Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705320 | XP_003630160.2 | 97.489 | 438 | 11 | 0 | 1 | 438 | 4 | 441 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705320 | sp|Q9FIB6|PS12A_ARATH | 80.460 | 435 | 84 | 1 | 4 | 437 | 7 | 441 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705320 | B7FLC5 | 97.489 | 438 | 11 | 0 | 1 | 438 | 4 | 441 | 0.0 | 870 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0681250 | Msa0705320 | 0.810885 | 9.227126e-51 | -8.615850e-47 |
| Msa0705320 | Msa0722630 | 0.805025 | 1.628823e-49 | -8.615850e-47 |
| Msa0705320 | Msa0832340 | 0.800899 | 1.160886e-48 | -8.615850e-47 |
| Msa0705320 | Msa1358500 | 0.835690 | 1.448910e-56 | -8.615850e-47 |
| Msa0568660 | Msa0705320 | 0.861809 | 7.904588e-64 | -8.615850e-47 |
| Msa0570820 | Msa0705320 | 0.803703 | 3.072255e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705320 | MtrunA17_Chr8g0383571 | 97.489 | 438 | 11 | 0 | 1 | 438 | 4 | 441 | 0.0 | 870 |
| Msa0705320 | MtrunA17_Chr8g0383531 | 96.575 | 438 | 15 | 0 | 1 | 438 | 1 | 438 | 0.0 | 866 |
| Msa0705320 | MtrunA17_Chr5g0431161 | 47.253 | 91 | 48 | 0 | 98 | 188 | 35 | 125 | 1.19e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705320 | AT5G09900.2 | 80.460 | 435 | 84 | 1 | 4 | 437 | 7 | 441 | 0.0 | 709 |
| Msa0705320 | AT5G09900.1 | 80.460 | 435 | 84 | 1 | 4 | 437 | 7 | 441 | 0.0 | 709 |
| Msa0705320 | AT5G64760.1 | 77.701 | 435 | 96 | 1 | 4 | 437 | 7 | 441 | 0.0 | 680 |
| Msa0705320 | AT5G64760.2 | 77.701 | 435 | 96 | 1 | 4 | 437 | 7 | 441 | 0.0 | 680 |
| Msa0705320 | AT5G64760.3 | 78.385 | 421 | 90 | 1 | 18 | 437 | 1 | 421 | 0.0 | 665 |
| Msa0705320 | AT5G09900.3 | 78.402 | 338 | 72 | 1 | 4 | 340 | 7 | 344 | 0.0 | 533 |
Find 95 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCTTCAAAGCTGCTTTA+TGG | 0.134030 | 4_4:+77907496 | None:intergenic |
| TTATCTTTCTTGAGAGTATT+TGG | 0.210165 | 4_4:+77910598 | None:intergenic |
| TTGAAAAGCAATTATATTAT+AGG | 0.216741 | 4_4:+77911761 | None:intergenic |
| GACCATATTATCACCTTCTT+TGG | 0.222140 | 4_4:+77910530 | None:intergenic |
| CGTTGCTATCCTTTGCTGTT+TGG | 0.293818 | 4_4:+77907607 | None:intergenic |
| GAGAATACCATGGTTGAGTT+TGG | 0.294287 | 4_4:+77911828 | None:intergenic |
| TGAAAAGCAATTATATTATA+GGG | 0.301242 | 4_4:+77911762 | None:intergenic |
| TATCTTTCTTGAGAGTATTT+GGG | 0.303298 | 4_4:+77910599 | None:intergenic |
| CTTAAGCTGGCCGCGTCGTT+TGG | 0.310516 | 4_4:+77911557 | None:intergenic |
| TTTGACAATGAGATGGTCTT+TGG | 0.310577 | 4_4:-77908193 | Msa0705320:CDS |
| AGGATAACATACTGGAAGTT+TGG | 0.319003 | 4_4:+77908379 | None:intergenic |
| TCATCCAATGGACAGCTCTT+TGG | 0.322854 | 4_4:-77908234 | Msa0705320:CDS |
| TCTTATCAGGTGGAAACTTT+TGG | 0.328587 | 4_4:-77910805 | Msa0705320:intron |
| CATCCAATGGACAGCTCTTT+GGG | 0.333432 | 4_4:-77908233 | Msa0705320:CDS |
| TGAGATTTGTCGCTGCTATA+AGG | 0.335886 | 4_4:-77908667 | Msa0705320:CDS |
| CCCCTGTATTTCCTTTATCT+TGG | 0.342383 | 4_4:+77910974 | None:intergenic |
| ACCATATTATCACCTTCTTT+GGG | 0.346638 | 4_4:+77910531 | None:intergenic |
| CAAGAAACTTGCCAAGATAA+AGG | 0.359795 | 4_4:-77910985 | Msa0705320:CDS |
| AGAATACCATGGTTGAGTTT+GGG | 0.376037 | 4_4:+77911829 | None:intergenic |
| ATTCGACATAGATGCATCTA+AGG | 0.393010 | 4_4:-77910565 | Msa0705320:CDS |
| TAACTCGTGGGCAGCAAACT+TGG | 0.397845 | 4_4:-77907577 | Msa0705320:CDS |
| GCCCAAAGAAGGTGATAATA+TGG | 0.427248 | 4_4:-77910532 | Msa0705320:CDS |
| TCAATACGAGTTTCAACATC+TGG | 0.427862 | 4_4:+77911187 | None:intergenic |
| CAATATATTGCATAGCCTGC+TGG | 0.433604 | 4_4:+77911218 | None:intergenic |
| GCATCTATGTCGAATACTCT+TGG | 0.433663 | 4_4:+77910573 | None:intergenic |
| TGCCAAGATAAAGGAAATAC+AGG | 0.434552 | 4_4:-77910976 | Msa0705320:CDS |
| GGTCCATAAAGCAGCTTTGA+AGG | 0.436788 | 4_4:-77907499 | Msa0705320:CDS |
| AGCAATTATATTATAGGGAG+TGG | 0.443431 | 4_4:+77911767 | None:intergenic |
| TGCAGATATTCCATCTCTAC+TGG | 0.445585 | 4_4:-77910496 | Msa0705320:CDS |
| GGACATGATCCTGGCGGTCT+AGG | 0.445916 | 4_4:+77910625 | None:intergenic |
| AGATCAGCCGGCGAAATTCT+CGG | 0.457054 | 4_4:-77911666 | Msa0705320:CDS |
| ACTATTACGAGCTAATGATT+AGG | 0.458857 | 4_4:-77910461 | Msa0705320:intron |
| TCTGCTTTGAAGCCAAAGCC+TGG | 0.465047 | 4_4:-77911611 | Msa0705320:CDS |
| TATGGTTGTTACCAAGGCTC+TGG | 0.483429 | 4_4:-77907667 | Msa0705320:CDS |
| CTCAAGATAATCATTGTTGT+GGG | 0.489261 | 4_4:+77908686 | None:intergenic |
| CTTACAGGAATAAAATCAGC+AGG | 0.489883 | 4_4:+77908612 | None:intergenic |
| GGAGAAGCTGCTTGATCTTG+TGG | 0.495189 | 4_4:-77907556 | Msa0705320:CDS |
| CATCTATGTCGAATACTCTT+GGG | 0.496534 | 4_4:+77910574 | None:intergenic |
| CAAGGTGGAATTTAAAAGAC+TGG | 0.502902 | 4_4:+77908426 | None:intergenic |
| TTTGGGCACGGACATGATCC+TGG | 0.504121 | 4_4:+77910616 | None:intergenic |
| TCTCAAGATAATCATTGTTG+TGG | 0.506852 | 4_4:+77908685 | None:intergenic |
| AATCTTTGCAACCAGAGCCT+TGG | 0.507062 | 4_4:+77907656 | None:intergenic |
| GCAAAGATTGACAGACCAAT+GGG | 0.508334 | 4_4:-77907642 | Msa0705320:CDS |
| TCGACTCTGCCTAGACCGCC+AGG | 0.509366 | 4_4:-77910634 | Msa0705320:CDS |
| GTTTGGACAAAACGACAATC+TGG | 0.512141 | 4_4:+77911574 | None:intergenic |
| CAACTGGTACCTGCTTAAGC+TGG | 0.513972 | 4_4:+77911544 | None:intergenic |
| TGCTTCAACTCCAGTAGAGA+TGG | 0.518855 | 4_4:+77910486 | None:intergenic |
| TCTCCCAAAGAGCTGTCCAT+TGG | 0.527502 | 4_4:+77908230 | None:intergenic |
| TGTGACAGCGATGGTCCAGC+AGG | 0.529317 | 4_4:-77911233 | Msa0705320:CDS |
| ACATGCAGCGATCGATAAAG+AGG | 0.529924 | 4_4:+77911795 | None:intergenic |
| CAAAGCTGCTTTATGGACCA+TGG | 0.531327 | 4_4:+77907503 | None:intergenic |
| ACATTGAACAGTGTATCTGC+TGG | 0.532773 | 4_4:-77911154 | Msa0705320:CDS |
| TGAGATTGAGAGAGCAAGGT+TGG | 0.535070 | 4_4:-77911009 | Msa0705320:CDS |
| AACCTTTCAGAATATTCTTG+TGG | 0.539043 | 4_4:-77908039 | Msa0705320:intron |
| TTGCATCAAATCAGCAGCCT+CGG | 0.540212 | 4_4:+77910944 | None:intergenic |
| ACGACGCGGCCAGCTTAAGC+AGG | 0.547759 | 4_4:-77911553 | Msa0705320:intron |
| GTCTTTACATTCAGATCCTG+AGG | 0.550708 | 4_4:-77908495 | Msa0705320:intron |
| GAAGCTGAGAAGCATCTGTC+CGG | 0.552717 | 4_4:-77907690 | Msa0705320:CDS |
| TCTTGTGCCGAGAATTTCGC+CGG | 0.553366 | 4_4:+77911659 | None:intergenic |
| TGGAAACAGACTATTCCCAT+TGG | 0.557174 | 4_4:+77907627 | None:intergenic |
| AGTAGAGATGGAATATCTGC+AGG | 0.560376 | 4_4:+77910498 | None:intergenic |
| TGCAAAGATTGACAGACCAA+TGG | 0.572504 | 4_4:-77907643 | Msa0705320:CDS |
| TGAGAAGCATCTGTCCGGTA+TGG | 0.572589 | 4_4:-77907685 | Msa0705320:CDS |
| GAGGAAAATATGTTGGTGCT+TGG | 0.574826 | 4_4:-77908476 | Msa0705320:CDS |
| CTTTAACCCAAACTCAACCA+TGG | 0.575379 | 4_4:-77911835 | None:intergenic |
| GTCCGGTATGGTTGTTACCA+AGG | 0.577395 | 4_4:-77907673 | Msa0705320:CDS |
| GCAACGATGTTCTTAACTCG+TGG | 0.578239 | 4_4:-77907590 | Msa0705320:CDS |
| GAGAAGCAGATGAGATCAGC+CGG | 0.583875 | 4_4:-77911678 | Msa0705320:CDS |
| TTCTTGAGAGTATTTGGGCA+CGG | 0.586277 | 4_4:+77910604 | None:intergenic |
| GCCAAGATAAAGGAAATACA+GGG | 0.586967 | 4_4:-77910975 | Msa0705320:CDS |
| ACGTTGAGATTGAGAGAGCA+AGG | 0.591447 | 4_4:-77911013 | Msa0705320:CDS |
| GATTTGCAAGATATCTATTG+CGG | 0.596718 | 4_4:+77911632 | None:intergenic |
| TTTAAAAGACTGGACTGCAT+CGG | 0.598019 | 4_4:+77908436 | None:intergenic |
| CATTGAACAGTGTATCTGCT+GGG | 0.598121 | 4_4:-77911153 | Msa0705320:CDS |
| AGATCCTGAGGAAAATATGT+TGG | 0.600984 | 4_4:-77908483 | Msa0705320:CDS |
| CACTCAGGCTGTGACAGCGA+TGG | 0.602022 | 4_4:-77911242 | Msa0705320:intron |
| AGATAGATTTCTATCCTCCA+AGG | 0.603704 | 4_4:+77908408 | None:intergenic |
| TTTGAAGCAGCTGGTCACCA+TGG | 0.604172 | 4_4:-77908260 | Msa0705320:CDS |
| AGCCTTGGTAACAACCATAC+CGG | 0.606298 | 4_4:+77907671 | None:intergenic |
| CAACGATGTTCTTAACTCGT+GGG | 0.607448 | 4_4:-77907589 | Msa0705320:CDS |
| AGGTGATAATATGGTCGAAG+AGG | 0.618539 | 4_4:-77910523 | Msa0705320:CDS |
| GAATGAGTTTGACAATGAGA+TGG | 0.628221 | 4_4:-77908200 | Msa0705320:CDS |
| TCACCATGGAAGTCATCCAA+TGG | 0.630891 | 4_4:-77908246 | Msa0705320:CDS |
| GAACAGTGTATCTGCTGGGA+AGG | 0.631990 | 4_4:-77911149 | Msa0705320:intron |
| AGTCTGTTTCCAAACAGCAA+AGG | 0.634017 | 4_4:-77907616 | Msa0705320:CDS |
| CTGGACTGCATCGGTGAATG+TGG | 0.634478 | 4_4:+77908445 | None:intergenic |
| TCAAATACACAAGGAAACCA+TGG | 0.640379 | 4_4:-77907520 | Msa0705320:CDS |
| TGATTTGATGCAAGAAATTG+CGG | 0.655673 | 4_4:-77910934 | Msa0705320:intron |
| GAGCTGTCATCAAATACACA+AGG | 0.670564 | 4_4:-77907529 | Msa0705320:CDS |
| TTACAGGAATAAAATCAGCA+GGG | 0.674829 | 4_4:+77908613 | None:intergenic |
| TAGATTTCTATCCTCCAAGG+TGG | 0.684299 | 4_4:+77908411 | None:intergenic |
| TGTCCATTGGATGACTTCCA+TGG | 0.689019 | 4_4:+77908243 | None:intergenic |
| CCAAGATAAAGGAAATACAG+GGG | 0.720940 | 4_4:-77910974 | Msa0705320:CDS |
| ATCTTAAATAGAGAATACCA+TGG | 0.725934 | 4_4:+77911818 | None:intergenic |
| GGGCACGGACATGATCCTGG+CGG | 0.747981 | 4_4:+77910619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAATGTCTTTTAAAA+TGG | + | chr4_4:77908257-77908276 | None:intergenic | 10.0% |
| !! | TAAATTTATTTATTTGTGTT+TGG | - | chr4_4:77910383-77910402 | Msa0705320:intron | 10.0% |
| !! | AAATTTATTTATTTGTGTTT+GGG | - | chr4_4:77910384-77910403 | Msa0705320:intron | 10.0% |
| !!! | AAACTTTTTTTTTCTTATTT+TGG | - | chr4_4:77910588-77910607 | Msa0705320:CDS | 10.0% |
| !! | AAAAAACAAATAAAATAAGA+TGG | + | chr4_4:77911575-77911594 | None:intergenic | 10.0% |
| !! | TGAAAAGCAATTATATTATA+GGG | + | chr4_4:77907565-77907584 | None:intergenic | 15.0% |
| !! | TTGAAAAGCAATTATATTAT+AGG | + | chr4_4:77907566-77907585 | None:intergenic | 15.0% |
| !!! | ATAAAATCTTTTAAACCTAA+CGG | + | chr4_4:77907843-77907862 | None:intergenic | 15.0% |
| !!! | TTTTAAAATGGATTATTCTA+TGG | + | chr4_4:77908245-77908264 | None:intergenic | 15.0% |
| !! | GTTTGTATAAATTAAACTAA+AGG | + | chr4_4:77909040-77909059 | None:intergenic | 15.0% |
| !!! | TTTGGTTTTTATATTCAAAT+AGG | + | chr4_4:77909147-77909166 | None:intergenic | 15.0% |
| !! | ACTAAATTATACTGTATTTA+TGG | + | chr4_4:77909223-77909242 | None:intergenic | 15.0% |
| !!! | TAATTAACTGTTTTAATTCT+TGG | + | chr4_4:77909299-77909318 | None:intergenic | 15.0% |
| !! | CTCATTTATAAAATTCTAAA+TGG | + | chr4_4:77909901-77909920 | None:intergenic | 15.0% |
| !!! | CATTTAGAATTTTATAAATG+AGG | - | chr4_4:77909899-77909918 | Msa0705320:intron | 15.0% |
| !! | AAATATAAATGACAATTGAT+AGG | + | chr4_4:77910153-77910172 | None:intergenic | 15.0% |
| !!! | TTTGAAAATGATTTAATTTG+TGG | + | chr4_4:77910329-77910348 | None:intergenic | 15.0% |
| !! | AATAAGAAAAAAAAAGTTTC+AGG | + | chr4_4:77910587-77910606 | None:intergenic | 15.0% |
| !!! | ATATTTTAACATGATTAGAA+AGG | + | chr4_4:77910987-77911006 | None:intergenic | 15.0% |
| !!! | ACTTTAATAACTTTTTCTTA+CGG | - | chr4_4:77911411-77911430 | Msa0705320:intron | 15.0% |
| !! | AATTGTTTGCTTAAAATGAT+TGG | - | chr4_4:77907891-77907910 | Msa0705320:intron | 20.0% |
| !!! | TTAAAATGATTGGTTTGTTT+AGG | - | chr4_4:77907901-77907920 | Msa0705320:intron | 20.0% |
| !!! | TAAAATGATTGGTTTGTTTA+GGG | - | chr4_4:77907902-77907921 | Msa0705320:intron | 20.0% |
| !!! | TTATATCCTTTATTCGTTTT+TGG | - | chr4_4:77908445-77908464 | Msa0705320:CDS | 20.0% |
| !!! | TCTTGTTTTATCTAATGATT+AGG | - | chr4_4:77908922-77908941 | Msa0705320:intron | 20.0% |
| !!! | TTTAGTTTCATTAACTTTTG+AGG | - | chr4_4:77909103-77909122 | Msa0705320:intron | 20.0% |
| !! | TACAGTATAATTTAGTAACA+AGG | - | chr4_4:77909227-77909246 | Msa0705320:intron | 20.0% |
| !! | ACAGTTAATTAAAAACTTGT+TGG | - | chr4_4:77909308-77909327 | Msa0705320:intron | 20.0% |
| !!! | TTTTTAGAATCTGAAAGATA+AGG | + | chr4_4:77909592-77909611 | None:intergenic | 20.0% |
| !! | GAAAATAAGTGATTAAAATG+TGG | + | chr4_4:77909721-77909740 | None:intergenic | 20.0% |
| !! | TTTCAAAATAGTTAAGAACT+GGG | + | chr4_4:77909809-77909828 | None:intergenic | 20.0% |
| !!! | AAGTTCAAACTCATTTTATA+TGG | + | chr4_4:77909967-77909986 | None:intergenic | 20.0% |
| !!! | TATTTTTAGAACGTTATCAA+CGG | + | chr4_4:77910048-77910067 | None:intergenic | 20.0% |
| !! | TTCATTTGAATTATGTGTAA+AGG | - | chr4_4:77910197-77910216 | Msa0705320:intron | 20.0% |
| !! | TCATTTGAATTATGTGTAAA+GGG | - | chr4_4:77910198-77910217 | Msa0705320:intron | 20.0% |
| !! | ATCGTATAATAGAATCTTAT+AGG | + | chr4_4:77910773-77910792 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTGTAAGGAATT+TGG | + | chr4_4:77911220-77911239 | None:intergenic | 20.0% |
| !!! | GAAACATAAAAAAAAGTGTA+AGG | + | chr4_4:77911227-77911246 | None:intergenic | 20.0% |
| !! | AACAAATAAAATAAGATGGA+AGG | + | chr4_4:77911571-77911590 | None:intergenic | 20.0% |
| ! | ATCTTAAATAGAGAATACCA+TGG | + | chr4_4:77907509-77907528 | None:intergenic | 25.0% |
| ! | TTTGTATGATTGGTACAAAA+AGG | - | chr4_4:77908034-77908053 | Msa0705320:intron | 25.0% |
| ! | TTACATCCAAAAACGAATAA+AGG | + | chr4_4:77908454-77908473 | None:intergenic | 25.0% |
| ! | GATTAGTACAAACTATTGTT+TGG | - | chr4_4:77908476-77908495 | Msa0705320:CDS | 25.0% |
| ! | TCTTCTATGTTAAATTGTGT+AGG | - | chr4_4:77908666-77908685 | Msa0705320:CDS | 25.0% |
| !!! | TATCTTTCTTGAGAGTATTT+GGG | + | chr4_4:77908728-77908747 | None:intergenic | 25.0% |
| !!! | TTATCTTTCTTGAGAGTATT+TGG | + | chr4_4:77908729-77908748 | None:intergenic | 25.0% |
| ! | AAGAAATACTACAACTAAAC+AGG | + | chr4_4:77908906-77908925 | None:intergenic | 25.0% |
| ! | AAGAAATACTACAACTAAAC+AGG | + | chr4_4:77908906-77908925 | None:intergenic | 25.0% |
| ! | AAACTAAAATATCGAAAACC+AGG | + | chr4_4:77909091-77909110 | None:intergenic | 25.0% |
| !! | TATTTATGGATTACTAGAGT+TGG | + | chr4_4:77909209-77909228 | None:intergenic | 25.0% |
| !!! | TGTTTTAATTCTTGGTTTGA+TGG | + | chr4_4:77909291-77909310 | None:intergenic | 25.0% |
| !! | TCCTTTTTATGTATATCTAC+GGG | + | chr4_4:77909418-77909437 | None:intergenic | 25.0% |
| !! | CTCCTTTTTATGTATATCTA+CGG | + | chr4_4:77909419-77909438 | None:intergenic | 25.0% |
| !! | AACTTTGGAAATTTAGGAAT+TGG | + | chr4_4:77909747-77909766 | None:intergenic | 25.0% |
| !! | ATGGATAACTTTGGAAATTT+AGG | + | chr4_4:77909753-77909772 | None:intergenic | 25.0% |
| ! | AATGAAAAGTAGAGATGAAA+TGG | + | chr4_4:77909772-77909791 | None:intergenic | 25.0% |
| ! | GTTTCAAAATAGTTAAGAAC+TGG | + | chr4_4:77909810-77909829 | None:intergenic | 25.0% |
| ! | TACACATAATTCAAATGAAC+AGG | + | chr4_4:77910196-77910215 | None:intergenic | 25.0% |
| ! | AAAACATATTGCAAGAATGA+AGG | + | chr4_4:77910304-77910323 | None:intergenic | 25.0% |
| ! | CTGAATGTAAAGACAATATT+CGG | + | chr4_4:77910823-77910842 | None:intergenic | 25.0% |
| ! | TGAAAAATAGGATAACATAC+TGG | + | chr4_4:77910956-77910975 | None:intergenic | 25.0% |
| ! | AAGGATGAAAGATGAAAAAT+AGG | + | chr4_4:77910968-77910987 | None:intergenic | 25.0% |
| ! | TTATGCACGAGTAATTAATT+AGG | + | chr4_4:77911609-77911628 | None:intergenic | 25.0% |
| AGCAATTATATTATAGGGAG+TGG | + | chr4_4:77907560-77907579 | None:intergenic | 30.0% | |
| GATTTGCAAGATATCTATTG+CGG | + | chr4_4:77907695-77907714 | None:intergenic | 30.0% | |
| ! | CTTTGTTGTGTTAGGAATTA+GGG | - | chr4_4:77907814-77907833 | Msa0705320:intron | 30.0% |
| TTTCTCTCTCTCATTTAGAT+TGG | - | chr4_4:77907867-77907886 | Msa0705320:intron | 30.0% | |
| !! | GCTTTCAACTCTAAAATGAT+TGG | - | chr4_4:77907934-77907953 | Msa0705320:intron | 30.0% |
| !!! | CTGCATCTTTTTTGTATGAT+TGG | - | chr4_4:77908024-77908043 | Msa0705320:CDS | 30.0% |
| GCTATTATATATATGCACTC+AGG | - | chr4_4:77908067-77908086 | Msa0705320:intron | 30.0% | |
| GAGAAGATGATAAAACAGTA+TGG | + | chr4_4:77908223-77908242 | None:intergenic | 30.0% | |
| TGATTTGATGCAAGAAATTG+CGG | - | chr4_4:77908390-77908409 | Msa0705320:intron | 30.0% | |
| ! | TGTTTGGTTTACTTATGTGA+TGG | - | chr4_4:77908492-77908511 | Msa0705320:intron | 30.0% |
| ! | GTTTGGTTTACTTATGTGAT+GGG | - | chr4_4:77908493-77908512 | Msa0705320:intron | 30.0% |
| ! | AATTTTCTCAGTTTTTGCCA+TGG | + | chr4_4:77908547-77908566 | None:intergenic | 30.0% |
| ACCATATTATCACCTTCTTT+GGG | + | chr4_4:77908796-77908815 | None:intergenic | 30.0% | |
| ACTATTACGAGCTAATGATT+AGG | - | chr4_4:77908863-77908882 | Msa0705320:intron | 30.0% | |
| TATATTACGTAAGTGCAGAT+TGG | + | chr4_4:77909361-77909380 | None:intergenic | 30.0% | |
| !! | CTATGATTTGTTTCTATGCT+TGG | + | chr4_4:77909394-77909413 | None:intergenic | 30.0% |
| TCCCGTAGATATACATAAAA+AGG | - | chr4_4:77909414-77909433 | Msa0705320:intron | 30.0% | |
| CGTAGATATACATAAAAAGG+AGG | - | chr4_4:77909417-77909436 | Msa0705320:intron | 30.0% | |
| AGAGATGAAATGGATAACTT+TGG | + | chr4_4:77909762-77909781 | None:intergenic | 30.0% | |
| !! | GAACTTTAGAATAAACTTGC+TGG | - | chr4_4:77909981-77910000 | Msa0705320:intron | 30.0% |
| !! | TAGAATAAACTTGCTGGATA+CGG | - | chr4_4:77909987-77910006 | Msa0705320:intron | 30.0% |
| ACCCAAGTTTAGAAAACTAT+GGG | + | chr4_4:77910447-77910466 | None:intergenic | 30.0% | |
| !!! | TGCTGCATATTTTTCAAGTA+CGG | - | chr4_4:77910535-77910554 | Msa0705320:CDS | 30.0% |
| CTCAAGATAATCATTGTTGT+GGG | + | chr4_4:77910641-77910660 | None:intergenic | 30.0% | |
| TCTCAAGATAATCATTGTTG+TGG | + | chr4_4:77910642-77910661 | None:intergenic | 30.0% | |
| TTACAGGAATAAAATCAGCA+GGG | + | chr4_4:77910714-77910733 | None:intergenic | 30.0% | |
| AAAGAGAATAGAAAGCTTAC+AGG | + | chr4_4:77910730-77910749 | None:intergenic | 30.0% | |
| ! | TGTTTAGAATTCCTTGTCAT+TGG | - | chr4_4:77911009-77911028 | Msa0705320:CDS | 30.0% |
| ! | GTTTAGAATTCCTTGTCATT+GGG | - | chr4_4:77911010-77911029 | Msa0705320:CDS | 30.0% |
| AACCTTTCAGAATATTCTTG+TGG | - | chr4_4:77911285-77911304 | Msa0705320:intron | 30.0% | |
| TACCACAAGAATATTCTGAA+AGG | + | chr4_4:77911290-77911309 | None:intergenic | 30.0% | |
| TAACAGAACAAAACCATAAC+TGG | + | chr4_4:77911386-77911405 | None:intergenic | 30.0% | |
| !! | AATAACTTTTTCTTACGGTG+TGG | - | chr4_4:77911416-77911435 | Msa0705320:intron | 30.0% |
| !! | ATAACTTTTTCTTACGGTGT+GGG | - | chr4_4:77911417-77911436 | Msa0705320:intron | 30.0% |
| TCAAAGGAAAACTATATCCT+TGG | - | chr4_4:77911450-77911469 | Msa0705320:intron | 30.0% | |
| TAATTACTCGTGCATAATTC+AGG | - | chr4_4:77911612-77911631 | Msa0705320:CDS | 30.0% | |
| AGAATACCATGGTTGAGTTT+GGG | + | chr4_4:77907498-77907517 | None:intergenic | 35.0% | |
| ! | TGCTTTTCAATTCGTTTTGC+AGG | - | chr4_4:77907576-77907595 | Msa0705320:CDS | 35.0% |
| ! | ATTGATGCCTTTGTTGTGTT+AGG | - | chr4_4:77907806-77907825 | Msa0705320:intron | 35.0% |
| CCTAATTCCTAACACAACAA+AGG | + | chr4_4:77907816-77907835 | None:intergenic | 35.0% | |
| ! | CCTTTGTTGTGTTAGGAATT+AGG | - | chr4_4:77907813-77907832 | Msa0705320:intron | 35.0% |
| ! | TCTAAAATGATTGGTGCAGT+TGG | - | chr4_4:77907943-77907962 | Msa0705320:intron | 35.0% |
| !! | GGTACAAAAAGGTATTAACG+AGG | - | chr4_4:77908045-77908064 | Msa0705320:intron | 35.0% |
| TCAATACGAGTTTCAACATC+TGG | + | chr4_4:77908140-77908159 | None:intergenic | 35.0% | |
| CAAGAAACTTGCCAAGATAA+AGG | - | chr4_4:77908339-77908358 | Msa0705320:intron | 35.0% | |
| TGCCAAGATAAAGGAAATAC+AGG | - | chr4_4:77908348-77908367 | Msa0705320:intron | 35.0% | |
| GCCAAGATAAAGGAAATACA+GGG | - | chr4_4:77908349-77908368 | Msa0705320:intron | 35.0% | |
| CCAAGATAAAGGAAATACAG+GGG | - | chr4_4:77908350-77908369 | Msa0705320:intron | 35.0% | |
| !! | ATGTGATGGGTAATCTTATC+AGG | - | chr4_4:77908506-77908525 | Msa0705320:intron | 35.0% |
| ! | TCTTATCAGGTGGAAACTTT+TGG | - | chr4_4:77908519-77908538 | Msa0705320:intron | 35.0% |
| CATCTATGTCGAATACTCTT+GGG | + | chr4_4:77908753-77908772 | None:intergenic | 35.0% | |
| ATTCGACATAGATGCATCTA+AGG | - | chr4_4:77908759-77908778 | Msa0705320:intron | 35.0% | |
| GAAAAGAAAAAGCCCAAAGA+AGG | - | chr4_4:77908781-77908800 | Msa0705320:intron | 35.0% | |
| GACCATATTATCACCTTCTT+TGG | + | chr4_4:77908797-77908816 | None:intergenic | 35.0% | |
| ! | ACTAGTAGTTACAAGTACTG+TGG | - | chr4_4:77908994-77909013 | Msa0705320:intron | 35.0% |
| GTAGATACTCTAAATTAGCC+TGG | - | chr4_4:77909070-77909089 | Msa0705320:intron | 35.0% | |
| GACATTCATGCATCATTGTT+TGG | + | chr4_4:77909165-77909184 | None:intergenic | 35.0% | |
| ! | TTATGGATTACTAGAGTTGG+AGG | + | chr4_4:77909206-77909225 | None:intergenic | 35.0% |
| !! | TTGTTTCTATGCTTGGCATT+TGG | + | chr4_4:77909387-77909406 | None:intergenic | 35.0% |
| AATTTGAGTAAACGCAAGCA+AGG | - | chr4_4:77909487-77909506 | Msa0705320:intron | 35.0% | |
| TAAAATTGCAGTCAGACAGA+CGG | - | chr4_4:77909552-77909571 | Msa0705320:intron | 35.0% | |
| AAAATATCCAATCACAGTGC+AGG | + | chr4_4:77909660-77909679 | None:intergenic | 35.0% | |
| ! | GCACTGTGATTGGATATTTT+TGG | - | chr4_4:77909660-77909679 | Msa0705320:intron | 35.0% |
| AAGGAATCCAAATGTTAGGA+AGG | + | chr4_4:77910017-77910036 | None:intergenic | 35.0% | |
| AGACAAGGAATCCAAATGTT+AGG | + | chr4_4:77910021-77910040 | None:intergenic | 35.0% | |
| GTTATCAACGGTAAAAGACA+AGG | + | chr4_4:77910036-77910055 | None:intergenic | 35.0% | |
| GTCATGACATGGTTTAAGAA+AGG | - | chr4_4:77910244-77910263 | Msa0705320:intron | 35.0% | |
| ! | TTGGGATGTGATTTGTAACA+TGG | - | chr4_4:77910402-77910421 | Msa0705320:intron | 35.0% |
| ! | TCCCCATAGTTTTCTAAACT+TGG | - | chr4_4:77910442-77910461 | Msa0705320:intron | 35.0% |
| CCCAAGTTTAGAAAACTATG+GGG | + | chr4_4:77910446-77910465 | None:intergenic | 35.0% | |
| ! | CCCCATAGTTTTCTAAACTT+GGG | - | chr4_4:77910443-77910462 | Msa0705320:intron | 35.0% |
| GACCCAAGTTTAGAAAACTA+TGG | + | chr4_4:77910448-77910467 | None:intergenic | 35.0% | |
| CACTGAATGTGAAATCCATA+TGG | - | chr4_4:77910486-77910505 | Msa0705320:CDS | 35.0% | |
| TAAACATGCACTCATCCATA+TGG | + | chr4_4:77910504-77910523 | None:intergenic | 35.0% | |
| !!! | GCTGCATATTTTTCAAGTAC+GGG | - | chr4_4:77910536-77910555 | Msa0705320:CDS | 35.0% |
| !!! | CTGCATATTTTTCAAGTACG+GGG | - | chr4_4:77910537-77910556 | Msa0705320:CDS | 35.0% |
| ! | TGGTTTTTGTCTGTGATGTA+AGG | - | chr4_4:77910608-77910627 | Msa0705320:CDS | 35.0% |
| CTTACAGGAATAAAATCAGC+AGG | + | chr4_4:77910715-77910734 | None:intergenic | 35.0% | |
| AGATCCTGAGGAAAATATGT+TGG | - | chr4_4:77910841-77910860 | Msa0705320:intron | 35.0% | |
| TTTAAAAGACTGGACTGCAT+CGG | + | chr4_4:77910891-77910910 | None:intergenic | 35.0% | |
| CAAGGTGGAATTTAAAAGAC+TGG | + | chr4_4:77910901-77910920 | None:intergenic | 35.0% | |
| ! | CAGTCTTTTAAATTCCACCT+TGG | - | chr4_4:77910899-77910918 | Msa0705320:intron | 35.0% |
| ! | TCTTTTAAATTCCACCTTGG+AGG | - | chr4_4:77910902-77910921 | Msa0705320:intron | 35.0% |
| AGATAGATTTCTATCCTCCA+AGG | + | chr4_4:77910919-77910938 | None:intergenic | 35.0% | |
| AGGATAACATACTGGAAGTT+TGG | + | chr4_4:77910948-77910967 | None:intergenic | 35.0% | |
| GAATGAGTTTGACAATGAGA+TGG | - | chr4_4:77911124-77911143 | Msa0705320:intron | 35.0% | |
| TTTGACAATGAGATGGTCTT+TGG | - | chr4_4:77911131-77911150 | Msa0705320:intron | 35.0% | |
| ACTATATCCTTGGAAAGTGA+AGG | - | chr4_4:77911460-77911479 | Msa0705320:intron | 35.0% | |
| ! | CAACATCTATTTTCACATGC+AGG | + | chr4_4:77911526-77911545 | None:intergenic | 35.0% |
| GTAAACCTGTAACTACCTAT+TGG | - | chr4_4:77911545-77911564 | Msa0705320:intron | 35.0% | |
| AAATAAGATGGAAGGCCAAT+AGG | + | chr4_4:77911563-77911582 | None:intergenic | 35.0% | |
| TCAAATACACAAGGAAACCA+TGG | - | chr4_4:77911804-77911823 | Msa0705320:five_prime_UTR | 35.0% | |
| ! | AAACCTTCAAAGCTGCTTTA+TGG | + | chr4_4:77911831-77911850 | None:intergenic | 35.0% |
| GAGAATACCATGGTTGAGTT+TGG | + | chr4_4:77907499-77907518 | None:intergenic | 40.0% | |
| ! | ATTCGTTTTGCAGGCAAACA+TGG | - | chr4_4:77907585-77907604 | Msa0705320:CDS | 40.0% |
| ! | ATTTAGCGTTTTCCAGGCTT+TGG | + | chr4_4:77907728-77907747 | None:intergenic | 40.0% |
| GTTTGGACAAAACGACAATC+TGG | + | chr4_4:77907753-77907772 | None:intergenic | 40.0% | |
| !! | CAAAGGCATCAATTTGCAAC+TGG | + | chr4_4:77907799-77907818 | None:intergenic | 40.0% |
| TAGGAATTAGGGTTTCCGTT+AGG | - | chr4_4:77907825-77907844 | Msa0705320:intron | 40.0% | |
| ! | TGGACAGAGTTTAGGGTTTA+AGG | - | chr4_4:77907963-77907982 | Msa0705320:intron | 40.0% |
| CAATATATTGCATAGCCTGC+TGG | + | chr4_4:77908109-77908128 | None:intergenic | 40.0% | |
| ACATTGAACAGTGTATCTGC+TGG | - | chr4_4:77908170-77908189 | Msa0705320:CDS | 40.0% | |
| CATTGAACAGTGTATCTGCT+GGG | - | chr4_4:77908171-77908190 | Msa0705320:CDS | 40.0% | |
| CCCCTGTATTTCCTTTATCT+TGG | + | chr4_4:77908353-77908372 | None:intergenic | 40.0% | |
| ! | TGATGGGTAATCTTATCAGG+TGG | - | chr4_4:77908509-77908528 | Msa0705320:intron | 40.0% |
| !! | TTCTTGAGAGTATTTGGGCA+CGG | + | chr4_4:77908723-77908742 | None:intergenic | 40.0% |
| GCATCTATGTCGAATACTCT+TGG | + | chr4_4:77908754-77908773 | None:intergenic | 40.0% | |
| GCCCAAAGAAGGTGATAATA+TGG | - | chr4_4:77908792-77908811 | Msa0705320:intron | 40.0% | |
| AGGTGATAATATGGTCGAAG+AGG | - | chr4_4:77908801-77908820 | Msa0705320:intron | 40.0% | |
| AGTAGAGATGGAATATCTGC+AGG | + | chr4_4:77908829-77908848 | None:intergenic | 40.0% | |
| TGCAGATATTCCATCTCTAC+TGG | - | chr4_4:77908828-77908847 | Msa0705320:intron | 40.0% | |
| ! | TGAGGATATGCTTTTGATGC+TGG | - | chr4_4:77909121-77909140 | Msa0705320:intron | 40.0% |
| CAGATTGGAGTACATGTTTC+TGG | + | chr4_4:77909346-77909365 | None:intergenic | 40.0% | |
| AATACATCCTGCACTGTGAT+TGG | - | chr4_4:77909650-77909669 | Msa0705320:intron | 40.0% | |
| CGGTTATCCTTCCTAACATT+TGG | - | chr4_4:77910007-77910026 | Msa0705320:intron | 40.0% | |
| ATTATGTGTAAAGGGCAACC+TGG | - | chr4_4:77910206-77910225 | Msa0705320:intron | 40.0% | |
| AAGGCTTTACACCATTGTTG+TGG | - | chr4_4:77910263-77910282 | Msa0705320:intron | 40.0% | |
| AGGCTTTACACCATTGTTGT+GGG | - | chr4_4:77910264-77910283 | Msa0705320:intron | 40.0% | |
| GGATTTCACATTCAGTGAAG+TGG | + | chr4_4:77910483-77910502 | None:intergenic | 40.0% | |
| TGAGATTTGTCGCTGCTATA+AGG | - | chr4_4:77910657-77910676 | Msa0705320:intron | 40.0% | |
| ! | ATCAGCAGGGTTTTCTTTGA+TGG | + | chr4_4:77910701-77910720 | None:intergenic | 40.0% |
| GTCTTTACATTCAGATCCTG+AGG | - | chr4_4:77910829-77910848 | Msa0705320:intron | 40.0% | |
| ! | AGCACCAACATATTTTCCTC+AGG | + | chr4_4:77910848-77910867 | None:intergenic | 40.0% |
| ! | GAGGAAAATATGTTGGTGCT+TGG | - | chr4_4:77910848-77910867 | Msa0705320:intron | 40.0% |
| TAGATTTCTATCCTCCAAGG+TGG | + | chr4_4:77910916-77910935 | None:intergenic | 40.0% | |
| GCCTGTTATATGTTGTGTCT+AGG | - | chr4_4:77911036-77911055 | Msa0705320:intron | 40.0% | |
| GCCTAGACACAACATATAAC+AGG | + | chr4_4:77911040-77911059 | None:intergenic | 40.0% | |
| TGTGGGAATTCGTGTTTCAA+AGG | - | chr4_4:77911434-77911453 | Msa0705320:intron | 40.0% | |
| CTTGGAAAGTGAAGGTAGTA+GGG | - | chr4_4:77911468-77911487 | Msa0705320:intron | 40.0% | |
| TTGGAAAGTGAAGGTAGTAG+GGG | - | chr4_4:77911469-77911488 | Msa0705320:intron | 40.0% | |
| TGCAAAGATTGACAGACCAA+TGG | - | chr4_4:77911681-77911700 | Msa0705320:CDS | 40.0% | |
| GCAAAGATTGACAGACCAAT+GGG | - | chr4_4:77911682-77911701 | Msa0705320:CDS | 40.0% | |
| TGGAAACAGACTATTCCCAT+TGG | + | chr4_4:77911700-77911719 | None:intergenic | 40.0% | |
| AGTCTGTTTCCAAACAGCAA+AGG | - | chr4_4:77911708-77911727 | Msa0705320:CDS | 40.0% | |
| CAACGATGTTCTTAACTCGT+GGG | - | chr4_4:77911735-77911754 | Msa0705320:exon | 40.0% | |
| GAGCTGTCATCAAATACACA+AGG | - | chr4_4:77911795-77911814 | Msa0705320:five_prime_UTR | 40.0% | |
| ACATGCAGCGATCGATAAAG+AGG | + | chr4_4:77907532-77907551 | None:intergenic | 45.0% | |
| ! | CTGGTCATTTAGCGTTTTCC+AGG | + | chr4_4:77907734-77907753 | None:intergenic | 45.0% |
| GTGCAGTTGGACAGAGTTTA+GGG | - | chr4_4:77907956-77907975 | Msa0705320:intron | 45.0% | |
| ACGTTGAGATTGAGAGAGCA+AGG | - | chr4_4:77908311-77908330 | Msa0705320:intron | 45.0% | |
| TGAGATTGAGAGAGCAAGGT+TGG | - | chr4_4:77908315-77908334 | Msa0705320:intron | 45.0% | |
| TTGCATCAAATCAGCAGCCT+CGG | + | chr4_4:77908383-77908402 | None:intergenic | 45.0% | |
| TGCTTCAACTCCAGTAGAGA+TGG | + | chr4_4:77908841-77908860 | None:intergenic | 45.0% | |
| ! | GAGGTGGATTCATGCATCAT+AGG | + | chr4_4:77909187-77909206 | None:intergenic | 45.0% |
| TGGATTACTAGAGTTGGAGG+TGG | + | chr4_4:77909203-77909222 | None:intergenic | 45.0% | |
| ! | GTCATGACAAGAGCCTTGTA+GGG | + | chr4_4:77910232-77910251 | None:intergenic | 45.0% |
| ! | TGTCATGACAAGAGCCTTGT+AGG | + | chr4_4:77910233-77910252 | None:intergenic | 45.0% |
| ACAAGGCTCTTGTCATGACA+TGG | - | chr4_4:77910233-77910252 | Msa0705320:intron | 45.0% | |
| CTACAGTAGACCCACAACAA+TGG | + | chr4_4:77910277-77910296 | None:intergenic | 45.0% | |
| CATTGTTGTGGGTCTACTGT+AGG | - | chr4_4:77910275-77910294 | Msa0705320:intron | 45.0% | |
| ! | GCAGGGTTTTCTTTGATGGA+CGG | + | chr4_4:77910697-77910716 | None:intergenic | 45.0% |
| !!! | TAGGCTACTTTTGAAGCAGC+TGG | - | chr4_4:77911055-77911074 | Msa0705320:intron | 45.0% |
| TCACCATGGAAGTCATCCAA+TGG | - | chr4_4:77911078-77911097 | Msa0705320:intron | 45.0% | |
| TGTCCATTGGATGACTTCCA+TGG | + | chr4_4:77911084-77911103 | None:intergenic | 45.0% | |
| TCATCCAATGGACAGCTCTT+TGG | - | chr4_4:77911090-77911109 | Msa0705320:intron | 45.0% | |
| CATCCAATGGACAGCTCTTT+GGG | - | chr4_4:77911091-77911110 | Msa0705320:intron | 45.0% | |
| AACTGGCATTACACACCTCT+AGG | + | chr4_4:77911369-77911388 | None:intergenic | 45.0% | |
| GAGGTGTGTAATGCCAGTTA+TGG | - | chr4_4:77911370-77911389 | Msa0705320:intron | 45.0% | |
| CCTACTACCTTCACTTTCCA+AGG | + | chr4_4:77911470-77911489 | None:intergenic | 45.0% | |
| CCTTGGAAAGTGAAGGTAGT+AGG | - | chr4_4:77911467-77911486 | Msa0705320:intron | 45.0% | |
| !! | TGAAGGTAGTAGGGGTATTG+TGG | - | chr4_4:77911477-77911496 | Msa0705320:intron | 45.0% |
| GAAGGCCAATAGGTAGTTAC+AGG | + | chr4_4:77911553-77911572 | None:intergenic | 45.0% | |
| ! | AGCCTTGGTAACAACCATAC+CGG | + | chr4_4:77911656-77911675 | None:intergenic | 45.0% |
| TATGGTTGTTACCAAGGCTC+TGG | - | chr4_4:77911657-77911676 | Msa0705320:CDS | 45.0% | |
| AATCTTTGCAACCAGAGCCT+TGG | + | chr4_4:77911671-77911690 | None:intergenic | 45.0% | |
| !! | CGTTGCTATCCTTTGCTGTT+TGG | + | chr4_4:77911720-77911739 | None:intergenic | 45.0% |
| GCAACGATGTTCTTAACTCG+TGG | - | chr4_4:77911734-77911753 | Msa0705320:exon | 45.0% | |
| ! | CAAAGCTGCTTTATGGACCA+TGG | + | chr4_4:77911824-77911843 | None:intergenic | 45.0% |
| ! | GGTCCATAAAGCAGCTTTGA+AGG | - | chr4_4:77911825-77911844 | Msa0705320:five_prime_UTR | 45.0% |
| !!! | TTATTTTATTTGTTTTTTAA+TGG | - | chr4_4:77911577-77911596 | Msa0705320:CDS | 5.0% |
| !!! | TATTTTATTTGTTTTTTAAT+GGG | - | chr4_4:77911578-77911597 | Msa0705320:CDS | 5.0% |
| GAGAAGCAGATGAGATCAGC+CGG | - | chr4_4:77907646-77907665 | Msa0705320:CDS | 50.0% | |
| AGATCAGCCGGCGAAATTCT+CGG | - | chr4_4:77907658-77907677 | Msa0705320:CDS | 50.0% | |
| TCTTGTGCCGAGAATTTCGC+CGG | + | chr4_4:77907668-77907687 | None:intergenic | 50.0% | |
| !! | TCTGCTTTGAAGCCAAAGCC+TGG | - | chr4_4:77907713-77907732 | Msa0705320:intron | 50.0% |
| !! | GTCGTTTTGTCCAAACGACG+CGG | - | chr4_4:77907757-77907776 | Msa0705320:intron | 50.0% |
| CAACTGGTACCTGCTTAAGC+TGG | + | chr4_4:77907783-77907802 | None:intergenic | 50.0% | |
| GGTGCAGTTGGACAGAGTTT+AGG | - | chr4_4:77907955-77907974 | Msa0705320:intron | 50.0% | |
| GAACAGTGTATCTGCTGGGA+AGG | - | chr4_4:77908175-77908194 | Msa0705320:CDS | 50.0% | |
| ! | AATACAGGGGCTTTTAGCCG+AGG | - | chr4_4:77908363-77908382 | Msa0705320:intron | 50.0% |
| !!! | GGTGGAAACTTTTGGTGCCA+TGG | - | chr4_4:77908527-77908546 | Msa0705320:intron | 50.0% |
| AACAGGCACACCCAATGACA+AGG | + | chr4_4:77911023-77911042 | None:intergenic | 50.0% | |
| ! | TTTGAAGCAGCTGGTCACCA+TGG | - | chr4_4:77911064-77911083 | Msa0705320:intron | 50.0% |
| TCTCCCAAAGAGCTGTCCAT+TGG | + | chr4_4:77911097-77911116 | None:intergenic | 50.0% | |
| ! | GCTTTTGTGTCTCAGCCTAG+AGG | - | chr4_4:77911351-77911370 | Msa0705320:intron | 50.0% |
| !! | GAAGCTGAGAAGCATCTGTC+CGG | - | chr4_4:77911634-77911653 | Msa0705320:CDS | 50.0% |
| !! | TGAGAAGCATCTGTCCGGTA+TGG | - | chr4_4:77911639-77911658 | Msa0705320:CDS | 50.0% |
| GTCCGGTATGGTTGTTACCA+AGG | - | chr4_4:77911651-77911670 | Msa0705320:CDS | 50.0% | |
| TAACTCGTGGGCAGCAAACT+TGG | - | chr4_4:77911747-77911766 | Msa0705320:five_prime_UTR | 50.0% | |
| GGAGAAGCTGCTTGATCTTG+TGG | - | chr4_4:77911768-77911787 | Msa0705320:five_prime_UTR | 50.0% | |
| TTTGGGCACGGACATGATCC+TGG | + | chr4_4:77908711-77908730 | None:intergenic | 55.0% | |
| ! | CTGGACTGCATCGGTGAATG+TGG | + | chr4_4:77910882-77910901 | None:intergenic | 55.0% |
| CTTAAGCTGGCCGCGTCGTT+TGG | + | chr4_4:77907770-77907789 | None:intergenic | 60.0% | |
| CACTCAGGCTGTGACAGCGA+TGG | - | chr4_4:77908082-77908101 | Msa0705320:intron | 60.0% | |
| TGTGACAGCGATGGTCCAGC+AGG | - | chr4_4:77908091-77908110 | Msa0705320:intron | 60.0% | |
| GGACATGATCCTGGCGGTCT+AGG | + | chr4_4:77908702-77908721 | None:intergenic | 60.0% | |
| AAGGGCAACCTGGCCCTACA+AGG | - | chr4_4:77910216-77910235 | Msa0705320:intron | 60.0% | |
| ! | GACAAGAGCCTTGTAGGGCC+AGG | + | chr4_4:77910227-77910246 | None:intergenic | 60.0% |
| ACGACGCGGCCAGCTTAAGC+AGG | - | chr4_4:77907771-77907790 | Msa0705320:intron | 65.0% | |
| TCGACTCTGCCTAGACCGCC+AGG | - | chr4_4:77908690-77908709 | Msa0705320:CDS | 65.0% | |
| GGGCACGGACATGATCCTGG+CGG | + | chr4_4:77908708-77908727 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77907494 | 77911852 | 77907494 | ID=Msa0705320;Name=Msa0705320 |
| chr4_4 | mRNA | 77907494 | 77911852 | 77907494 | ID=Msa0705320-mRNA-1;Parent=Msa0705320;Name=Msa0705320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=110|0.11|0.1|1|1|1|10|0|438 |
| chr4_4 | exon | 77907494 | 77907712 | 77907494 | ID=Msa0705320-mRNA-1:exon:24834;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77907974 | 77908051 | 77907974 | ID=Msa0705320-mRNA-1:exon:24833;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77908138 | 77908288 | 77908138 | ID=Msa0705320-mRNA-1:exon:24832;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77908391 | 77908503 | 77908391 | ID=Msa0705320-mRNA-1:exon:24831;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77908617 | 77908716 | 77908617 | ID=Msa0705320-mRNA-1:exon:24830;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77910462 | 77910658 | 77910462 | ID=Msa0705320-mRNA-1:exon:24829;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77910762 | 77910818 | 77910762 | ID=Msa0705320-mRNA-1:exon:24828;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77910935 | 77911039 | 77910935 | ID=Msa0705320-mRNA-1:exon:24827;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77911150 | 77911257 | 77911150 | ID=Msa0705320-mRNA-1:exon:24826;Parent=Msa0705320-mRNA-1 |
| chr4_4 | exon | 77911554 | 77911852 | 77911554 | ID=Msa0705320-mRNA-1:exon:24825;Parent=Msa0705320-mRNA-1 |
| chr4_4 | five_prime_UTR | 77911743 | 77911852 | 77911743 | ID=Msa0705320-mRNA-1:five_prime_utr;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77911554 | 77911742 | 77911554 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77911150 | 77911257 | 77911150 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77910935 | 77911039 | 77910935 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77910762 | 77910818 | 77910762 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77910462 | 77910658 | 77910462 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77908617 | 77908716 | 77908617 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77908391 | 77908503 | 77908391 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77908138 | 77908288 | 77908138 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77907974 | 77908051 | 77907974 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| chr4_4 | CDS | 77907494 | 77907712 | 77907494 | ID=Msa0705320-mRNA-1:cds;Parent=Msa0705320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
