AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568660 MtrunA17_Chr8g0383571 97.254 437 12 0 1 437 4 440 0.0 866
Msa0568660 MtrunA17_Chr8g0383531 96.568 437 15 0 1 437 1 437 0.0 864
Msa0568660 MtrunA17_Chr5g0431161 47.253 91 48 0 98 188 35 125 1.42e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568660 AT5G09900.2 80.460 435 84 1 4 437 7 441 0.0 708
Msa0568660 AT5G09900.1 80.460 435 84 1 4 437 7 441 0.0 708
Msa0568660 AT5G64760.2 77.523 436 97 1 4 438 7 442 0.0 680
Msa0568660 AT5G64760.1 77.523 436 97 1 4 438 7 442 0.0 679
Msa0568660 AT5G64760.3 78.199 422 91 1 18 438 1 422 0.0 665
Msa0568660 AT5G09900.3 78.698 338 71 1 4 340 7 344 0.0 533

Find 147 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCATAGTTCATGATTT+TGG 0.116538 4_1:+70278473 Msa0568660:three_prime_UTR
CTCTAGTTTCTATACGTATT+TGG 0.157930 4_1:+70273500 Msa0568660:five_prime_UTR
TTATCTTTCTTGAGAGTATT+TGG 0.210165 4_1:-70275076 None:intergenic
GACCATATTATCACCTTCTT+TGG 0.222140 4_1:-70275144 None:intergenic
ACAGTAAGAAATTAGATTAA+AGG 0.237230 4_1:-70273295 None:intergenic
AAACCCGAAGGCCATGAATT+TGG 0.244287 4_1:+70278308 Msa0568660:CDS
TGAAATTTGCCGCTGCTATA+AGG 0.251024 4_1:+70276852 Msa0568660:CDS
GTTATTCTTCAATTTCATTA+TGG 0.255010 4_1:-70278282 None:intergenic
CGTATAGAAACTAGAGTTAT+AGG 0.277433 4_1:-70273493 None:intergenic
TTCTCCAAATTCATGGCCTT+CGG 0.293647 4_1:-70278312 None:intergenic
CGTTGCTATCCTTTGCTGTT+TGG 0.293818 4_1:-70277914 None:intergenic
TATCTTTCTTGAGAGTATTT+GGG 0.303298 4_1:-70275075 None:intergenic
GAGAGTACCGTGGTTTAGTT+TGG 0.307140 4_1:-70273848 None:intergenic
AGATCTCAATTTCCAGATTC+CGG 0.308582 4_1:-70273572 None:intergenic
CTTAAGCTGGCCGCGTCGTT+TGG 0.310516 4_1:-70274119 None:intergenic
TTTGACAATGAGATGGTCTT+TGG 0.310577 4_1:+70277327 Msa0568660:CDS
ACGCGGCGGCGGCCGGAATC+TGG 0.315767 4_1:+70273560 Msa0568660:five_prime_UTR
AGGATAACATACTGGAAGTT+TGG 0.319003 4_1:-70277141 None:intergenic
TCATCCAATGGACAGCTCTT+TGG 0.322854 4_1:+70277286 Msa0568660:CDS
AATCATGAACTATGATAAAC+AGG 0.324450 4_1:-70278469 None:intergenic
TCTTATCAGGTGGAAACTTT+TGG 0.328587 4_1:+70274869 Msa0568660:intron
ATGGACTGAAGTTGCCTTAC+GGG 0.331235 4_1:+70278202 Msa0568660:CDS
CATCCAATGGACAGCTCTTT+GGG 0.333432 4_1:+70277287 Msa0568660:CDS
CCCCTGTATTTCCTTTATCT+TGG 0.342383 4_1:-70274698 None:intergenic
ACCATATTATCACCTTCTTT+GGG 0.346638 4_1:-70275143 None:intergenic
ACCGCGGGTTGGTCTGGATT+GGG 0.349892 4_1:+70273717 Msa0568660:intron
GTGGTTAGAAACGGCTCTTT+AGG 0.354606 4_1:-70273619 None:intergenic
CAAGAAACTTGCCAAGATAA+AGG 0.359795 4_1:+70274687 Msa0568660:CDS
GGGCTCCTCAATATGTGATA+TGG 0.363610 4_1:+70278183 Msa0568660:CDS
GACTGAAATACAATTCGGTT+TGG 0.370549 4_1:-70273678 None:intergenic
TAATTTCTTACTGTTATTGT+TGG 0.374205 4_1:+70273304 Msa0568660:five_prime_UTR
TAGAGAGAAGTTACTTGAAA+AGG 0.387459 4_1:-70273795 None:intergenic
TCTCCAAATTCATGGCCTTC+GGG 0.391544 4_1:-70278311 None:intergenic
ATTCGACATAGATGCATCTA+AGG 0.393010 4_1:+70275109 Msa0568660:CDS
TAACTCGTGGGCAGCAAACT+TGG 0.397845 4_1:+70277944 Msa0568660:CDS
AATTTCTTACTGTTATTGTT+GGG 0.402264 4_1:+70273305 Msa0568660:five_prime_UTR
AGATCAGACGGCGAAATTGC+CGG 0.404288 4_1:+70274010 Msa0568660:CDS
TGCTGATATTCCATCTCTAC+TGG 0.412149 4_1:+70275178 Msa0568660:CDS
GCATCACCAAGTGACTTATC+AGG 0.416759 4_1:-70278525 None:intergenic
GTTTGTCGAGTCCGCGGGTC+AGG 0.423705 4_1:-70273645 None:intergenic
GCCCAAAGAAGGTGATAATA+TGG 0.427248 4_1:+70275142 Msa0568660:CDS
TCAATACGAGTTTCAACATC+TGG 0.427862 4_1:-70274489 None:intergenic
ACTGAAATACAATTCGGTTT+GGG 0.430493 4_1:-70273677 None:intergenic
TTCAAGATAATCATTGTTGT+GGG 0.433017 4_1:-70276833 None:intergenic
CAATATATTGCATAGCCTGC+TGG 0.433604 4_1:-70274458 None:intergenic
GCATCTATGTCGAATACTCT+TGG 0.433663 4_1:-70275101 None:intergenic
TGCCAAGATAAAGGAAATAC+AGG 0.434552 4_1:+70274696 Msa0568660:CDS
GGTTCATAAAGCAGCTTTGA+AGG 0.436788 4_1:+70278022 Msa0568660:CDS
TCCCTTGTTTGCAATGAAAC+TGG 0.443825 4_1:-70273375 None:intergenic
AGAGTACCGTGGTTTAGTTT+GGG 0.444939 4_1:-70273847 None:intergenic
GGACATGATCCTGGCGGTCT+AGG 0.445916 4_1:-70275049 None:intergenic
GTCGAGTCCGCGGGTCAGGC+AGG 0.450574 4_1:-70273641 None:intergenic
ACTATTACGAGCTAATGATT+AGG 0.458857 4_1:+70275213 Msa0568660:CDS
TTTCTATACGTATTTGGTGG+AGG 0.464196 4_1:+70273506 Msa0568660:five_prime_UTR
TCTGCTTTGAAGCCAAAGCC+TGG 0.465047 4_1:+70274065 Msa0568660:CDS
TTCTATACGTATTTGGTGGA+GGG 0.465601 4_1:+70273507 Msa0568660:five_prime_UTR
TTTCAAGATAATCATTGTTG+TGG 0.472189 4_1:-70276834 None:intergenic
GCTAACCACGCGGCGGCGGC+CGG 0.473862 4_1:+70273553 Msa0568660:five_prime_UTR
TATGGTTGTTACCAAGGCTC+TGG 0.483429 4_1:+70277854 Msa0568660:CDS
GGAGAAGATGCTTGATCTTG+TGG 0.492893 4_1:+70277965 Msa0568660:CDS
TAACGCTAACCACGCGGCGG+CGG 0.494885 4_1:+70273549 Msa0568660:five_prime_UTR
CATCTATGTCGAATACTCTT+GGG 0.496534 4_1:-70275100 None:intergenic
TGCAATGAAACTGGTGTCAT+AGG 0.496570 4_1:-70273366 None:intergenic
CAAGGTGGAATTTAAAAGAC+TGG 0.502902 4_1:-70277094 None:intergenic
TTTGGGCACGGACATGATCC+TGG 0.504121 4_1:-70275058 None:intergenic
TATGGACTGAAGTTGCCTTA+CGG 0.506085 4_1:+70278201 Msa0568660:CDS
AAACAGAGAGATCTCTGAAT+CGG 0.506952 4_1:-70273822 None:intergenic
AATCTTTGCAACCAGAGCCT+TGG 0.507062 4_1:-70277865 None:intergenic
GCAAAGATTGACAGACCAAT+GGG 0.508334 4_1:+70277879 Msa0568660:CDS
TCGACTCTGCCTAGACCGCC+AGG 0.509366 4_1:+70275040 Msa0568660:CDS
AATTCGGTTTGGGCGGATGT+CGG 0.511836 4_1:-70273667 None:intergenic
GTCAGGCAGGTGGTTAGAAA+CGG 0.511901 4_1:-70273628 None:intergenic
GTTTGGACAAAACGACAATC+TGG 0.512141 4_1:-70274102 None:intergenic
CAACTGGTACCTGCTTAAGC+TGG 0.513972 4_1:-70274132 None:intergenic
TGCTTCAACTCCAGTAGAGA+TGG 0.518855 4_1:-70275188 None:intergenic
TGTCGGTTTGTCGAGTCCGC+GGG 0.522339 4_1:-70273650 None:intergenic
CACCAGTTTCATTGCAAACA+AGG 0.525233 4_1:+70273373 Msa0568660:five_prime_UTR
TAGTTTCTATACGTATTTGG+TGG 0.526946 4_1:+70273503 Msa0568660:five_prime_UTR
TCTCCCAAAGAGCTGTCCAT+TGG 0.527502 4_1:-70277290 None:intergenic
TGTGACAGCGATGGTCCAGC+AGG 0.529317 4_1:+70274443 Msa0568660:CDS
ACATTGAACAGTGTATCTGC+TGG 0.532773 4_1:+70274522 Msa0568660:CDS
TGAGATTGAGAGAGCAAGGT+TGG 0.535070 4_1:+70274663 Msa0568660:CDS
TTGCATCAAATCAGCAGCCT+CGG 0.540212 4_1:-70274728 None:intergenic
CAAAGCTGCTTTATGAACCA+TGG 0.543033 4_1:-70278018 None:intergenic
AGTAGAGATGGAATATCAGC+AGG 0.547557 4_1:-70275176 None:intergenic
ACGACGCGGCCAGCTTAAGC+AGG 0.547759 4_1:+70274123 Msa0568660:CDS
TGAAATGTTGCTCACTGTGT+TGG 0.548481 4_1:+70278235 Msa0568660:CDS
GAGAAATTAGATTCAACTCA+AGG 0.549220 4_1:-70273398 None:intergenic
GAAGCTGAGAAGCATCTGTC+CGG 0.552717 4_1:+70277831 Msa0568660:CDS
CCTACAGGAATAAAATCAGC+AGG 0.555937 4_1:-70276907 None:intergenic
TGGAAACAGACTATTCCCAT+TGG 0.557174 4_1:-70277894 None:intergenic
TGCAAAGATTGACAGACCAA+TGG 0.572504 4_1:+70277878 Msa0568660:CDS
TGAGAAGCATCTGTCCGGTA+TGG 0.572589 4_1:+70277836 Msa0568660:CDS
ATCAGTCCTGATAAGTCACT+TGG 0.573455 4_1:+70278519 Msa0568660:three_prime_UTR
ATGTCGGTTTGTCGAGTCCG+CGG 0.574484 4_1:-70273651 None:intergenic
GAGGAAAATATGTTGGTGCT+TGG 0.574826 4_1:+70277044 Msa0568660:CDS
TATACGTATTTGGTGGAGGG+CGG 0.575125 4_1:+70273510 Msa0568660:five_prime_UTR
GAGTCCGCGGGTCAGGCAGG+TGG 0.576662 4_1:-70273638 None:intergenic
GTCCGGTATGGTTGTTACCA+AGG 0.577395 4_1:+70277848 Msa0568660:CDS
GCAACGATGTTCTTAACTCG+TGG 0.578239 4_1:+70277931 Msa0568660:CDS
ATCAAACTTGAAAAGTGAGA+AGG 0.580013 4_1:-70273251 None:intergenic
TTCAAATGAGCATCCCCGTA+AGG 0.584624 4_1:-70278216 None:intergenic
TTCTTGAGAGTATTTGGGCA+CGG 0.586277 4_1:-70275070 None:intergenic
GCCAAGATAAAGGAAATACA+GGG 0.586967 4_1:+70274697 Msa0568660:CDS
ACGTTGAGATTGAGAGAGCA+AGG 0.591447 4_1:+70274659 Msa0568660:CDS
AAGAATAACATTAAACCCGA+AGG 0.597208 4_1:+70278296 Msa0568660:CDS
TTTAAAAGACTGGACTGCAT+CGG 0.598019 4_1:-70277084 None:intergenic
CATTGAACAGTGTATCTGCT+GGG 0.598121 4_1:+70274523 Msa0568660:CDS
AGATCCTGAGGAAAATATGT+TGG 0.600984 4_1:+70277037 Msa0568660:intron
AGAATTACAGAGAAAACTCA+AGG 0.601478 4_1:-70273329 None:intergenic
AGATAGATTTCTATCCTCCA+AGG 0.603704 4_1:-70277112 None:intergenic
TTTGAAGCAGCTGGTCACCA+TGG 0.604172 4_1:+70277260 Msa0568660:CDS
AGCCTTGGTAACAACCATAC+CGG 0.606298 4_1:-70277850 None:intergenic
CAACGATGTTCTTAACTCGT+GGG 0.607448 4_1:+70277932 Msa0568660:CDS
CATATATTGCCTTATAGCAG+CGG 0.613022 4_1:-70276861 None:intergenic
GAGGGCGGCTGTGTTTGCAG+TGG 0.615002 4_1:+70273525 Msa0568660:five_prime_UTR
TCAGTCCATATCACATATTG+AGG 0.615157 4_1:-70278188 None:intergenic
ACCAGTTTCATTGCAAACAA+GGG 0.617739 4_1:+70273374 Msa0568660:five_prime_UTR
GAAATACAATTCGGTTTGGG+CGG 0.618526 4_1:-70273674 None:intergenic
AGGTGATAATATGGTCGAAG+AGG 0.618539 4_1:+70275151 Msa0568660:CDS
GAATGAGTTTGACAATGAGA+TGG 0.628221 4_1:+70277320 Msa0568660:CDS
TCACCATGGAAGTCATCCAA+TGG 0.630891 4_1:+70277274 Msa0568660:CDS
GAACAGTGTATCTGCTGGGA+AGG 0.631990 4_1:+70274527 Msa0568660:CDS
AGTCTGTTTCCAAACAGCAA+AGG 0.634017 4_1:+70277905 Msa0568660:CDS
CTGGACTGCATCGGTGAATG+TGG 0.634478 4_1:-70277075 None:intergenic
GAGTTGCAAGATATCGATTG+CGG 0.635622 4_1:-70274044 None:intergenic
AGATTCCGGCCGCCGCCGCG+TGG 0.635667 4_1:-70273558 None:intergenic
GTTCTTACATACAGATCCTG+AGG 0.637665 4_1:+70277025 Msa0568660:intron
TCAAATACACAAGGAAACCA+TGG 0.640379 4_1:+70278001 Msa0568660:CDS
CTAACCACCTGCCTGACCCG+CGG 0.641316 4_1:+70273634 Msa0568660:five_prime_UTR
GAGAAGCAGATGAGATCAGA+CGG 0.646168 4_1:+70273998 Msa0568660:CDS
TGATTTGATGCAAGAAATTG+CGG 0.655673 4_1:+70274738 Msa0568660:CDS
TGGACTGAAGTTGCCTTACG+GGG 0.655915 4_1:+70278203 Msa0568660:CDS
TGTTGCTCACTGTGTTGGTG+AGG 0.668735 4_1:+70278240 Msa0568660:CDS
CATGCAGGCTGTGACAGCGA+TGG 0.669127 4_1:+70274434 Msa0568660:intron
GAGCTGTCATCAAATACACA+AGG 0.670564 4_1:+70277992 Msa0568660:CDS
GTTTATCCCAAACTAAACCA+CGG 0.678922 4_1:+70273841 Msa0568660:five_prime_UTR
TAGATTTCTATCCTCCAAGG+TGG 0.684299 4_1:-70277109 None:intergenic
TGTCCATTGGATGACTTCCA+TGG 0.689019 4_1:-70277277 None:intergenic
ATCATGAACTATGATAAACA+GGG 0.720875 4_1:-70278468 None:intergenic
CCAAGATAAAGGAAATACAG+GGG 0.720940 4_1:+70274698 Msa0568660:CDS
GAAAATATTAGCAACCACAG+TGG 0.730711 4_1:-70278412 None:intergenic
AAGTTGAAATAAGAAGCTGA+CGG 0.731176 4_1:+70278366 Msa0568660:CDS
GGGCACGGACATGATCCTGG+CGG 0.747981 4_1:-70275055 None:intergenic
AGTGGTTAACGCTAACCACG+CGG 0.752970 4_1:+70273543 Msa0568660:five_prime_UTR
GGTTAACGCTAACCACGCGG+CGG 0.773116 4_1:+70273546 Msa0568660:five_prime_UTR
AGTTTGAAAAGAAGCCACTG+TGG 0.781527 4_1:+70278398 Msa0568660:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAAATAAAATAAGA+TGG - chr4_1:70277772-70277791 None:intergenic 10.0%
!!! TGCTTATTTTTTTTTTTTTT+TGG + chr4_1:70278545-70278564 Msa0568660:three_prime_UTR 10.0%
!!! GCTTATTTTTTTTTTTTTTT+GGG + chr4_1:70278546-70278565 Msa0568660:three_prime_UTR 10.0%
!! TAAAAAAATGTCTCTTAAAA+TGG - chr4_1:70274606-70274625 None:intergenic 15.0%
!!! ATATATCTTTTTTTCGTTTT+TGG + chr4_1:70274795-70274814 Msa0568660:intron 15.0%
!! GTTTGTATAAAATAAACTAA+AGG - chr4_1:70275332-70275351 None:intergenic 15.0%
!!! TTTGGTTTTTATATTCAAAT+AGG - chr4_1:70275439-70275458 None:intergenic 15.0%
!!! TAATTAACTGTTTTAATTCT+TGG + chr4_1:70275781-70275800 Msa0568660:intron 15.0%
!!! ATATTTTAACATGATTAGAA+AGG - chr4_1:70277183-70277202 None:intergenic 15.0%
!!! AAACATAAAAAAAAAGTGTA+AGG - chr4_1:70277423-70277442 None:intergenic 15.0%
!! CTGATCTTTAAATTTAAAAA+TGG - chr4_1:70278504-70278523 None:intergenic 15.0%
!! ACAGTAAGAAATTAGATTAA+AGG - chr4_1:70273298-70273317 None:intergenic 20.0%
!! TAATTTCTTACTGTTATTGT+TGG + chr4_1:70273304-70273323 Msa0568660:five_prime_UTR 20.0%
!! AATTTCTTACTGTTATTGTT+GGG + chr4_1:70273305-70273324 Msa0568660:five_prime_UTR 20.0%
!! TGAAAAGCAGTTATATTATA+GGG - chr4_1:70273917-70273936 None:intergenic 20.0%
!! TTGAAAAGCAGTTATATTAT+AGG - chr4_1:70273918-70273937 None:intergenic 20.0%
!!! CTAAAATCTTTTAAACCTAA+CGG - chr4_1:70274195-70274214 None:intergenic 20.0%
!!! TTTCTTTTTCGTTTAGATAT+TGG + chr4_1:70274225-70274244 Msa0568660:intron 20.0%
!! AATTGTTTGCTTAAAATGAT+TGG + chr4_1:70274249-70274268 Msa0568660:intron 20.0%
!!! TTAAAATGATTGGTTTGTTT+AGG + chr4_1:70274259-70274278 Msa0568660:intron 20.0%
!!! TAAAATGATTGGTTTGTTTA+GGG + chr4_1:70274260-70274279 Msa0568660:intron 20.0%
!! GATTAGTACAAATTATTGTT+TGG + chr4_1:70274826-70274845 Msa0568660:intron 20.0%
!! AAACTAAAATATAGAAAACC+AGG - chr4_1:70275383-70275402 None:intergenic 20.0%
!!! TTTAGTTTCATTAACTTTTG+AGG + chr4_1:70275395-70275414 Msa0568660:intron 20.0%
!!! GATTCTAAAATTAACAGTAT+AGG - chr4_1:70275479-70275498 None:intergenic 20.0%
!!! ATTTTAGAATCTGAAAGATA+AGG + chr4_1:70275488-70275507 Msa0568660:intron 20.0%
!! ACAGTTAATTAAAAACTTGT+TGG - chr4_1:70275772-70275791 None:intergenic 20.0%
!! CAATTTGATATTTAGTAACA+AGG - chr4_1:70275853-70275872 None:intergenic 20.0%
!!! TATTTATGGATTATTAGAGT+TGG + chr4_1:70275939-70275958 Msa0568660:intron 20.0%
!! TTTCAAAATAGTTAAGAACT+GGG - chr4_1:70276166-70276185 None:intergenic 20.0%
!! CTCGTTTATAAAATTCTAAA+TGG - chr4_1:70276258-70276277 None:intergenic 20.0%
!!! CATTTAGAATTTTATAAACG+AGG + chr4_1:70276256-70276275 Msa0568660:intron 20.0%
!!! ATTTTTTAGAACAGTATCAA+TGG - chr4_1:70276404-70276423 None:intergenic 20.0%
!! TACTATAAGATTCTGTTATA+CGG + chr4_1:70276964-70276983 Msa0568660:intron 20.0%
!! AAGGATGAAATATGAAAAAT+AGG - chr4_1:70277164-70277183 None:intergenic 20.0%
!!! AAAAAAAAGTGTAAGGAATT+CGG - chr4_1:70277416-70277435 None:intergenic 20.0%
!! CCATAAGAAAAAGTTATTAA+AGG - chr4_1:70277611-70277630 None:intergenic 20.0%
!!! CCTTTAATAACTTTTTCTTA+TGG + chr4_1:70277608-70277627 Msa0568660:intron 20.0%
!! GTTATTCTTCAATTTCATTA+TGG - chr4_1:70278285-70278304 None:intergenic 20.0%
!!! TTTATCATAGTTCATGATTT+TGG + chr4_1:70278473-70278492 Msa0568660:three_prime_UTR 20.0%
!!! TTATCATAGTTCATGATTTT+GGG + chr4_1:70278474-70278493 Msa0568660:three_prime_UTR 20.0%
!! ATATCGACTGAAATACAATT+CGG - chr4_1:70273686-70273705 None:intergenic 25.0%
! AATTGTATTTCAGTCGATAT+TGG + chr4_1:70273686-70273705 Msa0568660:intron 25.0%
! ATTGTATTTCAGTCGATATT+GGG + chr4_1:70273687-70273706 Msa0568660:intron 25.0%
!! CGTTAGGTTTAAAAGATTTT+AGG + chr4_1:70274193-70274212 Msa0568660:intron 25.0%
!!! GCTTTAAACTCTAAAATGAT+TGG + chr4_1:70274292-70274311 Msa0568660:intron 25.0%
! TTTGTATGATTGGTACAAAA+AGG + chr4_1:70274386-70274405 Msa0568660:intron 25.0%
!!! TCTTAAAATGGATTATGCTA+TGG - chr4_1:70274594-70274613 None:intergenic 25.0%
! TCTTCTATGTTAAATTGTGT+AGG + chr4_1:70275016-70275035 Msa0568660:intron 25.0%
!!! TATCTTTCTTGAGAGTATTT+GGG - chr4_1:70275078-70275097 None:intergenic 25.0%
!!! TTATCTTTCTTGAGAGTATT+TGG - chr4_1:70275079-70275098 None:intergenic 25.0%
! AAGAAATACTACAACTAAAC+AGG - chr4_1:70275256-70275275 None:intergenic 25.0%
!! CTCCTTTTTATCTATATCTA+CGG + chr4_1:70275661-70275680 Msa0568660:intron 25.0%
!! TCCTTTTTATCTATATCTAC+GGG + chr4_1:70275662-70275681 Msa0568660:intron 25.0%
!! TTTTCTATATTACGTAAGTG+CGG + chr4_1:70275714-70275733 Msa0568660:intron 25.0%
!!! TGTTTTAATTCTTGGTTTGA+TGG + chr4_1:70275789-70275808 Msa0568660:intron 25.0%
! AGAAGTAAGTGATTAAAATG+TGG - chr4_1:70276079-70276098 None:intergenic 25.0%
!! AACTTTGGAAATTTAGGAAT+CGG - chr4_1:70276104-70276123 None:intergenic 25.0%
!! ATGGATAACTTTGGAAATTT+AGG - chr4_1:70276110-70276129 None:intergenic 25.0%
! AATGAAAAGTAGAGATGAAA+TGG - chr4_1:70276129-70276148 None:intergenic 25.0%
! GTTTCAAAATAGTTAAGAAC+TGG - chr4_1:70276167-70276186 None:intergenic 25.0%
!! AAGTTCAAACTCGTTTTATA+TGG - chr4_1:70276323-70276342 None:intergenic 25.0%
! AGTAATGTAGAGTAAAGAAT+TGG + chr4_1:70276587-70276606 Msa0568660:intron 25.0%
! TTCAAGATAATCATTGTTGT+GGG - chr4_1:70276836-70276855 None:intergenic 25.0%
! TTTCAAGATAATCATTGTTG+TGG - chr4_1:70276837-70276856 None:intergenic 25.0%
! CTGTATGTAAGAACAATATT+CGG - chr4_1:70277019-70277038 None:intergenic 25.0%
! TGAAAAATAGGATAACATAC+TGG - chr4_1:70277152-70277171 None:intergenic 25.0%
! TACAACAAGAATATTCTGAA+AGG - chr4_1:70277487-70277506 None:intergenic 25.0%
!!! AATAACTTTTTCTTATGGTG+TGG + chr4_1:70277613-70277632 Msa0568660:intron 25.0%
!!! ATAACTTTTTCTTATGGTGT+GGG + chr4_1:70277614-70277633 Msa0568660:intron 25.0%
! TCAAAGAAAAACTATATCCT+TGG + chr4_1:70277647-70277666 Msa0568660:intron 25.0%
! TTATGCACGAGTAATTAATT+AGG - chr4_1:70277806-70277825 None:intergenic 25.0%
! AGATTCATAATGCTTATTTC+TGG + chr4_1:70278150-70278169 Msa0568660:intron 25.0%
! ATCATGAACTATGATAAACA+GGG - chr4_1:70278471-70278490 None:intergenic 25.0%
! AATCATGAACTATGATAAAC+AGG - chr4_1:70278472-70278491 None:intergenic 25.0%
!!! TTTTTTTTTTGGGTGTGAAT+TGG + chr4_1:70278556-70278575 Msa0568660:three_prime_UTR 25.0%
ATCAAACTTGAAAAGTGAGA+AGG - chr4_1:70273254-70273273 None:intergenic 30.0%
AGAATTACAGAGAAAACTCA+AGG - chr4_1:70273332-70273351 None:intergenic 30.0%
GAGAAATTAGATTCAACTCA+AGG - chr4_1:70273401-70273420 None:intergenic 30.0%
CGTATAGAAACTAGAGTTAT+AGG - chr4_1:70273496-70273515 None:intergenic 30.0%
! CTCTAGTTTCTATACGTATT+TGG + chr4_1:70273500-70273519 Msa0568660:five_prime_UTR 30.0%
TAGTTTCTATACGTATTTGG+TGG + chr4_1:70273503-70273522 Msa0568660:five_prime_UTR 30.0%
ACTGAAATACAATTCGGTTT+GGG - chr4_1:70273680-70273699 None:intergenic 30.0%
TGCACAAGTTAAGAAAAACT+CGG - chr4_1:70273752-70273771 None:intergenic 30.0%
TAGAGAGAAGTTACTTGAAA+AGG - chr4_1:70273798-70273817 None:intergenic 30.0%
!! CTTTTTCGTGTTAGGAATTA+GGG + chr4_1:70274166-70274185 Msa0568660:intron 30.0%
!!! CTGCATCTTTTTTGTATGAT+TGG + chr4_1:70274376-70274395 Msa0568660:intron 30.0%
GCTATTATATATATGCATGC+AGG + chr4_1:70274419-70274438 Msa0568660:intron 30.0%
GAGAAGATGATAAAACAGTA+TGG - chr4_1:70274572-70274591 None:intergenic 30.0%
TGATTTGATGCAAGAAATTG+CGG + chr4_1:70274738-70274757 Msa0568660:CDS 30.0%
! TGTTTGGTTTACTTATGTGA+TGG + chr4_1:70274842-70274861 Msa0568660:intron 30.0%
! GTTTGGTTTACTTATGTGAT+GGG + chr4_1:70274843-70274862 Msa0568660:intron 30.0%
! AATTTTCTCAGTTTTTGCCA+TGG - chr4_1:70274897-70274916 None:intergenic 30.0%
ACCATATTATCACCTTCTTT+GGG - chr4_1:70275146-70275165 None:intergenic 30.0%
ACTATTACGAGCTAATGATT+AGG + chr4_1:70275213-70275232 Msa0568660:CDS 30.0%
GTAGATACTCTAAATTATCC+TGG + chr4_1:70275362-70275381 Msa0568660:intron 30.0%
CGTAGATATAGATAAAAAGG+AGG - chr4_1:70275663-70275682 None:intergenic 30.0%
TCCCGTAGATATAGATAAAA+AGG - chr4_1:70275666-70275685 None:intergenic 30.0%
!! CTATGATTTGTTTCTATGCT+TGG + chr4_1:70275686-70275705 Msa0568660:intron 30.0%
! GCTAACTTGTACTGTATTTA+TGG + chr4_1:70275925-70275944 Msa0568660:intron 30.0%
! TTATGGATTATTAGAGTTGG+AGG + chr4_1:70275942-70275961 Msa0568660:intron 30.0%
AGAGATGAAATGGATAACTT+TGG - chr4_1:70276119-70276138 None:intergenic 30.0%
!! GAACTTTAGAATAAACTTGC+TGG + chr4_1:70276337-70276356 Msa0568660:intron 30.0%
AGTATCAATGGTAAAAGACA+AGG - chr4_1:70276392-70276411 None:intergenic 30.0%
AGCAGCATAAATATAAACGA+CGG - chr4_1:70276507-70276526 None:intergenic 30.0%
AGTCCTGTTTATTTGTGTTT+GGG + chr4_1:70276536-70276555 Msa0568660:intron 30.0%
!! CTACATATTTTTCTAGTACC+TGG + chr4_1:70276732-70276751 Msa0568660:intron 30.0%
AGTAAGAAATATCATGAACC+AGG - chr4_1:70276753-70276772 None:intergenic 30.0%
GCATAAGGAAAAAAAAAGTC+AGG - chr4_1:70276782-70276801 None:intergenic 30.0%
!!! GACTTTTTTTTTCCTTATGC+TGG + chr4_1:70276782-70276801 Msa0568660:intron 30.0%
! TGTTTAGAATTCCTTGTCAT+TGG + chr4_1:70277205-70277224 Msa0568660:intron 30.0%
! GTTTAGAATTCCTTGTCATT+GGG + chr4_1:70277206-70277225 Msa0568660:intron 30.0%
TAACAGAACAAAACCATAAC+TGG - chr4_1:70277583-70277602 None:intergenic 30.0%
AAATAAGATGGAAGACCAAT+AGG - chr4_1:70277760-70277779 None:intergenic 30.0%
TAATTACTCGTGCATAATTC+AGG + chr4_1:70277809-70277828 Msa0568660:intron 30.0%
! GTTTAGAGAGATTTTCTCAA+TGG + chr4_1:70278099-70278118 Msa0568660:intron 30.0%
AAGAATAACATTAAACCCGA+AGG + chr4_1:70278296-70278315 Msa0568660:CDS 30.0%
!!! CTTTTAGTTCTCCAAATTCA+TGG - chr4_1:70278322-70278341 None:intergenic 30.0%
AAGTTGAAATAAGAAGCTGA+CGG + chr4_1:70278366-70278385 Msa0568660:CDS 30.0%
ACCAGTTTCATTGCAAACAA+GGG + chr4_1:70273374-70273393 Msa0568660:five_prime_UTR 35.0%
! TTTCTATACGTATTTGGTGG+AGG + chr4_1:70273506-70273525 Msa0568660:five_prime_UTR 35.0%
! TTCTATACGTATTTGGTGGA+GGG + chr4_1:70273507-70273526 Msa0568660:five_prime_UTR 35.0%
AGATCTCAATTTCCAGATTC+CGG - chr4_1:70273575-70273594 None:intergenic 35.0%
GACTGAAATACAATTCGGTT+TGG - chr4_1:70273681-70273700 None:intergenic 35.0%
AAACAGAGAGATCTCTGAAT+CGG - chr4_1:70273825-70273844 None:intergenic 35.0%
GTTTATCCCAAACTAAACCA+CGG + chr4_1:70273841-70273860 Msa0568660:five_prime_UTR 35.0%
! TGCTTTTCAATTCGTTTTGC+AGG + chr4_1:70273928-70273947 Msa0568660:intron 35.0%
!! AAAAGGCATCAATTTGCAAC+TGG - chr4_1:70274151-70274170 None:intergenic 35.0%
!! ATTGATGCCTTTTTCGTGTT+AGG + chr4_1:70274158-70274177 Msa0568660:intron 35.0%
CCTAATTCCTAACACGAAAA+AGG - chr4_1:70274168-70274187 None:intergenic 35.0%
!! CCTTTTTCGTGTTAGGAATT+AGG + chr4_1:70274165-70274184 Msa0568660:intron 35.0%
! TCTAAAATGATTGGTGCAGT+TGG + chr4_1:70274301-70274320 Msa0568660:intron 35.0%
!! GGTACAAAAAGGTATTAACG+AGG + chr4_1:70274397-70274416 Msa0568660:intron 35.0%
TCAATACGAGTTTCAACATC+TGG - chr4_1:70274492-70274511 None:intergenic 35.0%
CAAGAAACTTGCCAAGATAA+AGG + chr4_1:70274687-70274706 Msa0568660:CDS 35.0%
TGCCAAGATAAAGGAAATAC+AGG + chr4_1:70274696-70274715 Msa0568660:CDS 35.0%
GCCAAGATAAAGGAAATACA+GGG + chr4_1:70274697-70274716 Msa0568660:CDS 35.0%
CCAAGATAAAGGAAATACAG+GGG + chr4_1:70274698-70274717 Msa0568660:CDS 35.0%
!! ATGTGATGGGTAATCTTATC+AGG + chr4_1:70274856-70274875 Msa0568660:intron 35.0%
! TCTTATCAGGTGGAAACTTT+TGG + chr4_1:70274869-70274888 Msa0568660:intron 35.0%
CATCTATGTCGAATACTCTT+GGG - chr4_1:70275103-70275122 None:intergenic 35.0%
ATTCGACATAGATGCATCTA+AGG + chr4_1:70275109-70275128 Msa0568660:CDS 35.0%
GAAAAGAAAAAGCCCAAAGA+AGG + chr4_1:70275131-70275150 Msa0568660:CDS 35.0%
GACCATATTATCACCTTCTT+TGG - chr4_1:70275147-70275166 None:intergenic 35.0%
! ACTAGTAGTTACAAGTACTG+TGG + chr4_1:70275285-70275304 Msa0568660:intron 35.0%
GACATTCATGCATCATTGTT+TGG - chr4_1:70275457-70275476 None:intergenic 35.0%
TAAAATTGCAGTCAGACAGA+CGG - chr4_1:70275528-70275547 None:intergenic 35.0%
ATTTGAGTAAACGCAAAGCA+AGG - chr4_1:70275592-70275611 None:intergenic 35.0%
TATATTACGTAAGTGCGGAT+TGG + chr4_1:70275719-70275738 Msa0568660:intron 35.0%
CCTAAGAAACTTGGATTGTT+AGG - chr4_1:70275903-70275922 None:intergenic 35.0%
CCTAACAATCCAAGTTTCTT+AGG + chr4_1:70275900-70275919 Msa0568660:intron 35.0%
AGTTAGCTACCTAAGAAACT+TGG - chr4_1:70275912-70275931 None:intergenic 35.0%
TCGTTATCCTTCCTAACATT+TGG + chr4_1:70276363-70276382 Msa0568660:intron 35.0%
AAGGAATCCAAATGTTAGGA+AGG - chr4_1:70276373-70276392 None:intergenic 35.0%
AGACAAGGAATCCAAATGTT+AGG - chr4_1:70276377-70276396 None:intergenic 35.0%
!! AAACGACGGTTGATAAGAAT+TGG - chr4_1:70276493-70276512 None:intergenic 35.0%
GAGTCCTGTTTATTTGTGTT+TGG + chr4_1:70276535-70276554 Msa0568660:intron 35.0%
CATCCCAAACACAAATAAAC+AGG - chr4_1:70276542-70276561 None:intergenic 35.0%
ACCCAAGTTTAGAAAGCTAT+GGG - chr4_1:70276643-70276662 None:intergenic 35.0%
AACCCAAGTTTAGAAAGCTA+TGG - chr4_1:70276644-70276663 None:intergenic 35.0%
! GGTTTTCTGTCTGTGATTTT+AGG + chr4_1:70276803-70276822 Msa0568660:intron 35.0%
CATATATTGCCTTATAGCAG+CGG - chr4_1:70276864-70276883 None:intergenic 35.0%
! ATCAGCAGGATTTTCTTTGA+TGG - chr4_1:70276896-70276915 None:intergenic 35.0%
AAAGAGAATAGAAAGCCTAC+AGG - chr4_1:70276925-70276944 None:intergenic 35.0%
AGATCCTGAGGAAAATATGT+TGG + chr4_1:70277037-70277056 Msa0568660:intron 35.0%
TTTAAAAGACTGGACTGCAT+CGG - chr4_1:70277087-70277106 None:intergenic 35.0%
CAAGGTGGAATTTAAAAGAC+TGG - chr4_1:70277097-70277116 None:intergenic 35.0%
! CAGTCTTTTAAATTCCACCT+TGG + chr4_1:70277095-70277114 Msa0568660:CDS 35.0%
! TCTTTTAAATTCCACCTTGG+AGG + chr4_1:70277098-70277117 Msa0568660:CDS 35.0%
AGATAGATTTCTATCCTCCA+AGG - chr4_1:70277115-70277134 None:intergenic 35.0%
AGGATAACATACTGGAAGTT+TGG - chr4_1:70277144-70277163 None:intergenic 35.0%
GAATGAGTTTGACAATGAGA+TGG + chr4_1:70277320-70277339 Msa0568660:CDS 35.0%
TTTGACAATGAGATGGTCTT+TGG + chr4_1:70277327-70277346 Msa0568660:CDS 35.0%
ACTATATCCTTGGAAAGTGA+AGG + chr4_1:70277657-70277676 Msa0568660:intron 35.0%
! CAACAACTATTTTCACATGC+AGG - chr4_1:70277723-70277742 None:intergenic 35.0%
GTAAACCTGTAACTACCTAT+TGG + chr4_1:70277742-70277761 Msa0568660:intron 35.0%
TCAAATACACAAGGAAACCA+TGG + chr4_1:70278001-70278020 Msa0568660:CDS 35.0%
! CTTTGAAGGTTTAAGAAGGT+AGG + chr4_1:70278036-70278055 Msa0568660:intron 35.0%
ACAGTGAGACAATTTGAGAA+AGG - chr4_1:70278076-70278095 None:intergenic 35.0%
!! TGCTTATTTCTGGTCATTTC+AGG + chr4_1:70278160-70278179 Msa0568660:intron 35.0%
!! GCTTATTTCTGGTCATTTCA+GGG + chr4_1:70278161-70278180 Msa0568660:intron 35.0%
!! CTTATTTCTGGTCATTTCAG+GGG + chr4_1:70278162-70278181 Msa0568660:intron 35.0%
!! TTATTTCTGGTCATTTCAGG+GGG + chr4_1:70278163-70278182 Msa0568660:intron 35.0%
TCAGTCCATATCACATATTG+AGG - chr4_1:70278191-70278210 None:intergenic 35.0%
GAAAATATTAGCAACCACAG+TGG - chr4_1:70278415-70278434 None:intergenic 35.0%
!! TGCAATGAAACTGGTGTCAT+AGG - chr4_1:70273369-70273388 None:intergenic 40.0%
CACCAGTTTCATTGCAAACA+AGG + chr4_1:70273373-70273392 Msa0568660:five_prime_UTR 40.0%
! TCCCTTGTTTGCAATGAAAC+TGG - chr4_1:70273378-70273397 None:intergenic 40.0%
!! GAAATACAATTCGGTTTGGG+CGG - chr4_1:70273677-70273696 None:intergenic 40.0%
!! AGAGTACCGTGGTTTAGTTT+GGG - chr4_1:70273850-70273869 None:intergenic 40.0%
!! ATCAGAAATAGAGAGTACCG+TGG - chr4_1:70273861-70273880 None:intergenic 40.0%
! ATTCGTTTTGCAGGCAAACA+TGG + chr4_1:70273937-70273956 Msa0568660:intron 40.0%
! GAGTTGCAAGATATCGATTG+CGG - chr4_1:70274047-70274066 None:intergenic 40.0%
! ATTTAGCGTTTTCCAGGCTT+TGG - chr4_1:70274080-70274099 None:intergenic 40.0%
GTTTGGACAAAACGACAATC+TGG - chr4_1:70274105-70274124 None:intergenic 40.0%
TAGGAATTAGGGTTTCCGTT+AGG + chr4_1:70274177-70274196 Msa0568660:intron 40.0%
! TGGACAGAGTTTAGGGTTTA+AGG + chr4_1:70274321-70274340 Msa0568660:intron 40.0%
CAATATATTGCATAGCCTGC+TGG - chr4_1:70274461-70274480 None:intergenic 40.0%
ACATTGAACAGTGTATCTGC+TGG + chr4_1:70274522-70274541 Msa0568660:CDS 40.0%
CATTGAACAGTGTATCTGCT+GGG + chr4_1:70274523-70274542 Msa0568660:CDS 40.0%
CCCCTGTATTTCCTTTATCT+TGG - chr4_1:70274701-70274720 None:intergenic 40.0%
! TGATGGGTAATCTTATCAGG+TGG + chr4_1:70274859-70274878 Msa0568660:intron 40.0%
!! TTCTTGAGAGTATTTGGGCA+CGG - chr4_1:70275073-70275092 None:intergenic 40.0%
GCATCTATGTCGAATACTCT+TGG - chr4_1:70275104-70275123 None:intergenic 40.0%
GCCCAAAGAAGGTGATAATA+TGG + chr4_1:70275142-70275161 Msa0568660:CDS 40.0%
AGGTGATAATATGGTCGAAG+AGG + chr4_1:70275151-70275170 Msa0568660:CDS 40.0%
AGTAGAGATGGAATATCAGC+AGG - chr4_1:70275179-70275198 None:intergenic 40.0%
TGCTGATATTCCATCTCTAC+TGG + chr4_1:70275178-70275197 Msa0568660:CDS 40.0%
! TGAGGATATGCTTTTGATGC+TGG + chr4_1:70275413-70275432 Msa0568660:intron 40.0%
TGGATTATTAGAGTTGGAGG+TGG + chr4_1:70275945-70275964 Msa0568660:intron 40.0%
AATACATCCTGCACTGTGAT+TGG + chr4_1:70276011-70276030 Msa0568660:intron 40.0%
AAAATGTCCAATCACAGTGC+AGG - chr4_1:70276021-70276040 None:intergenic 40.0%
! GCACTGTGATTGGACATTTT+TGG + chr4_1:70276021-70276040 Msa0568660:intron 40.0%
GAGTAAAGAATTGGTCACAG+TGG + chr4_1:70276596-70276615 Msa0568660:intron 40.0%
TCCCCATAGCTTTCTAAACT+TGG + chr4_1:70276638-70276657 Msa0568660:intron 40.0%
CCCAAGTTTAGAAAGCTATG+GGG - chr4_1:70276642-70276661 None:intergenic 40.0%
CCCCATAGCTTTCTAAACTT+GGG + chr4_1:70276639-70276658 Msa0568660:intron 40.0%
ACAGACAGAAAACCAGCATA+AGG - chr4_1:70276797-70276816 None:intergenic 40.0%
TGAAATTTGCCGCTGCTATA+AGG + chr4_1:70276852-70276871 Msa0568660:CDS 40.0%
! GCAGGATTTTCTTTGATGGA+CGG - chr4_1:70276892-70276911 None:intergenic 40.0%
CCTACAGGAATAAAATCAGC+AGG - chr4_1:70276910-70276929 None:intergenic 40.0%
!!! CCTGCTGATTTTATTCCTGT+AGG + chr4_1:70276907-70276926 Msa0568660:intron 40.0%
GTTCTTACATACAGATCCTG+AGG + chr4_1:70277025-70277044 Msa0568660:intron 40.0%
! AGCACCAACATATTTTCCTC+AGG - chr4_1:70277044-70277063 None:intergenic 40.0%
! GAGGAAAATATGTTGGTGCT+TGG + chr4_1:70277044-70277063 Msa0568660:CDS 40.0%
TAGATTTCTATCCTCCAAGG+TGG - chr4_1:70277112-70277131 None:intergenic 40.0%
CTTGGAAAGTGAAGGTAGTA+GGG + chr4_1:70277665-70277684 Msa0568660:intron 40.0%
TTGGAAAGTGAAGGTAGTAG+GGG + chr4_1:70277666-70277685 Msa0568660:intron 40.0%
GAAGACCAATAGGTAGTTAC+AGG - chr4_1:70277750-70277769 None:intergenic 40.0%
TGCAAAGATTGACAGACCAA+TGG + chr4_1:70277878-70277897 Msa0568660:CDS 40.0%
GCAAAGATTGACAGACCAAT+GGG + chr4_1:70277879-70277898 Msa0568660:CDS 40.0%
TGGAAACAGACTATTCCCAT+TGG - chr4_1:70277897-70277916 None:intergenic 40.0%
AGTCTGTTTCCAAACAGCAA+AGG + chr4_1:70277905-70277924 Msa0568660:CDS 40.0%
CAACGATGTTCTTAACTCGT+GGG + chr4_1:70277932-70277951 Msa0568660:CDS 40.0%
GAGCTGTCATCAAATACACA+AGG + chr4_1:70277992-70278011 Msa0568660:CDS 40.0%
! CAAAGCTGCTTTATGAACCA+TGG - chr4_1:70278021-70278040 None:intergenic 40.0%
! GGTTCATAAAGCAGCTTTGA+AGG + chr4_1:70278022-70278041 Msa0568660:CDS 40.0%
!! GCAGCTTTGAAGGTTTAAGA+AGG + chr4_1:70278032-70278051 Msa0568660:intron 40.0%
AAGAAGGTAGGTCCATATGT+CGG + chr4_1:70278048-70278067 Msa0568660:intron 40.0%
! TATGGACTGAAGTTGCCTTA+CGG + chr4_1:70278201-70278220 Msa0568660:CDS 40.0%
TGAAATGTTGCTCACTGTGT+TGG + chr4_1:70278235-70278254 Msa0568660:CDS 40.0%
TTCTCCAAATTCATGGCCTT+CGG - chr4_1:70278315-70278334 None:intergenic 40.0%
AGTTTGAAAAGAAGCCACTG+TGG + chr4_1:70278398-70278417 Msa0568660:three_prime_UTR 40.0%
ATCAGTCCTGATAAGTCACT+TGG + chr4_1:70278519-70278538 Msa0568660:three_prime_UTR 40.0%
! TATACGTATTTGGTGGAGGG+CGG + chr4_1:70273510-70273529 Msa0568660:five_prime_UTR 45.0%
GTGGTTAGAAACGGCTCTTT+AGG - chr4_1:70273622-70273641 None:intergenic 45.0%
!! GAGAGTACCGTGGTTTAGTT+TGG - chr4_1:70273851-70273870 None:intergenic 45.0%
TTCTGATCCCCTTTCTCGAT+CGG + chr4_1:70273874-70273893 Msa0568660:intron 45.0%
GAGAAGCAGATGAGATCAGA+CGG + chr4_1:70273998-70274017 Msa0568660:CDS 45.0%
! CTGGTCATTTAGCGTTTTCC+AGG - chr4_1:70274086-70274105 None:intergenic 45.0%
GTGCAGTTGGACAGAGTTTA+GGG + chr4_1:70274314-70274333 Msa0568660:intron 45.0%
ACGTTGAGATTGAGAGAGCA+AGG + chr4_1:70274659-70274678 Msa0568660:CDS 45.0%
TGAGATTGAGAGAGCAAGGT+TGG + chr4_1:70274663-70274682 Msa0568660:CDS 45.0%
TTGCATCAAATCAGCAGCCT+CGG - chr4_1:70274731-70274750 None:intergenic 45.0%
TGCTTCAACTCCAGTAGAGA+TGG - chr4_1:70275191-70275210 None:intergenic 45.0%
! CGGATTGGAGTACATGTTTG+TGG + chr4_1:70275734-70275753 Msa0568660:intron 45.0%
TGGTCACAGTGGAGTATATG+TGG + chr4_1:70276607-70276626 Msa0568660:intron 45.0%
CGATTTCACAGTCAGTGAAG+TGG - chr4_1:70276679-70276698 None:intergenic 45.0%
!!! TAGGCTACTTTTGAAGCAGC+TGG + chr4_1:70277251-70277270 Msa0568660:intron 45.0%
TCACCATGGAAGTCATCCAA+TGG + chr4_1:70277274-70277293 Msa0568660:CDS 45.0%
TGTCCATTGGATGACTTCCA+TGG - chr4_1:70277280-70277299 None:intergenic 45.0%
TCATCCAATGGACAGCTCTT+TGG + chr4_1:70277286-70277305 Msa0568660:CDS 45.0%
CATCCAATGGACAGCTCTTT+GGG + chr4_1:70277287-70277306 Msa0568660:CDS 45.0%
AACTGGCATTACACACCTCT+AGG - chr4_1:70277566-70277585 None:intergenic 45.0%
GAGGTGTGTAATGCCAGTTA+TGG + chr4_1:70277567-70277586 Msa0568660:intron 45.0%
CCTACTACCTTCACTTTCCA+AGG - chr4_1:70277667-70277686 None:intergenic 45.0%
CCTTGGAAAGTGAAGGTAGT+AGG + chr4_1:70277664-70277683 Msa0568660:intron 45.0%
TGAAGGTAGTAGGGGAATTG+TGG + chr4_1:70277674-70277693 Msa0568660:intron 45.0%
! AGCCTTGGTAACAACCATAC+CGG - chr4_1:70277853-70277872 None:intergenic 45.0%
TATGGTTGTTACCAAGGCTC+TGG + chr4_1:70277854-70277873 Msa0568660:CDS 45.0%
AATCTTTGCAACCAGAGCCT+TGG - chr4_1:70277868-70277887 None:intergenic 45.0%
!! CGTTGCTATCCTTTGCTGTT+TGG - chr4_1:70277917-70277936 None:intergenic 45.0%
GCAACGATGTTCTTAACTCG+TGG + chr4_1:70277931-70277950 Msa0568660:CDS 45.0%
GGAGAAGATGCTTGATCTTG+TGG + chr4_1:70277965-70277984 Msa0568660:CDS 45.0%
TTGAGAAAGGAGCCGACATA+TGG - chr4_1:70278063-70278082 None:intergenic 45.0%
GGGCTCCTCAATATGTGATA+TGG + chr4_1:70278183-70278202 Msa0568660:CDS 45.0%
! ATGGACTGAAGTTGCCTTAC+GGG + chr4_1:70278202-70278221 Msa0568660:CDS 45.0%
TTCAAATGAGCATCCCCGTA+AGG - chr4_1:70278219-70278238 None:intergenic 45.0%
AAACCCGAAGGCCATGAATT+TGG + chr4_1:70278308-70278327 Msa0568660:CDS 45.0%
TCTCCAAATTCATGGCCTTC+GGG - chr4_1:70278314-70278333 None:intergenic 45.0%
GCATCACCAAGTGACTTATC+AGG - chr4_1:70278528-70278547 None:intergenic 45.0%
!!! TTATTTTATTTGTTTTTTAA+TGG + chr4_1:70277774-70277793 Msa0568660:intron 5.0%
!!! TATTTTATTTGTTTTTTAAT+GGG + chr4_1:70277775-70277794 Msa0568660:intron 5.0%
AGTGGTTAACGCTAACCACG+CGG + chr4_1:70273543-70273562 Msa0568660:five_prime_UTR 50.0%
GTCAGGCAGGTGGTTAGAAA+CGG - chr4_1:70273631-70273650 None:intergenic 50.0%
!! AATTCGGTTTGGGCGGATGT+CGG - chr4_1:70273670-70273689 None:intergenic 50.0%
! ACATGCACCGATCGAGAAAG+GGG - chr4_1:70273884-70273903 None:intergenic 50.0%
! CACATGCACCGATCGAGAAA+GGG - chr4_1:70273885-70273904 None:intergenic 50.0%
! ACACATGCACCGATCGAGAA+AGG - chr4_1:70273886-70273905 None:intergenic 50.0%
AGATCAGACGGCGAAATTGC+CGG + chr4_1:70274010-70274029 Msa0568660:CDS 50.0%
! GATTGCGGCTTTTCTTGTGC+CGG - chr4_1:70274032-70274051 None:intergenic 50.0%
!! TCTGCTTTGAAGCCAAAGCC+TGG + chr4_1:70274065-70274084 Msa0568660:CDS 50.0%
!! GTCGTTTTGTCCAAACGACG+CGG + chr4_1:70274109-70274128 Msa0568660:CDS 50.0%
CAACTGGTACCTGCTTAAGC+TGG - chr4_1:70274135-70274154 None:intergenic 50.0%
GGTGCAGTTGGACAGAGTTT+AGG + chr4_1:70274313-70274332 Msa0568660:intron 50.0%
GAACAGTGTATCTGCTGGGA+AGG + chr4_1:70274527-70274546 Msa0568660:CDS 50.0%
! AATACAGGGGCTTTTAGCCG+AGG + chr4_1:70274711-70274730 Msa0568660:CDS 50.0%
!!! GGTGGAAACTTTTGGTGCCA+TGG + chr4_1:70274877-70274896 Msa0568660:intron 50.0%
! TTTGAAGCAGCTGGTCACCA+TGG + chr4_1:70277260-70277279 Msa0568660:CDS 50.0%
TCTCCCAAAGAGCTGTCCAT+TGG - chr4_1:70277293-70277312 None:intergenic 50.0%
! GCTTTTGTGTCTCAGCCTAG+AGG + chr4_1:70277548-70277567 Msa0568660:CDS 50.0%
!! GAAGCTGAGAAGCATCTGTC+CGG + chr4_1:70277831-70277850 Msa0568660:CDS 50.0%
!! TGAGAAGCATCTGTCCGGTA+TGG + chr4_1:70277836-70277855 Msa0568660:CDS 50.0%
GTCCGGTATGGTTGTTACCA+AGG + chr4_1:70277848-70277867 Msa0568660:CDS 50.0%
TAACTCGTGGGCAGCAAACT+TGG + chr4_1:70277944-70277963 Msa0568660:CDS 50.0%
TGGACTGAAGTTGCCTTACG+GGG + chr4_1:70278203-70278222 Msa0568660:CDS 50.0%
! TGTTGCTCACTGTGTTGGTG+AGG + chr4_1:70278240-70278259 Msa0568660:CDS 50.0%
!! ATGTCGGTTTGTCGAGTCCG+CGG - chr4_1:70273654-70273673 None:intergenic 55.0%
GATATTGGGCCATAGCACCG+CGG + chr4_1:70273701-70273720 Msa0568660:intron 55.0%
ATATTGGGCCATAGCACCGC+GGG + chr4_1:70273702-70273721 Msa0568660:intron 55.0%
TTTGGGCACGGACATGATCC+TGG - chr4_1:70275061-70275080 None:intergenic 55.0%
! CTGGACTGCATCGGTGAATG+TGG - chr4_1:70277078-70277097 None:intergenic 55.0%
GGTTAACGCTAACCACGCGG+CGG + chr4_1:70273546-70273565 Msa0568660:five_prime_UTR 60.0%
!! TGTCGGTTTGTCGAGTCCGC+GGG - chr4_1:70273653-70273672 None:intergenic 60.0%
!! ACCGCGGGTTGGTCTGGATT+GGG + chr4_1:70273717-70273736 Msa0568660:intron 60.0%
CTTAAGCTGGCCGCGTCGTT+TGG - chr4_1:70274122-70274141 None:intergenic 60.0%
CATGCAGGCTGTGACAGCGA+TGG + chr4_1:70274434-70274453 Msa0568660:intron 60.0%
TGTGACAGCGATGGTCCAGC+AGG + chr4_1:70274443-70274462 Msa0568660:CDS 60.0%
GGACATGATCCTGGCGGTCT+AGG - chr4_1:70275052-70275071 None:intergenic 60.0%
GAGGGCGGCTGTGTTTGCAG+TGG + chr4_1:70273525-70273544 Msa0568660:five_prime_UTR 65.0%
TAACGCTAACCACGCGGCGG+CGG + chr4_1:70273549-70273568 Msa0568660:five_prime_UTR 65.0%
CTAACCACCTGCCTGACCCG+CGG + chr4_1:70273634-70273653 Msa0568660:five_prime_UTR 65.0%
GTTTGTCGAGTCCGCGGGTC+AGG - chr4_1:70273648-70273667 None:intergenic 65.0%
! CAGACCAACCCGCGGTGCTA+TGG - chr4_1:70273713-70273732 None:intergenic 65.0%
!! CATAGCACCGCGGGTTGGTC+TGG + chr4_1:70273711-70273730 Msa0568660:intron 65.0%
!! CACCGCGGGTTGGTCTGGAT+TGG + chr4_1:70273716-70273735 Msa0568660:intron 65.0%
GCCCAATCCAGACCAACCCG+CGG - chr4_1:70273721-70273740 None:intergenic 65.0%
ACGACGCGGCCAGCTTAAGC+AGG + chr4_1:70274123-70274142 Msa0568660:CDS 65.0%
TCGACTCTGCCTAGACCGCC+AGG + chr4_1:70275040-70275059 Msa0568660:CDS 65.0%
GGGCACGGACATGATCCTGG+CGG - chr4_1:70275058-70275077 None:intergenic 65.0%
TGGGCCATAGCACCGCGGGT+TGG + chr4_1:70273706-70273725 Msa0568660:intron 70.0%
GAGTCCGCGGGTCAGGCAGG+TGG - chr4_1:70273641-70273660 None:intergenic 75.0%
GTCGAGTCCGCGGGTCAGGC+AGG - chr4_1:70273644-70273663 None:intergenic 75.0%
! GCTAACCACGCGGCGGCGGC+CGG + chr4_1:70273553-70273572 Msa0568660:five_prime_UTR 80.0%
! AGATTCCGGCCGCCGCCGCG+TGG - chr4_1:70273561-70273580 None:intergenic 80.0%
! ACGCGGCGGCGGCCGGAATC+TGG + chr4_1:70273560-70273579 Msa0568660:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70273238 70278604 70273238 ID=Msa0568660;Name=Msa0568660
chr4_1 mRNA 70273238 70278604 70273238 ID=Msa0568660-mRNA-1;Parent=Msa0568660;Name=Msa0568660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=589|0.91|0.92|1|0.83|0.84|13|219|504
chr4_1 exon 70273238 70273689 70273238 ID=Msa0568660-mRNA-1:exon:23631;Parent=Msa0568660-mRNA-1
chr4_1 exon 70273732 70273862 70273732 ID=Msa0568660-mRNA-1:exon:23632;Parent=Msa0568660-mRNA-1
chr4_1 exon 70273950 70274144 70273950 ID=Msa0568660-mRNA-1:exon:23633;Parent=Msa0568660-mRNA-1
chr4_1 exon 70274441 70274548 70274441 ID=Msa0568660-mRNA-1:exon:23634;Parent=Msa0568660-mRNA-1
chr4_1 exon 70274655 70274759 70274655 ID=Msa0568660-mRNA-1:exon:23635;Parent=Msa0568660-mRNA-1
chr4_1 exon 70274878 70274934 70274878 ID=Msa0568660-mRNA-1:exon:23636;Parent=Msa0568660-mRNA-1
chr4_1 exon 70275038 70275234 70275038 ID=Msa0568660-mRNA-1:exon:23637;Parent=Msa0568660-mRNA-1
chr4_1 exon 70276825 70276924 70276825 ID=Msa0568660-mRNA-1:exon:23638;Parent=Msa0568660-mRNA-1
chr4_1 exon 70277039 70277151 70277039 ID=Msa0568660-mRNA-1:exon:23639;Parent=Msa0568660-mRNA-1
chr4_1 exon 70277254 70277404 70277254 ID=Msa0568660-mRNA-1:exon:23640;Parent=Msa0568660-mRNA-1
chr4_1 exon 70277492 70277569 70277492 ID=Msa0568660-mRNA-1:exon:23641;Parent=Msa0568660-mRNA-1
chr4_1 exon 70277831 70278043 70277831 ID=Msa0568660-mRNA-1:exon:23642;Parent=Msa0568660-mRNA-1
chr4_1 exon 70278182 70278604 70278182 ID=Msa0568660-mRNA-1:exon:23643;Parent=Msa0568660-mRNA-1
chr4_1 five_prime_UTR 70273238 70273689 70273238 ID=Msa0568660-mRNA-1:five_prime_utr;Parent=Msa0568660-mRNA-1
chr4_1 five_prime_UTR 70273732 70273862 70273732 ID=Msa0568660-mRNA-1:five_prime_utr;Parent=Msa0568660-mRNA-1
chr4_1 five_prime_UTR 70273950 70273955 70273950 ID=Msa0568660-mRNA-1:five_prime_utr;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70273956 70274144 70273956 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70274441 70274548 70274441 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70274655 70274759 70274655 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70274878 70274934 70274878 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70275038 70275234 70275038 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70276825 70276924 70276825 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70277039 70277151 70277039 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70277254 70277404 70277254 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70277492 70277569 70277492 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70277831 70278043 70277831 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 CDS 70278182 70278385 70278182 ID=Msa0568660-mRNA-1:cds;Parent=Msa0568660-mRNA-1
chr4_1 three_prime_UTR 70278386 70278604 70278386 ID=Msa0568660-mRNA-1:three_prime_utr;Parent=Msa0568660-mRNA-1
Gene Sequence

>Msa0568660

ATGGAGAATCTAGATGCAAAGATAGAGCAACTTCTCAACGTCGAGAAGCAGATGAGATCAGACGGCGAAATTGCCGGCACAAGAAAAGCCGCAATCGATATCTTGCAACTCTGCTTTGAAGCCAAAGCCTGGAAAACGCTAAATGACCAGATTGTCGTTTTGTCCAAACGACGCGGCCAGCTTAAGCAGGCTGTGACAGCGATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCAGATGTTGAAACTCGTATTGAACTTATCAAGACATTGAACAGTGTATCTGCTGGGAAGATATACGTTGAGATTGAGAGAGCAAGGTTGGTCAAGAAACTTGCCAAGATAAAGGAAATACAGGGGCTTTTAGCCGAGGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAAATTGCATTCATTCTTGAACAAGTTCGACTCTGCCTAGACCGCCAGGATCATGTCCGTGCCCAAATACTCTCAAGAAAGATAAGCCCAAGAGTATTCGACATAGATGCATCTAAGGAAAAGAAAAAGCCCAAAGAAGGTGATAATATGGTCGAAGAGGCTCCTGCTGATATTCCATCTCTACTGGAGTTGAAGCAGAACTATTACGAGCTAATGATTAGGTATTATTCCCACAACAATGATTATCTTGAAATTTGCCGCTGCTATAAGGCAATATATGAGATTCCGTCCATCAAAGAAAATCCTGCTGATTTTATTCCTATCCTGAGGAAAATATGTTGGTGCTTGGTTCTAGCACCACATTCACCGATGCAGTCCAGTCTTTTAAATTCCACCTTGGAGGATAGAAATCTATCTGAGATTCCAAACTTCCAGCTACTTTTGAAGCAGCTGGTCACCATGGAAGTCATCCAATGGACAGCTCTTTGGGAGACATATAAGAATGAGTTTGACAATGAGATGGTCTTTGGAAAGTTTTTGAGTGAAAAAGCAGCTGAAGATCTGAAACAGAGAATTATTGAACATAATATTCTTGTTGTATCAAAATACTATGCAGTGATTACTTTGAAGAGACTTGCACAGCTTTTGTGTCTCAGCCTAGAGGAAGCTGAGAAGCATCTGTCCGGTATGGTTGTTACCAAGGCTCTGGTTGCAAAGATTGACAGACCAATGGGAATAGTCTGTTTCCAAACAGCAAAGGATAGCAACGATGTTCTTAACTCGTGGGCAGCAAACTTGGAGAAGATGCTTGATCTTGTGGAGAAGAGCTGTCATCAAATACACAAGGAAACCATGGTTCATAAAGCAGCTTTGAAGGGGGCTCCTCAATATGTGATATGGACTGAAGTTGCCTTACGGGGATGCTCATTTGAAATGTTGCTCACTGTGTTGGTGAGGAATAACTTTAAACAATTGTCCATAATGAAATTGAAGAATAACATTAAACCCGAAGGCCATGAATTTGGAGAACTAAAAGAAGAATCAAAATTAGTAGTTGTAGAAGTTGAAATAAGAAGCTGA

Protein sequence

>Msa0568660

MENLDAKIEQLLNVEKQMRSDGEIAGTRKAAIDILQLCFEAKAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDVETRIELIKTLNSVSAGKIYVEIERARLVKKLAKIKEIQGLLAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDHVRAQILSRKISPRVFDIDASKEKKKPKEGDNMVEEAPADIPSLLELKQNYYELMIRYYSHNNDYLEICRCYKAIYEIPSIKENPADFIPILRKICWCLVLAPHSPMQSSLLNSTLEDRNLSEIPNFQLLLKQLVTMEVIQWTALWETYKNEFDNEMVFGKFLSEKAAEDLKQRIIEHNILVVSKYYAVITLKRLAQLLCLSLEEAEKHLSGMVVTKALVAKIDRPMGIVCFQTAKDSNDVLNSWAANLEKMLDLVEKSCHQIHKETMVHKAALKGAPQYVIWTEVALRGCSFEMLLTVLVRNNFKQLSIMKLKNNIKPEGHEFGELKEESKLVVVEVEIRS*