AlfalfaGEDB | Msa0562370

M. sativa cultivar zhongmu-4 / Msa0562370

KEGG: K14713
GO: GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771
PFAM: PF02535.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562370	XP_039685158.1	93.852	488	27	3	1	487	1	486	0.0	764

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562370	sp\|Q9M647\|IAR1_ARATH	64.354	418	126	9	73	487	72	469	5.33e-165	477

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562370	A0A396GMG8	93.852	488	27	3	1	487	1	486	0.0	764

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0172070	Msa0562370	0.800304	1.534458e-48	-8.615850e-47
Msa0358310	Msa0562370	0.815306	9.892672e-52	-8.615850e-47
Msa0562370	Msa0655720	0.828680	7.858509e-55	-8.615850e-47
Msa0562370	Msa1302830	0.803153	3.993037e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562370	MtrunA17_Chr8g0375561	93.852	488	27	3	1	487	1	486	0.0	764

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562370	AT1G68100.1	64.354	418	126	9	73	487	72	469	5.42e-166	477
Msa0562370	AT1G68100.2	63.760	367	110	9	73	436	72	418	6.04e-138	404

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Find 139 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTTTGGTAGATGAG+GGG	0.647576	4_1:-62189118	Msa0562370:CDS
AAAGGCTGTTGTTGATTCAT+TGG	0.343628	4_1:-62191114	Msa0562370:CDS
AAAGTGATGATGGTCGTGAT+GGG	0.607012	4_1:+62191792	None:intergenic
AAATCACCGATTGTGTTTGA+TGG	0.387373	4_1:-62185644	Msa0562370:three_prime_UTR
AAATTACAGGCAGAATAATC+AGG	0.434136	4_1:+62191266	None:intergenic
AACATCCATCATCATCACTG+TGG	0.759172	4_1:-62191937	Msa0562370:CDS
AACGGCGATTATTATGCCGA+AGG	0.619661	4_1:+62192161	None:intergenic
AAGGATAGATCAATACAGAA+TGG	0.566130	4_1:-62185837	Msa0562370:three_prime_UTR
AAGTGATGATGGTCGTGATG+GGG	0.680703	4_1:+62191793	None:intergenic
AAGTTGAAGAACAAAGCTTT+TGG	0.434106	4_1:+62186817	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCTATGTTAGAAGAAGAAA+TGG	-	chr4_1:62185697-62185716	Msa0562370:three_prime_UTR	30.0%
TCCATTTCTTCTTCTAACAT+AGG	+	chr4_1:62185701-62185720	None:intergenic	30.0%
AAATGCAACTATTCGTGAAA+TGG	-	chr4_1:62186233-62186252	Msa0562370:intron	30.0%
AATGCAACTATTCGTGAAAT+GGG	-	chr4_1:62186234-62186253	Msa0562370:intron	30.0%
TTAGTAAAAACAAGCTTTCC+TGG	-	chr4_1:62186331-62186350	Msa0562370:intron	30.0%
ACAAACTGAGGAATCAAATA+AGG	+	chr4_1:62186357-62186376	None:intergenic	30.0%
GTAGAAAATGCACTAAAAAC+AGG	+	chr4_1:62186408-62186427	None:intergenic	30.0%
TCCACTTAAATCTGCATAAT+TGG	-	chr4_1:62186435-62186454	Msa0562370:intron	30.0%
CCACTTAAATCTGCATAATT+GGG	-	chr4_1:62186436-62186455	Msa0562370:intron	30.0%
AAATTACAGGCAGAATAATC+AGG	+	chr4_1:62186627-62186646	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	62185561	62192351	62185561	ID=Msa0562370;Name=Msa0562370
chr4_1	mRNA	62185561	62192351	62185561	ID=Msa0562370-mRNA-1;Parent=Msa0562370;Name=Msa0562370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=239\|1\|1\|1\|0.90\|0.83\|12\|459\|487
chr4_1	exon	62185561	62186175	62185561	ID=Msa0562370-mRNA-1:exon:19666;Parent=Msa0562370-mRNA-1
chr4_1	exon	62186252	62186296	62186252	ID=Msa0562370-mRNA-1:exon:19665;Parent=Msa0562370-mRNA-1
chr4_1	exon	62186780	62186881	62186780	ID=Msa0562370-mRNA-1:exon:19664;Parent=Msa0562370-mRNA-1
chr4_1	exon	62188330	62188437	62188330	ID=Msa0562370-mRNA-1:exon:19663;Parent=Msa0562370-mRNA-1
chr4_1	exon	62188518	62188670	62188518	ID=Msa0562370-mRNA-1:exon:19662;Parent=Msa0562370-mRNA-1
chr4_1	exon	62189043	62189317	62189043	ID=Msa0562370-mRNA-1:exon:19661;Parent=Msa0562370-mRNA-1
chr4_1	exon	62189779	62189895	62189779	ID=Msa0562370-mRNA-1:exon:19660;Parent=Msa0562370-mRNA-1
chr4_1	exon	62190796	62190847	62190796	ID=Msa0562370-mRNA-1:exon:19659;Parent=Msa0562370-mRNA-1
chr4_1	exon	62191103	62191152	62191103	ID=Msa0562370-mRNA-1:exon:19658;Parent=Msa0562370-mRNA-1
chr4_1	exon	62191263	62191346	62191263	ID=Msa0562370-mRNA-1:exon:19657;Parent=Msa0562370-mRNA-1
chr4_1	exon	62191764	62192294	62191764	ID=Msa0562370-mRNA-1:exon:19656;Parent=Msa0562370-mRNA-1
chr4_1	exon	62192322	62192351	62192322	ID=Msa0562370-mRNA-1:exon:19655;Parent=Msa0562370-mRNA-1
chr4_1	five_prime_UTR	62192322	62192351	62192322	ID=Msa0562370-mRNA-1:five_prime_utr;Parent=Msa0562370-mRNA-1
chr4_1	five_prime_UTR	62192086	62192294	62192086	ID=Msa0562370-mRNA-1:five_prime_utr;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62191764	62192085	62191764	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62191263	62191346	62191263	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62191103	62191152	62191103	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62190796	62190847	62190796	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62189779	62189895	62189779	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62189043	62189317	62189043	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62188518	62188670	62188518	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62188330	62188437	62188330	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62186780	62186881	62186780	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62186252	62186296	62186252	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	CDS	62186020	62186175	62186020	ID=Msa0562370-mRNA-1:cds;Parent=Msa0562370-mRNA-1
chr4_1	three_prime_UTR	62185561	62186019	62185561	ID=Msa0562370-mRNA-1:three_prime_utr;Parent=Msa0562370-mRNA-1

Gene Sequence

>Msa0562370

ATGGCATTGAGTAGTAGTAGTAGAAAGAGAAATGAATTCTTCTTCTTTTTCATCTGTTTGTTGTTTCTTTGCTCCTCCTTTTTGGATCTGACAAAAGCCCATCAAGGTCACTCTCATTCTATACCCAACATCCATCATCATCACTGTGGTGGAGATCATGATCATCACCATGATCATGATCATGCTCATGACCATGTTCATCAACAGTCCAAGTTACTTCCAGAGGAATTAGCGGAAGAGGAAGATATGAAACTCTATGGCTTCGGTTTACCCCATCACGACCATCATCACTTTACTGCCTCCACTGAACTATCGGGTTTAGGTCTTTGGTTGAATGCGTTGGGCTGTTCATTTCTAGTGAGCATGGCTTCCTTGATTTGCCTGATTATTCTGCCTGTAATTTTTGTTCAAGGGAAACCATCAAAGGCTGTTGTTGATTCATTGGCTTTATTTGGGGCAGGAGCTATGTTGGGGGATGCTTTTCTTCACCAACTACCGCATGCTTTTGGTGGTGGTGAACATTCCCATTCTCATGGTGACCATGCAGACCATGACCATGATGATAATTCTGGACATGGACATTCACATTCTTTAGCTGATCTTTCTACAGGAATGTCTGTCCTAGCTGGAATTGTACTCTTTCTTCTTGTGGAGAAGCTAGTGAGGTATGTTGAAGAAAACTCAGGAGGAGCTAACTCGTGGGGGCATGGACACCACCACCATAACCACAATAGCAAGAAAAAATTGAAAGATGATAACAATTCCGATGTCAACAATCAGTCACAGTCCAGTAATACAAAAAAAAAGAGTTTGGTAGATGAGGGGAAAGAAGACAATCAAGTATCACATGACACATTGGAGGGAGATAAGCCAGCTCAATCTAAATCCTCGCTTAGAAAGAGAAGTGGAAGCAATGCAACCAAAGGTAGTAGTCAGAATGATAATGCTGAAGATAGCTCCACTGATAATGTCAAATCTTCAGATGTTAAAGTACCAGCTAGACCAGCAAGCAGTCTTGTGTTTGGCTATCTCAATCTTTTCTCTGATGGAGTTCATAATTTCACTGATGGAATTGCATTAGGAAGTGCATTCATTCTTTATGGATCTGTTGGTGGCTGGTCTAGAACTCTGTTTTTGTTGGCACATGAAATTCCTCAAGAGGTTGGTGATTTTGGTATTTTGATAAGATCTGGTTTCAGCATACCAAAAGCTTTGTTCTTCAACTTTTTATCTGCACTTGTGGCACTTGCAGGCACTGCATTGGCTCTGCTCTGGGGGAAAGATCCTGGACAGTCATCCCTGATTGAGGGATTTACTGCAGGTGGATTTATATACATCGCCATTGCAGGAGTGCTTGCAGAGATGAATGACAATGGGAAGACGACACTGAGAAGTACAGTCGTTCAAATAATCTCACTGACAATGGGAATGGCTGTTGCACTTGGCATTTCCCTTGTAGAATGA

Protein sequence

>Msa0562370

MALSSSSRKRNEFFFFFICLLFLCSSFLDLTKAHQGHSHSIPNIHHHHCGGDHDHHHDHDHAHDHVHQQSKLLPEELAEEEDMKLYGFGLPHHDHHHFTASTELSGLGLWLNALGCSFLVSMASLICLIILPVIFVQGKPSKAVVDSLALFGAGAMLGDAFLHQLPHAFGGGEHSHSHGDHADHDHDDNSGHGHSHSLADLSTGMSVLAGIVLFLLVEKLVRYVEENSGGANSWGHGHHHHNHNSKKKLKDDNNSDVNNQSQSSNTKKKSLVDEGKEDNQVSHDTLEGDKPAQSKSSLRKRSGSNATKGSSQNDNAEDSSTDNVKSSDVKVPARPASSLVFGYLNLFSDGVHNFTDGIALGSAFILYGSVGGWSRTLFLLAHEIPQEVGDFGILIRSGFSIPKALFFNFLSALVALAGTALALLWGKDPGQSSLIEGFTAGGFIYIAIAGVLAEMNDNGKTTLRSTVVQIISLTMGMAVALGISLVE*