 | Msa0559770:CDS | 40.0% |
| !!! | CTCAGCACAGTTGTTTTTGT+GGG | + | chr4_1:58907309-58907328 | Msa0559770:CDS | 40.0% |
| GTTTACCACGATTTCTGTGT+TGG | + | chr4_1:58907380-58907399 | Msa0559770:intron | 40.0% | |
| AAAAGCCAACACAGAAATCG+TGG | - | chr4_1:58907388-58907407 | None:intergenic | 40.0% | |
| ATGAATACATCTCCGTCACA+AGG | - | chr4_1:58907605-58907624 | None:intergenic | 40.0% | |
| ! | TGTGACGGAGATGTATTCAT+TGG | + | chr4_1:58907605-58907624 | Msa0559770:intron | 40.0% |
| ATCCTCCACAATATTTGTGC+AGG | + | chr4_1:58907705-58907724 | Msa0559770:intron | 40.0% | |
| TCCTCCACAATATTTGTGCA+GGG | + | chr4_1:58907706-58907725 | Msa0559770:intron | 40.0% | |
| ! | CAAACCTGTTTGCTGATAAC+TGG | - | chr4_1:58907803-58907822 | None:intergenic | 40.0% |
| ! | ACAGGTTTGTTTACTCTCTC+TGG | + | chr4_1:58907814-58907833 | Msa0559770:intron | 40.0% |
| !! | AAAATTCTTACCGGCTTCAC+AGG | + | chr4_1:58907911-58907930 | Msa0559770:intron | 40.0% |
| ! | GTGCACAGATTAGTTCAATC+TGG | + | chr4_1:58907945-58907964 | Msa0559770:CDS | 40.0% |
| ! | GCACAGATTAGTTCAATCTG+GGG | + | chr4_1:58907947-58907966 | Msa0559770:CDS | 40.0% |
| TCCCCAATGCATTAGATACA+TGG | + | chr4_1:58908175-58908194 | Msa0559770:intron | 40.0% | |
| AAATTGGGCAGAAGAAATGG+GGG | - | chr4_1:58908397-58908416 | None:intergenic | 40.0% | |
| ATCAAATATCACTGCCGACA+TGG | + | chr4_1:58908500-58908519 | Msa0559770:CDS | 40.0% | |
| ! | CACACACAGGAGGAAATTTT+TGG | + | chr4_1:58908638-58908657 | Msa0559770:intron | 40.0% |
| CCTCCATGAAAAGAAGAACT+GGG | - | chr4_1:58908664-58908683 | None:intergenic | 40.0% | |
| ACCTCCATGAAAAGAAGAAC+TGG | - | chr4_1:58908665-58908684 | None:intergenic | 40.0% | |
| ACACAAATGTCTGTCTCATC+TGG | - | chr4_1:58908735-58908754 | None:intergenic | 40.0% | |
| GATGAGACAGACATTTGTGT+TGG | + | chr4_1:58908735-58908754 | Msa0559770:intron | 40.0% | |
| TTATCTTCAGGCTGATAGCT+TGG | + | chr4_1:58908787-58908806 | Msa0559770:intron | 40.0% | |
| TACAGAGAATCTAGTCCATG+CGG | - | chr4_1:58909114-58909133 | None:intergenic | 40.0% | |
| AATGGCAAAGGAACTGGAAT+AGG | - | chr4_1:58909235-58909254 | None:intergenic | 40.0% | |
| GAGAAAAATGGCAAAGGAAC+TGG | - | chr4_1:58909241-58909260 | None:intergenic | 40.0% | |
| TTTCTCATTCACTGGCAACA+AGG | + | chr4_1:58909255-58909274 | Msa0559770:CDS | 40.0% | |
| AACAATAACTCAGCAGTGGA+AGG | + | chr4_1:58909654-58909673 | Msa0559770:CDS | 40.0% | |
| AGGACGAATCAATTGACAGG+GGG | - | chr4_1:58904977-58904996 | None:intergenic | 45.0% | |
| AATAGAAAGCTGCGACATCC+TGG | - | chr4_1:58905155-58905174 | None:intergenic | 45.0% | |
| TCGCAGCTTTCTATTCAACG+AGG | + | chr4_1:58905160-58905179 | Msa0559770:CDS | 45.0% | |
| GTGATCGATGATCGTGTATC+TGG | - | chr4_1:58905232-58905251 | None:intergenic | 45.0% | |
| ATGCCTCAGATCTCTGCTTT+CGG | + | chr4_1:58905299-58905318 | Msa0559770:CDS | 45.0% | |
| AACCTCCCATTTCTCAACAG+CGG | + | chr4_1:58905322-58905341 | Msa0559770:CDS | 45.0% | |
| TTGAGCCGCTGTTGAGAAAT+GGG | - | chr4_1:58905330-58905349 | None:intergenic | 45.0% | |
| CTTCCACTGATCGCTATAAG+AGG | + | chr4_1:58905354-58905373 | Msa0559770:CDS | 45.0% | |
| AACCCTCTTATAGCGATCAG+TGG | - | chr4_1:58905360-58905379 | None:intergenic | 45.0% | |
| GAGGGTTCCCAATCTTATTG+GGG | + | chr4_1:58905373-58905392 | Msa0559770:CDS | 45.0% | |
| AGGGTTCCCAATCTTATTGG+GGG | + | chr4_1:58905374-58905393 | Msa0559770:CDS | 45.0% | |
| TTCCCAATCTTATTGGGGGA+AGG | + | chr4_1:58905378-58905397 | Msa0559770:CDS | 45.0% | |
| CTTCTTGTGTCGCCTATGAT+CGG | - | chr4_1:58905521-58905540 | None:intergenic | 45.0% | |
| TGCTGTATCTGCAGCTAAGA+AGG | + | chr4_1:58905584-58905603 | Msa0559770:CDS | 45.0% | |
| GGAGCTTCAACATAACACGT+TGG | - | chr4_1:58905647-58905666 | None:intergenic | 45.0% | |
| ACGTGTTATGTTGAAGCTCC+AGG | + | chr4_1:58905647-58905666 | Msa0559770:CDS | 45.0% | |
| CGAACAAGGAAAGACACTGA+AGG | + | chr4_1:58905837-58905856 | Msa0559770:CDS | 45.0% | |
| AAGACACTGAAGGATGCACA+AGG | + | chr4_1:58905847-58905866 | Msa0559770:CDS | 45.0% | |
| ACGTGTTTCGTGGTTTAGGT+CGG | + | chr4_1:58905872-58905891 | Msa0559770:intron | 45.0% | |
| GTGGAACATGCTTGTGGAAT+GGG | + | chr4_1:58906004-58906023 | Msa0559770:CDS | 45.0% | |
| ! | GAACCAATTGGTGTTTGTGC+TGG | + | chr4_1:58906091-58906110 | Msa0559770:CDS | 45.0% |
| ATCCCAGCACAAACACCAAT+TGG | - | chr4_1:58906097-58906116 | None:intergenic | 45.0% | |
| TCCATTGTGGATGTTTCCCA+TGG | + | chr4_1:58906144-58906163 | Msa0559770:CDS | 45.0% | |
| ! | TTTCCCATGGCTGTTACTTG+TGG | + | chr4_1:58906157-58906176 | Msa0559770:CDS | 45.0% |
| TTGCCACAAGTAACAGCCAT+GGG | - | chr4_1:58906163-58906182 | None:intergenic | 45.0% | |
| ATTGCCACAAGTAACAGCCA+TGG | - | chr4_1:58906164-58906183 | None:intergenic | 45.0% | |
| AAACCATCAGAGAAAGACCC+AGG | + | chr4_1:58906196-58906215 | Msa0559770:CDS | 45.0% | |
| GATAGAAAGCCAACATCACC+TGG | - | chr4_1:58906217-58906236 | None:intergenic | 45.0% | |
| CTAAACCATCTAGTGGGATG+AGG | + | chr4_1:58906378-58906397 | Msa0559770:intron | 45.0% | |
| !! | GCAAGCATTATAGAAGCACC+TGG | - | chr4_1:58906435-58906454 | None:intergenic | 45.0% |
| AATGCTTGCAGAATTGGCAC+TGG | + | chr4_1:58906446-58906465 | Msa0559770:CDS | 45.0% | |
| TGGTGTGCAGTCTAATATGG+GGG | + | chr4_1:58907185-58907204 | Msa0559770:intron | 45.0% | |
| !!! | GCTTTAGTTGCTGCTGGTTT+TGG | + | chr4_1:58907261-58907280 | Msa0559770:CDS | 45.0% |
| !!! | AGCACAGTTGTTTTTGTGGG+AGG | + | chr4_1:58907312-58907331 | Msa0559770:CDS | 45.0% |
| GGAAATCAGTCGAAGCAGAA+TGG | - | chr4_1:58907360-58907379 | None:intergenic | 45.0% | |
| GTTGCCCTGCACAAATATTG+TGG | - | chr4_1:58907713-58907732 | None:intergenic | 45.0% | |
| TGGTCCAGTTATCAGCAAAC+AGG | + | chr4_1:58907796-58907815 | Msa0559770:CDS | 45.0% | |
| TCTTCCATCAAGCAGTAGTC+TGG | - | chr4_1:58907985-58908004 | None:intergenic | 45.0% | |
| CCTGTCGGACACATAATCAA+AGG | - | chr4_1:58908233-58908252 | None:intergenic | 45.0% | |
| CCTTTGATTATGTGTCCGAC+AGG | + | chr4_1:58908230-58908249 | Msa0559770:intron | 45.0% | |
| GGAAAACAAAGGCCTACTCA+AGG | - | chr4_1:58908337-58908356 | None:intergenic | 45.0% | |
| AATTGGGCAGAAGAAATGGG+GGG | - | chr4_1:58908396-58908415 | None:intergenic | 45.0% | |
| TAGGTCCCAGGATATGAATC+TGG | + | chr4_1:58908453-58908472 | Msa0559770:intron | 45.0% | |
| TACCTTGTAGCACTCCATGT+CGG | - | chr4_1:58908517-58908536 | None:intergenic | 45.0% | |
| ! | TGGCCCAGTTCTTCTTTTCA+TGG | + | chr4_1:58908658-58908677 | Msa0559770:CDS | 45.0% |
| ! | CCCAGTTCTTCTTTTCATGG+AGG | + | chr4_1:58908661-58908680 | Msa0559770:CDS | 45.0% |
| AGCACCATTTCCATACCTGT+TGG | - | chr4_1:58908919-58908938 | None:intergenic | 45.0% | |
| TTTCAGACTGAGATTGAGGC+TGG | + | chr4_1:58908975-58908994 | Msa0559770:CDS | 45.0% | |
| TTCAGACTGAGATTGAGGCT+GGG | + | chr4_1:58908976-58908995 | Msa0559770:CDS | 45.0% | |
| ACTAGATTCTCTGTACCGCA+TGG | + | chr4_1:58909119-58909138 | Msa0559770:intron | 45.0% | |
| CTCATTATGGATCTTGGACC+AGG | + | chr4_1:58909195-58909214 | Msa0559770:intron | 45.0% | |
| TTATGGATCTTGGACCAGGT+TGG | + | chr4_1:58909199-58909218 | Msa0559770:intron | 45.0% | |
| GCTGGCGATCTCAATTTCTA+TGG | + | chr4_1:58909286-58909305 | Msa0559770:CDS | 45.0% | |
| ACTACTAGGCTGACACATCA+TGG | + | chr4_1:58909484-58909503 | Msa0559770:intron | 45.0% | |
| TGTTGAATTGCAGGCAAAGC+AGG | + | chr4_1:58909607-58909626 | Msa0559770:intron | 45.0% | |
| GTTGAATTGCAGGCAAAGCA+GGG | + | chr4_1:58909608-58909627 | Msa0559770:intron | 45.0% | |
| TTGAATTGCAGGCAAAGCAG+GGG | + | chr4_1:58909609-58909628 | Msa0559770:intron | 45.0% | |
| TGGCGGTAGCAAGATTAACA+TGG | + | chr4_1:58909684-58909703 | Msa0559770:CDS | 45.0% | |
| !!! | TTAATTTTTTTTTTATCTTT+TGG | + | chr4_1:58907641-58907660 | Msa0559770:intron | 5.0% |
| AAAGCTGCGACATCCTGGTT+TGG | - | chr4_1:58905150-58905169 | None:intergenic | 50.0% | |
| GATGATCGTGTATCTGGGCT+GGG | - | chr4_1:58905226-58905245 | None:intergenic | 50.0% | |
| GTTCCGAAAGCAGAGATCTG+AGG | - | chr4_1:58905305-58905324 | None:intergenic | 50.0% | |
| GTTGAGCCGCTGTTGAGAAA+TGG | - | chr4_1:58905331-58905350 | None:intergenic | 50.0% | |
| ! | ACTGGAGTGTTACGCCATGA+TGG | - | chr4_1:58905615-58905634 | None:intergenic | 50.0% |
| TATCTCTGCGTATCAGCTCC+TGG | - | chr4_1:58905668-58905687 | None:intergenic | 50.0% | |
| GGAGCTGATACGCAGAGATA+TGG | + | chr4_1:58905668-58905687 | Msa0559770:CDS | 50.0% | |
| CAGTGTCTTTCCTTGTTCGG+TGG | - | chr4_1:58905836-58905855 | None:intergenic | 50.0% | |
| GGAGACGTGTTTCGTGGTTT+AGG | + | chr4_1:58905868-58905887 | Msa0559770:CDS | 50.0% | |
| GGTGGAACATGCTTGTGGAA+TGG | + | chr4_1:58906003-58906022 | Msa0559770:CDS | 50.0% | |
| GCCATGGGAAACATCCACAA+TGG | - | chr4_1:58906148-58906167 | None:intergenic | 50.0% | |
| TCACCTGGGTCTTTCTCTGA+TGG | - | chr4_1:58906202-58906221 | None:intergenic | 50.0% | |
| GAGAAAGACCCAGGTGATGT+TGG | + | chr4_1:58906205-58906224 | Msa0559770:intron | 50.0% | |
| ! | AGCTAAAGGGAAGCGTGTTC+AGG | + | chr4_1:58907080-58907099 | Msa0559770:CDS | 50.0% |
| ! | AAAGGGAAGCGTGTTCAGGT+AGG | + | chr4_1:58907084-58907103 | Msa0559770:intron | 50.0% |
| TTGTGGGAGGTTCACAAGCA+TGG | + | chr4_1:58907325-58907344 | Msa0559770:CDS | 50.0% | |
| GCCCTGCACAAATATTGTGG+AGG | - | chr4_1:58907710-58907729 | None:intergenic | 50.0% | |
| ACGGAACCTGATGCAGATCT+TGG | + | chr4_1:58907776-58907795 | Msa0559770:CDS | 50.0% | |
| ACTGGACCAAGATCTGCATC+AGG | - | chr4_1:58907785-58907804 | None:intergenic | 50.0% | |
| GGCTAGAACAGTCCTTGAGT+AGG | + | chr4_1:58908322-58908341 | Msa0559770:intron | 50.0% | |
| GTGCATGACAAATAGGTCCC+AGG | + | chr4_1:58908441-58908460 | Msa0559770:intron | 50.0% | |
| !! | CTACTTCTGGTGTTGCTGCT+AGG | + | chr4_1:58908949-58908968 | Msa0559770:CDS | 50.0% |
| TAGGAACGTTGATGCCAACC+TGG | - | chr4_1:58909216-58909235 | None:intergenic | 50.0% | |
| CAGCAGTGGAAGGATTCAGT+TGG | + | chr4_1:58909664-58909683 | Msa0559770:CDS | 50.0% | |
| CAGTGGAAGGATTCAGTTGG+CGG | + | chr4_1:58909667-58909686 | Msa0559770:CDS | 50.0% | |
| CGATGATCGTGTATCTGGGC+TGG | - | chr4_1:58905227-58905246 | None:intergenic | 55.0% | |
| AGCCGCTGTTGAGAAATGGG+AGG | - | chr4_1:58905327-58905346 | None:intergenic | 55.0% | |
| GCACAAGGAGACGTGTTTCG+TGG | + | chr4_1:58905862-58905881 | Msa0559770:CDS | 55.0% | |
| !! | GAGGTGGTGGAACATGCTTG+TGG | + | chr4_1:58905998-58906017 | Msa0559770:intron | 55.0% |
| CCAAGCCTCATCCCACTAGA+TGG | - | chr4_1:58906386-58906405 | None:intergenic | 55.0% | |
| CCATCTAGTGGGATGAGGCT+TGG | + | chr4_1:58906383-58906402 | Msa0559770:intron | 55.0% | |
| ! | GCAGAATTGGCACTGGAAGC+TGG | + | chr4_1:58906453-58906472 | Msa0559770:CDS | 55.0% |
| !!! | CTGCTGGTTTTGGAGCTGCT+GGG | + | chr4_1:58907271-58907290 | Msa0559770:CDS | 55.0% |
| !!! | GTTTTGGAGCTGCTGGGCAA+AGG | + | chr4_1:58907277-58907296 | Msa0559770:CDS | 55.0% |
| !! | CTTACCGGCTTCACAGGCAA+AGG | + | chr4_1:58907917-58907936 | Msa0559770:intron | 55.0% |
| ! | GTTCAATCTGGGGTCGACAG+TGG | + | chr4_1:58907957-58907976 | Msa0559770:CDS | 55.0% |
| GGTGCCAGACTACTGCTTGA+TGG | + | chr4_1:58907978-58907997 | Msa0559770:CDS | 55.0% | |
| ! | TGCCGACATGGAGTGCTACA+AGG | + | chr4_1:58908512-58908531 | Msa0559770:CDS | 55.0% |
| ! | GGCAACAAGGCGTCATTTGC+TGG | + | chr4_1:58909268-58909287 | Msa0559770:CDS | 55.0% |
| ACACGTTGGCGCGTCGTAAC+TGG | - | chr4_1:58905633-58905652 | None:intergenic | 60.0% | |
| !! | ACTGGAAGCTGGTTTGCCCG+AGG | + | chr4_1:58906464-58906483 | Msa0559770:CDS | 60.0% |
| !! | CTGGAAGCTGGTTTGCCCGA+GGG | + | chr4_1:58906465-58906484 | Msa0559770:CDS | 60.0% |
| !!! | GCTGCTGGTTTTGGAGCTGC+TGG | + | chr4_1:58907270-58907289 | Msa0559770:CDS | 60.0% |
| ! | AGCTGCTGGGCAAAGGTGCA+TGG | + | chr4_1:58907284-58907303 | Msa0559770:CDS | 60.0% |
| CGCTCCTTTGCCTGTGAAGC+CGG | - | chr4_1:58907924-58907943 | None:intergenic | 60.0% | |
| GACTGAGATTGAGGCTGGGC+AGG | + | chr4_1:58908980-58908999 | Msa0559770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 58904827 | 58909925 | 58904827 | ID=Msa0559770;Name=Msa0559770 |
| chr4_1 | mRNA | 58904827 | 58909925 | 58904827 | ID=Msa0559770-mRNA-1;Parent=Msa0559770;Name=Msa0559770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=300|1|1|1|0.94|0.88|18|193|537 |
| chr4_1 | exon | 58904827 | 58904885 | 58904827 | ID=Msa0559770-mRNA-1:exon:18092;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58904916 | 58905181 | 58904916 | ID=Msa0559770-mRNA-1:exon:18093;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58905279 | 58905445 | 58905279 | ID=Msa0559770-mRNA-1:exon:18094;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58905528 | 58905689 | 58905528 | ID=Msa0559770-mRNA-1:exon:18095;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58905811 | 58905889 | 58905811 | ID=Msa0559770-mRNA-1:exon:18096;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58905999 | 58906217 | 58905999 | ID=Msa0559770-mRNA-1:exon:18097;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58906436 | 58906515 | 58906436 | ID=Msa0559770-mRNA-1:exon:18098;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58906747 | 58906812 | 58906747 | ID=Msa0559770-mRNA-1:exon:18099;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58907051 | 58907101 | 58907051 | ID=Msa0559770-mRNA-1:exon:18100;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58907195 | 58907346 | 58907195 | ID=Msa0559770-mRNA-1:exon:18101;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58907727 | 58907817 | 58907727 | ID=Msa0559770-mRNA-1:exon:18102;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58907933 | 58908013 | 58907933 | ID=Msa0559770-mRNA-1:exon:18103;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58908456 | 58908533 | 58908456 | ID=Msa0559770-mRNA-1:exon:18104;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58908647 | 58908682 | 58908647 | ID=Msa0559770-mRNA-1:exon:18105;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58908797 | 58908840 | 58908797 | ID=Msa0559770-mRNA-1:exon:18106;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58908923 | 58909001 | 58908923 | ID=Msa0559770-mRNA-1:exon:18107;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58909217 | 58909307 | 58909217 | ID=Msa0559770-mRNA-1:exon:18108;Parent=Msa0559770-mRNA-1 |
| chr4_1 | exon | 58909620 | 58909925 | 58909620 | ID=Msa0559770-mRNA-1:exon:18109;Parent=Msa0559770-mRNA-1 |
| chr4_1 | five_prime_UTR | 58904827 | 58904885 | 58904827 | ID=Msa0559770-mRNA-1:five_prime_utr;Parent=Msa0559770-mRNA-1 |
| chr4_1 | five_prime_UTR | 58904916 | 58905156 | 58904916 | ID=Msa0559770-mRNA-1:five_prime_utr;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58905157 | 58905181 | 58905157 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58905279 | 58905445 | 58905279 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58905528 | 58905689 | 58905528 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58905811 | 58905889 | 58905811 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58905999 | 58906217 | 58905999 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58906436 | 58906515 | 58906436 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58906747 | 58906812 | 58906747 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58907051 | 58907101 | 58907051 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58907195 | 58907346 | 58907195 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58907727 | 58907817 | 58907727 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58907933 | 58908013 | 58907933 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58908456 | 58908533 | 58908456 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58908647 | 58908682 | 58908647 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58908797 | 58908840 | 58908797 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58908923 | 58909001 | 58908923 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58909217 | 58909307 | 58909217 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | CDS | 58909620 | 58909732 | 58909620 | ID=Msa0559770-mRNA-1:cds;Parent=Msa0559770-mRNA-1 |
| chr4_1 | three_prime_UTR | 58909733 | 58909925 | 58909733 | ID=Msa0559770-mRNA-1:three_prime_utr;Parent=Msa0559770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
