AlfalfaGEDB | Msa0563020

M. sativa cultivar zhongmu-4 / Msa0563020

KEGG: K14491
GO: GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000280 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563020	XP_013446511.1	87.386	547	49	5	1	536	1	538	0.0	965

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563020	sp\|Q5N6V8\|ORR26_ORYSJ	70.866	254	64	3	24	267	5	258	2.42e-120	369

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563020	A0A072TUL7	87.386	547	49	5	1	536	1	538	0.0	965

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TFs/TRs:

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Gene ID	Type	Classification
Msa0563020	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0563020	Msa0617270	0.845680	3.492314e-59	-8.615850e-47
Msa0563020	Msa0656260	0.857062	2.107769e-62	-8.615850e-47
Msa0563020	Msa0700060	0.863275	2.797267e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563020	MtrunA17_Chr8g0376881	87.386	547	49	5	1	536	1	538	0.0	965
Msa0563020	MtrunA17_Chr3g0123131	61.606	573	160	11	12	536	1	561	0.0	640
Msa0563020	MtrunA17_Chr1g0161431	56.134	269	105	4	25	280	11	279	6.81e-91	291
Msa0563020	MtrunA17_Chr4g0067981	58.915	258	94	4	23	268	29	286	6.61e-89	287
Msa0563020	MtrunA17_Chr2g0294911	55.731	253	100	2	23	266	27	276	5.83e-85	275
Msa0563020	MtrunA17_Chr3g0137101	54.198	262	102	3	23	268	6	265	8.66e-84	273
Msa0563020	MtrunA17_Chr1g0149841	53.906	256	104	3	23	266	3	256	6.13e-78	253
Msa0563020	MtrunA17_Chr4g0074411	50.988	253	105	3	23	262	16	262	1.55e-74	247
Msa0563020	MtrunA17_Chr2g0304841	44.127	315	130	4	22	290	15	329	1.78e-72	244
Msa0563020	MtrunA17_Chr4g0074401	51.969	254	100	6	25	262	17	264	1.06e-71	239

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563020	AT1G67710.1	47.791	498	200	16	26	499	8	469	2.78e-120	364
Msa0563020	AT1G67710.2	43.636	440	188	16	84	499	1	404	7.37e-85	270
Msa0563020	AT3G16857.1	51.485	303	114	7	22	294	30	329	1.28e-82	271
Msa0563020	AT3G16857.2	51.485	303	114	7	22	294	30	329	3.24e-82	270
Msa0563020	AT2G01760.1	52.091	263	109	4	20	265	2	264	1.14e-79	254
Msa0563020	AT2G25180.1	53.571	252	109	2	22	266	10	260	1.79e-79	261
Msa0563020	AT2G01760.2	47.079	291	109	5	20	265	2	292	2.74e-73	239
Msa0563020	AT4G31920.1	50.965	259	105	5	22	272	10	254	5.85e-72	239
Msa0563020	AT1G67710.3	40.476	420	190	16	104	499	12	395	2.06e-68	227
Msa0563020	AT5G58080.1	49.402	251	121	3	23	268	12	261	5.85e-64	220

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Find 83 sgRNAs with CRISPR-Local

Find 503 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCAAGATTTAATCT+TGG	0.410977	4_1:+63335142	Msa0563020:CDS
AAAATTCAAATGGATACTAC+AGG	0.527020	4_1:+63334704	Msa0563020:CDS
AAAGATAAGAAAGAGTTCAG+AGG	0.625719	4_1:+63334769	Msa0563020:CDS
AAAGCATCAAGGTGTGGAGA+AGG	0.568756	4_1:-63329463	None:intergenic
AAAGCGAGTAGTTTGGTCTG+TGG	0.648942	4_1:+63330772	Msa0563020:intron
AAATGAACTTAATGAAGAAA+AGG	0.469526	4_1:+63330692	Msa0563020:CDS
AAATGTTGCTAGTCACTTGC+AGG	0.372643	4_1:+63331077	Msa0563020:CDS
AAGAGAATTTGAAAGTCTCG+AGG	0.633493	4_1:+63330603	Msa0563020:CDS
AAGTTCGATCTACAAGTTCT+TGG	0.348954	4_1:-63330741	None:intergenic
AAGTTTAAGTCCTCTTCCAA+AGG	0.602648	4_1:-63335229	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATGAAAGAAAGAAACCT+CGG	-	chr4_1:63329573-63329592	None:intergenic	30.0%
ATTAGAAGCCAACAAAAATG+TGG	-	chr4_1:63329720-63329739	None:intergenic	30.0%
TGAAAGAATTGCGAAACATA+TGG	+	chr4_1:63330548-63330567	Msa0563020:CDS	30.0%
GGAATTCACTTAATGAGAAA+TGG	+	chr4_1:63330625-63330644	Msa0563020:CDS	30.0%
GTAGATTTATTTAGTGTGCT+TGG	-	chr4_1:63330902-63330921	None:intergenic	30.0%
CTCTTACACAAAAGATATGA+TGG	-	chr4_1:63330969-63330988	None:intergenic	30.0%
TCTTTGATAGAACATTATGG+CGG	-	chr4_1:63331347-63331366	None:intergenic	30.0%
TGGTCTTTGATAGAACATTA+TGG	-	chr4_1:63331350-63331369	None:intergenic	30.0%
GTTCTATCAAAGACCATATT+TGG	+	chr4_1:63331354-63331373	Msa0563020:intron	30.0%
TTACACGGTTTAGATATCTT+GGG	-	chr4_1:63331872-63331891	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	63329412	63335384	63329412	ID=Msa0563020;Name=Msa0563020
chr4_1	mRNA	63329412	63335384	63329412	ID=Msa0563020-mRNA-1;Parent=Msa0563020;Name=Msa0563020-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|1\|0.5\|0.71\|7\|0\|536
chr4_1	exon	63329412	63329574	63329412	ID=Msa0563020-mRNA-1:exon:20081;Parent=Msa0563020-mRNA-1
chr4_1	exon	63330096	63330248	63330096	ID=Msa0563020-mRNA-1:exon:20082;Parent=Msa0563020-mRNA-1
chr4_1	exon	63330464	63330667	63330464	ID=Msa0563020-mRNA-1:exon:20083;Parent=Msa0563020-mRNA-1
chr4_1	exon	63330686	63330778	63330686	ID=Msa0563020-mRNA-1:exon:20084;Parent=Msa0563020-mRNA-1
chr4_1	exon	63330783	63330842	63330783	ID=Msa0563020-mRNA-1:exon:20085;Parent=Msa0563020-mRNA-1
chr4_1	exon	63331022	63331098	63331022	ID=Msa0563020-mRNA-1:exon:20086;Parent=Msa0563020-mRNA-1
chr4_1	exon	63334524	63335384	63334524	ID=Msa0563020-mRNA-1:exon:20087;Parent=Msa0563020-mRNA-1
chr4_1	CDS	63329412	63329574	63329412	ID=Msa0563020-mRNA-1:cds;Parent=Msa0563020-mRNA-1
chr4_1	CDS	63330096	63330248	63330096	ID=Msa0563020-mRNA-1:cds;Parent=Msa0563020-mRNA-1
chr4_1	CDS	63330464	63330667	63330464	ID=Msa0563020-mRNA-1:cds;Parent=Msa0563020-mRNA-1
chr4_1	CDS	63330686	63330778	63330686	ID=Msa0563020-mRNA-1:cds;Parent=Msa0563020-mRNA-1
chr4_1	CDS	63330783	63330842	63330783	ID=Msa0563020-mRNA-1:cds;Parent=Msa0563020-mRNA-1
chr4_1	CDS	63331022	63331098	63331022	ID=Msa0563020-mRNA-1:cds;Parent=Msa0563020-mRNA-1
chr4_1	CDS	63334524	63335384	63334524	ID=Msa0563020-mRNA-1:cds;Parent=Msa0563020-mRNA-1

Gene Sequence

>Msa0563020

ATGGTACACAACAGGTCTCTTGTCTATGACAACATGGATAATTCTTGCTTTCCTTCTCCACACCTTGATGCTTTTCCAGCTGGTCTACGAGTTCTCGTTGTTGATGATGATCTAACTTGGCTCAGAATCCTTGAAAAAATGCTAAAAAAATGCTTTTACCGAGTGACCACATGTTGCTTAGCAATAGAGGCTCTTAAGAAGCTCCGCGAAAGTAAAGATGCATATGACATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAACATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATTTGCTTAAGCCTATAAGGATGAAAGAATTGCGAAACATATGGCAACATGTCTTAAGAAAAAGAATACATGAGGCAAGAGAATTTGAAAGTCTCGAGGGAATTCACTTAATGAGAAATGGATCAGATCACACTGATGATGGAAAAGAAATGAACTTAATGAAGAAAAGGAAAAATTTCGATAGTAAACATGATGACCAAGAACTTGTAGATCGAACTTTCATAAAGAAAGCGATTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCCGTGAATCAACTTGGATTCGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCGTGGCTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACCGGCTATACTTGAGTAGGTTGCAAAAGAAAAATGATCAGAAATTGTCCTCAGGTAGAATAAAGCATTCAGATTTACCTTCAAAAGATCCAGGATGTTTAAGCTTTCTCAACTCTTTCAACAAGCAACAAAACGAAGGTGCAATCGATAGTTTTGGATATTCAGATGGGACATTAAAAATTCAAATGGATACTACAGGTCATGAAAAAAGAAGAGCTTCAACTAGTGAAATTTCTGATCCAAAGATAAGAAAGAGTTCAGAGGTAGGTCTTAACCAATCTCTGGAATCAGAAGTAAACCATACAGCATTTGACTCCACCATACCAACACAGTACTCTTGGAATGAAGTTTCTAAAACGCCACTCGAAGAAGAACAGAACACACTTGTACAATTAAAGGATAGCTTCAGCCATTTGCCATTAAATGTTACACAGCAACACTTCCAAATTGACCAATCACTTTCATTTAATTCCAATCCCTCCGATTACAAGAATGATTACATTAGTCCTGTGAATTCATCGGTGTCTTCAGTTGATACCTTTCCTAGTCAGTCCAAAAGCCTCATCTCAAATGATCAATCTCCTGATATCATTTTAACTTCAAATTTGAGTTCAAAAACACCAAGATTTAATCTTGGTTGCATTTATGATATGGAAATCTACCAAAGAAACTTACTTTTGGGTATTGAGTCAGCTTCCACACCTTTGGAAGAGGACTTAAACTTCCTTTTGTTACAAGGTGAATATGATATGAATATGAACTTTGACATGCAGAATATAGAGATGTCAGAGTATTATGATCCAAGGTTTATTGCTGAAGTTCCTACCAATTTGTATGCTTCAGCAGATTATTCTTAG

Protein sequence

>Msa0563020

MVHNRSLVYDNMDNSCFPSPHLDAFPAGLRVLVVDDDLTWLRILEKMLKKCFYRVTTCCLAIEALKKLRESKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAREFESLEGIHLMRNGSDHTDDGKEMNLMKKRKNFDSKHDDQELVDRTFIKKAIWSVDLHQKFVKAVNQLGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKKNDQKLSSGRIKHSDLPSKDPGCLSFLNSFNKQQNEGAIDSFGYSDGTLKIQMDTTGHEKRRASTSEISDPKIRKSSEVGLNQSLESEVNHTAFDSTIPTQYSWNEVSKTPLEEEQNTLVQLKDSFSHLPLNVTQQHFQIDQSLSFNSNPSDYKNDYISPVNSSVSSVDTFPSQSKSLISNDQSPDIILTSNLSSKTPRFNLGCIYDMEIYQRNLLLGIESASTPLEEDLNFLLLQGEYDMNMNFDMQNIEMSEYYDPRFIAEVPTNLYASADYS*