AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358310 MtrunA17_Chr3g0116181 99.057 212 2 0 2 213 74 285 3.24e-156 433
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358310 AT5G50375.3 79.710 207 42 0 2 208 6 212 2.57e-126 355
Msa0358310 AT5G50375.1 79.710 207 42 0 2 208 74 280 3.66e-125 355
Msa0358310 AT5G50375.2 81.503 173 32 0 2 174 74 246 1.83e-104 303

Find 47 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTATGGCGCATCTTTC+TGG 0.013477 3_1:-43107204 Msa0358310:CDS
GTTATGTTGGGAATTATTTC+TGG 0.136999 3_1:-43109275 Msa0358310:CDS
CGATCCACAAATTCATAATA+AGG 0.203511 3_1:+43107512 None:intergenic
ATGAGAAGCCTGGCGATAAA+TGG 0.259830 3_1:-43107286 Msa0358310:CDS
GACTTATGGCGCATCTTTCT+GGG 0.315138 3_1:-43107203 Msa0358310:CDS
CTTTCTGGGTCCAATTGTTC+CGG 0.326439 3_1:-43107189 Msa0358310:CDS
TATCTTGGCAGGACCGTTAT+TGG 0.327717 3_1:-43110316 Msa0358310:CDS
AAGAGTGGCTGTTGATGCTC+TGG 0.333145 3_1:-43107255 Msa0358310:CDS
TCACAATAATACTTGACTTA+TGG 0.346712 3_1:-43107217 Msa0358310:CDS
TGAGCTTCCCAATGTTTCTA+AGG 0.353587 3_1:-43107439 Msa0358310:intron
ATCTTGGCAGGACCGTTATT+GGG 0.374611 3_1:-43110315 Msa0358310:CDS
TGCTCTGGGTGCTGCAATGC+TGG 0.375660 3_1:-43107240 Msa0358310:CDS
ACATGACACTGCGTCGATTA+CGG 0.378459 3_1:-43109043 Msa0358310:CDS
GCTGCCGACAGGCCAGTCTA+TGG 0.400194 3_1:-43109311 Msa0358310:intron
GCTTCTGAGACCGGAACAAT+TGG 0.402278 3_1:+43107179 None:intergenic
GTTCCCTTATTATGAATTTG+TGG 0.419718 3_1:-43107516 Msa0358310:CDS
ATAATAATCTTCAGTTATGT+TGG 0.432752 3_1:-43109288 Msa0358310:CDS
CATCTTATACCTTTCCATCA+TGG 0.442559 3_1:-43109224 Msa0358310:CDS
AAACTTACCTTAGAAACATT+GGG 0.450083 3_1:+43107432 None:intergenic
GCAAAACAGTGTTCTCCAAC+AGG 0.453257 3_1:-43107158 Msa0358310:CDS
CGAGAATCTATGTACAAAGT+TGG 0.454985 3_1:-43107491 Msa0358310:CDS
TAATAATCTTCAGTTATGTT+GGG 0.455018 3_1:-43109287 Msa0358310:CDS
GGCAAGTCCCATTTATCGCC+AGG 0.463076 3_1:+43107278 None:intergenic
AAAACTTACCTTAGAAACAT+TGG 0.463283 3_1:+43107431 None:intergenic
TGCAGGATTGATGAGAAGCC+TGG 0.467133 3_1:-43107296 Msa0358310:intron
TGAGAAGCCTGGCGATAAAT+GGG 0.467332 3_1:-43107285 Msa0358310:CDS
GATCCACAAATTCATAATAA+GGG 0.475328 3_1:+43107513 None:intergenic
TGGAAATAGCTAACGTCTCC+AGG 0.481480 3_1:+43108937 None:intergenic
ACGTAATTCTCATGTGAGAT+TGG 0.503741 3_1:+43107112 None:intergenic
CATTTACCTTGACCCAATAA+CGG 0.503869 3_1:+43110303 None:intergenic
GGAAGCAAACATGAGTGAGC+AGG 0.509168 3_1:+43109087 None:intergenic
AGGCTGATAGAGGCATATCT+TGG 0.518841 3_1:-43110331 Msa0358310:CDS
AGAGTGGCTGTTGATGCTCT+GGG 0.523207 3_1:-43107254 Msa0358310:CDS
AGAGCATCAACAGCCACTCT+TGG 0.534026 3_1:+43107257 None:intergenic
TGATAGAGGCATATCTTGGC+AGG 0.534646 3_1:-43110327 Msa0358310:CDS
GAAGATTATTATCCATAGAC+TGG 0.537540 3_1:+43109299 None:intergenic
GGTGGGCTGCTGAAGCTGCA+TGG 0.560758 3_1:-43108989 Msa0358310:CDS
GGTATGCTATAAAATAAGCA+AGG 0.582491 3_1:+43108958 None:intergenic
GCAGGACCGTTATTGGGTCA+AGG 0.582907 3_1:-43110309 Msa0358310:intron
GAAAACCAGGGTAATCCTGT+TGG 0.584944 3_1:+43107143 None:intergenic
GTTCTCCAACAGGATTACCC+TGG 0.614928 3_1:-43107148 Msa0358310:CDS
TCGATGCAACATGATAAAAG+AGG 0.621052 3_1:+43109066 None:intergenic
ATTGGCGTGTGTTGAAAACC+AGG 0.623943 3_1:+43107130 None:intergenic
TAAATGGGACTTGCCAAGAG+TGG 0.629905 3_1:-43107270 Msa0358310:CDS
GTATGCTATAAAATAAGCAA+GGG 0.656470 3_1:+43108959 None:intergenic
TTGGCGTGTGTTGAAAACCA+GGG 0.733461 3_1:+43107131 None:intergenic
GTGAGCAGGAATGTTGTGTG+TGG 0.771197 3_1:+43109101 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAAAAAATAATTTTCTT+AGG - chr3_1:43108370-43108389 Msa0358310:intron 10.0%
!! ATTAAATAAATATGTATATG+TGG + chr3_1:43109121-43109140 None:intergenic 10.0%
!!! GATTGACTTATTTAAATTTA+GGG + chr3_1:43107644-43107663 None:intergenic 15.0%
!!! TTTTTTGGATATTATGATAA+AGG - chr3_1:43109038-43109057 Msa0358310:CDS 15.0%
!! ACATATTTATTTAATTCTGT+TGG - chr3_1:43109126-43109145 Msa0358310:intron 15.0%
!! TTATTATTATGATCTTTGTT+TGG - chr3_1:43109609-43109628 Msa0358310:intron 15.0%
!! GTAAATTATTTGAATTGTTA+TGG - chr3_1:43109990-43110009 Msa0358310:intron 15.0%
!!! TGTTGATTGTAATATTTTTT+AGG - chr3_1:43110183-43110202 Msa0358310:intron 15.0%
!! TTGCCAAAAAATATAAAAAA+GGG + chr3_1:43110390-43110409 None:intergenic 15.0%
!! TTTGCCAAAAAATATAAAAA+AGG + chr3_1:43110391-43110410 None:intergenic 15.0%
!! ATAATGTTATTGTTATGTAT+TGG - chr3_1:43110943-43110962 Msa0358310:intron 15.0%
!!! GGATTGACTTATTTAAATTT+AGG + chr3_1:43107645-43107664 None:intergenic 20.0%
!! GATATTCATACTTATTAACA+AGG - chr3_1:43108012-43108031 Msa0358310:intron 20.0%
!!! GAAGAAGATAAACTATTTTT+TGG + chr3_1:43108068-43108087 None:intergenic 20.0%
!!! AATCATATATCAAATTTTGC+AGG - chr3_1:43108140-43108159 Msa0358310:intron 20.0%
!! AATACAGCAATGTAAATATT+TGG + chr3_1:43108234-43108253 None:intergenic 20.0%
!!! AATAATTTTCTTAGGCATAA+TGG - chr3_1:43108378-43108397 Msa0358310:intron 20.0%
!! ATAAGGAAAATAGAATTTGA+GGG + chr3_1:43108493-43108512 None:intergenic 20.0%
!! AATAAGGAAAATAGAATTTG+AGG + chr3_1:43108494-43108513 None:intergenic 20.0%
!! TACTTTGCACTTTATTATTA+GGG + chr3_1:43108644-43108663 None:intergenic 20.0%
!! ATACTTTGCACTTTATTATT+AGG + chr3_1:43108645-43108664 None:intergenic 20.0%
!! AAGAAACTAAACATAACAAA+AGG - chr3_1:43108703-43108722 Msa0358310:intron 20.0%
!!! CTAAGTAGTAAAATCATTTT+AGG + chr3_1:43109001-43109020 None:intergenic 20.0%
!! ATAATAATCTTCAGTTATGT+TGG - chr3_1:43109203-43109222 Msa0358310:intron 20.0%
!! TAATAATCTTCAGTTATGTT+GGG - chr3_1:43109204-43109223 Msa0358310:intron 20.0%
!! AATAATAAAAACCAGTAGAA+TGG + chr3_1:43109597-43109616 None:intergenic 20.0%
!!! TGCATTTTTGGATATATTTA+TGG - chr3_1:43109635-43109654 Msa0358310:intron 20.0%
!! CAATTCAAATAATTTACGAA+GGG + chr3_1:43109987-43110006 None:intergenic 20.0%
!! ACAATTCAAATAATTTACGA+AGG + chr3_1:43109988-43110007 None:intergenic 20.0%
!! TGCCAAAAAATATAAAAAAG+GGG + chr3_1:43110389-43110408 None:intergenic 20.0%
!! ACAAGAAAATATATGAAGAT+AGG + chr3_1:43110577-43110596 None:intergenic 20.0%
!! AATTTCTCAAATAGAAGAAA+TGG + chr3_1:43110804-43110823 None:intergenic 20.0%
! TTAGAATACTCCTATTACTT+AGG - chr3_1:43107208-43107227 Msa0358310:CDS 25.0%
! AATTCCTATCATAAAGTCAA+GGG + chr3_1:43107347-43107366 None:intergenic 25.0%
! TAATTCCTATCATAAAGTCA+AGG + chr3_1:43107348-43107367 None:intergenic 25.0%
!! ATTTAAATTTAGGGTCTGTT+TGG + chr3_1:43107666-43107685 None:intergenic 25.0%
! TTACAAATAAGTATTCAGCA+GGG + chr3_1:43107706-43107725 None:intergenic 25.0%
!! ACTGTTTTCATAAGCTATTT+TGG - chr3_1:43107780-43107799 Msa0358310:intron 25.0%
! CACAAACTTAATGCAAAAAA+TGG + chr3_1:43107880-43107899 None:intergenic 25.0%
!! ATTTATGCTATGGCAATTTT+TGG - chr3_1:43107919-43107938 Msa0358310:intron 25.0%
! TGAATATCAGCATAAAAAGT+GGG + chr3_1:43108000-43108019 None:intergenic 25.0%
! ATGAATATCAGCATAAAAAG+TGG + chr3_1:43108001-43108020 None:intergenic 25.0%
! TAAAAAACTGCATAACTCAT+CGG + chr3_1:43108039-43108058 None:intergenic 25.0%
!!! GTCAAGGTAAATGTTTTTAT+AGG - chr3_1:43108198-43108217 Msa0358310:intron 25.0%
! TGTCATTGAATCATAAATGA+AGG + chr3_1:43108272-43108291 None:intergenic 25.0%
! CATTTATGATTCAATGACAT+TGG - chr3_1:43108273-43108292 Msa0358310:intron 25.0%
! CATGGTTTCAAATACTTTAA+TGG + chr3_1:43108528-43108547 None:intergenic 25.0%
! TGCATTAACATGATTGAAAA+GGG + chr3_1:43108684-43108703 None:intergenic 25.0%
! TTGCATTAACATGATTGAAA+AGG + chr3_1:43108685-43108704 None:intergenic 25.0%
! TAAATCTGAATGTAGATGAA+AGG + chr3_1:43108966-43108985 None:intergenic 25.0%
!!! GTGTTATTGTTGCTATTTTT+TGG - chr3_1:43109023-43109042 Msa0358310:CDS 25.0%
! TGGATATTATGATAAAGGAA+TGG - chr3_1:43109043-43109062 Msa0358310:CDS 25.0%
! AGCACAATAAATCCATAATT+AGG + chr3_1:43109095-43109114 None:intergenic 25.0%
! GTATGCTATAAAATAAGCAA+GGG + chr3_1:43109535-43109554 None:intergenic 25.0%
!!! CTATTGTTATTTTCGTAGTT+AGG - chr3_1:43109871-43109890 Msa0358310:intron 25.0%
! ATAAAACAAAGTTGCAGAAA+GGG + chr3_1:43109902-43109921 None:intergenic 25.0%
! AGGCTGATATATGAAAATTA+TGG + chr3_1:43110211-43110230 None:intergenic 25.0%
!!! ACATGTGTAAAGACATTTTT+TGG - chr3_1:43110249-43110268 Msa0358310:intron 25.0%
!!! TCAGTATTTAGCTTTTACAT+TGG - chr3_1:43110316-43110335 Msa0358310:CDS 25.0%
!!! TCCCCCTTTTTTATATTTTT+TGG - chr3_1:43110384-43110403 Msa0358310:intron 25.0%
! GCCAAAAAATATAAAAAAGG+GGG + chr3_1:43110388-43110407 None:intergenic 25.0%
! TAAATACGTCAAAGAATTAG+AGG + chr3_1:43110457-43110476 None:intergenic 25.0%
! GGTTCAATCAAAAGAAAAAA+GGG + chr3_1:43110503-43110522 None:intergenic 25.0%
! AGGTTCAATCAAAAGAAAAA+AGG + chr3_1:43110504-43110523 None:intergenic 25.0%
! ATATCAAAATATCCACTTGA+AGG + chr3_1:43110528-43110547 None:intergenic 25.0%
!!! GCTTAAAATTTGATTTTGCT+AGG - chr3_1:43110681-43110700 Msa0358310:intron 25.0%
!! AATTTTCTCAATCACTCTTT+TGG - chr3_1:43110820-43110839 Msa0358310:intron 25.0%
! TTACCAAACTAACAAATTGT+TGG + chr3_1:43110846-43110865 None:intergenic 25.0%
! AAACGTACATTACATATTGA+AGG + chr3_1:43110917-43110936 None:intergenic 25.0%
! GATCCACAAATTCATAATAA+GGG + chr3_1:43110981-43111000 None:intergenic 25.0%
! AAACTTACCTTAGAAACATT+GGG + chr3_1:43111062-43111081 None:intergenic 25.0%
! AAAACTTACCTTAGAAACAT+TGG + chr3_1:43111063-43111082 None:intergenic 25.0%
! CATTGTACTAATCTTATTGA+TGG - chr3_1:43111157-43111176 Msa0358310:intron 25.0%
! TCACAATAATACTTGACTTA+TGG - chr3_1:43111274-43111293 Msa0358310:intron 25.0%
!! TTCATGGTCTCTTTTTCATT+TGG + chr3_1:43107149-43107168 None:intergenic 30.0%
TATTAGAGAGCCTAAGTAAT+AGG + chr3_1:43107221-43107240 None:intergenic 30.0%
ACTTAATCACCTTCTCATAT+TGG - chr3_1:43107244-43107263 Msa0358310:CDS 30.0%
CTTAATCACCTTCTCATATT+GGG - chr3_1:43107245-43107264 Msa0358310:CDS 30.0%
TGTATATACCCAATATGAGA+AGG + chr3_1:43107256-43107275 None:intergenic 30.0%
TCTCATATTGGGTATATACA+TGG - chr3_1:43107256-43107275 Msa0358310:CDS 30.0%
ATTACAGTCACTAATTCTCA+TGG + chr3_1:43107309-43107328 None:intergenic 30.0%
TATCATAAAGTCAAGGGTAA+GGG + chr3_1:43107341-43107360 None:intergenic 30.0%
CTTACAAATAAGTATTCAGC+AGG + chr3_1:43107707-43107726 None:intergenic 30.0%
ACCCTATTACATTTATGCTA+TGG - chr3_1:43107909-43107928 Msa0358310:intron 30.0%
GCCATAGCATAAATGTAATA+GGG + chr3_1:43107913-43107932 None:intergenic 30.0%
TGCCATAGCATAAATGTAAT+AGG + chr3_1:43107914-43107933 None:intergenic 30.0%
! ATTTTCCTTATTACCAAGAC+TGG - chr3_1:43108502-43108521 Msa0358310:intron 30.0%
GTGCACATTTGACATTATAT+TGG - chr3_1:43108561-43108580 Msa0358310:intron 30.0%
CATTAACATGATTGAAAAGG+GGG + chr3_1:43108682-43108701 None:intergenic 30.0%
GCATTAACATGATTGAAAAG+GGG + chr3_1:43108683-43108702 None:intergenic 30.0%
ATAAACTCACGCAATTCATA+TGG + chr3_1:43108734-43108753 None:intergenic 30.0%
! TATTTTTCATGTCTTGATCG+AGG - chr3_1:43108921-43108940 Msa0358310:intron 30.0%
! ATTTTTCATGTCTTGATCGA+GGG - chr3_1:43108922-43108941 Msa0358310:intron 30.0%
CTACTTTAGACTCCTAATTA+TGG - chr3_1:43109080-43109099 Msa0358310:CDS 30.0%
AGCAAATACATGTACATGTT+AGG + chr3_1:43109163-43109182 None:intergenic 30.0%
GAAGATTATTATCCATAGAC+TGG + chr3_1:43109195-43109214 None:intergenic 30.0%
GTTATGTTGGGAATTATTTC+TGG - chr3_1:43109216-43109235 Msa0358310:CDS 30.0%
!!! TCATTACTTTTTCACAGTTC+TGG - chr3_1:43109241-43109260 Msa0358310:CDS 30.0%
!!! CATTACTTTTTCACAGTTCT+GGG - chr3_1:43109242-43109261 Msa0358310:CDS 30.0%
! ACATTGTTCATTTTCCATGA+TGG + chr3_1:43109284-43109303 None:intergenic 30.0%
!! CATTGATTTGCTCTATTTGT+TGG - chr3_1:43109358-43109377 Msa0358310:intron 30.0%
CTGATACACCAGAAAAAATT+CGG - chr3_1:43109481-43109500 Msa0358310:intron 30.0%
GGTATGCTATAAAATAAGCA+AGG + chr3_1:43109536-43109555 None:intergenic 30.0%
!!! TGCTTATTTTATAGCATACC+TGG - chr3_1:43109536-43109555 Msa0358310:intron 30.0%
! TTAGCTATTTCCAATGTATG+TGG - chr3_1:43109564-43109583 Msa0358310:intron 30.0%
! TTTGTTTGGTCATGCATTTT+TGG - chr3_1:43109623-43109642 Msa0358310:intron 30.0%
! TGCAATCTTTTCTTCTTGAA+TGG - chr3_1:43109660-43109679 Msa0358310:intron 30.0%
CAATGCATTTGTACATTTCA+AGG - chr3_1:43109824-43109843 Msa0358310:intron 30.0%
CATAAAACAAAGTTGCAGAA+AGG + chr3_1:43109903-43109922 None:intergenic 30.0%
AATAGCCAAATCAATGTGTA+TGG + chr3_1:43110278-43110297 None:intergenic 30.0%
TGAAGATAGGAAATTTCTGA+AGG + chr3_1:43110564-43110583 None:intergenic 30.0%
TACTTAATTCTAGATGCTCA+AGG - chr3_1:43110718-43110737 Msa0358310:intron 30.0%
!!! TGGTTAGTTTTTTCTTTGCA+TGG - chr3_1:43110746-43110765 Msa0358310:intron 30.0%
!!! CATGGATTATTTTTATCCCT+TGG - chr3_1:43110764-43110783 Msa0358310:intron 30.0%
CATTACATATTGAAGGTCAA+AGG + chr3_1:43110910-43110929 None:intergenic 30.0%
GTTCCCTTATTATGAATTTG+TGG - chr3_1:43110975-43110994 Msa0358310:intron 30.0%
CGATCCACAAATTCATAATA+AGG + chr3_1:43110982-43111001 None:intergenic 30.0%
!! GTCTCTTTTTCATTTGGACT+GGG + chr3_1:43107143-43107162 None:intergenic 35.0%
TATATTGTGACCTAACATGC+AGG + chr3_1:43107178-43107197 None:intergenic 35.0%
GCATGTTAGGTCACAATATA+AGG - chr3_1:43107178-43107197 Msa0358310:CDS 35.0%
CTATCATAAAGTCAAGGGTA+AGG + chr3_1:43107342-43107361 None:intergenic 35.0%
CTTACCCTTGACTTTATGAT+AGG - chr3_1:43107340-43107359 Msa0358310:intron 35.0%
AGTCTCACAAAACTTATGTC+AGG - chr3_1:43107618-43107637 Msa0358310:intron 35.0%
CTCAAATAAACTAACCCTGA+TGG - chr3_1:43107854-43107873 Msa0358310:intron 35.0%
AATGCAAAAAATGGCCATCA+GGG + chr3_1:43107871-43107890 None:intergenic 35.0%
TAATGCAAAAAATGGCCATC+AGG + chr3_1:43107872-43107891 None:intergenic 35.0%
AGAATCGACATTCAAGTACT+GGG + chr3_1:43107967-43107986 None:intergenic 35.0%
AAGAATCGACATTCAAGTAC+TGG + chr3_1:43107968-43107987 None:intergenic 35.0%
!! TACTTGAATGTCGATTCTTC+TGG - chr3_1:43107969-43107988 Msa0358310:intron 35.0%
!! ACTTGAATGTCGATTCTTCT+GGG - chr3_1:43107970-43107989 Msa0358310:intron 35.0%
CATTTACCTTGACCCAATAA+CGG + chr3_1:43108191-43108210 None:intergenic 35.0%
AATACTTTAATGGCCAGTCT+TGG + chr3_1:43108518-43108537 None:intergenic 35.0%
TTGAAACCATGACAAACAAG+TGG - chr3_1:43108537-43108556 Msa0358310:intron 35.0%
!! GGTGTTATTCGTCTTGTATT+TGG - chr3_1:43108582-43108601 Msa0358310:intron 35.0%
AAGTCAAGATCCAAAACAGA+AGG - chr3_1:43108840-43108859 Msa0358310:intron 35.0%
AGTCAAGATCCAAAACAGAA+GGG - chr3_1:43108841-43108860 Msa0358310:intron 35.0%
CATCTTATACCTTTCCATCA+TGG - chr3_1:43109267-43109286 Msa0358310:CDS 35.0%
!! GTTCATTTTCCATGATGGAA+AGG + chr3_1:43109279-43109298 None:intergenic 35.0%
AAAATGAACAATGTAAGCCG+AGG - chr3_1:43109290-43109309 Msa0358310:CDS 35.0%
GAGACTAAGAGGTAACTAAT+AGG + chr3_1:43109317-43109336 None:intergenic 35.0%
!! TGATTTGCTCTATTTGTTGG+TGG - chr3_1:43109361-43109380 Msa0358310:intron 35.0%
TCGATGCAACATGATAAAAG+AGG + chr3_1:43109428-43109447 None:intergenic 35.0%
ATACACCAGAAAAAATTCGG+TGG - chr3_1:43109484-43109503 Msa0358310:intron 35.0%
TACACCAGAAAAAATTCGGT+GGG - chr3_1:43109485-43109504 Msa0358310:intron 35.0%
!! TGGTTTGTTACCACATACAT+TGG + chr3_1:43109577-43109596 None:intergenic 35.0%
! TTTTCTTCTTGAATGGCTCA+TGG - chr3_1:43109667-43109686 Msa0358310:intron 35.0%
! CATTGAAGCTCAGATTTTCT+GGG + chr3_1:43109809-43109828 None:intergenic 35.0%
TAATTTACGAAGGGAAACCA+GGG + chr3_1:43109978-43109997 None:intergenic 35.0%
ATAATTTACGAAGGGAAACC+AGG + chr3_1:43109979-43109998 None:intergenic 35.0%
GTCTAAACTCAAATGAGTGT+AGG + chr3_1:43110231-43110250 None:intergenic 35.0%
! GGAATCCATACACATTGATT+TGG - chr3_1:43110270-43110289 Msa0358310:intron 35.0%
GATTTGGCTATTCTAGATTG+AGG - chr3_1:43110286-43110305 Msa0358310:intron 35.0%
AAAGGGAGAAATGTCTAAGA+TGG + chr3_1:43110486-43110505 None:intergenic 35.0%
CAAAATATCCACTTGAAGGT+AGG + chr3_1:43110524-43110543 None:intergenic 35.0%
!! CAGAAGTACCTTTATGCTTA+AGG - chr3_1:43110653-43110672 Msa0358310:intron 35.0%
AGCATCAACCTTAAGCATAA+AGG + chr3_1:43110664-43110683 None:intergenic 35.0%
TCTAGATGCTCAAGGTTAAT+TGG - chr3_1:43110726-43110745 Msa0358310:intron 35.0%
!! TGGCCAACAATTTGTTAGTT+TGG - chr3_1:43110840-43110859 Msa0358310:intron 35.0%
CGAGAATCTATGTACAAAGT+TGG - chr3_1:43111000-43111019 Msa0358310:intron 35.0%
GTATGCAACTACTAGAAACA+CGG + chr3_1:43111113-43111132 None:intergenic 35.0%
GGTTATTCATGTGAATATGC+AGG - chr3_1:43111178-43111197 Msa0358310:intron 35.0%
!! GGTCTCTTTTTCATTTGGAC+TGG + chr3_1:43107144-43107163 None:intergenic 40.0%
!! AACATGCAGGCTCTTTTTCA+TGG + chr3_1:43107165-43107184 None:intergenic 40.0%
TGAAAAAGAGCCTGCATGTT+AGG - chr3_1:43107165-43107184 Msa0358310:CDS 40.0%
TTAGTGACTGTAATTCCCCT+TGG - chr3_1:43107315-43107334 Msa0358310:intron 40.0%
! CAAATTTTGCAGGCTGATAG+AGG - chr3_1:43108150-43108169 Msa0358310:intron 40.0%
ATTGCTGTATTGCATTGCAG+TGG - chr3_1:43108243-43108262 Msa0358310:intron 40.0%
TTGCTGTATTGCATTGCAGT+GGG - chr3_1:43108244-43108263 Msa0358310:intron 40.0%
! ATAATGGAACAAGCCCTTAC+TGG - chr3_1:43108394-43108413 Msa0358310:intron 40.0%
! AATGGCCAGTCTTGGTAATA+AGG + chr3_1:43108510-43108529 None:intergenic 40.0%
ACTCACGCAATTCATATGGT+CGG + chr3_1:43108730-43108749 None:intergenic 40.0%
TGCGTGAGTTTATCCATTTG+AGG - chr3_1:43108741-43108760 Msa0358310:intron 40.0%
! TCCATTTGAGGCATTCTTGA+TGG - chr3_1:43108753-43108772 Msa0358310:intron 40.0%
TCCATCAAGAATGCCTCAAA+TGG + chr3_1:43108757-43108776 None:intergenic 40.0%
CAAAATGATTCTTCCCAGTC+AGG - chr3_1:43108780-43108799 Msa0358310:intron 40.0%
TTGAAGAGTAAGACACCAGA+AGG + chr3_1:43108822-43108841 None:intergenic 40.0%
TAACCCCTCCAACTAGAAAA+GGG - chr3_1:43108874-43108893 Msa0358310:intron 40.0%
!!! TATCCCCTTTTCTAGTTGGA+GGG + chr3_1:43108881-43108900 None:intergenic 40.0%
!!! ATATCCCCTTTTCTAGTTGG+AGG + chr3_1:43108882-43108901 None:intergenic 40.0%
!! GTCATATCCCCTTTTCTAGT+TGG + chr3_1:43108885-43108904 None:intergenic 40.0%
! CATGTACATGTTAGGTTGTG+AGG + chr3_1:43109155-43109174 None:intergenic 40.0%
AGAGGTAACTAATAGGTCCT+CGG + chr3_1:43109310-43109329 None:intergenic 40.0%
GTGGTAACAAACCATTCTAC+TGG - chr3_1:43109583-43109602 Msa0358310:intron 40.0%
!! GACTGCAATCGATAGTTTTG+AGG - chr3_1:43109689-43109708 Msa0358310:intron 40.0%
! GCATTGAAGCTCAGATTTTC+TGG + chr3_1:43109810-43109829 None:intergenic 40.0%
TGATTGAACCTACCTTCAAG+TGG - chr3_1:43110513-43110532 Msa0358310:intron 40.0%
! GGAGAAAGTACATCATCCAA+GGG + chr3_1:43110783-43110802 None:intergenic 40.0%
! TGGAGAAAGTACATCATCCA+AGG + chr3_1:43110784-43110803 None:intergenic 40.0%
! TGAGCTTCCCAATGTTTCTA+AGG - chr3_1:43111052-43111071 Msa0358310:intron 40.0%
AGTTGCATACACGAGAAACA+CGG - chr3_1:43111123-43111142 Msa0358310:intron 40.0%
GTATTGTGTCTGACTGCATG+TGG - chr3_1:43107280-43107299 Msa0358310:CDS 45.0%
AGTATTCAGCAGGGTCTGTT+TGG + chr3_1:43107697-43107716 None:intergenic 45.0%
!! CATTCAAGTACTGGGTGTTG+AGG + chr3_1:43107959-43107978 None:intergenic 45.0%
TCCTACTGATCTTGTCAGTG+TGG - chr3_1:43108091-43108110 Msa0358310:intron 45.0%
CCTACTGATCTTGTCAGTGT+GGG - chr3_1:43108092-43108111 Msa0358310:intron 45.0%
! AGGCTGATAGAGGCATATCT+TGG - chr3_1:43108160-43108179 Msa0358310:intron 45.0%
! TGATAGAGGCATATCTTGGC+AGG - chr3_1:43108164-43108183 Msa0358310:intron 45.0%
TATCTTGGCAGGACCGTTAT+TGG - chr3_1:43108175-43108194 Msa0358310:intron 45.0%
ATCTTGGCAGGACCGTTATT+GGG - chr3_1:43108176-43108195 Msa0358310:intron 45.0%
!! TTGTCGACTAGTCTGAGACT+AGG + chr3_1:43108446-43108465 None:intergenic 45.0%
! TAGTCTCAGACTAGTCGACA+AGG - chr3_1:43108445-43108464 Msa0358310:intron 45.0%
! AGTCTCAGACTAGTCGACAA+GGG - chr3_1:43108446-43108465 Msa0358310:intron 45.0%
TGCACACCACTTGTTTGTCA+TGG + chr3_1:43108546-43108565 None:intergenic 45.0%
CTCACGCAATTCATATGGTC+GGG + chr3_1:43108729-43108748 None:intergenic 45.0%
! CTTGAGCTTCCCTTCTGTTT+TGG + chr3_1:43108853-43108872 None:intergenic 45.0%
CTAACCCCTCCAACTAGAAA+AGG - chr3_1:43108873-43108892 Msa0358310:intron 45.0%
AACCCCTCCAACTAGAAAAG+GGG - chr3_1:43108875-43108894 Msa0358310:intron 45.0%
!!! ATCCCCTTTTCTAGTTGGAG+GGG + chr3_1:43108880-43108899 None:intergenic 45.0%
! TACATGTATTTGCTGCCGAC+AGG - chr3_1:43109169-43109188 Msa0358310:intron 45.0%
!! TTATCCATAGACTGGCCTGT+CGG + chr3_1:43109187-43109206 None:intergenic 45.0%
TACCTCTTAGTCTCGTAGTG+AGG - chr3_1:43109323-43109342 Msa0358310:intron 45.0%
!! TTGCTCTATTTGTTGGTGGC+AGG - chr3_1:43109365-43109384 Msa0358310:intron 45.0%
!! ACATGACACTGCGTCGATTA+CGG - chr3_1:43109448-43109467 Msa0358310:intron 45.0%
TGGAAATAGCTAACGTCTCC+AGG + chr3_1:43109557-43109576 None:intergenic 45.0%
!! GATTTTCTGGGCTAGGCTTT+GGG + chr3_1:43109797-43109816 None:intergenic 45.0%
!! AGATTTTCTGGGCTAGGCTT+TGG + chr3_1:43109798-43109817 None:intergenic 45.0%
! AAGCTCAGATTTTCTGGGCT+AGG + chr3_1:43109804-43109823 None:intergenic 45.0%
TCCTATCTTCAAGTCTACCC+TGG - chr3_1:43109958-43109977 Msa0358310:intron 45.0%
ACCAGGGTAGACTTGAAGAT+AGG + chr3_1:43109962-43109981 None:intergenic 45.0%
! CTCCTGCTTCTTTTGTGCTA+TGG - chr3_1:43110429-43110448 Msa0358310:intron 45.0%
CTCCATAGCACAAAAGAAGC+AGG + chr3_1:43110434-43110453 None:intergenic 45.0%
ATGAGAAGCCTGGCGATAAA+TGG - chr3_1:43111205-43111224 Msa0358310:intron 45.0%
TGAGAAGCCTGGCGATAAAT+GGG - chr3_1:43111206-43111225 Msa0358310:intron 45.0%
TAAATGGGACTTGCCAAGAG+TGG - chr3_1:43111221-43111240 Msa0358310:intron 45.0%
TGACTTATGGCGCATCTTTC+TGG - chr3_1:43111287-43111306 Msa0358310:intron 45.0%
GACTTATGGCGCATCTTTCT+GGG - chr3_1:43111288-43111307 Msa0358310:intron 45.0%
CTTTCTGGGTCCAATTGTTC+CGG - chr3_1:43111302-43111321 Msa0358310:intron 45.0%
!!! CACTGTTTTGCTTCTGAGAC+CGG + chr3_1:43111324-43111343 None:intergenic 45.0%
GCAAAACAGTGTTCTCCAAC+AGG - chr3_1:43111333-43111352 Msa0358310:intron 45.0%
GAAAACCAGGGTAATCCTGT+TGG + chr3_1:43111351-43111370 None:intergenic 45.0%
TTGGCGTGTGTTGAAAACCA+GGG + chr3_1:43111363-43111382 None:intergenic 45.0%
ATTGGCGTGTGTTGAAAACC+AGG + chr3_1:43111364-43111383 None:intergenic 45.0%
!! TATGATTATTTAATATTTAT+TGG - chr3_1:43108341-43108360 Msa0358310:intron 5.0%
AAGTCAAGGGTAAGGGCCAA+GGG + chr3_1:43107334-43107353 None:intergenic 50.0%
AAAGTCAAGGGTAAGGGCCA+AGG + chr3_1:43107335-43107354 None:intergenic 50.0%
!! GAATGTCGATTCTTCTGGGC+TGG - chr3_1:43107974-43107993 Msa0358310:intron 50.0%
CCCACACTGACAAGATCAGT+AGG + chr3_1:43108095-43108114 None:intergenic 50.0%
! TTGTCAGTGTGGGCTGAGAA+TGG - chr3_1:43108102-43108121 Msa0358310:intron 50.0%
!! GACTAGTCTGAGACTAGGAG+AGG + chr3_1:43108441-43108460 None:intergenic 50.0%
! GTCTCAGACTAGTCGACAAG+GGG - chr3_1:43108447-43108466 Msa0358310:intron 50.0%
AGCCTGTAGGACTTACCTTC+TGG - chr3_1:43108804-43108823 Msa0358310:intron 50.0%
CACCAGAAGGTAAGTCCTAC+AGG + chr3_1:43108809-43108828 None:intergenic 50.0%
AGCCTCACTACGAGACTAAG+AGG + chr3_1:43109328-43109347 None:intergenic 50.0%
GTGAGCAGGAATGTTGTGTG+TGG + chr3_1:43109393-43109412 None:intergenic 50.0%
GGAAGCAAACATGAGTGAGC+AGG + chr3_1:43109407-43109426 None:intergenic 50.0%
!!! GCGTCGATTACGGCATTTTC+TGG - chr3_1:43109458-43109477 Msa0358310:intron 50.0%
!!! GCAGCCCACCGAATTTTTTC+TGG + chr3_1:43109492-43109511 None:intergenic 50.0%
TGCAGGATTGATGAGAAGCC+TGG - chr3_1:43111195-43111214 Msa0358310:intron 50.0%
! AGAGCATCAACAGCCACTCT+TGG + chr3_1:43111237-43111256 None:intergenic 50.0%
AAGAGTGGCTGTTGATGCTC+TGG - chr3_1:43111236-43111255 Msa0358310:intron 50.0%
AGAGTGGCTGTTGATGCTCT+GGG - chr3_1:43111237-43111256 Msa0358310:intron 50.0%
!! GCTTCTGAGACCGGAACAAT+TGG + chr3_1:43111315-43111334 None:intergenic 50.0%
GTTCTCCAACAGGATTACCC+TGG - chr3_1:43111343-43111362 Msa0358310:intron 50.0%
AGTCAAGGGTAAGGGCCAAG+GGG + chr3_1:43107333-43107352 None:intergenic 55.0%
GCAGGACCGTTATTGGGTCA+AGG - chr3_1:43108182-43108201 Msa0358310:intron 55.0%
GAGCTGGGCATAGCCAGTAA+GGG + chr3_1:43108410-43108429 None:intergenic 55.0%
TGAGCTGGGCATAGCCAGTA+AGG + chr3_1:43108411-43108430 None:intergenic 55.0%
GGAGAGGTAACAGCTGAGCT+GGG + chr3_1:43108425-43108444 None:intergenic 55.0%
AGGAGAGGTAACAGCTGAGC+TGG + chr3_1:43108426-43108445 None:intergenic 55.0%
TTCCCAGTCAGGAAGCCTGT+AGG - chr3_1:43108791-43108810 Msa0358310:intron 55.0%
GTCCTACAGGCTTCCTGACT+GGG + chr3_1:43108796-43108815 None:intergenic 55.0%
AGTCCTACAGGCTTCCTGAC+TGG + chr3_1:43108797-43108816 None:intergenic 55.0%
GGCAAGTCCCATTTATCGCC+AGG + chr3_1:43111216-43111235 None:intergenic 55.0%
! TGCTCTGGGTGCTGCAATGC+TGG - chr3_1:43111251-43111270 Msa0358310:intron 60.0%
GCTGCCGACAGGCCAGTCTA+TGG - chr3_1:43109180-43109199 Msa0358310:intron 65.0%
!! GGTGGGCTGCTGAAGCTGCA+TGG - chr3_1:43109502-43109521 Msa0358310:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 43107121 43111392 43107121 ID=Msa0358310;Name=Msa0358310
chr3_1 mRNA 43107121 43111392 43107121 ID=Msa0358310-mRNA-1;Parent=Msa0358310;Name=Msa0358310-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.66|1|1|6|0|213
chr3_1 exon 43111387 43111392 43111387 ID=Msa0358310-mRNA-1:exon:7619;Parent=Msa0358310-mRNA-1
chr3_1 exon 43110310 43110351 43110310 ID=Msa0358310-mRNA-1:exon:7618;Parent=Msa0358310-mRNA-1
chr3_1 exon 43109212 43109322 43109212 ID=Msa0358310-mRNA-1:exon:7617;Parent=Msa0358310-mRNA-1
chr3_1 exon 43108935 43109126 43108935 ID=Msa0358310-mRNA-1:exon:7616;Parent=Msa0358310-mRNA-1
chr3_1 exon 43107440 43107537 43107440 ID=Msa0358310-mRNA-1:exon:7615;Parent=Msa0358310-mRNA-1
chr3_1 exon 43107121 43107313 43107121 ID=Msa0358310-mRNA-1:exon:7614;Parent=Msa0358310-mRNA-1
chr3_1 CDS 43111387 43111392 43111387 ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1
chr3_1 CDS 43110310 43110351 43110310 ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1
chr3_1 CDS 43109212 43109322 43109212 ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1
chr3_1 CDS 43108935 43109126 43108935 ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1
chr3_1 CDS 43107440 43107537 43107440 ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1
chr3_1 CDS 43107121 43107313 43107121 ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1
Gene Sequence

>Msa0358310

ATGAATGCTGATAGAGGCATATCTTGGCAGGACCGTTATTGGGTCAAGGCCAGTCTATGGATAATAATCTTCAGTTATGTTGGGAATTATTTCTGGACTCATTACTTTTTCACAGTTCTGGGTGCATCTTATACCTTTCCATCATGGAAAATGAACAATGTACCACACACAACATTCCTGCTCACTCATGTTTGCTTCCTCTTTTATCATGTTGCATCGAACATGACACTGCGTCGATTACGGCATTTTCTGGCTGATACACCAGAAAAAATTCGGTGGGCTGCTGAAGCTGCATGGATTCTCGCCCTTGCTTATTTTATAGCATACCTGGAGACGTTAGCTATTTCCAATTTCCCTTATTATGAATTTGTGGATCGAGAATCTATGTACAAAGTTGGATCATTGTTTTACGCAATCTACTTTATCGTGAGCTTCCCAATGTTTCTAAGGATTGATGAGAAGCCTGGCGATAAATGGGACTTGCCAAGAGTGGCTGTTGATGCTCTGGGTGCTGCAATGCTGGTCACAATAATACTTGACTTATGGCGCATCTTTCTGGGTCCAATTGTTCCGGTCTCAGAAGCAAAACAGTGTTCTCCAACAGGATTACCCTGGTTTTCAACACACGCCAATCTCACATGA

Protein sequence

>Msa0358310

MNADRGISWQDRYWVKASLWIIIFSYVGNYFWTHYFFTVLGASYTFPSWKMNNVPHTTFLLTHVCFLFYHVASNMTLRRLRHFLADTPEKIRWAAEAAWILALAYFIAYLETLAISNFPYYEFVDRESMYKVGSLFYAIYFIVSFPMFLRIDEKPGDKWDLPRVAVDALGAAMLVTIILDLWRIFLGPIVPVSEAKQCSPTGLPWFSTHANLT*