Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0617270 | XP_013446511.1 | 89.484 | 523 | 43 | 3 | 1 | 519 | 1 | 515 | 0.0 | 951 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0617270 | sp|Q9FXD6|ARR11_ARATH | 48.805 | 502 | 197 | 16 | 26 | 507 | 8 | 469 | 4.32e-123 | 373 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0617270 | TF | GARP-ARR-B |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0617270 | Msa0656260 | 0.835960 | 1.237609e-56 | -8.615850e-47 |
Msa0617270 | Msa0700060 | 0.855060 | 8.128858e-62 | -8.615850e-47 |
Msa0563020 | Msa0617270 | 0.845680 | 3.492314e-59 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0617270 | MtrunA17_Chr8g0376881 | 89.484 | 523 | 43 | 3 | 1 | 519 | 1 | 515 | 0.0 | 951 |
Msa0617270 | MtrunA17_Chr3g0123131 | 62.113 | 549 | 156 | 10 | 12 | 519 | 1 | 538 | 0.0 | 625 |
Msa0617270 | MtrunA17_Chr1g0161431 | 60.081 | 248 | 94 | 2 | 25 | 267 | 11 | 258 | 5.34e-95 | 301 |
Msa0617270 | MtrunA17_Chr4g0067981 | 59.302 | 258 | 101 | 1 | 23 | 276 | 29 | 286 | 8.95e-92 | 294 |
Msa0617270 | MtrunA17_Chr2g0294911 | 57.143 | 252 | 106 | 1 | 23 | 274 | 27 | 276 | 8.67e-88 | 282 |
Msa0617270 | MtrunA17_Chr3g0137101 | 55.133 | 263 | 106 | 3 | 23 | 276 | 6 | 265 | 1.76e-84 | 274 |
Msa0617270 | MtrunA17_Chr1g0149841 | 55.682 | 264 | 95 | 4 | 23 | 274 | 3 | 256 | 4.85e-82 | 263 |
Msa0617270 | MtrunA17_Chr4g0074411 | 50.958 | 261 | 101 | 4 | 23 | 270 | 16 | 262 | 6.65e-76 | 250 |
Msa0617270 | MtrunA17_Chr2g0304841 | 46.688 | 317 | 127 | 6 | 22 | 298 | 15 | 329 | 5.50e-75 | 250 |
Msa0617270 | MtrunA17_Chr4g0074401 | 51.613 | 248 | 118 | 1 | 25 | 270 | 17 | 264 | 3.08e-74 | 246 |
Msa0617270 | MtrunA17_Chr1g0149851 | 52.075 | 265 | 102 | 4 | 23 | 266 | 3 | 263 | 8.02e-72 | 238 |
Msa0617270 | MtrunA17_Chr7g0275891 | 46.316 | 285 | 124 | 5 | 23 | 285 | 3 | 280 | 1.36e-69 | 226 |
Msa0617270 | MtrunA17_Chr7g0275401 | 49.597 | 248 | 116 | 3 | 23 | 264 | 3 | 247 | 2.19e-65 | 214 |
Msa0617270 | MtrunA17_Chr3g0134481 | 46.218 | 238 | 68 | 2 | 23 | 260 | 6 | 183 | 1.79e-58 | 192 |
Msa0617270 | MtrunA17_Chr4g0009851 | 40.698 | 258 | 122 | 6 | 24 | 281 | 10 | 236 | 7.16e-57 | 192 |
Msa0617270 | MtrunA17_Chr4g0009901 | 40.996 | 261 | 126 | 5 | 24 | 284 | 9 | 241 | 1.57e-55 | 187 |
Msa0617270 | MtrunA17_Chr4g0074421 | 51.042 | 192 | 85 | 4 | 75 | 263 | 2 | 187 | 4.81e-55 | 183 |
Msa0617270 | MtrunA17_Chr1g0149831 | 52.217 | 203 | 72 | 5 | 84 | 274 | 1 | 190 | 1.12e-52 | 178 |
Msa0617270 | MtrunA17_Chr3g0134461 | 45.992 | 237 | 77 | 3 | 23 | 258 | 6 | 192 | 4.15e-49 | 167 |
Msa0617270 | MtrunA17_Chr6g0471041 | 37.344 | 241 | 123 | 6 | 25 | 264 | 14 | 227 | 4.84e-44 | 160 |
Msa0617270 | MtrunA17_Chr4g0009981 | 37.850 | 214 | 103 | 3 | 70 | 283 | 2 | 185 | 3.93e-42 | 151 |
Msa0617270 | MtrunA17_Chr8g0391911 | 31.343 | 268 | 146 | 6 | 23 | 271 | 7 | 255 | 9.10e-33 | 125 |
Msa0617270 | MtrunA17_Chr8g0383961 | 40.667 | 150 | 88 | 1 | 25 | 173 | 14 | 163 | 5.81e-29 | 115 |
Msa0617270 | MtrunA17_Chr4g0011071 | 33.540 | 161 | 82 | 2 | 72 | 232 | 36 | 171 | 1.73e-27 | 108 |
Msa0617270 | MtrunA17_Chr6g0473731 | 33.862 | 189 | 100 | 3 | 105 | 290 | 10 | 176 | 7.54e-26 | 110 |
Msa0617270 | MtrunA17_Chr8g0350761 | 28.627 | 255 | 160 | 6 | 27 | 261 | 19 | 271 | 3.56e-24 | 105 |
Msa0617270 | MtrunA17_Chr6g0456631 | 34.266 | 143 | 86 | 4 | 25 | 160 | 9 | 150 | 4.97e-23 | 95.9 |
Msa0617270 | MtrunA17_Chr3g0127941 | 38.281 | 128 | 74 | 2 | 29 | 152 | 56 | 182 | 4.74e-21 | 97.1 |
Msa0617270 | MtrunA17_Chr7g0276361 | 36.719 | 128 | 72 | 2 | 26 | 147 | 11 | 135 | 6.50e-20 | 93.2 |
Msa0617270 | MtrunA17_Chr4g0009991 | 36.620 | 142 | 64 | 3 | 117 | 258 | 1 | 116 | 6.71e-20 | 85.5 |
Msa0617270 | MtrunA17_Chr4g0030271 | 36.585 | 123 | 73 | 2 | 29 | 147 | 89 | 210 | 1.12e-18 | 89.7 |
Msa0617270 | MtrunA17_Chr8g0345901 | 36.585 | 123 | 73 | 2 | 31 | 149 | 38 | 159 | 4.71e-18 | 87.4 |
Msa0617270 | MtrunA17_Chr3g0091641 | 34.146 | 123 | 78 | 1 | 29 | 148 | 24 | 146 | 5.14e-18 | 87.0 |
Msa0617270 | MtrunA17_Chr4g0031961 | 58.333 | 72 | 29 | 1 | 207 | 277 | 129 | 200 | 6.99e-18 | 84.7 |
Msa0617270 | MtrunA17_Chr4g0061021 | 34.959 | 123 | 77 | 1 | 29 | 148 | 33 | 155 | 1.99e-17 | 85.5 |
Msa0617270 | MtrunA17_Chr1g0181811 | 36.066 | 122 | 75 | 1 | 29 | 147 | 85 | 206 | 3.27e-17 | 85.1 |
Msa0617270 | MtrunA17_Chr7g0255711 | 59.677 | 62 | 25 | 0 | 207 | 268 | 89 | 150 | 8.91e-17 | 81.3 |
Msa0617270 | MtrunA17_Chr5g0423031 | 40.244 | 82 | 48 | 1 | 24 | 105 | 9 | 89 | 4.21e-16 | 76.6 |
Msa0617270 | MtrunA17_Chr4g0054981 | 46.465 | 99 | 49 | 2 | 182 | 279 | 286 | 381 | 7.44e-15 | 77.4 |
Msa0617270 | MtrunA17_Chr4g0054981 | 34.677 | 124 | 77 | 2 | 25 | 147 | 14 | 134 | 1.87e-12 | 69.7 |
Msa0617270 | MtrunA17_Chr5g0400241 | 62.500 | 56 | 21 | 0 | 208 | 263 | 310 | 365 | 1.54e-14 | 76.3 |
Msa0617270 | MtrunA17_Chr5g0400241 | 36.800 | 125 | 73 | 3 | 25 | 147 | 14 | 134 | 3.25e-13 | 72.0 |
Msa0617270 | MtrunA17_Chr4g0010001 | 40.244 | 82 | 48 | 1 | 24 | 105 | 9 | 89 | 3.53e-14 | 68.2 |
Msa0617270 | MtrunA17_Chr2g0324891 | 46.377 | 69 | 37 | 0 | 208 | 276 | 160 | 228 | 2.45e-13 | 72.0 |
Msa0617270 | MtrunA17_Chr4g0040481 | 46.377 | 69 | 37 | 0 | 208 | 276 | 157 | 225 | 2.98e-13 | 71.6 |
Msa0617270 | MtrunA17_Chr8g0352871 | 29.167 | 144 | 82 | 3 | 31 | 154 | 11 | 154 | 1.19e-12 | 66.6 |
Msa0617270 | MtrunA17_Chr6g0469321 | 75.000 | 44 | 11 | 0 | 224 | 267 | 69 | 112 | 1.87e-12 | 65.9 |
Msa0617270 | MtrunA17_Chr4g0059571 | 28.873 | 142 | 86 | 4 | 26 | 152 | 20 | 161 | 3.54e-12 | 65.9 |
Msa0617270 | MtrunA17_Chr7g0256551 | 25.294 | 170 | 104 | 3 | 24 | 170 | 4 | 173 | 4.82e-12 | 65.9 |
Msa0617270 | MtrunA17_Chr6g0461641 | 53.448 | 58 | 26 | 1 | 209 | 265 | 42 | 99 | 1.43e-11 | 66.2 |
Msa0617270 | MtrunA17_Chr1g0198601 | 46.479 | 71 | 37 | 1 | 208 | 277 | 210 | 280 | 1.43e-11 | 66.2 |
Msa0617270 | MtrunA17_Chr2g0321461 | 46.667 | 75 | 33 | 2 | 209 | 282 | 45 | 113 | 1.68e-11 | 66.2 |
Msa0617270 | MtrunA17_Chr5g0417521 | 52.727 | 55 | 25 | 1 | 209 | 262 | 15 | 69 | 2.69e-11 | 65.1 |
Msa0617270 | MtrunA17_Chr4g0062921 | 53.333 | 60 | 27 | 1 | 208 | 266 | 234 | 293 | 3.29e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0617270 | AT1G67710.1 | 48.805 | 502 | 197 | 16 | 26 | 507 | 8 | 469 | 4.39e-124 | 373 |
Msa0617270 | AT1G67710.2 | 45.045 | 444 | 184 | 16 | 84 | 507 | 1 | 404 | 8.29e-90 | 283 |
Msa0617270 | AT3G16857.1 | 52.805 | 303 | 118 | 6 | 22 | 302 | 30 | 329 | 5.94e-87 | 281 |
Msa0617270 | AT3G16857.2 | 52.805 | 303 | 118 | 6 | 22 | 302 | 30 | 329 | 1.01e-86 | 281 |
Msa0617270 | AT2G25180.1 | 54.826 | 259 | 103 | 2 | 22 | 274 | 10 | 260 | 1.62e-81 | 265 |
Msa0617270 | AT2G01760.1 | 53.030 | 264 | 113 | 4 | 20 | 273 | 2 | 264 | 1.57e-80 | 256 |
Msa0617270 | AT2G01760.2 | 47.945 | 292 | 113 | 5 | 20 | 273 | 2 | 292 | 3.11e-74 | 241 |
Msa0617270 | AT4G31920.1 | 50.965 | 259 | 113 | 3 | 22 | 280 | 10 | 254 | 6.55e-74 | 244 |
Msa0617270 | AT1G67710.3 | 41.981 | 424 | 186 | 16 | 104 | 507 | 12 | 395 | 4.63e-73 | 239 |
Msa0617270 | AT3G16857.3 | 51.724 | 261 | 101 | 6 | 64 | 302 | 2 | 259 | 3.88e-68 | 231 |
Msa0617270 | AT5G58080.1 | 50.388 | 258 | 116 | 4 | 23 | 276 | 12 | 261 | 2.16e-65 | 224 |
Msa0617270 | AT2G01760.3 | 52.000 | 200 | 85 | 4 | 84 | 273 | 1 | 199 | 1.13e-55 | 189 |
Msa0617270 | AT5G49240.1 | 38.983 | 236 | 141 | 2 | 25 | 258 | 38 | 272 | 1.03e-45 | 162 |
Msa0617270 | AT1G49190.1 | 32.576 | 264 | 149 | 5 | 22 | 268 | 27 | 278 | 1.19e-37 | 143 |
Msa0617270 | AT5G07210.2 | 32.234 | 273 | 149 | 7 | 29 | 270 | 16 | 283 | 2.48e-33 | 134 |
Msa0617270 | AT3G62670.1 | 35.443 | 237 | 138 | 5 | 30 | 261 | 42 | 268 | 2.37e-32 | 129 |
Msa0617270 | AT5G07210.1 | 31.317 | 281 | 149 | 9 | 29 | 270 | 16 | 291 | 1.44e-31 | 129 |
Msa0617270 | AT2G27070.1 | 30.241 | 291 | 160 | 6 | 29 | 283 | 16 | 299 | 7.04e-30 | 124 |
Msa0617270 | AT1G49190.2 | 41.406 | 128 | 75 | 0 | 22 | 149 | 27 | 154 | 1.78e-26 | 114 |
Msa0617270 | AT2G46790.3 | 38.211 | 123 | 71 | 2 | 29 | 147 | 37 | 158 | 2.50e-21 | 97.1 |
Msa0617270 | AT2G46790.1 | 38.211 | 123 | 71 | 2 | 29 | 147 | 37 | 158 | 3.15e-21 | 97.1 |
Msa0617270 | AT5G24470.1 | 27.425 | 299 | 169 | 11 | 28 | 299 | 49 | 326 | 4.92e-21 | 97.1 |
Msa0617270 | AT5G60100.7 | 39.855 | 138 | 77 | 3 | 29 | 162 | 64 | 199 | 4.74e-20 | 92.8 |
Msa0617270 | AT5G60100.6 | 39.855 | 138 | 77 | 3 | 29 | 162 | 64 | 199 | 4.74e-20 | 92.8 |
Msa0617270 | AT5G60100.4 | 39.855 | 138 | 77 | 3 | 29 | 162 | 64 | 199 | 4.74e-20 | 92.8 |
Msa0617270 | AT5G60100.2 | 40.310 | 129 | 71 | 3 | 29 | 153 | 64 | 190 | 6.63e-20 | 93.2 |
Msa0617270 | AT5G60100.5 | 39.855 | 138 | 77 | 3 | 29 | 162 | 64 | 199 | 9.03e-20 | 92.8 |
Msa0617270 | AT5G60100.3 | 39.855 | 138 | 77 | 3 | 29 | 162 | 64 | 199 | 9.03e-20 | 92.8 |
Msa0617270 | AT5G60100.1 | 39.855 | 138 | 77 | 3 | 29 | 162 | 64 | 199 | 9.03e-20 | 92.8 |
Msa0617270 | AT1G68210.1 | 24.638 | 276 | 163 | 5 | 29 | 267 | 13 | 280 | 1.06e-19 | 93.2 |
Msa0617270 | AT5G61380.1 | 36.585 | 123 | 75 | 1 | 29 | 148 | 19 | 141 | 1.67e-18 | 89.4 |
Msa0617270 | AT3G46640.2 | 50.633 | 79 | 38 | 1 | 199 | 277 | 135 | 212 | 2.38e-17 | 83.6 |
Msa0617270 | AT3G46640.1 | 50.633 | 79 | 38 | 1 | 199 | 277 | 135 | 212 | 2.38e-17 | 83.6 |
Msa0617270 | AT3G46640.3 | 53.521 | 71 | 33 | 0 | 207 | 277 | 142 | 212 | 3.76e-17 | 83.2 |
Msa0617270 | AT2G40970.1 | 59.677 | 62 | 25 | 0 | 207 | 268 | 103 | 164 | 4.18e-17 | 81.6 |
Msa0617270 | AT5G59570.2 | 60.656 | 61 | 24 | 0 | 208 | 268 | 140 | 200 | 6.14e-17 | 82.0 |
Msa0617270 | AT5G59570.1 | 60.656 | 61 | 24 | 0 | 208 | 268 | 140 | 200 | 6.14e-17 | 82.0 |
Msa0617270 | AT3G10760.1 | 59.677 | 62 | 25 | 0 | 207 | 268 | 103 | 164 | 7.28e-17 | 82.4 |
Msa0617270 | AT5G02810.1 | 38.211 | 123 | 71 | 2 | 29 | 147 | 78 | 199 | 1.25e-16 | 83.6 |
Msa0617270 | AT5G05090.1 | 45.714 | 105 | 54 | 2 | 207 | 311 | 79 | 180 | 1.48e-16 | 80.1 |
Msa0617270 | AT5G44190.2 | 50.000 | 76 | 38 | 0 | 208 | 283 | 146 | 221 | 3.82e-15 | 77.4 |
Msa0617270 | AT5G44190.1 | 50.000 | 76 | 38 | 0 | 208 | 283 | 146 | 221 | 4.28e-15 | 77.4 |
Msa0617270 | AT2G20570.1 | 48.000 | 75 | 39 | 0 | 208 | 282 | 152 | 226 | 2.26e-14 | 75.5 |
Msa0617270 | AT2G20570.2 | 45.783 | 83 | 45 | 0 | 200 | 282 | 160 | 242 | 6.14e-14 | 74.3 |
Msa0617270 | AT3G57040.2 | 28.302 | 159 | 91 | 4 | 31 | 167 | 11 | 168 | 6.07e-13 | 68.9 |
Msa0617270 | AT3G57040.1 | 28.302 | 159 | 91 | 4 | 31 | 167 | 11 | 168 | 6.07e-13 | 68.9 |
Msa0617270 | AT4G18020.3 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.17e-13 | 71.2 |
Msa0617270 | AT4G18020.3 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 2.75e-12 | 69.7 |
Msa0617270 | AT4G18020.2 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.17e-13 | 71.2 |
Msa0617270 | AT4G18020.2 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 2.75e-12 | 69.7 |
Msa0617270 | AT4G18020.1 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.17e-13 | 71.2 |
Msa0617270 | AT4G18020.1 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 2.75e-12 | 69.7 |
Msa0617270 | AT4G18020.6 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.17e-13 | 71.2 |
Msa0617270 | AT4G18020.6 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 2.75e-12 | 69.7 |
Msa0617270 | AT4G18020.9 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.17e-13 | 71.2 |
Msa0617270 | AT4G18020.9 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 2.75e-12 | 69.7 |
Msa0617270 | AT4G18020.8 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.66e-13 | 70.9 |
Msa0617270 | AT4G18020.8 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 1.71e-12 | 70.1 |
Msa0617270 | AT4G18020.11 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.66e-13 | 70.9 |
Msa0617270 | AT4G18020.11 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 1.71e-12 | 70.1 |
Msa0617270 | AT4G18020.4 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.66e-13 | 70.9 |
Msa0617270 | AT4G18020.4 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 1.71e-12 | 70.1 |
Msa0617270 | AT4G18020.5 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.66e-13 | 70.9 |
Msa0617270 | AT4G18020.5 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 1.71e-12 | 70.1 |
Msa0617270 | AT4G18020.10 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.66e-13 | 70.9 |
Msa0617270 | AT4G18020.10 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 1.71e-12 | 70.1 |
Msa0617270 | AT4G18020.7 | 50.769 | 65 | 32 | 0 | 209 | 273 | 296 | 360 | 9.66e-13 | 70.9 |
Msa0617270 | AT4G18020.7 | 34.074 | 135 | 80 | 3 | 25 | 152 | 14 | 146 | 1.71e-12 | 70.1 |
Msa0617270 | AT5G18240.2 | 56.364 | 55 | 23 | 1 | 209 | 262 | 45 | 99 | 7.77e-12 | 67.8 |
Msa0617270 | AT5G18240.3 | 56.364 | 55 | 23 | 1 | 209 | 262 | 45 | 99 | 7.77e-12 | 67.8 |
Msa0617270 | AT5G18240.5 | 56.364 | 55 | 23 | 1 | 209 | 262 | 45 | 99 | 8.12e-12 | 67.4 |
Msa0617270 | AT5G18240.1 | 56.364 | 55 | 23 | 1 | 209 | 262 | 45 | 99 | 8.64e-12 | 67.4 |
Msa0617270 | AT5G18240.4 | 56.364 | 55 | 23 | 1 | 209 | 262 | 45 | 99 | 8.64e-12 | 67.4 |
Msa0617270 | AT3G04030.1 | 54.545 | 55 | 24 | 1 | 209 | 262 | 45 | 99 | 1.08e-11 | 67.0 |
Msa0617270 | AT3G04030.3 | 54.545 | 55 | 24 | 1 | 209 | 262 | 45 | 99 | 1.14e-11 | 67.0 |
Msa0617270 | AT1G19050.1 | 27.333 | 150 | 88 | 4 | 25 | 153 | 11 | 160 | 1.56e-11 | 64.3 |
Msa0617270 | AT3G04030.2 | 51.852 | 54 | 26 | 0 | 209 | 262 | 45 | 98 | 2.08e-11 | 66.2 |
Find 82 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGAACTCTTTCTTATCTT+TGG | 0.198401 | 4_2:-67711800 | None:intergenic |
TGCAATTCTTTCATCCTTAT+AGG | 0.213366 | 4_2:-67710741 | None:intergenic |
TCTTGGTTGCATTTATGATA+TGG | 0.215616 | 4_2:+67712192 | Msa0617270:CDS |
TGTTGCTGTGTAACATTTAA+TGG | 0.220612 | 4_2:-67711977 | None:intergenic |
TTGAAAGTGATTGGTCAATT+TGG | 0.229447 | 4_2:-67712003 | None:intergenic |
ATCATTTGAGATGAGGCTTT+TGG | 0.254966 | 4_2:-67712113 | None:intergenic |
GAACACACTTGTACAATTAA+AGG | 0.258335 | 4_2:+67711937 | Msa0617270:CDS |
ATTATTTGCTTAAGCCTATA+AGG | 0.266042 | 4_2:+67710727 | Msa0617270:CDS |
TACCCAAAAGTAAGTTTCTT+TGG | 0.274466 | 4_2:-67712222 | None:intergenic |
CTACCAAAGAAACTTACTTT+TGG | 0.276715 | 4_2:+67712219 | Msa0617270:CDS |
TGGAATTAATTGAAAGTGAT+TGG | 0.324987 | 4_2:-67712012 | None:intergenic |
TTTGAAGTTAAAATGATATC+AGG | 0.326062 | 4_2:-67712142 | None:intergenic |
AAGTTCGATCTACGAGTTCT+TGG | 0.327718 | 4_2:-67710944 | None:intergenic |
TGAAAGAATTGCAAAATATA+TGG | 0.343306 | 4_2:+67710751 | Msa0617270:CDS |
GAAGGTGCAATCGATAGTTT+TGG | 0.347432 | 4_2:+67711695 | Msa0617270:CDS |
TGAGTCAGCTTCCACACCTT+TGG | 0.366813 | 4_2:+67712246 | Msa0617270:CDS |
AAATGTTGCTAGTCACTTGC+AGG | 0.372643 | 4_2:+67711282 | Msa0617270:CDS |
TAAAGAAAGCTAGAGTAGTT+TGG | 0.378977 | 4_2:+67710970 | Msa0617270:CDS |
AATGTAATCATTCTTGTAAT+CGG | 0.392849 | 4_2:-67712041 | None:intergenic |
GGAATTCACTTAATGAGAAA+TGG | 0.405209 | 4_2:+67710828 | Msa0617270:CDS |
TTACTTCTGATTCCAGAGAT+TGG | 0.407149 | 4_2:-67711835 | None:intergenic |
AAAACACCAAGATTTAATCT+TGG | 0.410977 | 4_2:+67712175 | Msa0617270:CDS |
CACATGTTGCTTAGCAATAG+AGG | 0.420963 | 4_2:+67710307 | Msa0617270:CDS |
CCATACCAACACAGTACTCT+TGG | 0.432925 | 4_2:+67711879 | Msa0617270:CDS |
ATCGAATCCAAGTTGATTCA+CGG | 0.433229 | 4_2:-67711024 | None:intergenic |
ATTCTTGTAATCGGAGGGAT+TGG | 0.437838 | 4_2:-67712032 | None:intergenic |
GGTAGGTCTTAACCAATCTC+TGG | 0.459702 | 4_2:+67711823 | Msa0617270:CDS |
CATATGCACCTTTACTTTCG+CGG | 0.461930 | 4_2:-67710343 | None:intergenic |
CATATTCACCTTGTAACAAA+AGG | 0.468727 | 4_2:-67712285 | None:intergenic |
TTCAAACTTCTTGAACATGT+TGG | 0.469637 | 4_2:+67710407 | Msa0617270:CDS |
ATGCAACCAAGATTAAATCT+TGG | 0.480002 | 4_2:-67712181 | None:intergenic |
GATTTACCTTCAAAAGATCC+AGG | 0.483223 | 4_2:+67711632 | Msa0617270:CDS |
AGTTTGAAACCATCCATGTC+AGG | 0.489995 | 4_2:-67710392 | None:intergenic |
GTTAAAGCCGTGAATCAACT+TGG | 0.490583 | 4_2:+67711017 | Msa0617270:CDS |
TTGAGAAAGCTTAAACATCC+TGG | 0.491396 | 4_2:-67711650 | None:intergenic |
AAATGAACTTAACGAAGAAA+AGG | 0.493420 | 4_2:+67710895 | Msa0617270:CDS |
CAAACATCATGGTACACAAC+AGG | 0.500098 | 4_2:+67709628 | None:intergenic |
TATGCAGTGATGTCTGTTGA+TGG | 0.505268 | 4_2:+67710660 | Msa0617270:intron |
AGCTTCCACACCTTTGGACG+AGG | 0.506847 | 4_2:+67712252 | Msa0617270:CDS |
GGATCAGATCACACGTATGA+TGG | 0.512479 | 4_2:+67710849 | Msa0617270:CDS |
ACGAGAACTCGTAGACCAGC+TGG | 0.523070 | 4_2:-67709711 | None:intergenic |
CATTAGTCCTGTGAATTCAT+CGG | 0.523463 | 4_2:+67712060 | Msa0617270:CDS |
TGAACATGTTGGACTTGAGA+TGG | 0.525184 | 4_2:+67710418 | Msa0617270:CDS |
AAGAGAATTTGAAAGTCTTG+AGG | 0.527186 | 4_2:+67710806 | Msa0617270:CDS |
GAGATTGATCATTTGAGATG+AGG | 0.529752 | 4_2:-67712120 | None:intergenic |
GTGTAACATTTAATGGCAAA+TGG | 0.530650 | 4_2:-67711970 | None:intergenic |
AGAGAATTTGAAAGTCTTGA+GGG | 0.534100 | 4_2:+67710807 | Msa0617270:CDS |
AAGAAGCTCCGCGAAAGTAA+AGG | 0.537534 | 4_2:+67710335 | Msa0617270:CDS |
TAAAAGAACTTACTAATGAC+AGG | 0.538868 | 4_2:-67710446 | None:intergenic |
GTGTTCTGTTCTTCTTCGAG+TGG | 0.552522 | 4_2:-67711920 | None:intergenic |
CGATGTAAACATGCCTGACA+TGG | 0.555999 | 4_2:+67710379 | Msa0617270:CDS |
GCAACCTACTCAAGTATAGC+CGG | 0.557803 | 4_2:-67711562 | None:intergenic |
TAATCATTCTTGTAATCGGA+GGG | 0.562863 | 4_2:-67712037 | None:intergenic |
TGGTGGAGTCAAATGCTGTA+TGG | 0.564365 | 4_2:-67711859 | None:intergenic |
AAAGCATCAAGGTGTGGAGA+AGG | 0.568756 | 4_2:-67709687 | None:intergenic |
CCAAGAGTACTGTGTTGGTA+TGG | 0.569363 | 4_2:-67711879 | None:intergenic |
AATGATCAGAAATTGTCCTC+AGG | 0.572148 | 4_2:+67711593 | Msa0617270:CDS |
TTGTTGATGATGATCTAACT+TGG | 0.573322 | 4_2:+67709733 | Msa0617270:CDS |
TCATTCCAAGAGTACTGTGT+TGG | 0.583367 | 4_2:-67711884 | None:intergenic |
AAAATTCAAATGGATACCAC+AGG | 0.584796 | 4_2:+67711737 | Msa0617270:CDS |
CTGTTGATGGAGAAACAAGC+AGG | 0.593651 | 4_2:+67710673 | Msa0617270:CDS |
GTGATGAAAGGTGTTCAACA+TGG | 0.594525 | 4_2:+67710696 | Msa0617270:CDS |
GTAATCATTCTTGTAATCGG+AGG | 0.596210 | 4_2:-67712038 | None:intergenic |
ATAAGAAAGAGTTCAGAGGT+AGG | 0.597933 | 4_2:+67711806 | Msa0617270:CDS |
AAGTTTAAGTCCTCGTCCAA+AGG | 0.599539 | 4_2:-67712262 | None:intergenic |
AGAGTACTGTGTTGGTATGG+TGG | 0.600173 | 4_2:-67711876 | None:intergenic |
GACCAGCTGGAAAAGCATCA+AGG | 0.602271 | 4_2:-67709698 | None:intergenic |
AGCTAGAGTAGTTTGGTCTG+TGG | 0.615227 | 4_2:+67710977 | Msa0617270:CDS |
GAAGACACCGATGAATTCAC+AGG | 0.619719 | 4_2:-67712067 | None:intergenic |
AATACCGGCTATACTTGAGT+AGG | 0.620491 | 4_2:+67711558 | Msa0617270:CDS |
CTCTATTGCTAAGCAACATG+TGG | 0.620636 | 4_2:-67710306 | None:intergenic |
TAAGTCCTCGTCCAAAGGTG+TGG | 0.621176 | 4_2:-67712257 | None:intergenic |
AAAGATAAGAAAGAGTTCAG+AGG | 0.625719 | 4_2:+67711802 | Msa0617270:CDS |
GAAACAAGCAGGGTGATGAA+AGG | 0.627020 | 4_2:+67710684 | Msa0617270:CDS |
GCTGGAAAAGCATCAAGGTG+TGG | 0.628160 | 4_2:-67709693 | None:intergenic |
GTCTCTTGTCTATGACAACA+TGG | 0.628850 | 4_2:+67709650 | Msa0617270:CDS |
GATGGTAACATGTTTGCTGT+AGG | 0.635219 | 4_2:+67710867 | Msa0617270:CDS |
TGAATGCTTTATTCTACCTG+AGG | 0.641744 | 4_2:-67711609 | None:intergenic |
TAGATTTGATGAATGTTCCG+TGG | 0.652142 | 4_2:+67711248 | Msa0617270:CDS |
TTCAACAAGCAACAAAACGA+AGG | 0.664591 | 4_2:+67711677 | Msa0617270:CDS |
GTAAACATGCCTGACATGGA+TGG | 0.678855 | 4_2:+67710383 | Msa0617270:CDS |
TGTTGATGGAGAAACAAGCA+GGG | 0.723682 | 4_2:+67710674 | Msa0617270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGATAAAAATAATTTCTTTT+TGG | + | chr4_2:67711201-67711220 | Msa0617270:intron | 10.0% |
!!! | ATTTTTCCTTTGAAAAAAAA+GGG | - | chr4_2:67709974-67709993 | None:intergenic | 15.0% |
!!! | TCTTTTATCTTAATTAACAA+AGG | + | chr4_2:67710072-67710091 | Msa0617270:intron | 15.0% |
!! | TAATAGTTAATTTATACTCA+TGG | + | chr4_2:67710171-67710190 | Msa0617270:intron | 15.0% |
!! | AATAGTTAATTTATACTCAT+GGG | + | chr4_2:67710172-67710191 | Msa0617270:intron | 15.0% |
!! | TTTCTTAAATTAGCAAAATT+TGG | + | chr4_2:67710230-67710249 | Msa0617270:intron | 15.0% |
!!! | AAGAGCAAAATTTTATTATT+AGG | - | chr4_2:67711534-67711553 | None:intergenic | 15.0% |
!!! | ATTTTTTGAGCATTTTTTCA+AGG | - | chr4_2:67709767-67709786 | None:intergenic | 20.0% |
!!! | CATTTTTCCTTTGAAAAAAA+AGG | - | chr4_2:67709975-67709994 | None:intergenic | 20.0% |
!!! | ACAGGTTTTGATTATAAATT+AGG | - | chr4_2:67710201-67710220 | None:intergenic | 20.0% |
!! | TTTAAGAAAAAATAGCTTAC+AGG | - | chr4_2:67710219-67710238 | None:intergenic | 20.0% |
!! | TGAAAGAATTGCAAAATATA+TGG | + | chr4_2:67710751-67710770 | Msa0617270:CDS | 20.0% |
!!! | ATCAAATCTAGAATTTTCTT+GGG | - | chr4_2:67711238-67711257 | None:intergenic | 20.0% |
!!! | TAAACTTTTAACTTTAGTAG+AGG | - | chr4_2:67711329-67711348 | None:intergenic | 20.0% |
!! | AATGTAATCATTCTTGTAAT+CGG | - | chr4_2:67712044-67712063 | None:intergenic | 20.0% |
!!! | TTTGAAGTTAAAATGATATC+AGG | - | chr4_2:67712145-67712164 | None:intergenic | 20.0% |
! | TAAAAGAACTTACTAATGAC+AGG | - | chr4_2:67710449-67710468 | None:intergenic | 25.0% |
! | GAATGTTACACATAATTTGA+AGG | - | chr4_2:67710487-67710506 | None:intergenic | 25.0% |
! | ATTATTTGCTTAAGCCTATA+AGG | + | chr4_2:67710727-67710746 | Msa0617270:CDS | 25.0% |
! | CTTAAGAAAAAGAATACATG+AGG | + | chr4_2:67710782-67710801 | Msa0617270:CDS | 25.0% |
! | AAATGAACTTAACGAAGAAA+AGG | + | chr4_2:67710895-67710914 | Msa0617270:CDS | 25.0% |
!!! | CATCAAATCTAGAATTTTCT+TGG | - | chr4_2:67711239-67711258 | None:intergenic | 25.0% |
!!! | AATATTTCTGAGATGTGTAT+TGG | - | chr4_2:67711444-67711463 | None:intergenic | 25.0% |
!!! | TTTTGAGTTTGAAAACTTAC+AGG | + | chr4_2:67711506-67711525 | Msa0617270:intron | 25.0% |
!!! | ATAGTTTTGGATATTCAGAT+GGG | + | chr4_2:67711708-67711727 | Msa0617270:CDS | 25.0% |
! | TGGGACATTAAAAATTCAAA+TGG | + | chr4_2:67711727-67711746 | Msa0617270:CDS | 25.0% |
! | TGGAATTAATTGAAAGTGAT+TGG | - | chr4_2:67712015-67712034 | None:intergenic | 25.0% |
! | AAAACACCAAGATTTAATCT+TGG | + | chr4_2:67712175-67712194 | Msa0617270:CDS | 25.0% |
!!! | TACCAAAGAAACTTACTTTT+GGG | + | chr4_2:67712220-67712239 | Msa0617270:CDS | 25.0% |
!! | TTAAACTTCCTTTTGTTACA+AGG | + | chr4_2:67712277-67712296 | Msa0617270:CDS | 25.0% |
!! | TTGTTGATGATGATCTAACT+TGG | + | chr4_2:67709733-67709752 | Msa0617270:CDS | 30.0% |
TGAATGAAAGAAAGAAACCT+CGG | - | chr4_2:67709797-67709816 | None:intergenic | 30.0% | |
!! | TATATACCACTTTTAGCACA+TGG | - | chr4_2:67709840-67709859 | None:intergenic | 30.0% |
TGGAATTGTACTGAACTTAT+TGG | - | chr4_2:67709892-67709911 | None:intergenic | 30.0% | |
!! | AATGCTTGCTTTTCTTAAAG+TGG | - | chr4_2:67709912-67709931 | None:intergenic | 30.0% |
! | CTTTAAGAAAAGCAAGCATT+TGG | + | chr4_2:67709912-67709931 | Msa0617270:intron | 30.0% |
! | CCTTTGAAAAAAAAGGGATT+TGG | - | chr4_2:67709968-67709987 | None:intergenic | 30.0% |
!!! | CCAAATCCCTTTTTTTTCAA+AGG | + | chr4_2:67709965-67709984 | Msa0617270:intron | 30.0% |
TTCAAACTTCTTGAACATGT+TGG | + | chr4_2:67710407-67710426 | Msa0617270:CDS | 30.0% | |
GTATCTACAAGTAACATTCT+TGG | + | chr4_2:67710536-67710555 | Msa0617270:intron | 30.0% | |
! | AAGTGTTGTCAGTAAAATCA+TGG | - | chr4_2:67710632-67710651 | None:intergenic | 30.0% |
TGCAATTCTTTCATCCTTAT+AGG | - | chr4_2:67710744-67710763 | None:intergenic | 30.0% | |
AAGAGAATTTGAAAGTCTTG+AGG | + | chr4_2:67710806-67710825 | Msa0617270:CDS | 30.0% | |
AGAGAATTTGAAAGTCTTGA+GGG | + | chr4_2:67710807-67710826 | Msa0617270:CDS | 30.0% | |
GGAATTCACTTAATGAGAAA+TGG | + | chr4_2:67710828-67710847 | Msa0617270:CDS | 30.0% | |
TAAAGAAAGCTAGAGTAGTT+TGG | + | chr4_2:67710970-67710989 | Msa0617270:CDS | 30.0% | |
GTAGATTTATTTAGTGTGCT+TGG | - | chr4_2:67711107-67711126 | None:intergenic | 30.0% | |
CTCTTACACAAAAGATATGA+TGG | - | chr4_2:67711174-67711193 | None:intergenic | 30.0% | |
!! | AATTTCTTTTTGGCAGAAGT+TGG | + | chr4_2:67711211-67711230 | Msa0617270:intron | 30.0% |
!! | CTGATAATGTTGTTTCTGTT+AGG | + | chr4_2:67711366-67711385 | Msa0617270:intron | 30.0% |
! | ATTTTGCTCTTCAGAAATAC+CGG | + | chr4_2:67711543-67711562 | Msa0617270:intron | 30.0% |
!!! | GATAGTTTTGGATATTCAGA+TGG | + | chr4_2:67711707-67711726 | Msa0617270:CDS | 30.0% |
AAAATTCAAATGGATACCAC+AGG | + | chr4_2:67711737-67711756 | Msa0617270:CDS | 30.0% | |
TCTGAACTCTTTCTTATCTT+TGG | - | chr4_2:67711803-67711822 | None:intergenic | 30.0% | |
AAAGATAAGAAAGAGTTCAG+AGG | + | chr4_2:67711802-67711821 | Msa0617270:CDS | 30.0% | |
GAACACACTTGTACAATTAA+AGG | + | chr4_2:67711937-67711956 | Msa0617270:CDS | 30.0% | |
GTGTAACATTTAATGGCAAA+TGG | - | chr4_2:67711973-67711992 | None:intergenic | 30.0% | |
TGTTGCTGTGTAACATTTAA+TGG | - | chr4_2:67711980-67711999 | None:intergenic | 30.0% | |
! | TTGAAAGTGATTGGTCAATT+TGG | - | chr4_2:67712006-67712025 | None:intergenic | 30.0% |
TAATCATTCTTGTAATCGGA+GGG | - | chr4_2:67712040-67712059 | None:intergenic | 30.0% | |
ATGCAACCAAGATTAAATCT+TGG | - | chr4_2:67712184-67712203 | None:intergenic | 30.0% | |
TCTTGGTTGCATTTATGATA+TGG | + | chr4_2:67712192-67712211 | Msa0617270:CDS | 30.0% | |
! | CTACCAAAGAAACTTACTTT+TGG | + | chr4_2:67712219-67712238 | Msa0617270:CDS | 30.0% |
TACCCAAAAGTAAGTTTCTT+TGG | - | chr4_2:67712225-67712244 | None:intergenic | 30.0% | |
CATATTCACCTTGTAACAAA+AGG | - | chr4_2:67712288-67712307 | None:intergenic | 30.0% | |
! | CTCAAAAAATGCTTTTACCG+AGG | + | chr4_2:67709777-67709796 | Msa0617270:CDS | 35.0% |
TCTAGAAGCCAACAAAAATG+CGG | - | chr4_2:67709943-67709962 | None:intergenic | 35.0% | |
CTAGGATGAGATGATAGTAA+TGG | + | chr4_2:67710047-67710066 | Msa0617270:intron | 35.0% | |
TTCACACTCATAACAACGTT+AGG | + | chr4_2:67710103-67710122 | Msa0617270:intron | 35.0% | |
! | TGTTACTTGTAGATACTGAC+TGG | - | chr4_2:67710532-67710551 | None:intergenic | 35.0% |
!! | ATCGAATCCAAGTTGATTCA+CGG | - | chr4_2:67711027-67711046 | None:intergenic | 35.0% |
TAGATTTGATGAATGTTCCG+TGG | + | chr4_2:67711248-67711267 | Msa0617270:CDS | 35.0% | |
TAGAAGGCTAGAATGATAGT+AGG | + | chr4_2:67711397-67711416 | Msa0617270:intron | 35.0% | |
AGAAGGCTAGAATGATAGTA+GGG | + | chr4_2:67711398-67711417 | Msa0617270:intron | 35.0% | |
AATGATCAGAAATTGTCCTC+AGG | + | chr4_2:67711593-67711612 | Msa0617270:CDS | 35.0% | |
! | TGAATGCTTTATTCTACCTG+AGG | - | chr4_2:67711612-67711631 | None:intergenic | 35.0% |
GATTTACCTTCAAAAGATCC+AGG | + | chr4_2:67711632-67711651 | Msa0617270:CDS | 35.0% | |
! | AAACATCCTGGATCTTTTGA+AGG | - | chr4_2:67711641-67711660 | None:intergenic | 35.0% |
TTGAGAAAGCTTAAACATCC+TGG | - | chr4_2:67711653-67711672 | None:intergenic | 35.0% | |
TTCAACAAGCAACAAAACGA+AGG | + | chr4_2:67711677-67711696 | Msa0617270:CDS | 35.0% | |
!!! | TCTTCTTTTTTCATGACCTG+TGG | - | chr4_2:67711756-67711775 | None:intergenic | 35.0% |
ATAAGAAAGAGTTCAGAGGT+AGG | + | chr4_2:67711806-67711825 | Msa0617270:CDS | 35.0% | |
TTACTTCTGATTCCAGAGAT+TGG | - | chr4_2:67711838-67711857 | None:intergenic | 35.0% | |
GTAATCATTCTTGTAATCGG+AGG | - | chr4_2:67712041-67712060 | None:intergenic | 35.0% | |
CATTAGTCCTGTGAATTCAT+CGG | + | chr4_2:67712060-67712079 | Msa0617270:CDS | 35.0% | |
!! | ATCATTTGAGATGAGGCTTT+TGG | - | chr4_2:67712116-67712135 | None:intergenic | 35.0% |
! | GAGATTGATCATTTGAGATG+AGG | - | chr4_2:67712123-67712142 | None:intergenic | 35.0% |
GTCTCTTGTCTATGACAACA+TGG | + | chr4_2:67709650-67709669 | Msa0617270:CDS | 40.0% | |
CTTCATCCATGTGCTAAAAG+TGG | + | chr4_2:67709831-67709850 | Msa0617270:intron | 40.0% | |
AAGCCAACAAAAATGCGGAT+TGG | - | chr4_2:67709938-67709957 | None:intergenic | 40.0% | |
TTTGCGACTCATGTCTTACT+TGG | + | chr4_2:67710132-67710151 | Msa0617270:intron | 40.0% | |
CTCTATTGCTAAGCAACATG+TGG | - | chr4_2:67710309-67710328 | None:intergenic | 40.0% | |
! | CACATGTTGCTTAGCAATAG+AGG | + | chr4_2:67710307-67710326 | Msa0617270:CDS | 40.0% |
CATATGCACCTTTACTTTCG+CGG | - | chr4_2:67710346-67710365 | None:intergenic | 40.0% | |
! | AGTTTGAAACCATCCATGTC+AGG | - | chr4_2:67710395-67710414 | None:intergenic | 40.0% |
TGAACATGTTGGACTTGAGA+TGG | + | chr4_2:67710418-67710437 | Msa0617270:CDS | 40.0% | |
ATTCTTGGTCCGAAAAAAGC+TGG | + | chr4_2:67710551-67710570 | Msa0617270:intron | 40.0% | |
TATGCAGTGATGTCTGTTGA+TGG | + | chr4_2:67710660-67710679 | Msa0617270:intron | 40.0% | |
! | TGTTGATGGAGAAACAAGCA+GGG | + | chr4_2:67710674-67710693 | Msa0617270:CDS | 40.0% |
!! | GTGATGAAAGGTGTTCAACA+TGG | + | chr4_2:67710696-67710715 | Msa0617270:CDS | 40.0% |
!! | GATGGTAACATGTTTGCTGT+AGG | + | chr4_2:67710867-67710886 | Msa0617270:CDS | 40.0% |
AAGTTCGATCTACGAGTTCT+TGG | - | chr4_2:67710947-67710966 | None:intergenic | 40.0% | |
GTTAAAGCCGTGAATCAACT+TGG | + | chr4_2:67711017-67711036 | Msa0617270:CDS | 40.0% | |
! | ACATTTTCTCTAGTCAGCCA+CGG | - | chr4_2:67711268-67711287 | None:intergenic | 40.0% |
AAATGTTGCTAGTCACTTGC+AGG | + | chr4_2:67711282-67711301 | Msa0617270:CDS | 40.0% | |
!! | CATTCTAGCCTTCTAGTTCT+AGG | - | chr4_2:67711392-67711411 | None:intergenic | 40.0% |
GAAGGCTAGAATGATAGTAG+GGG | + | chr4_2:67711399-67711418 | Msa0617270:intron | 40.0% | |
! | AATACCGGCTATACTTGAGT+AGG | + | chr4_2:67711558-67711577 | Msa0617270:CDS | 40.0% |
!! | GAAGGTGCAATCGATAGTTT+TGG | + | chr4_2:67711695-67711714 | Msa0617270:CDS | 40.0% |
!! | TCATTCCAAGAGTACTGTGT+TGG | - | chr4_2:67711887-67711906 | None:intergenic | 40.0% |
ATTCTTGTAATCGGAGGGAT+TGG | - | chr4_2:67712035-67712054 | None:intergenic | 40.0% | |
AAGTTTAAGTCCTCGTCCAA+AGG | - | chr4_2:67712265-67712284 | None:intergenic | 40.0% | |
! | AAAGCATCAAGGTGTGGAGA+AGG | - | chr4_2:67709690-67709709 | None:intergenic | 45.0% |
! | TGGCCAATCCGCATTTTTGT+TGG | + | chr4_2:67709932-67709951 | Msa0617270:intron | 45.0% |
AGTATCCAACAACGCTTGCT+AGG | + | chr4_2:67710029-67710048 | Msa0617270:intron | 45.0% | |
AAGAAGCTCCGCGAAAGTAA+AGG | + | chr4_2:67710335-67710354 | Msa0617270:CDS | 45.0% | |
CGATGTAAACATGCCTGACA+TGG | + | chr4_2:67710379-67710398 | Msa0617270:CDS | 45.0% | |
GTAAACATGCCTGACATGGA+TGG | + | chr4_2:67710383-67710402 | Msa0617270:CDS | 45.0% | |
! | CTTGTAGATACTGACTGGTC+CGG | - | chr4_2:67710527-67710546 | None:intergenic | 45.0% |
! | CTGTTGATGGAGAAACAAGC+AGG | + | chr4_2:67710673-67710692 | Msa0617270:CDS | 45.0% |
GAAACAAGCAGGGTGATGAA+AGG | + | chr4_2:67710684-67710703 | Msa0617270:CDS | 45.0% | |
GGATCAGATCACACGTATGA+TGG | + | chr4_2:67710849-67710868 | Msa0617270:CDS | 45.0% | |
AGCTAGAGTAGTTTGGTCTG+TGG | + | chr4_2:67710977-67710996 | Msa0617270:CDS | 45.0% | |
CTGTTAGGCCTAGAACTAGA+AGG | + | chr4_2:67711381-67711400 | Msa0617270:intron | 45.0% | |
GCAACCTACTCAAGTATAGC+CGG | - | chr4_2:67711565-67711584 | None:intergenic | 45.0% | |
GGTAGGTCTTAACCAATCTC+TGG | + | chr4_2:67711823-67711842 | Msa0617270:CDS | 45.0% | |
TGGTGGAGTCAAATGCTGTA+TGG | - | chr4_2:67711862-67711881 | None:intergenic | 45.0% | |
!! | AGAGTACTGTGTTGGTATGG+TGG | - | chr4_2:67711879-67711898 | None:intergenic | 45.0% |
!! | CCAAGAGTACTGTGTTGGTA+TGG | - | chr4_2:67711882-67711901 | None:intergenic | 45.0% |
CCATACCAACACAGTACTCT+TGG | + | chr4_2:67711879-67711898 | Msa0617270:CDS | 45.0% | |
GTGTTCTGTTCTTCTTCGAG+TGG | - | chr4_2:67711923-67711942 | None:intergenic | 45.0% | |
GAAGACACCGATGAATTCAC+AGG | - | chr4_2:67712070-67712089 | None:intergenic | 45.0% | |
! | GCTTTTGGACTGACTAGGAA+AGG | - | chr4_2:67712101-67712120 | None:intergenic | 45.0% |
! | ATGAGGCTTTTGGACTGACT+AGG | - | chr4_2:67712106-67712125 | None:intergenic | 45.0% |
!! | GCTGGAAAAGCATCAAGGTG+TGG | - | chr4_2:67709696-67709715 | None:intergenic | 50.0% |
! | CACCTTGATGCTTTTCCAGC+TGG | + | chr4_2:67709696-67709715 | Msa0617270:CDS | 50.0% |
!! | GACCAGCTGGAAAAGCATCA+AGG | - | chr4_2:67709701-67709720 | None:intergenic | 50.0% |
! | CTCATCCTAGCAAGCGTTGT+TGG | - | chr4_2:67710037-67710056 | None:intergenic | 50.0% |
GTCCGAAAAAAGCTGGACGA+GGG | + | chr4_2:67710558-67710577 | Msa0617270:intron | 50.0% | |
TCCGAAAAAAGCTGGACGAG+GGG | + | chr4_2:67710559-67710578 | Msa0617270:intron | 50.0% | |
TGAGTCAGCTTCCACACCTT+TGG | + | chr4_2:67712246-67712265 | Msa0617270:CDS | 50.0% | |
TAAGTCCTCGTCCAAAGGTG+TGG | - | chr4_2:67712260-67712279 | None:intergenic | 50.0% | |
ACGAGAACTCGTAGACCAGC+TGG | - | chr4_2:67709714-67709733 | None:intergenic | 55.0% | |
! | TCCTCTCGCAGCTCGTTTTC+CGG | + | chr4_2:67710505-67710524 | Msa0617270:intron | 55.0% |
GGTCCGAAAAAAGCTGGACG+AGG | + | chr4_2:67710557-67710576 | Msa0617270:intron | 55.0% | |
!!! | CCCCCTCGTCCAGCTTTTTT+CGG | - | chr4_2:67710563-67710582 | None:intergenic | 55.0% |
CCGAAAAAAGCTGGACGAGG+GGG | + | chr4_2:67710560-67710579 | Msa0617270:intron | 55.0% | |
AGCTTCCACACCTTTGGACG+AGG | + | chr4_2:67712252-67712271 | Msa0617270:CDS | 55.0% | |
TCCGGAAAACGAGCTGCGAG+AGG | - | chr4_2:67710509-67710528 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 67709636 | 67712342 | 67709636 | ID=Msa0617270;Name=Msa0617270 |
chr4_2 | mRNA | 67709636 | 67712342 | 67709636 | ID=Msa0617270-mRNA-1;Parent=Msa0617270;Name=Msa0617270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|5|0|519 |
chr4_2 | exon | 67709636 | 67709798 | 67709636 | ID=Msa0617270-mRNA-1:exon:19377;Parent=Msa0617270-mRNA-1 |
chr4_2 | exon | 67710303 | 67710455 | 67710303 | ID=Msa0617270-mRNA-1:exon:19378;Parent=Msa0617270-mRNA-1 |
chr4_2 | exon | 67710667 | 67711047 | 67710667 | ID=Msa0617270-mRNA-1:exon:19379;Parent=Msa0617270-mRNA-1 |
chr4_2 | exon | 67711227 | 67711303 | 67711227 | ID=Msa0617270-mRNA-1:exon:19380;Parent=Msa0617270-mRNA-1 |
chr4_2 | exon | 67711557 | 67712342 | 67711557 | ID=Msa0617270-mRNA-1:exon:19381;Parent=Msa0617270-mRNA-1 |
chr4_2 | CDS | 67709636 | 67709798 | 67709636 | ID=Msa0617270-mRNA-1:cds;Parent=Msa0617270-mRNA-1 |
chr4_2 | CDS | 67710303 | 67710455 | 67710303 | ID=Msa0617270-mRNA-1:cds;Parent=Msa0617270-mRNA-1 |
chr4_2 | CDS | 67710667 | 67711047 | 67710667 | ID=Msa0617270-mRNA-1:cds;Parent=Msa0617270-mRNA-1 |
chr4_2 | CDS | 67711227 | 67711303 | 67711227 | ID=Msa0617270-mRNA-1:cds;Parent=Msa0617270-mRNA-1 |
chr4_2 | CDS | 67711557 | 67712342 | 67711557 | ID=Msa0617270-mRNA-1:cds;Parent=Msa0617270-mRNA-1 |
Gene Sequence |
Protein sequence |