Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454950 | sp|Q5J907|TCTP_ELAGV | 91.071 | 168 | 15 | 0 | 1 | 168 | 1 | 168 | 2.60e-110 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454950 | G7I8P9 | 99.405 | 168 | 1 | 0 | 1 | 168 | 1 | 168 | 5.65e-118 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015460 | Msa1454950 | 0.813714 | 2.225423e-51 | -8.615850e-47 |
| Msa0020390 | Msa1454950 | 0.804805 | 1.810850e-49 | -8.615850e-47 |
| Msa0032860 | Msa1454950 | 0.832404 | 9.637795e-56 | -8.615850e-47 |
| Msa0032880 | Msa1454950 | 0.850465 | 1.668670e-60 | -8.615850e-47 |
| Msa0037540 | Msa1454950 | -0.802624 | 5.135666e-49 | -8.615850e-47 |
| Msa0070170 | Msa1454950 | 0.802227 | 6.200752e-49 | -8.615850e-47 |
| Msa0089820 | Msa1454950 | 0.831929 | 1.263408e-55 | -8.615850e-47 |
| Msa0109590 | Msa1454950 | 0.810909 | 9.118996e-51 | -8.615850e-47 |
| Msa0115190 | Msa1454950 | 0.817622 | 2.998080e-52 | -8.615850e-47 |
| Msa0118540 | Msa1454950 | 0.825675 | 4.118881e-54 | -8.615850e-47 |
| Msa1351540 | Msa1454950 | 0.800711 | 1.267979e-48 | -8.615850e-47 |
| Msa1355890 | Msa1454950 | 0.805681 | 1.186908e-49 | -8.615850e-47 |
| Msa1358670 | Msa1454950 | 0.832204 | 1.080437e-55 | -8.615850e-47 |
| Msa1359270 | Msa1454950 | 0.827183 | 1.801171e-54 | -8.615850e-47 |
| Msa1364940 | Msa1454950 | 0.831591 | 1.530221e-55 | -8.615850e-47 |
| Msa1367490 | Msa1454950 | 0.841307 | 5.144079e-58 | -8.615850e-47 |
| Msa1381480 | Msa1454950 | 0.802448 | 5.583724e-49 | -8.615850e-47 |
| Msa1417570 | Msa1454950 | 0.825419 | 4.737300e-54 | -8.615850e-47 |
| Msa1422810 | Msa1454950 | 0.819816 | 9.522055e-53 | -8.615850e-47 |
| Msa1424620 | Msa1454950 | 0.838080 | 3.556374e-57 | -8.615850e-47 |
| Msa1443610 | Msa1454950 | 0.807971 | 3.895386e-50 | -8.615850e-47 |
| Msa1454450 | Msa1454950 | 0.817460 | 3.260684e-52 | -8.615850e-47 |
| Msa1454950 | Msa1460320 | -0.814243 | 1.701579e-51 | -8.615850e-47 |
| Msa0643320 | Msa1454950 | 0.808242 | 3.410345e-50 | -8.615850e-47 |
| Msa0661710 | Msa1454950 | 0.833065 | 6.603747e-56 | -8.615850e-47 |
| Msa0682090 | Msa1454950 | 0.802631 | 5.118748e-49 | -8.615850e-47 |
| Msa0682140 | Msa1454950 | 0.804997 | 1.650736e-49 | -8.615850e-47 |
| Msa0683140 | Msa1454950 | 0.824580 | 7.474019e-54 | -8.615850e-47 |
| Msa0683600 | Msa1454950 | 0.805107 | 1.566112e-49 | -8.615850e-47 |
| Msa0713350 | Msa1454950 | 0.809121 | 2.212888e-50 | -8.615850e-47 |
| Msa0716420 | Msa1454950 | -0.812167 | 4.858662e-51 | -8.615850e-47 |
| Msa0747260 | Msa1454950 | 0.829667 | 4.527320e-55 | -8.615850e-47 |
| Msa0747270 | Msa1454950 | 0.810330 | 1.216410e-50 | -8.615850e-47 |
| Msa0784860 | Msa1454950 | 0.809676 | 1.682283e-50 | -8.615850e-47 |
| Msa0799010 | Msa1454950 | -0.808527 | 2.964226e-50 | -8.615850e-47 |
| Msa0833190 | Msa1454950 | -0.807188 | 5.711364e-50 | -8.615850e-47 |
| Msa0129190 | Msa1454950 | -0.802012 | 6.866538e-49 | -8.615850e-47 |
| Msa0155880 | Msa1454950 | 0.805266 | 1.450153e-49 | -8.615850e-47 |
| Msa0183460 | Msa1454950 | 0.800203 | 1.608733e-48 | -8.615850e-47 |
| Msa0186310 | Msa1454950 | 0.864419 | 1.232448e-64 | -8.615850e-47 |
| Msa0187230 | Msa1454950 | 0.882080 | 1.405274e-70 | -8.615850e-47 |
| Msa0189520 | Msa1454950 | 0.807599 | 4.672258e-50 | -8.615850e-47 |
| Msa0207700 | Msa1454950 | 0.803564 | 3.282685e-49 | -8.615850e-47 |
| Msa0209500 | Msa1454950 | 0.808192 | 3.494858e-50 | -8.615850e-47 |
| Msa0230560 | Msa1454950 | 0.883299 | 5.048288e-71 | -8.615850e-47 |
| Msa0231790 | Msa1454950 | 0.838376 | 2.983442e-57 | -8.615850e-47 |
| Msa0233380 | Msa1454950 | 0.828140 | 1.060674e-54 | -8.615850e-47 |
| Msa1253810 | Msa1454950 | 0.838454 | 2.847787e-57 | -8.615850e-47 |
| Msa1270660 | Msa1454950 | 0.808897 | 2.471085e-50 | -8.615850e-47 |
| Msa1296830 | Msa1454950 | 0.813840 | 2.087385e-51 | -8.615850e-47 |
| Msa1303580 | Msa1454950 | 0.813831 | 2.097441e-51 | -8.615850e-47 |
| Msa0365860 | Msa1454950 | 0.805388 | 1.367723e-49 | -8.615850e-47 |
| Msa0380100 | Msa1454950 | 0.827818 | 1.267646e-54 | -8.615850e-47 |
| Msa0385490 | Msa1454950 | 0.809459 | 1.872863e-50 | -8.615850e-47 |
| Msa0386040 | Msa1454950 | 0.844318 | 8.141239e-59 | -8.615850e-47 |
| Msa0387910 | Msa1454950 | 0.820236 | 7.630455e-53 | -8.615850e-47 |
| Msa0394280 | Msa1454950 | 0.808798 | 2.594315e-50 | -8.615850e-47 |
| Msa0427860 | Msa1454950 | -0.802138 | 6.467934e-49 | -8.615850e-47 |
| Msa0429950 | Msa1454950 | 0.801706 | 7.934380e-49 | -8.615850e-47 |
| Msa0435690 | Msa1454950 | 0.813566 | 2.398994e-51 | -8.615850e-47 |
| Msa0436190 | Msa1454950 | 0.815138 | 1.077734e-51 | -8.615850e-47 |
| Msa0436920 | Msa1454950 | -0.816335 | 5.831257e-52 | -8.615850e-47 |
| Msa0457510 | Msa1454950 | 0.802325 | 5.917825e-49 | -8.615850e-47 |
| Msa0463340 | Msa1454950 | 0.824006 | 1.019474e-53 | -8.615850e-47 |
| Msa0467220 | Msa1454950 | 0.816473 | 5.430117e-52 | -8.615850e-47 |
| Msa0469620 | Msa1454950 | -0.807502 | 4.898516e-50 | -8.615850e-47 |
| Msa0473830 | Msa1454950 | -0.814266 | 1.681475e-51 | -8.615850e-47 |
| Msa0980020 | Msa1454950 | 0.801445 | 8.974138e-49 | -8.615850e-47 |
| Msa0994370 | Msa1454950 | 0.829448 | 5.118850e-55 | -8.615850e-47 |
| Msa0994390 | Msa1454950 | 0.804296 | 2.312629e-49 | -8.615850e-47 |
| Msa1000930 | Msa1454950 | 0.817227 | 3.678436e-52 | -8.615850e-47 |
| Msa1002600 | Msa1454950 | -0.822923 | 1.827035e-53 | -8.615850e-47 |
| Msa1045050 | Msa1454950 | 0.806314 | 8.737606e-50 | -8.615850e-47 |
| Msa1064250 | Msa1454950 | 0.810872 | 9.286319e-51 | -8.615850e-47 |
| Msa1068870 | Msa1454950 | 0.803493 | 3.396460e-49 | -8.615850e-47 |
| Msa1072900 | Msa1454950 | 0.805988 | 1.022981e-49 | -8.615850e-47 |
| Msa1084500 | Msa1454950 | -0.807296 | 5.418252e-50 | -8.615850e-47 |
| Msa1088290 | Msa1454950 | 0.818537 | 1.861791e-52 | -8.615850e-47 |
| Msa1094430 | Msa1454950 | 0.802223 | 6.211146e-49 | -8.615850e-47 |
| Msa0259210 | Msa1454950 | 0.816243 | 6.113872e-52 | -8.615850e-47 |
| Msa0261360 | Msa1454950 | 0.812615 | 3.877465e-51 | -8.615850e-47 |
| Msa0271360 | Msa1454950 | 0.856972 | 2.240295e-62 | -8.615850e-47 |
| Msa0296820 | Msa1454950 | 0.817691 | 2.891854e-52 | -8.615850e-47 |
| Msa0296920 | Msa1454950 | 0.800766 | 1.235443e-48 | -8.615850e-47 |
| Msa0336320 | Msa1454950 | 0.800841 | 1.192450e-48 | -8.615850e-47 |
| Msa1120810 | Msa1454950 | 0.802692 | 4.973419e-49 | -8.615850e-47 |
| Msa1126120 | Msa1454950 | -0.804870 | 1.755275e-49 | -8.615850e-47 |
| Msa1133230 | Msa1454950 | 0.859022 | 5.512402e-63 | -8.615850e-47 |
| Msa1133250 | Msa1454950 | 0.860523 | 1.946345e-63 | -8.615850e-47 |
| Msa1173900 | Msa1454950 | 0.818315 | 2.089941e-52 | -8.615850e-47 |
| Msa1177780 | Msa1454950 | 0.816986 | 4.166909e-52 | -8.615850e-47 |
| Msa1188600 | Msa1454950 | -0.816803 | 4.580629e-52 | -8.615850e-47 |
| Msa0485680 | Msa1454950 | 0.802448 | 5.584075e-49 | -8.615850e-47 |
| Msa0507670 | Msa1454950 | 0.803190 | 3.923730e-49 | -8.615850e-47 |
| Msa0518070 | Msa1454950 | -0.812024 | 5.219611e-51 | -8.615850e-47 |
| Msa0521740 | Msa1454950 | 0.832830 | 7.557094e-56 | -8.615850e-47 |
| Msa0524290 | Msa1454950 | 0.829848 | 4.092088e-55 | -8.615850e-47 |
| Msa0524400 | Msa1454950 | 0.820774 | 5.743716e-53 | -8.615850e-47 |
| Msa0530100 | Msa1454950 | 0.811055 | 8.478417e-51 | -8.615850e-47 |
| Msa0534050 | Msa1454950 | 0.804168 | 2.458785e-49 | -8.615850e-47 |
| Msa0545080 | Msa1454950 | 0.830117 | 3.518241e-55 | -8.615850e-47 |
| Msa0563470 | Msa1454950 | 0.811653 | 6.287593e-51 | -8.615850e-47 |
| Msa0602370 | Msa1454950 | 0.803861 | 2.848507e-49 | -8.615850e-47 |
| Msa0860900 | Msa1454950 | -0.801107 | 1.052330e-48 | -8.615850e-47 |
| Msa0879860 | Msa1454950 | 0.808434 | 3.103552e-50 | -8.615850e-47 |
| Msa0890550 | Msa1454950 | 0.801892 | 7.265224e-49 | -8.615850e-47 |
| Msa0901320 | Msa1454950 | 0.803563 | 3.283675e-49 | -8.615850e-47 |
| Msa0933290 | Msa1454950 | 0.812331 | 4.473592e-51 | -8.615850e-47 |
| Msa0937330 | Msa1454950 | 0.806615 | 7.548711e-50 | -8.615850e-47 |
| Msa0944610 | Msa1454950 | 0.819134 | 1.362131e-52 | -8.615850e-47 |
| Msa0944870 | Msa1454950 | 0.815064 | 1.119587e-51 | -8.615850e-47 |
| Msa0945120 | Msa1454950 | 0.802910 | 4.483038e-49 | -8.615850e-47 |
| Msa0951400 | Msa1454950 | 0.824360 | 8.419214e-54 | -8.615850e-47 |
| Msa0960740 | Msa1454950 | 0.800519 | 1.387758e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454950 | MtrunA17_Chr1g0192171 | 99.405 | 168 | 1 | 0 | 1 | 168 | 1 | 168 | 1.09e-121 | 340 |
| Msa1454950 | MtrunA17_Chr1g0192201 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 8.85e-121 | 337 |
| Msa1454950 | MtrunA17_Chr2g0295871 | 86.310 | 168 | 22 | 1 | 1 | 168 | 1 | 167 | 2.40e-103 | 293 |
| Msa1454950 | MtrunA17_Chr6g0479151 | 81.366 | 161 | 29 | 1 | 1 | 161 | 1 | 160 | 9.32e-91 | 261 |
| Msa1454950 | MtrunA17_Chr1g0192161 | 86.047 | 129 | 18 | 0 | 19 | 147 | 9 | 137 | 1.98e-75 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454950 | AT3G16640.1 | 79.167 | 168 | 35 | 0 | 1 | 168 | 1 | 168 | 4.73e-97 | 278 |
| Msa1454950 | AT3G05540.1 | 80.473 | 169 | 31 | 2 | 1 | 168 | 1 | 168 | 3.36e-90 | 260 |
Find 39 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATTGTTGACACTTTC+AGG | 0.110440 | tig0035540:-13794 | Msa1454950:CDS |
| TTTAAATTGATGTTCTTAAT+TGG | 0.245351 | tig0035540:-13355 | Msa1454950:three_prime_UTR |
| AATTGTAGGTCTTTGAGTTT+TGG | 0.259902 | tig0035540:+13630 | None:intergenic |
| GTTTACCAGGATCTTCTTAC+AGG | 0.263960 | tig0035540:-14749 | Msa1454950:intron |
| TGTTGACACTTTCAGGCTTC+AGG | 0.310211 | tig0035540:-13787 | Msa1454950:CDS |
| TCCATTCTCAATTTCCTTGT+AGG | 0.365251 | tig0035540:+14065 | None:intergenic |
| CTACTTTGCCTATGGCTTGA+AGG | 0.378916 | tig0035540:-13418 | Msa1454950:CDS |
| GATGAAACACATACAATTGT+AGG | 0.393371 | tig0035540:+13616 | None:intergenic |
| TGCAACCATGCTTGTTTACC+AGG | 0.395604 | tig0035540:-14762 | Msa1454950:exon |
| ACAAGCATGGTTGCAGTTGT+TGG | 0.399920 | tig0035540:+14770 | None:intergenic |
| AATTGAGAATGGAATGCTTT+GGG | 0.401755 | tig0035540:-14055 | Msa1454950:CDS |
| CCATTCTCAATTTCCTTGTA+GGG | 0.404442 | tig0035540:+14066 | None:intergenic |
| AATTGCTTCTTATCAAAAGC+TGG | 0.428621 | tig0035540:+13759 | None:intergenic |
| GAATGGAATGCTTTGGGAAG+TGG | 0.450476 | tig0035540:-14049 | Msa1454950:CDS |
| AAATTGAGAATGGAATGCTT+TGG | 0.455334 | tig0035540:-14056 | Msa1454950:CDS |
| CCTTGTGTTTGCTTACTACA+AGG | 0.455642 | tig0035540:-13466 | Msa1454950:CDS |
| TAGGCAAAGTAGAGAAAAGT+TGG | 0.474181 | tig0035540:+13429 | None:intergenic |
| CCCTACAAGGAAATTGAGAA+TGG | 0.477742 | tig0035540:-14066 | Msa1454950:CDS |
| TATTTGCAGTGGGTTGTTCA+AGG | 0.483236 | tig0035540:-13903 | Msa1454950:intron |
| CTCTGACTCATTCCCCTACA+AGG | 0.486361 | tig0035540:-14079 | Msa1454950:CDS |
| GGAGCAGTGGATGTGAATAT+TGG | 0.501116 | tig0035540:-13882 | Msa1454950:CDS |
| TTATACCTGTAAGAAGATCC+TGG | 0.509601 | tig0035540:+14744 | None:intergenic |
| GGTGCTAATCCTTCTGCTGA+GGG | 0.511283 | tig0035540:-13861 | Msa1454950:CDS |
| CTTGATTTCCTTCAAGCCAT+AGG | 0.517168 | tig0035540:+13410 | None:intergenic |
| GCTTTGGGAAGTGGAAGGAA+AGG | 0.531642 | tig0035540:-14040 | Msa1454950:intron |
| GTGTTTGCTTACTACAAGGA+TGG | 0.538874 | tig0035540:-13462 | Msa1454950:CDS |
| CATTCTCAATTTCCTTGTAG+GGG | 0.549656 | tig0035540:+14067 | None:intergenic |
| TGGTGCTAATCCTTCTGCTG+AGG | 0.557106 | tig0035540:-13862 | Msa1454950:CDS |
| TCGTCTCCACCCTCAGCAGA+AGG | 0.563383 | tig0035540:+13852 | None:intergenic |
| GGGGAGAGCATGCATGATGA+TGG | 0.565967 | tig0035540:-13492 | Msa1454950:CDS |
| GCTAATCCTTCTGCTGAGGG+TGG | 0.579304 | tig0035540:-13858 | Msa1454950:CDS |
| TTCTGCTGAGGGTGGAGACG+AGG | 0.580750 | tig0035540:-13850 | Msa1454950:CDS |
| AAGATCCTGGTAAACAAGCA+TGG | 0.602746 | tig0035540:+14757 | None:intergenic |
| GTAGAGAAAAGTTGGATCAG+TGG | 0.605758 | tig0035540:+13437 | None:intergenic |
| GAGGGTGGAGACGAGGATGA+TGG | 0.616662 | tig0035540:-13843 | Msa1454950:CDS |
| CCTTGTAGTAAGCAAACACA+AGG | 0.635355 | tig0035540:+13466 | None:intergenic |
| GTGGGTTGTTCAAGGAGCAG+TGG | 0.636439 | tig0035540:-13895 | Msa1454950:CDS |
| GGAATGCTTTGGGAAGTGGA+AGG | 0.659950 | tig0035540:-14045 | Msa1454950:CDS |
| CGATGATCAAGCTGTCAAAG+TGG | 0.698235 | tig0035540:-13817 | Msa1454950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTATGAACATATATT+TGG | + | tig0035540:14173-14192 | None:intergenic | 10.0% |
| !! | TTTATTTATGAACATATATT+TGG | + | tig0035540:14173-14192 | None:intergenic | 10.0% |
| !!! | AACAAGTTTTATCAAAATTT+TGG | + | tig0035540:13745-13764 | None:intergenic | 15.0% |
| !!! | AAAATTTTGATAAAACTTGT+TGG | - | tig0035540:13744-13763 | Msa1454950:CDS | 15.0% |
| !!! | ATATTTAAGATTATTGCTTT+TGG | - | tig0035540:13950-13969 | Msa1454950:intron | 15.0% |
| !! | TAAACTTAATAAAACCAAAA+AGG | + | tig0035540:14547-14566 | None:intergenic | 15.0% |
| !! | TTTAAATTGATGTTCTTAAT+TGG | - | tig0035540:14770-14789 | Msa1454950:exon | 15.0% |
| !!! | AACAAGTTTTATCAAAATTT+TGG | + | tig0035540:13745-13764 | None:intergenic | 15.0% |
| !!! | AAAATTTTGATAAAACTTGT+TGG | - | tig0035540:13744-13763 | Msa1454950:CDS | 15.0% |
| !!! | ATATTTAAGATTATTGCTTT+TGG | - | tig0035540:13950-13969 | Msa1454950:intron | 15.0% |
| !! | TAAACTTAATAAAACCAAAA+AGG | + | tig0035540:14547-14566 | None:intergenic | 15.0% |
| !! | TTTAAATTGATGTTCTTAAT+TGG | - | tig0035540:14770-14789 | Msa1454950:exon | 15.0% |
| !! | AAAAAAATCTCAAAGATGAA+AGG | + | tig0035540:13410-13429 | None:intergenic | 20.0% |
| !!! | AATTATTTAAAACCAAAGTG+AGG | + | tig0035540:13552-13571 | None:intergenic | 20.0% |
| !!! | AACTTCTCTGTTTTATATAT+GGG | + | tig0035540:13580-13599 | None:intergenic | 20.0% |
| !!! | AAACTTCTCTGTTTTATATA+TGG | + | tig0035540:13581-13600 | None:intergenic | 20.0% |
| !!! | TATAAAACAGAGAAGTTTTA+TGG | - | tig0035540:13583-13602 | Msa1454950:intron | 20.0% |
| !! | AAAAAAATCTCAAAGATGAA+AGG | + | tig0035540:13410-13429 | None:intergenic | 20.0% |
| !!! | AATTATTTAAAACCAAAGTG+AGG | + | tig0035540:13552-13571 | None:intergenic | 20.0% |
| !!! | AACTTCTCTGTTTTATATAT+GGG | + | tig0035540:13580-13599 | None:intergenic | 20.0% |
| !!! | AAACTTCTCTGTTTTATATA+TGG | + | tig0035540:13581-13600 | None:intergenic | 20.0% |
| !!! | TATAAAACAGAGAAGTTTTA+TGG | - | tig0035540:13583-13602 | Msa1454950:intron | 20.0% |
| ! | GAAAAACAAACGAAAACTAA+AGG | + | tig0035540:13433-13452 | None:intergenic | 25.0% |
| ! | TCCTGTATTTAGTACATAAT+TGG | - | tig0035540:13502-13521 | Msa1454950:CDS | 25.0% |
| ! | TCCAATTATGTACTAAATAC+AGG | + | tig0035540:13506-13525 | None:intergenic | 25.0% |
| !!! | CTTAAAACTTCTCTGTTTTT+TGG | + | tig0035540:13634-13653 | None:intergenic | 25.0% |
| !! | CAAAAAACAGAGAAGTTTTA+AGG | - | tig0035540:13632-13651 | Msa1454950:CDS | 25.0% |
| ! | AAATATTCATGTAACACTTG+TGG | + | tig0035540:13826-13845 | None:intergenic | 25.0% |
| ! | AAAATCCACAATCAAGTATT+AGG | + | tig0035540:13875-13894 | None:intergenic | 25.0% |
| !!! | GATTGTGGATTTTATTTTCT+TGG | - | tig0035540:13882-13901 | Msa1454950:CDS | 25.0% |
| ! | TAATGTTGCTAACTTTACTT+TGG | - | tig0035540:13994-14013 | Msa1454950:intron | 25.0% |
| ! | GATTAATTACTCAATCAGTT+AGG | + | tig0035540:14596-14615 | None:intergenic | 25.0% |
| !!! | AATCAATGTTACAGTTTTGT+TGG | - | tig0035540:14612-14631 | Msa1454950:intron | 25.0% |
| !!! | ATCAATGTTACAGTTTTGTT+GGG | - | tig0035540:14613-14632 | Msa1454950:intron | 25.0% |
| ! | GAAAAACAAACGAAAACTAA+AGG | + | tig0035540:13433-13452 | None:intergenic | 25.0% |
| ! | TCCTGTATTTAGTACATAAT+TGG | - | tig0035540:13502-13521 | Msa1454950:CDS | 25.0% |
| ! | TCCAATTATGTACTAAATAC+AGG | + | tig0035540:13506-13525 | None:intergenic | 25.0% |
| !!! | CTTAAAACTTCTCTGTTTTT+TGG | + | tig0035540:13634-13653 | None:intergenic | 25.0% |
| !! | CAAAAAACAGAGAAGTTTTA+AGG | - | tig0035540:13632-13651 | Msa1454950:CDS | 25.0% |
| ! | AAATATTCATGTAACACTTG+TGG | + | tig0035540:13826-13845 | None:intergenic | 25.0% |
| ! | AAAATCCACAATCAAGTATT+AGG | + | tig0035540:13875-13894 | None:intergenic | 25.0% |
| !!! | GATTGTGGATTTTATTTTCT+TGG | - | tig0035540:13882-13901 | Msa1454950:CDS | 25.0% |
| ! | TAATGTTGCTAACTTTACTT+TGG | - | tig0035540:13994-14013 | Msa1454950:intron | 25.0% |
| ! | GATTAATTACTCAATCAGTT+AGG | + | tig0035540:14596-14615 | None:intergenic | 25.0% |
| !!! | AATCAATGTTACAGTTTTGT+TGG | - | tig0035540:14612-14631 | Msa1454950:intron | 25.0% |
| !!! | ATCAATGTTACAGTTTTGTT+GGG | - | tig0035540:14613-14632 | Msa1454950:intron | 25.0% |
| GGTTTAACCTTTAGATTTGA+AGG | - | tig0035540:13695-13714 | Msa1454950:CDS | 30.0% | |
| TTTCACTCCTTCAAATCTAA+AGG | + | tig0035540:13705-13724 | None:intergenic | 30.0% | |
| !!! | AAAGTTGTTGTTTTTGTGAC+AGG | - | tig0035540:13776-13795 | Msa1454950:CDS | 30.0% |
| !!! | AAGTTGTTGTTTTTGTGACA+GGG | - | tig0035540:13777-13796 | Msa1454950:CDS | 30.0% |
| GTTAGGGTAATCATGTTTAA+GGG | + | tig0035540:13853-13872 | None:intergenic | 30.0% | |
| CACAATCAAGTATTAGGTTA+GGG | + | tig0035540:13869-13888 | None:intergenic | 30.0% | |
| !! | ATTTTCTTGGTTACTGATTG+TGG | - | tig0035540:13895-13914 | Msa1454950:CDS | 30.0% |
| AAATTGAGAATGGAATGCTT+TGG | - | tig0035540:14069-14088 | Msa1454950:CDS | 30.0% | |
| AATTGAGAATGGAATGCTTT+GGG | - | tig0035540:14070-14089 | Msa1454950:CDS | 30.0% | |
| CACATCACACAATAAACTTT+AGG | + | tig0035540:14200-14219 | None:intergenic | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | - | tig0035540:14331-14350 | Msa1454950:intron | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | + | tig0035540:14369-14388 | None:intergenic | 30.0% | |
| !! | ATTGTAGGTCTTTGAGTTTT+GGG | + | tig0035540:14497-14516 | None:intergenic | 30.0% |
| !! | AATTGTAGGTCTTTGAGTTT+TGG | + | tig0035540:14498-14517 | None:intergenic | 30.0% |
| GATGAAACACATACAATTGT+AGG | + | tig0035540:14512-14531 | None:intergenic | 30.0% | |
| ! | TCACTATCTTTCATCCTTTT+TGG | - | tig0035540:14530-14549 | Msa1454950:intron | 30.0% |
| !!! | TCAATGTTACAGTTTTGTTG+GGG | - | tig0035540:14614-14633 | Msa1454950:intron | 30.0% |
| GGTTTAACCTTTAGATTTGA+AGG | - | tig0035540:13695-13714 | Msa1454950:CDS | 30.0% | |
| TTTCACTCCTTCAAATCTAA+AGG | + | tig0035540:13705-13724 | None:intergenic | 30.0% | |
| !!! | AAAGTTGTTGTTTTTGTGAC+AGG | - | tig0035540:13776-13795 | Msa1454950:CDS | 30.0% |
| !!! | AAGTTGTTGTTTTTGTGACA+GGG | - | tig0035540:13777-13796 | Msa1454950:CDS | 30.0% |
| GTTAGGGTAATCATGTTTAA+GGG | + | tig0035540:13853-13872 | None:intergenic | 30.0% | |
| CACAATCAAGTATTAGGTTA+GGG | + | tig0035540:13869-13888 | None:intergenic | 30.0% | |
| !! | ATTTTCTTGGTTACTGATTG+TGG | - | tig0035540:13895-13914 | Msa1454950:CDS | 30.0% |
| AAATTGAGAATGGAATGCTT+TGG | - | tig0035540:14069-14088 | Msa1454950:CDS | 30.0% | |
| AATTGAGAATGGAATGCTTT+GGG | - | tig0035540:14070-14089 | Msa1454950:CDS | 30.0% | |
| CACATCACACAATAAACTTT+AGG | + | tig0035540:14200-14219 | None:intergenic | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | - | tig0035540:14331-14350 | Msa1454950:intron | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | + | tig0035540:14369-14388 | None:intergenic | 30.0% | |
| !! | ATTGTAGGTCTTTGAGTTTT+GGG | + | tig0035540:14497-14516 | None:intergenic | 30.0% |
| !! | AATTGTAGGTCTTTGAGTTT+TGG | + | tig0035540:14498-14517 | None:intergenic | 30.0% |
| GATGAAACACATACAATTGT+AGG | + | tig0035540:14512-14531 | None:intergenic | 30.0% | |
| ! | TCACTATCTTTCATCCTTTT+TGG | - | tig0035540:14530-14549 | Msa1454950:intron | 30.0% |
| !!! | TCAATGTTACAGTTTTGTTG+GGG | - | tig0035540:14614-14633 | Msa1454950:intron | 30.0% |
| TTATACCTGTAAGAAGATCC+TGG | + | tig0035540:13384-13403 | None:intergenic | 35.0% | |
| GTTTCTCATAAACCTCACTT+TGG | - | tig0035540:13537-13556 | Msa1454950:intron | 35.0% | |
| ! | AGTTTTCTGTTTGTGTTCTG+TGG | - | tig0035540:13674-13693 | Msa1454950:CDS | 35.0% |
| !!! | AGTTGTTGTTTTTGTGACAG+GGG | - | tig0035540:13778-13797 | Msa1454950:CDS | 35.0% |
| GGTTAGGGTAATCATGTTTA+AGG | + | tig0035540:13854-13873 | None:intergenic | 35.0% | |
| CCACAATCAAGTATTAGGTT+AGG | + | tig0035540:13870-13889 | None:intergenic | 35.0% | |
| CCTAACCTAATACTTGATTG+TGG | - | tig0035540:13867-13886 | Msa1454950:CDS | 35.0% | |
| ! | CTTTGGCGATGAATTTTTCT+AGG | - | tig0035540:14011-14030 | Msa1454950:intron | 35.0% |
| CATTCTCAATTTCCTTGTAG+GGG | + | tig0035540:14061-14080 | None:intergenic | 35.0% | |
| CCATTCTCAATTTCCTTGTA+GGG | + | tig0035540:14062-14081 | None:intergenic | 35.0% | |
| TCCATTCTCAATTTCCTTGT+AGG | + | tig0035540:14063-14082 | None:intergenic | 35.0% | |
| TGTGATGTGATTATTTGCAG+TGG | - | tig0035540:14211-14230 | Msa1454950:intron | 35.0% | |
| GTGATGTGATTATTTGCAGT+GGG | - | tig0035540:14212-14231 | Msa1454950:intron | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | + | tig0035540:14441-14460 | None:intergenic | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | + | tig0035540:14699-14718 | None:intergenic | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | - | tig0035540:14699-14718 | Msa1454950:intron | 35.0% |
| TTATACCTGTAAGAAGATCC+TGG | + | tig0035540:13384-13403 | None:intergenic | 35.0% | |
| GTTTCTCATAAACCTCACTT+TGG | - | tig0035540:13537-13556 | Msa1454950:intron | 35.0% | |
| ! | AGTTTTCTGTTTGTGTTCTG+TGG | - | tig0035540:13674-13693 | Msa1454950:CDS | 35.0% |
| !!! | AGTTGTTGTTTTTGTGACAG+GGG | - | tig0035540:13778-13797 | Msa1454950:CDS | 35.0% |
| GGTTAGGGTAATCATGTTTA+AGG | + | tig0035540:13854-13873 | None:intergenic | 35.0% | |
| CCACAATCAAGTATTAGGTT+AGG | + | tig0035540:13870-13889 | None:intergenic | 35.0% | |
| CCTAACCTAATACTTGATTG+TGG | - | tig0035540:13867-13886 | Msa1454950:CDS | 35.0% | |
| ! | CTTTGGCGATGAATTTTTCT+AGG | - | tig0035540:14011-14030 | Msa1454950:intron | 35.0% |
| CATTCTCAATTTCCTTGTAG+GGG | + | tig0035540:14061-14080 | None:intergenic | 35.0% | |
| CCATTCTCAATTTCCTTGTA+GGG | + | tig0035540:14062-14081 | None:intergenic | 35.0% | |
| TCCATTCTCAATTTCCTTGT+AGG | + | tig0035540:14063-14082 | None:intergenic | 35.0% | |
| TGTGATGTGATTATTTGCAG+TGG | - | tig0035540:14211-14230 | Msa1454950:intron | 35.0% | |
| GTGATGTGATTATTTGCAGT+GGG | - | tig0035540:14212-14231 | Msa1454950:intron | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | + | tig0035540:14441-14460 | None:intergenic | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | + | tig0035540:14699-14718 | None:intergenic | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | - | tig0035540:14699-14718 | Msa1454950:intron | 35.0% |
| AAGATCCTGGTAAACAAGCA+TGG | + | tig0035540:13371-13390 | None:intergenic | 40.0% | |
| GTTTACCAGGATCTTCTTAC+AGG | - | tig0035540:13376-13395 | Msa1454950:three_prime_UTR | 40.0% | |
| CCCTACAAGGAAATTGAGAA+TGG | - | tig0035540:14059-14078 | Msa1454950:CDS | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | - | tig0035540:14222-14241 | Msa1454950:intron | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | + | tig0035540:14662-14681 | None:intergenic | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | - | tig0035540:14659-14678 | Msa1454950:intron | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | - | tig0035540:14663-14682 | Msa1454950:intron | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | + | tig0035540:14691-14710 | None:intergenic | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | + | tig0035540:14718-14737 | None:intergenic | 40.0% | |
| AAGATCCTGGTAAACAAGCA+TGG | + | tig0035540:13371-13390 | None:intergenic | 40.0% | |
| GTTTACCAGGATCTTCTTAC+AGG | - | tig0035540:13376-13395 | Msa1454950:three_prime_UTR | 40.0% | |
| CCCTACAAGGAAATTGAGAA+TGG | - | tig0035540:14059-14078 | Msa1454950:CDS | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | - | tig0035540:14222-14241 | Msa1454950:intron | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | + | tig0035540:14662-14681 | None:intergenic | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | - | tig0035540:14659-14678 | Msa1454950:intron | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | - | tig0035540:14663-14682 | Msa1454950:intron | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | + | tig0035540:14691-14710 | None:intergenic | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | + | tig0035540:14718-14737 | None:intergenic | 40.0% | |
| ACAAGCATGGTTGCAGTTGT+TGG | + | tig0035540:13358-13377 | None:intergenic | 45.0% | |
| TGCAACCATGCTTGTTTACC+AGG | - | tig0035540:13363-13382 | Msa1454950:three_prime_UTR | 45.0% | |
| !! | GAATGGAATGCTTTGGGAAG+TGG | - | tig0035540:14076-14095 | Msa1454950:CDS | 45.0% |
| GGAGCAGTGGATGTGAATAT+TGG | - | tig0035540:14243-14262 | Msa1454950:intron | 45.0% | |
| CGATGATCAAGCTGTCAAAG+TGG | - | tig0035540:14308-14327 | Msa1454950:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | - | tig0035540:14338-14357 | Msa1454950:intron | 45.0% | |
| !!! | GGTCTTTGAGTTTTGGGAGA+AGG | + | tig0035540:14491-14510 | None:intergenic | 45.0% |
| CTACTTTGCCTATGGCTTGA+AGG | - | tig0035540:14707-14726 | Msa1454950:intron | 45.0% | |
| ACAAGCATGGTTGCAGTTGT+TGG | + | tig0035540:13358-13377 | None:intergenic | 45.0% | |
| TGCAACCATGCTTGTTTACC+AGG | - | tig0035540:13363-13382 | Msa1454950:three_prime_UTR | 45.0% | |
| !! | GAATGGAATGCTTTGGGAAG+TGG | - | tig0035540:14076-14095 | Msa1454950:CDS | 45.0% |
| GGAGCAGTGGATGTGAATAT+TGG | - | tig0035540:14243-14262 | Msa1454950:intron | 45.0% | |
| CGATGATCAAGCTGTCAAAG+TGG | - | tig0035540:14308-14327 | Msa1454950:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | - | tig0035540:14338-14357 | Msa1454950:intron | 45.0% | |
| !!! | GGTCTTTGAGTTTTGGGAGA+AGG | + | tig0035540:14491-14510 | None:intergenic | 45.0% |
| CTACTTTGCCTATGGCTTGA+AGG | - | tig0035540:14707-14726 | Msa1454950:intron | 45.0% | |
| CTCTGACTCATTCCCCTACA+AGG | - | tig0035540:14046-14065 | Msa1454950:CDS | 50.0% | |
| !! | GGAATGCTTTGGGAAGTGGA+AGG | - | tig0035540:14080-14099 | Msa1454950:CDS | 50.0% |
| !! | GCTTTGGGAAGTGGAAGGAA+AGG | - | tig0035540:14085-14104 | Msa1454950:CDS | 50.0% |
| GGGAAGTGGAAGGAAAGGTT+TGG | - | tig0035540:14090-14109 | Msa1454950:CDS | 50.0% | |
| ! | TGGTGCTAATCCTTCTGCTG+AGG | - | tig0035540:14263-14282 | Msa1454950:intron | 50.0% |
| GGTGCTAATCCTTCTGCTGA+GGG | - | tig0035540:14264-14283 | Msa1454950:intron | 50.0% | |
| CTCTGACTCATTCCCCTACA+AGG | - | tig0035540:14046-14065 | Msa1454950:CDS | 50.0% | |
| !! | GGAATGCTTTGGGAAGTGGA+AGG | - | tig0035540:14080-14099 | Msa1454950:CDS | 50.0% |
| !! | GCTTTGGGAAGTGGAAGGAA+AGG | - | tig0035540:14085-14104 | Msa1454950:CDS | 50.0% |
| GGGAAGTGGAAGGAAAGGTT+TGG | - | tig0035540:14090-14109 | Msa1454950:CDS | 50.0% | |
| ! | TGGTGCTAATCCTTCTGCTG+AGG | - | tig0035540:14263-14282 | Msa1454950:intron | 50.0% |
| GGTGCTAATCCTTCTGCTGA+GGG | - | tig0035540:14264-14283 | Msa1454950:intron | 50.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | - | tig0035540:14230-14249 | Msa1454950:intron | 55.0% |
| GCTAATCCTTCTGCTGAGGG+TGG | - | tig0035540:14267-14286 | Msa1454950:intron | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | - | tig0035540:14633-14652 | Msa1454950:intron | 55.0% |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | - | tig0035540:14230-14249 | Msa1454950:intron | 55.0% |
| GCTAATCCTTCTGCTGAGGG+TGG | - | tig0035540:14267-14286 | Msa1454950:intron | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | - | tig0035540:14633-14652 | Msa1454950:intron | 55.0% |
| TCGTCTCCACCCTCAGCAGA+AGG | + | tig0035540:14276-14295 | None:intergenic | 60.0% | |
| TTCTGCTGAGGGTGGAGACG+AGG | - | tig0035540:14275-14294 | Msa1454950:intron | 60.0% | |
| GAGGGTGGAGACGAGGATGA+TGG | - | tig0035540:14282-14301 | Msa1454950:intron | 60.0% | |
| TCGTCTCCACCCTCAGCAGA+AGG | + | tig0035540:14276-14295 | None:intergenic | 60.0% | |
| TTCTGCTGAGGGTGGAGACG+AGG | - | tig0035540:14275-14294 | Msa1454950:intron | 60.0% | |
| GAGGGTGGAGACGAGGATGA+TGG | - | tig0035540:14282-14301 | Msa1454950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035540 | gene | 13303 | 14844 | 13303 | ID=Msa1454950;Name=Msa1454950 |
| tig0035540 | mRNA | 13303 | 14844 | 13303 | ID=Msa1454950-mRNA-1;Parent=Msa1454950;Name=Msa1454950-mRNA-1;_AED=0.16;_eAED=0.16;_QI=67|1|1|1|1|1|4|101|168 |
| tig0035540 | exon | 13303 | 13521 | 13303 | ID=Msa1454950-mRNA-1:exon:20048;Parent=Msa1454950-mRNA-1 |
| tig0035540 | exon | 13630 | 13916 | 13630 | ID=Msa1454950-mRNA-1:exon:20047;Parent=Msa1454950-mRNA-1 |
| tig0035540 | exon | 14041 | 14114 | 14041 | ID=Msa1454950-mRNA-1:exon:20046;Parent=Msa1454950-mRNA-1 |
| tig0035540 | exon | 14750 | 14844 | 14750 | ID=Msa1454950-mRNA-1:exon:20045;Parent=Msa1454950-mRNA-1 |
| tig0035540 | five_prime_UTR | 14778 | 14844 | 14778 | ID=Msa1454950-mRNA-1:five_prime_utr;Parent=Msa1454950-mRNA-1 |
| tig0035540 | CDS | 14750 | 14777 | 14750 | ID=Msa1454950-mRNA-1:cds;Parent=Msa1454950-mRNA-1 |
| tig0035540 | CDS | 14041 | 14114 | 14041 | ID=Msa1454950-mRNA-1:cds;Parent=Msa1454950-mRNA-1 |
| tig0035540 | CDS | 13630 | 13916 | 13630 | ID=Msa1454950-mRNA-1:cds;Parent=Msa1454950-mRNA-1 |
| tig0035540 | CDS | 13404 | 13521 | 13404 | ID=Msa1454950-mRNA-1:cds;Parent=Msa1454950-mRNA-1 |
| tig0035540 | three_prime_UTR | 13303 | 13403 | 13303 | ID=Msa1454950-mRNA-1:three_prime_utr;Parent=Msa1454950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
