Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358310 | XP_003602089.1 | 99.057 | 212 | 2 | 0 | 2 | 213 | 96 | 307 | 5.56e-153 | 436 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358310 | sp|Q9M643|CCI1_ARATH | 79.710 | 207 | 42 | 0 | 2 | 208 | 74 | 280 | 3.60e-124 | 355 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358310 | G7J5I6 | 99.057 | 212 | 2 | 0 | 2 | 213 | 96 | 307 | 2.66e-153 | 436 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0168480 | Msa0358310 | 0.818206 | 2.212041e-52 | -8.615850e-47 |
Msa0307280 | Msa0358310 | 0.823816 | 1.129914e-53 | -8.615850e-47 |
Msa0358280 | Msa0358310 | 0.905658 | 3.401894e-80 | -8.615850e-47 |
Msa0358310 | Msa0465810 | 0.928157 | 4.293452e-92 | -8.615850e-47 |
Msa0358310 | Msa0484150 | 0.804268 | 2.343191e-49 | -8.615850e-47 |
Msa0358310 | Msa0562370 | 0.815306 | 9.892672e-52 | -8.615850e-47 |
Msa0358310 | Msa1037640 | 0.813624 | 2.329571e-51 | -8.615850e-47 |
Msa0358310 | Msa1072960 | 0.828208 | 1.021752e-54 | -8.615850e-47 |
Msa0358310 | Msa1160910 | 0.828684 | 7.841998e-55 | -8.615850e-47 |
Msa0358310 | Msa1357350 | 0.812260 | 4.635740e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358310 | MtrunA17_Chr3g0116181 | 99.057 | 212 | 2 | 0 | 2 | 213 | 74 | 285 | 3.24e-156 | 433 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358310 | AT5G50375.3 | 79.710 | 207 | 42 | 0 | 2 | 208 | 6 | 212 | 2.57e-126 | 355 |
Msa0358310 | AT5G50375.1 | 79.710 | 207 | 42 | 0 | 2 | 208 | 74 | 280 | 3.66e-125 | 355 |
Msa0358310 | AT5G50375.2 | 81.503 | 173 | 32 | 0 | 2 | 174 | 74 | 246 | 1.83e-104 | 303 |
Find 47 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGACTTATGGCGCATCTTTC+TGG | 0.013477 | 3_1:-43107204 | Msa0358310:CDS |
GTTATGTTGGGAATTATTTC+TGG | 0.136999 | 3_1:-43109275 | Msa0358310:CDS |
CGATCCACAAATTCATAATA+AGG | 0.203511 | 3_1:+43107512 | None:intergenic |
ATGAGAAGCCTGGCGATAAA+TGG | 0.259830 | 3_1:-43107286 | Msa0358310:CDS |
GACTTATGGCGCATCTTTCT+GGG | 0.315138 | 3_1:-43107203 | Msa0358310:CDS |
CTTTCTGGGTCCAATTGTTC+CGG | 0.326439 | 3_1:-43107189 | Msa0358310:CDS |
TATCTTGGCAGGACCGTTAT+TGG | 0.327717 | 3_1:-43110316 | Msa0358310:CDS |
AAGAGTGGCTGTTGATGCTC+TGG | 0.333145 | 3_1:-43107255 | Msa0358310:CDS |
TCACAATAATACTTGACTTA+TGG | 0.346712 | 3_1:-43107217 | Msa0358310:CDS |
TGAGCTTCCCAATGTTTCTA+AGG | 0.353587 | 3_1:-43107439 | Msa0358310:intron |
ATCTTGGCAGGACCGTTATT+GGG | 0.374611 | 3_1:-43110315 | Msa0358310:CDS |
TGCTCTGGGTGCTGCAATGC+TGG | 0.375660 | 3_1:-43107240 | Msa0358310:CDS |
ACATGACACTGCGTCGATTA+CGG | 0.378459 | 3_1:-43109043 | Msa0358310:CDS |
GCTGCCGACAGGCCAGTCTA+TGG | 0.400194 | 3_1:-43109311 | Msa0358310:intron |
GCTTCTGAGACCGGAACAAT+TGG | 0.402278 | 3_1:+43107179 | None:intergenic |
GTTCCCTTATTATGAATTTG+TGG | 0.419718 | 3_1:-43107516 | Msa0358310:CDS |
ATAATAATCTTCAGTTATGT+TGG | 0.432752 | 3_1:-43109288 | Msa0358310:CDS |
CATCTTATACCTTTCCATCA+TGG | 0.442559 | 3_1:-43109224 | Msa0358310:CDS |
AAACTTACCTTAGAAACATT+GGG | 0.450083 | 3_1:+43107432 | None:intergenic |
GCAAAACAGTGTTCTCCAAC+AGG | 0.453257 | 3_1:-43107158 | Msa0358310:CDS |
CGAGAATCTATGTACAAAGT+TGG | 0.454985 | 3_1:-43107491 | Msa0358310:CDS |
TAATAATCTTCAGTTATGTT+GGG | 0.455018 | 3_1:-43109287 | Msa0358310:CDS |
GGCAAGTCCCATTTATCGCC+AGG | 0.463076 | 3_1:+43107278 | None:intergenic |
AAAACTTACCTTAGAAACAT+TGG | 0.463283 | 3_1:+43107431 | None:intergenic |
TGCAGGATTGATGAGAAGCC+TGG | 0.467133 | 3_1:-43107296 | Msa0358310:intron |
TGAGAAGCCTGGCGATAAAT+GGG | 0.467332 | 3_1:-43107285 | Msa0358310:CDS |
GATCCACAAATTCATAATAA+GGG | 0.475328 | 3_1:+43107513 | None:intergenic |
TGGAAATAGCTAACGTCTCC+AGG | 0.481480 | 3_1:+43108937 | None:intergenic |
ACGTAATTCTCATGTGAGAT+TGG | 0.503741 | 3_1:+43107112 | None:intergenic |
CATTTACCTTGACCCAATAA+CGG | 0.503869 | 3_1:+43110303 | None:intergenic |
GGAAGCAAACATGAGTGAGC+AGG | 0.509168 | 3_1:+43109087 | None:intergenic |
AGGCTGATAGAGGCATATCT+TGG | 0.518841 | 3_1:-43110331 | Msa0358310:CDS |
AGAGTGGCTGTTGATGCTCT+GGG | 0.523207 | 3_1:-43107254 | Msa0358310:CDS |
AGAGCATCAACAGCCACTCT+TGG | 0.534026 | 3_1:+43107257 | None:intergenic |
TGATAGAGGCATATCTTGGC+AGG | 0.534646 | 3_1:-43110327 | Msa0358310:CDS |
GAAGATTATTATCCATAGAC+TGG | 0.537540 | 3_1:+43109299 | None:intergenic |
GGTGGGCTGCTGAAGCTGCA+TGG | 0.560758 | 3_1:-43108989 | Msa0358310:CDS |
GGTATGCTATAAAATAAGCA+AGG | 0.582491 | 3_1:+43108958 | None:intergenic |
GCAGGACCGTTATTGGGTCA+AGG | 0.582907 | 3_1:-43110309 | Msa0358310:intron |
GAAAACCAGGGTAATCCTGT+TGG | 0.584944 | 3_1:+43107143 | None:intergenic |
GTTCTCCAACAGGATTACCC+TGG | 0.614928 | 3_1:-43107148 | Msa0358310:CDS |
TCGATGCAACATGATAAAAG+AGG | 0.621052 | 3_1:+43109066 | None:intergenic |
ATTGGCGTGTGTTGAAAACC+AGG | 0.623943 | 3_1:+43107130 | None:intergenic |
TAAATGGGACTTGCCAAGAG+TGG | 0.629905 | 3_1:-43107270 | Msa0358310:CDS |
GTATGCTATAAAATAAGCAA+GGG | 0.656470 | 3_1:+43108959 | None:intergenic |
TTGGCGTGTGTTGAAAACCA+GGG | 0.733461 | 3_1:+43107131 | None:intergenic |
GTGAGCAGGAATGTTGTGTG+TGG | 0.771197 | 3_1:+43109101 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTCAAAAAATAATTTTCTT+AGG | - | chr3_1:43108370-43108389 | Msa0358310:intron | 10.0% |
!! | ATTAAATAAATATGTATATG+TGG | + | chr3_1:43109121-43109140 | None:intergenic | 10.0% |
!!! | GATTGACTTATTTAAATTTA+GGG | + | chr3_1:43107644-43107663 | None:intergenic | 15.0% |
!!! | TTTTTTGGATATTATGATAA+AGG | - | chr3_1:43109038-43109057 | Msa0358310:CDS | 15.0% |
!! | ACATATTTATTTAATTCTGT+TGG | - | chr3_1:43109126-43109145 | Msa0358310:intron | 15.0% |
!! | TTATTATTATGATCTTTGTT+TGG | - | chr3_1:43109609-43109628 | Msa0358310:intron | 15.0% |
!! | GTAAATTATTTGAATTGTTA+TGG | - | chr3_1:43109990-43110009 | Msa0358310:intron | 15.0% |
!!! | TGTTGATTGTAATATTTTTT+AGG | - | chr3_1:43110183-43110202 | Msa0358310:intron | 15.0% |
!! | TTGCCAAAAAATATAAAAAA+GGG | + | chr3_1:43110390-43110409 | None:intergenic | 15.0% |
!! | TTTGCCAAAAAATATAAAAA+AGG | + | chr3_1:43110391-43110410 | None:intergenic | 15.0% |
!! | ATAATGTTATTGTTATGTAT+TGG | - | chr3_1:43110943-43110962 | Msa0358310:intron | 15.0% |
!!! | GGATTGACTTATTTAAATTT+AGG | + | chr3_1:43107645-43107664 | None:intergenic | 20.0% |
!! | GATATTCATACTTATTAACA+AGG | - | chr3_1:43108012-43108031 | Msa0358310:intron | 20.0% |
!!! | GAAGAAGATAAACTATTTTT+TGG | + | chr3_1:43108068-43108087 | None:intergenic | 20.0% |
!!! | AATCATATATCAAATTTTGC+AGG | - | chr3_1:43108140-43108159 | Msa0358310:intron | 20.0% |
!! | AATACAGCAATGTAAATATT+TGG | + | chr3_1:43108234-43108253 | None:intergenic | 20.0% |
!!! | AATAATTTTCTTAGGCATAA+TGG | - | chr3_1:43108378-43108397 | Msa0358310:intron | 20.0% |
!! | ATAAGGAAAATAGAATTTGA+GGG | + | chr3_1:43108493-43108512 | None:intergenic | 20.0% |
!! | AATAAGGAAAATAGAATTTG+AGG | + | chr3_1:43108494-43108513 | None:intergenic | 20.0% |
!! | TACTTTGCACTTTATTATTA+GGG | + | chr3_1:43108644-43108663 | None:intergenic | 20.0% |
!! | ATACTTTGCACTTTATTATT+AGG | + | chr3_1:43108645-43108664 | None:intergenic | 20.0% |
!! | AAGAAACTAAACATAACAAA+AGG | - | chr3_1:43108703-43108722 | Msa0358310:intron | 20.0% |
!!! | CTAAGTAGTAAAATCATTTT+AGG | + | chr3_1:43109001-43109020 | None:intergenic | 20.0% |
!! | ATAATAATCTTCAGTTATGT+TGG | - | chr3_1:43109203-43109222 | Msa0358310:intron | 20.0% |
!! | TAATAATCTTCAGTTATGTT+GGG | - | chr3_1:43109204-43109223 | Msa0358310:intron | 20.0% |
!! | AATAATAAAAACCAGTAGAA+TGG | + | chr3_1:43109597-43109616 | None:intergenic | 20.0% |
!!! | TGCATTTTTGGATATATTTA+TGG | - | chr3_1:43109635-43109654 | Msa0358310:intron | 20.0% |
!! | CAATTCAAATAATTTACGAA+GGG | + | chr3_1:43109987-43110006 | None:intergenic | 20.0% |
!! | ACAATTCAAATAATTTACGA+AGG | + | chr3_1:43109988-43110007 | None:intergenic | 20.0% |
!! | TGCCAAAAAATATAAAAAAG+GGG | + | chr3_1:43110389-43110408 | None:intergenic | 20.0% |
!! | ACAAGAAAATATATGAAGAT+AGG | + | chr3_1:43110577-43110596 | None:intergenic | 20.0% |
!! | AATTTCTCAAATAGAAGAAA+TGG | + | chr3_1:43110804-43110823 | None:intergenic | 20.0% |
! | TTAGAATACTCCTATTACTT+AGG | - | chr3_1:43107208-43107227 | Msa0358310:CDS | 25.0% |
! | AATTCCTATCATAAAGTCAA+GGG | + | chr3_1:43107347-43107366 | None:intergenic | 25.0% |
! | TAATTCCTATCATAAAGTCA+AGG | + | chr3_1:43107348-43107367 | None:intergenic | 25.0% |
!! | ATTTAAATTTAGGGTCTGTT+TGG | + | chr3_1:43107666-43107685 | None:intergenic | 25.0% |
! | TTACAAATAAGTATTCAGCA+GGG | + | chr3_1:43107706-43107725 | None:intergenic | 25.0% |
!! | ACTGTTTTCATAAGCTATTT+TGG | - | chr3_1:43107780-43107799 | Msa0358310:intron | 25.0% |
! | CACAAACTTAATGCAAAAAA+TGG | + | chr3_1:43107880-43107899 | None:intergenic | 25.0% |
!! | ATTTATGCTATGGCAATTTT+TGG | - | chr3_1:43107919-43107938 | Msa0358310:intron | 25.0% |
! | TGAATATCAGCATAAAAAGT+GGG | + | chr3_1:43108000-43108019 | None:intergenic | 25.0% |
! | ATGAATATCAGCATAAAAAG+TGG | + | chr3_1:43108001-43108020 | None:intergenic | 25.0% |
! | TAAAAAACTGCATAACTCAT+CGG | + | chr3_1:43108039-43108058 | None:intergenic | 25.0% |
!!! | GTCAAGGTAAATGTTTTTAT+AGG | - | chr3_1:43108198-43108217 | Msa0358310:intron | 25.0% |
! | TGTCATTGAATCATAAATGA+AGG | + | chr3_1:43108272-43108291 | None:intergenic | 25.0% |
! | CATTTATGATTCAATGACAT+TGG | - | chr3_1:43108273-43108292 | Msa0358310:intron | 25.0% |
! | CATGGTTTCAAATACTTTAA+TGG | + | chr3_1:43108528-43108547 | None:intergenic | 25.0% |
! | TGCATTAACATGATTGAAAA+GGG | + | chr3_1:43108684-43108703 | None:intergenic | 25.0% |
! | TTGCATTAACATGATTGAAA+AGG | + | chr3_1:43108685-43108704 | None:intergenic | 25.0% |
! | TAAATCTGAATGTAGATGAA+AGG | + | chr3_1:43108966-43108985 | None:intergenic | 25.0% |
!!! | GTGTTATTGTTGCTATTTTT+TGG | - | chr3_1:43109023-43109042 | Msa0358310:CDS | 25.0% |
! | TGGATATTATGATAAAGGAA+TGG | - | chr3_1:43109043-43109062 | Msa0358310:CDS | 25.0% |
! | AGCACAATAAATCCATAATT+AGG | + | chr3_1:43109095-43109114 | None:intergenic | 25.0% |
! | GTATGCTATAAAATAAGCAA+GGG | + | chr3_1:43109535-43109554 | None:intergenic | 25.0% |
!!! | CTATTGTTATTTTCGTAGTT+AGG | - | chr3_1:43109871-43109890 | Msa0358310:intron | 25.0% |
! | ATAAAACAAAGTTGCAGAAA+GGG | + | chr3_1:43109902-43109921 | None:intergenic | 25.0% |
! | AGGCTGATATATGAAAATTA+TGG | + | chr3_1:43110211-43110230 | None:intergenic | 25.0% |
!!! | ACATGTGTAAAGACATTTTT+TGG | - | chr3_1:43110249-43110268 | Msa0358310:intron | 25.0% |
!!! | TCAGTATTTAGCTTTTACAT+TGG | - | chr3_1:43110316-43110335 | Msa0358310:CDS | 25.0% |
!!! | TCCCCCTTTTTTATATTTTT+TGG | - | chr3_1:43110384-43110403 | Msa0358310:intron | 25.0% |
! | GCCAAAAAATATAAAAAAGG+GGG | + | chr3_1:43110388-43110407 | None:intergenic | 25.0% |
! | TAAATACGTCAAAGAATTAG+AGG | + | chr3_1:43110457-43110476 | None:intergenic | 25.0% |
! | GGTTCAATCAAAAGAAAAAA+GGG | + | chr3_1:43110503-43110522 | None:intergenic | 25.0% |
! | AGGTTCAATCAAAAGAAAAA+AGG | + | chr3_1:43110504-43110523 | None:intergenic | 25.0% |
! | ATATCAAAATATCCACTTGA+AGG | + | chr3_1:43110528-43110547 | None:intergenic | 25.0% |
!!! | GCTTAAAATTTGATTTTGCT+AGG | - | chr3_1:43110681-43110700 | Msa0358310:intron | 25.0% |
!! | AATTTTCTCAATCACTCTTT+TGG | - | chr3_1:43110820-43110839 | Msa0358310:intron | 25.0% |
! | TTACCAAACTAACAAATTGT+TGG | + | chr3_1:43110846-43110865 | None:intergenic | 25.0% |
! | AAACGTACATTACATATTGA+AGG | + | chr3_1:43110917-43110936 | None:intergenic | 25.0% |
! | GATCCACAAATTCATAATAA+GGG | + | chr3_1:43110981-43111000 | None:intergenic | 25.0% |
! | AAACTTACCTTAGAAACATT+GGG | + | chr3_1:43111062-43111081 | None:intergenic | 25.0% |
! | AAAACTTACCTTAGAAACAT+TGG | + | chr3_1:43111063-43111082 | None:intergenic | 25.0% |
! | CATTGTACTAATCTTATTGA+TGG | - | chr3_1:43111157-43111176 | Msa0358310:intron | 25.0% |
! | TCACAATAATACTTGACTTA+TGG | - | chr3_1:43111274-43111293 | Msa0358310:intron | 25.0% |
!! | TTCATGGTCTCTTTTTCATT+TGG | + | chr3_1:43107149-43107168 | None:intergenic | 30.0% |
TATTAGAGAGCCTAAGTAAT+AGG | + | chr3_1:43107221-43107240 | None:intergenic | 30.0% | |
ACTTAATCACCTTCTCATAT+TGG | - | chr3_1:43107244-43107263 | Msa0358310:CDS | 30.0% | |
CTTAATCACCTTCTCATATT+GGG | - | chr3_1:43107245-43107264 | Msa0358310:CDS | 30.0% | |
TGTATATACCCAATATGAGA+AGG | + | chr3_1:43107256-43107275 | None:intergenic | 30.0% | |
TCTCATATTGGGTATATACA+TGG | - | chr3_1:43107256-43107275 | Msa0358310:CDS | 30.0% | |
ATTACAGTCACTAATTCTCA+TGG | + | chr3_1:43107309-43107328 | None:intergenic | 30.0% | |
TATCATAAAGTCAAGGGTAA+GGG | + | chr3_1:43107341-43107360 | None:intergenic | 30.0% | |
CTTACAAATAAGTATTCAGC+AGG | + | chr3_1:43107707-43107726 | None:intergenic | 30.0% | |
ACCCTATTACATTTATGCTA+TGG | - | chr3_1:43107909-43107928 | Msa0358310:intron | 30.0% | |
GCCATAGCATAAATGTAATA+GGG | + | chr3_1:43107913-43107932 | None:intergenic | 30.0% | |
TGCCATAGCATAAATGTAAT+AGG | + | chr3_1:43107914-43107933 | None:intergenic | 30.0% | |
! | ATTTTCCTTATTACCAAGAC+TGG | - | chr3_1:43108502-43108521 | Msa0358310:intron | 30.0% |
GTGCACATTTGACATTATAT+TGG | - | chr3_1:43108561-43108580 | Msa0358310:intron | 30.0% | |
CATTAACATGATTGAAAAGG+GGG | + | chr3_1:43108682-43108701 | None:intergenic | 30.0% | |
GCATTAACATGATTGAAAAG+GGG | + | chr3_1:43108683-43108702 | None:intergenic | 30.0% | |
ATAAACTCACGCAATTCATA+TGG | + | chr3_1:43108734-43108753 | None:intergenic | 30.0% | |
! | TATTTTTCATGTCTTGATCG+AGG | - | chr3_1:43108921-43108940 | Msa0358310:intron | 30.0% |
! | ATTTTTCATGTCTTGATCGA+GGG | - | chr3_1:43108922-43108941 | Msa0358310:intron | 30.0% |
CTACTTTAGACTCCTAATTA+TGG | - | chr3_1:43109080-43109099 | Msa0358310:CDS | 30.0% | |
AGCAAATACATGTACATGTT+AGG | + | chr3_1:43109163-43109182 | None:intergenic | 30.0% | |
GAAGATTATTATCCATAGAC+TGG | + | chr3_1:43109195-43109214 | None:intergenic | 30.0% | |
GTTATGTTGGGAATTATTTC+TGG | - | chr3_1:43109216-43109235 | Msa0358310:CDS | 30.0% | |
!!! | TCATTACTTTTTCACAGTTC+TGG | - | chr3_1:43109241-43109260 | Msa0358310:CDS | 30.0% |
!!! | CATTACTTTTTCACAGTTCT+GGG | - | chr3_1:43109242-43109261 | Msa0358310:CDS | 30.0% |
! | ACATTGTTCATTTTCCATGA+TGG | + | chr3_1:43109284-43109303 | None:intergenic | 30.0% |
!! | CATTGATTTGCTCTATTTGT+TGG | - | chr3_1:43109358-43109377 | Msa0358310:intron | 30.0% |
CTGATACACCAGAAAAAATT+CGG | - | chr3_1:43109481-43109500 | Msa0358310:intron | 30.0% | |
GGTATGCTATAAAATAAGCA+AGG | + | chr3_1:43109536-43109555 | None:intergenic | 30.0% | |
!!! | TGCTTATTTTATAGCATACC+TGG | - | chr3_1:43109536-43109555 | Msa0358310:intron | 30.0% |
! | TTAGCTATTTCCAATGTATG+TGG | - | chr3_1:43109564-43109583 | Msa0358310:intron | 30.0% |
! | TTTGTTTGGTCATGCATTTT+TGG | - | chr3_1:43109623-43109642 | Msa0358310:intron | 30.0% |
! | TGCAATCTTTTCTTCTTGAA+TGG | - | chr3_1:43109660-43109679 | Msa0358310:intron | 30.0% |
CAATGCATTTGTACATTTCA+AGG | - | chr3_1:43109824-43109843 | Msa0358310:intron | 30.0% | |
CATAAAACAAAGTTGCAGAA+AGG | + | chr3_1:43109903-43109922 | None:intergenic | 30.0% | |
AATAGCCAAATCAATGTGTA+TGG | + | chr3_1:43110278-43110297 | None:intergenic | 30.0% | |
TGAAGATAGGAAATTTCTGA+AGG | + | chr3_1:43110564-43110583 | None:intergenic | 30.0% | |
TACTTAATTCTAGATGCTCA+AGG | - | chr3_1:43110718-43110737 | Msa0358310:intron | 30.0% | |
!!! | TGGTTAGTTTTTTCTTTGCA+TGG | - | chr3_1:43110746-43110765 | Msa0358310:intron | 30.0% |
!!! | CATGGATTATTTTTATCCCT+TGG | - | chr3_1:43110764-43110783 | Msa0358310:intron | 30.0% |
CATTACATATTGAAGGTCAA+AGG | + | chr3_1:43110910-43110929 | None:intergenic | 30.0% | |
GTTCCCTTATTATGAATTTG+TGG | - | chr3_1:43110975-43110994 | Msa0358310:intron | 30.0% | |
CGATCCACAAATTCATAATA+AGG | + | chr3_1:43110982-43111001 | None:intergenic | 30.0% | |
!! | GTCTCTTTTTCATTTGGACT+GGG | + | chr3_1:43107143-43107162 | None:intergenic | 35.0% |
TATATTGTGACCTAACATGC+AGG | + | chr3_1:43107178-43107197 | None:intergenic | 35.0% | |
GCATGTTAGGTCACAATATA+AGG | - | chr3_1:43107178-43107197 | Msa0358310:CDS | 35.0% | |
CTATCATAAAGTCAAGGGTA+AGG | + | chr3_1:43107342-43107361 | None:intergenic | 35.0% | |
CTTACCCTTGACTTTATGAT+AGG | - | chr3_1:43107340-43107359 | Msa0358310:intron | 35.0% | |
AGTCTCACAAAACTTATGTC+AGG | - | chr3_1:43107618-43107637 | Msa0358310:intron | 35.0% | |
CTCAAATAAACTAACCCTGA+TGG | - | chr3_1:43107854-43107873 | Msa0358310:intron | 35.0% | |
AATGCAAAAAATGGCCATCA+GGG | + | chr3_1:43107871-43107890 | None:intergenic | 35.0% | |
TAATGCAAAAAATGGCCATC+AGG | + | chr3_1:43107872-43107891 | None:intergenic | 35.0% | |
AGAATCGACATTCAAGTACT+GGG | + | chr3_1:43107967-43107986 | None:intergenic | 35.0% | |
AAGAATCGACATTCAAGTAC+TGG | + | chr3_1:43107968-43107987 | None:intergenic | 35.0% | |
!! | TACTTGAATGTCGATTCTTC+TGG | - | chr3_1:43107969-43107988 | Msa0358310:intron | 35.0% |
!! | ACTTGAATGTCGATTCTTCT+GGG | - | chr3_1:43107970-43107989 | Msa0358310:intron | 35.0% |
CATTTACCTTGACCCAATAA+CGG | + | chr3_1:43108191-43108210 | None:intergenic | 35.0% | |
AATACTTTAATGGCCAGTCT+TGG | + | chr3_1:43108518-43108537 | None:intergenic | 35.0% | |
TTGAAACCATGACAAACAAG+TGG | - | chr3_1:43108537-43108556 | Msa0358310:intron | 35.0% | |
!! | GGTGTTATTCGTCTTGTATT+TGG | - | chr3_1:43108582-43108601 | Msa0358310:intron | 35.0% |
AAGTCAAGATCCAAAACAGA+AGG | - | chr3_1:43108840-43108859 | Msa0358310:intron | 35.0% | |
AGTCAAGATCCAAAACAGAA+GGG | - | chr3_1:43108841-43108860 | Msa0358310:intron | 35.0% | |
CATCTTATACCTTTCCATCA+TGG | - | chr3_1:43109267-43109286 | Msa0358310:CDS | 35.0% | |
!! | GTTCATTTTCCATGATGGAA+AGG | + | chr3_1:43109279-43109298 | None:intergenic | 35.0% |
AAAATGAACAATGTAAGCCG+AGG | - | chr3_1:43109290-43109309 | Msa0358310:CDS | 35.0% | |
GAGACTAAGAGGTAACTAAT+AGG | + | chr3_1:43109317-43109336 | None:intergenic | 35.0% | |
!! | TGATTTGCTCTATTTGTTGG+TGG | - | chr3_1:43109361-43109380 | Msa0358310:intron | 35.0% |
TCGATGCAACATGATAAAAG+AGG | + | chr3_1:43109428-43109447 | None:intergenic | 35.0% | |
ATACACCAGAAAAAATTCGG+TGG | - | chr3_1:43109484-43109503 | Msa0358310:intron | 35.0% | |
TACACCAGAAAAAATTCGGT+GGG | - | chr3_1:43109485-43109504 | Msa0358310:intron | 35.0% | |
!! | TGGTTTGTTACCACATACAT+TGG | + | chr3_1:43109577-43109596 | None:intergenic | 35.0% |
! | TTTTCTTCTTGAATGGCTCA+TGG | - | chr3_1:43109667-43109686 | Msa0358310:intron | 35.0% |
! | CATTGAAGCTCAGATTTTCT+GGG | + | chr3_1:43109809-43109828 | None:intergenic | 35.0% |
TAATTTACGAAGGGAAACCA+GGG | + | chr3_1:43109978-43109997 | None:intergenic | 35.0% | |
ATAATTTACGAAGGGAAACC+AGG | + | chr3_1:43109979-43109998 | None:intergenic | 35.0% | |
GTCTAAACTCAAATGAGTGT+AGG | + | chr3_1:43110231-43110250 | None:intergenic | 35.0% | |
! | GGAATCCATACACATTGATT+TGG | - | chr3_1:43110270-43110289 | Msa0358310:intron | 35.0% |
GATTTGGCTATTCTAGATTG+AGG | - | chr3_1:43110286-43110305 | Msa0358310:intron | 35.0% | |
AAAGGGAGAAATGTCTAAGA+TGG | + | chr3_1:43110486-43110505 | None:intergenic | 35.0% | |
CAAAATATCCACTTGAAGGT+AGG | + | chr3_1:43110524-43110543 | None:intergenic | 35.0% | |
!! | CAGAAGTACCTTTATGCTTA+AGG | - | chr3_1:43110653-43110672 | Msa0358310:intron | 35.0% |
AGCATCAACCTTAAGCATAA+AGG | + | chr3_1:43110664-43110683 | None:intergenic | 35.0% | |
TCTAGATGCTCAAGGTTAAT+TGG | - | chr3_1:43110726-43110745 | Msa0358310:intron | 35.0% | |
!! | TGGCCAACAATTTGTTAGTT+TGG | - | chr3_1:43110840-43110859 | Msa0358310:intron | 35.0% |
CGAGAATCTATGTACAAAGT+TGG | - | chr3_1:43111000-43111019 | Msa0358310:intron | 35.0% | |
GTATGCAACTACTAGAAACA+CGG | + | chr3_1:43111113-43111132 | None:intergenic | 35.0% | |
GGTTATTCATGTGAATATGC+AGG | - | chr3_1:43111178-43111197 | Msa0358310:intron | 35.0% | |
!! | GGTCTCTTTTTCATTTGGAC+TGG | + | chr3_1:43107144-43107163 | None:intergenic | 40.0% |
!! | AACATGCAGGCTCTTTTTCA+TGG | + | chr3_1:43107165-43107184 | None:intergenic | 40.0% |
TGAAAAAGAGCCTGCATGTT+AGG | - | chr3_1:43107165-43107184 | Msa0358310:CDS | 40.0% | |
TTAGTGACTGTAATTCCCCT+TGG | - | chr3_1:43107315-43107334 | Msa0358310:intron | 40.0% | |
! | CAAATTTTGCAGGCTGATAG+AGG | - | chr3_1:43108150-43108169 | Msa0358310:intron | 40.0% |
ATTGCTGTATTGCATTGCAG+TGG | - | chr3_1:43108243-43108262 | Msa0358310:intron | 40.0% | |
TTGCTGTATTGCATTGCAGT+GGG | - | chr3_1:43108244-43108263 | Msa0358310:intron | 40.0% | |
! | ATAATGGAACAAGCCCTTAC+TGG | - | chr3_1:43108394-43108413 | Msa0358310:intron | 40.0% |
! | AATGGCCAGTCTTGGTAATA+AGG | + | chr3_1:43108510-43108529 | None:intergenic | 40.0% |
ACTCACGCAATTCATATGGT+CGG | + | chr3_1:43108730-43108749 | None:intergenic | 40.0% | |
TGCGTGAGTTTATCCATTTG+AGG | - | chr3_1:43108741-43108760 | Msa0358310:intron | 40.0% | |
! | TCCATTTGAGGCATTCTTGA+TGG | - | chr3_1:43108753-43108772 | Msa0358310:intron | 40.0% |
TCCATCAAGAATGCCTCAAA+TGG | + | chr3_1:43108757-43108776 | None:intergenic | 40.0% | |
CAAAATGATTCTTCCCAGTC+AGG | - | chr3_1:43108780-43108799 | Msa0358310:intron | 40.0% | |
TTGAAGAGTAAGACACCAGA+AGG | + | chr3_1:43108822-43108841 | None:intergenic | 40.0% | |
TAACCCCTCCAACTAGAAAA+GGG | - | chr3_1:43108874-43108893 | Msa0358310:intron | 40.0% | |
!!! | TATCCCCTTTTCTAGTTGGA+GGG | + | chr3_1:43108881-43108900 | None:intergenic | 40.0% |
!!! | ATATCCCCTTTTCTAGTTGG+AGG | + | chr3_1:43108882-43108901 | None:intergenic | 40.0% |
!! | GTCATATCCCCTTTTCTAGT+TGG | + | chr3_1:43108885-43108904 | None:intergenic | 40.0% |
! | CATGTACATGTTAGGTTGTG+AGG | + | chr3_1:43109155-43109174 | None:intergenic | 40.0% |
AGAGGTAACTAATAGGTCCT+CGG | + | chr3_1:43109310-43109329 | None:intergenic | 40.0% | |
GTGGTAACAAACCATTCTAC+TGG | - | chr3_1:43109583-43109602 | Msa0358310:intron | 40.0% | |
!! | GACTGCAATCGATAGTTTTG+AGG | - | chr3_1:43109689-43109708 | Msa0358310:intron | 40.0% |
! | GCATTGAAGCTCAGATTTTC+TGG | + | chr3_1:43109810-43109829 | None:intergenic | 40.0% |
TGATTGAACCTACCTTCAAG+TGG | - | chr3_1:43110513-43110532 | Msa0358310:intron | 40.0% | |
! | GGAGAAAGTACATCATCCAA+GGG | + | chr3_1:43110783-43110802 | None:intergenic | 40.0% |
! | TGGAGAAAGTACATCATCCA+AGG | + | chr3_1:43110784-43110803 | None:intergenic | 40.0% |
! | TGAGCTTCCCAATGTTTCTA+AGG | - | chr3_1:43111052-43111071 | Msa0358310:intron | 40.0% |
AGTTGCATACACGAGAAACA+CGG | - | chr3_1:43111123-43111142 | Msa0358310:intron | 40.0% | |
GTATTGTGTCTGACTGCATG+TGG | - | chr3_1:43107280-43107299 | Msa0358310:CDS | 45.0% | |
AGTATTCAGCAGGGTCTGTT+TGG | + | chr3_1:43107697-43107716 | None:intergenic | 45.0% | |
!! | CATTCAAGTACTGGGTGTTG+AGG | + | chr3_1:43107959-43107978 | None:intergenic | 45.0% |
TCCTACTGATCTTGTCAGTG+TGG | - | chr3_1:43108091-43108110 | Msa0358310:intron | 45.0% | |
CCTACTGATCTTGTCAGTGT+GGG | - | chr3_1:43108092-43108111 | Msa0358310:intron | 45.0% | |
! | AGGCTGATAGAGGCATATCT+TGG | - | chr3_1:43108160-43108179 | Msa0358310:intron | 45.0% |
! | TGATAGAGGCATATCTTGGC+AGG | - | chr3_1:43108164-43108183 | Msa0358310:intron | 45.0% |
TATCTTGGCAGGACCGTTAT+TGG | - | chr3_1:43108175-43108194 | Msa0358310:intron | 45.0% | |
ATCTTGGCAGGACCGTTATT+GGG | - | chr3_1:43108176-43108195 | Msa0358310:intron | 45.0% | |
!! | TTGTCGACTAGTCTGAGACT+AGG | + | chr3_1:43108446-43108465 | None:intergenic | 45.0% |
! | TAGTCTCAGACTAGTCGACA+AGG | - | chr3_1:43108445-43108464 | Msa0358310:intron | 45.0% |
! | AGTCTCAGACTAGTCGACAA+GGG | - | chr3_1:43108446-43108465 | Msa0358310:intron | 45.0% |
TGCACACCACTTGTTTGTCA+TGG | + | chr3_1:43108546-43108565 | None:intergenic | 45.0% | |
CTCACGCAATTCATATGGTC+GGG | + | chr3_1:43108729-43108748 | None:intergenic | 45.0% | |
! | CTTGAGCTTCCCTTCTGTTT+TGG | + | chr3_1:43108853-43108872 | None:intergenic | 45.0% |
CTAACCCCTCCAACTAGAAA+AGG | - | chr3_1:43108873-43108892 | Msa0358310:intron | 45.0% | |
AACCCCTCCAACTAGAAAAG+GGG | - | chr3_1:43108875-43108894 | Msa0358310:intron | 45.0% | |
!!! | ATCCCCTTTTCTAGTTGGAG+GGG | + | chr3_1:43108880-43108899 | None:intergenic | 45.0% |
! | TACATGTATTTGCTGCCGAC+AGG | - | chr3_1:43109169-43109188 | Msa0358310:intron | 45.0% |
!! | TTATCCATAGACTGGCCTGT+CGG | + | chr3_1:43109187-43109206 | None:intergenic | 45.0% |
TACCTCTTAGTCTCGTAGTG+AGG | - | chr3_1:43109323-43109342 | Msa0358310:intron | 45.0% | |
!! | TTGCTCTATTTGTTGGTGGC+AGG | - | chr3_1:43109365-43109384 | Msa0358310:intron | 45.0% |
!! | ACATGACACTGCGTCGATTA+CGG | - | chr3_1:43109448-43109467 | Msa0358310:intron | 45.0% |
TGGAAATAGCTAACGTCTCC+AGG | + | chr3_1:43109557-43109576 | None:intergenic | 45.0% | |
!! | GATTTTCTGGGCTAGGCTTT+GGG | + | chr3_1:43109797-43109816 | None:intergenic | 45.0% |
!! | AGATTTTCTGGGCTAGGCTT+TGG | + | chr3_1:43109798-43109817 | None:intergenic | 45.0% |
! | AAGCTCAGATTTTCTGGGCT+AGG | + | chr3_1:43109804-43109823 | None:intergenic | 45.0% |
TCCTATCTTCAAGTCTACCC+TGG | - | chr3_1:43109958-43109977 | Msa0358310:intron | 45.0% | |
ACCAGGGTAGACTTGAAGAT+AGG | + | chr3_1:43109962-43109981 | None:intergenic | 45.0% | |
! | CTCCTGCTTCTTTTGTGCTA+TGG | - | chr3_1:43110429-43110448 | Msa0358310:intron | 45.0% |
CTCCATAGCACAAAAGAAGC+AGG | + | chr3_1:43110434-43110453 | None:intergenic | 45.0% | |
ATGAGAAGCCTGGCGATAAA+TGG | - | chr3_1:43111205-43111224 | Msa0358310:intron | 45.0% | |
TGAGAAGCCTGGCGATAAAT+GGG | - | chr3_1:43111206-43111225 | Msa0358310:intron | 45.0% | |
TAAATGGGACTTGCCAAGAG+TGG | - | chr3_1:43111221-43111240 | Msa0358310:intron | 45.0% | |
TGACTTATGGCGCATCTTTC+TGG | - | chr3_1:43111287-43111306 | Msa0358310:intron | 45.0% | |
GACTTATGGCGCATCTTTCT+GGG | - | chr3_1:43111288-43111307 | Msa0358310:intron | 45.0% | |
CTTTCTGGGTCCAATTGTTC+CGG | - | chr3_1:43111302-43111321 | Msa0358310:intron | 45.0% | |
!!! | CACTGTTTTGCTTCTGAGAC+CGG | + | chr3_1:43111324-43111343 | None:intergenic | 45.0% |
GCAAAACAGTGTTCTCCAAC+AGG | - | chr3_1:43111333-43111352 | Msa0358310:intron | 45.0% | |
GAAAACCAGGGTAATCCTGT+TGG | + | chr3_1:43111351-43111370 | None:intergenic | 45.0% | |
TTGGCGTGTGTTGAAAACCA+GGG | + | chr3_1:43111363-43111382 | None:intergenic | 45.0% | |
ATTGGCGTGTGTTGAAAACC+AGG | + | chr3_1:43111364-43111383 | None:intergenic | 45.0% | |
!! | TATGATTATTTAATATTTAT+TGG | - | chr3_1:43108341-43108360 | Msa0358310:intron | 5.0% |
AAGTCAAGGGTAAGGGCCAA+GGG | + | chr3_1:43107334-43107353 | None:intergenic | 50.0% | |
AAAGTCAAGGGTAAGGGCCA+AGG | + | chr3_1:43107335-43107354 | None:intergenic | 50.0% | |
!! | GAATGTCGATTCTTCTGGGC+TGG | - | chr3_1:43107974-43107993 | Msa0358310:intron | 50.0% |
CCCACACTGACAAGATCAGT+AGG | + | chr3_1:43108095-43108114 | None:intergenic | 50.0% | |
! | TTGTCAGTGTGGGCTGAGAA+TGG | - | chr3_1:43108102-43108121 | Msa0358310:intron | 50.0% |
!! | GACTAGTCTGAGACTAGGAG+AGG | + | chr3_1:43108441-43108460 | None:intergenic | 50.0% |
! | GTCTCAGACTAGTCGACAAG+GGG | - | chr3_1:43108447-43108466 | Msa0358310:intron | 50.0% |
AGCCTGTAGGACTTACCTTC+TGG | - | chr3_1:43108804-43108823 | Msa0358310:intron | 50.0% | |
CACCAGAAGGTAAGTCCTAC+AGG | + | chr3_1:43108809-43108828 | None:intergenic | 50.0% | |
AGCCTCACTACGAGACTAAG+AGG | + | chr3_1:43109328-43109347 | None:intergenic | 50.0% | |
GTGAGCAGGAATGTTGTGTG+TGG | + | chr3_1:43109393-43109412 | None:intergenic | 50.0% | |
GGAAGCAAACATGAGTGAGC+AGG | + | chr3_1:43109407-43109426 | None:intergenic | 50.0% | |
!!! | GCGTCGATTACGGCATTTTC+TGG | - | chr3_1:43109458-43109477 | Msa0358310:intron | 50.0% |
!!! | GCAGCCCACCGAATTTTTTC+TGG | + | chr3_1:43109492-43109511 | None:intergenic | 50.0% |
TGCAGGATTGATGAGAAGCC+TGG | - | chr3_1:43111195-43111214 | Msa0358310:intron | 50.0% | |
! | AGAGCATCAACAGCCACTCT+TGG | + | chr3_1:43111237-43111256 | None:intergenic | 50.0% |
AAGAGTGGCTGTTGATGCTC+TGG | - | chr3_1:43111236-43111255 | Msa0358310:intron | 50.0% | |
AGAGTGGCTGTTGATGCTCT+GGG | - | chr3_1:43111237-43111256 | Msa0358310:intron | 50.0% | |
!! | GCTTCTGAGACCGGAACAAT+TGG | + | chr3_1:43111315-43111334 | None:intergenic | 50.0% |
GTTCTCCAACAGGATTACCC+TGG | - | chr3_1:43111343-43111362 | Msa0358310:intron | 50.0% | |
AGTCAAGGGTAAGGGCCAAG+GGG | + | chr3_1:43107333-43107352 | None:intergenic | 55.0% | |
GCAGGACCGTTATTGGGTCA+AGG | - | chr3_1:43108182-43108201 | Msa0358310:intron | 55.0% | |
GAGCTGGGCATAGCCAGTAA+GGG | + | chr3_1:43108410-43108429 | None:intergenic | 55.0% | |
TGAGCTGGGCATAGCCAGTA+AGG | + | chr3_1:43108411-43108430 | None:intergenic | 55.0% | |
GGAGAGGTAACAGCTGAGCT+GGG | + | chr3_1:43108425-43108444 | None:intergenic | 55.0% | |
AGGAGAGGTAACAGCTGAGC+TGG | + | chr3_1:43108426-43108445 | None:intergenic | 55.0% | |
TTCCCAGTCAGGAAGCCTGT+AGG | - | chr3_1:43108791-43108810 | Msa0358310:intron | 55.0% | |
GTCCTACAGGCTTCCTGACT+GGG | + | chr3_1:43108796-43108815 | None:intergenic | 55.0% | |
AGTCCTACAGGCTTCCTGAC+TGG | + | chr3_1:43108797-43108816 | None:intergenic | 55.0% | |
GGCAAGTCCCATTTATCGCC+AGG | + | chr3_1:43111216-43111235 | None:intergenic | 55.0% | |
! | TGCTCTGGGTGCTGCAATGC+TGG | - | chr3_1:43111251-43111270 | Msa0358310:intron | 60.0% |
GCTGCCGACAGGCCAGTCTA+TGG | - | chr3_1:43109180-43109199 | Msa0358310:intron | 65.0% | |
!! | GGTGGGCTGCTGAAGCTGCA+TGG | - | chr3_1:43109502-43109521 | Msa0358310:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 43107121 | 43111392 | 43107121 | ID=Msa0358310;Name=Msa0358310 |
chr3_1 | mRNA | 43107121 | 43111392 | 43107121 | ID=Msa0358310-mRNA-1;Parent=Msa0358310;Name=Msa0358310-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.66|1|1|6|0|213 |
chr3_1 | exon | 43111387 | 43111392 | 43111387 | ID=Msa0358310-mRNA-1:exon:7619;Parent=Msa0358310-mRNA-1 |
chr3_1 | exon | 43110310 | 43110351 | 43110310 | ID=Msa0358310-mRNA-1:exon:7618;Parent=Msa0358310-mRNA-1 |
chr3_1 | exon | 43109212 | 43109322 | 43109212 | ID=Msa0358310-mRNA-1:exon:7617;Parent=Msa0358310-mRNA-1 |
chr3_1 | exon | 43108935 | 43109126 | 43108935 | ID=Msa0358310-mRNA-1:exon:7616;Parent=Msa0358310-mRNA-1 |
chr3_1 | exon | 43107440 | 43107537 | 43107440 | ID=Msa0358310-mRNA-1:exon:7615;Parent=Msa0358310-mRNA-1 |
chr3_1 | exon | 43107121 | 43107313 | 43107121 | ID=Msa0358310-mRNA-1:exon:7614;Parent=Msa0358310-mRNA-1 |
chr3_1 | CDS | 43111387 | 43111392 | 43111387 | ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1 |
chr3_1 | CDS | 43110310 | 43110351 | 43110310 | ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1 |
chr3_1 | CDS | 43109212 | 43109322 | 43109212 | ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1 |
chr3_1 | CDS | 43108935 | 43109126 | 43108935 | ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1 |
chr3_1 | CDS | 43107440 | 43107537 | 43107440 | ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1 |
chr3_1 | CDS | 43107121 | 43107313 | 43107121 | ID=Msa0358310-mRNA-1:cds;Parent=Msa0358310-mRNA-1 |
Gene Sequence |
Protein sequence |