Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658890 | XP_003630160.2 | 96.818 | 440 | 14 | 0 | 38 | 477 | 2 | 441 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658890 | sp|Q9FIB6|PS12A_ARATH | 80.000 | 435 | 86 | 1 | 43 | 476 | 7 | 441 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032470 | Msa0658890 | 0.804826 | 1.792984e-49 | -8.615850e-47 |
| Msa0037570 | Msa0658890 | -0.802158 | 6.405837e-49 | -8.615850e-47 |
| Msa0043980 | Msa0658890 | 0.812991 | 3.208739e-51 | -8.615850e-47 |
| Msa0044260 | Msa0658890 | 0.829328 | 5.472719e-55 | -8.615850e-47 |
| Msa0044330 | Msa0658890 | 0.822245 | 2.625865e-53 | -8.615850e-47 |
| Msa0072120 | Msa0658890 | 0.800206 | 1.606714e-48 | -8.615850e-47 |
| Msa0075160 | Msa0658890 | -0.801851 | 7.409364e-49 | -8.615850e-47 |
| Msa0104240 | Msa0658890 | 0.808352 | 3.230947e-50 | -8.615850e-47 |
| Msa0652940 | Msa0658890 | 0.807767 | 4.304281e-50 | -8.615850e-47 |
| Msa0658890 | Msa0697880 | 0.800476 | 1.415948e-48 | -8.615850e-47 |
| Msa0658890 | Msa0707250 | 0.819465 | 1.145252e-52 | -8.615850e-47 |
| Msa0658890 | Msa0711450 | 0.818862 | 1.570338e-52 | -8.615850e-47 |
| Msa0658890 | Msa0733010 | 0.800680 | 1.286693e-48 | -8.615850e-47 |
| Msa0658890 | Msa0741440 | 0.803278 | 3.762673e-49 | -8.615850e-47 |
| Msa0658890 | Msa0822500 | 0.803765 | 2.981516e-49 | -8.615850e-47 |
| Msa0658890 | Msa0830230 | 0.822998 | 1.754514e-53 | -8.615850e-47 |
| Msa0658890 | Msa0831850 | 0.802658 | 5.053200e-49 | -8.615850e-47 |
| Msa0658890 | Msa0832150 | 0.813121 | 3.005065e-51 | -8.615850e-47 |
| Msa0658890 | Msa0835800 | 0.809707 | 1.656134e-50 | -8.615850e-47 |
| Msa0658890 | Msa0858130 | 0.821920 | 3.123151e-53 | -8.615850e-47 |
| Msa0658890 | Msa0878220 | 0.821673 | 3.563203e-53 | -8.615850e-47 |
| Msa0658890 | Msa0943970 | 0.840494 | 8.407777e-58 | -8.615850e-47 |
| Msa0658890 | Msa0944020 | 0.817508 | 3.179233e-52 | -8.615850e-47 |
| Msa0658890 | Msa0989360 | 0.833405 | 5.433973e-56 | -8.615850e-47 |
| Msa0658890 | Msa1001180 | 0.814726 | 1.330339e-51 | -8.615850e-47 |
| Msa0658890 | Msa1002850 | 0.803846 | 2.867953e-49 | -8.615850e-47 |
| Msa0658890 | Msa1023950 | 0.804453 | 2.144348e-49 | -8.615850e-47 |
| Msa0658890 | Msa1035480 | 0.831760 | 1.390148e-55 | -8.615850e-47 |
| Msa0658890 | Msa1048220 | 0.803932 | 2.753609e-49 | -8.615850e-47 |
| Msa0658890 | Msa1068600 | 0.802043 | 6.765896e-49 | -8.615850e-47 |
| Msa0658890 | Msa1075650 | 0.800525 | 1.383764e-48 | -8.615850e-47 |
| Msa0658890 | Msa1121700 | 0.808831 | 2.552959e-50 | -8.615850e-47 |
| Msa0658890 | Msa1122150 | 0.804556 | 2.040977e-49 | -8.615850e-47 |
| Msa0658890 | Msa1163090 | 0.823784 | 1.149273e-53 | -8.615850e-47 |
| Msa0658890 | Msa1181250 | 0.817934 | 2.549022e-52 | -8.615850e-47 |
| Msa0658890 | Msa1181330 | 0.815113 | 1.091467e-51 | -8.615850e-47 |
| Msa0658890 | Msa1181910 | 0.835764 | 1.387465e-56 | -8.615850e-47 |
| Msa0658890 | Msa1204530 | 0.804607 | 1.992180e-49 | -8.615850e-47 |
| Msa0658890 | Msa1232700 | 0.836627 | 8.375927e-57 | -8.615850e-47 |
| Msa0658890 | Msa1246360 | 0.800151 | 1.648994e-48 | -8.615850e-47 |
| Msa0658890 | Msa1257750 | 0.804461 | 2.136627e-49 | -8.615850e-47 |
| Msa0658890 | Msa1307560 | 0.800880 | 1.171120e-48 | -8.615850e-47 |
| Msa0658890 | Msa1308870 | 0.829415 | 5.213141e-55 | -8.615850e-47 |
| Msa0658890 | Msa1313280 | 0.844908 | 5.648473e-59 | -8.615850e-47 |
| Msa0658890 | Msa1325410 | -0.800801 | 1.215632e-48 | -8.615850e-47 |
| Msa0658890 | Msa1329200 | 0.808237 | 3.418743e-50 | -8.615850e-47 |
| Msa0658890 | Msa1331000 | 0.811788 | 5.875658e-51 | -8.615850e-47 |
| Msa0658890 | Msa1335540 | 0.813443 | 2.553180e-51 | -8.615850e-47 |
| Msa0658890 | Msa1336290 | 0.830803 | 2.391002e-55 | -8.615850e-47 |
| Msa0658890 | Msa1346840 | 0.842756 | 2.129625e-58 | -8.615850e-47 |
| Msa0658890 | Msa1358500 | 0.924955 | 3.520813e-90 | -8.615850e-47 |
| Msa0658890 | Msa1393570 | 0.809734 | 1.634592e-50 | -8.615850e-47 |
| Msa0658890 | Msa1394380 | 0.801270 | 9.744663e-49 | -8.615850e-47 |
| Msa0658890 | Msa1401990 | 0.813628 | 2.324675e-51 | -8.615850e-47 |
| Msa0658890 | Msa1419690 | 0.808788 | 2.607356e-50 | -8.615850e-47 |
| Msa0658890 | Msa1448560 | 0.822311 | 2.535554e-53 | -8.615850e-47 |
| Msa0658890 | Msa1452710 | 0.818349 | 2.053793e-52 | -8.615850e-47 |
| Msa0658890 | Msa1454620 | 0.801960 | 7.034468e-49 | -8.615850e-47 |
| Msa0658890 | Msa1458680 | 0.805267 | 1.450006e-49 | -8.615850e-47 |
| Msa0658890 | Msa1463900 | 0.825565 | 4.373281e-54 | -8.615850e-47 |
| Msa0123000 | Msa0658890 | -0.812848 | 3.447913e-51 | -8.615850e-47 |
| Msa0138020 | Msa0658890 | 0.810857 | 9.355436e-51 | -8.615850e-47 |
| Msa0148080 | Msa0658890 | 0.823971 | 1.039261e-53 | -8.615850e-47 |
| Msa0218370 | Msa0658890 | 0.802887 | 4.531523e-49 | -8.615850e-47 |
| Msa0219590 | Msa0658890 | 0.826516 | 2.598949e-54 | -8.615850e-47 |
| Msa0231060 | Msa0658890 | 0.812267 | 4.620498e-51 | -8.615850e-47 |
| Msa0395750 | Msa0658890 | 0.803947 | 2.733764e-49 | -8.615850e-47 |
| Msa0398670 | Msa0658890 | 0.808950 | 2.406840e-50 | -8.615850e-47 |
| Msa0430420 | Msa0658890 | 0.804758 | 1.852400e-49 | -8.615850e-47 |
| Msa0434180 | Msa0658890 | 0.810352 | 1.202695e-50 | -8.615850e-47 |
| Msa0454360 | Msa0658890 | 0.800711 | 1.267802e-48 | -8.615850e-47 |
| Msa0467410 | Msa0658890 | 0.806552 | 7.781026e-50 | -8.615850e-47 |
| Msa0240920 | Msa0658890 | 0.806309 | 8.756786e-50 | -8.615850e-47 |
| Msa0241140 | Msa0658890 | 0.833152 | 6.283354e-56 | -8.615850e-47 |
| Msa0270580 | Msa0658890 | 0.804240 | 2.375712e-49 | -8.615850e-47 |
| Msa0271510 | Msa0658890 | 0.805239 | 1.469510e-49 | -8.615850e-47 |
| Msa0287870 | Msa0658890 | 0.810966 | 8.863664e-51 | -8.615850e-47 |
| Msa0305410 | Msa0658890 | 0.826700 | 2.349274e-54 | -8.615850e-47 |
| Msa0316390 | Msa0658890 | 0.802804 | 4.714246e-49 | -8.615850e-47 |
| Msa0318680 | Msa0658890 | 0.835243 | 1.879662e-56 | -8.615850e-47 |
| Msa0535630 | Msa0658890 | 0.800789 | 1.222018e-48 | -8.615850e-47 |
| Msa0568660 | Msa0658890 | 0.816631 | 5.007040e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658890 | MtrunA17_Chr8g0383571 | 96.818 | 440 | 14 | 0 | 38 | 477 | 2 | 441 | 0.0 | 870 |
| Msa0658890 | MtrunA17_Chr8g0383531 | 96.119 | 438 | 17 | 0 | 40 | 477 | 1 | 438 | 0.0 | 863 |
| Msa0658890 | MtrunA17_Chr5g0431161 | 47.253 | 91 | 48 | 0 | 137 | 227 | 35 | 125 | 2.43e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658890 | AT5G09900.2 | 79.545 | 440 | 89 | 1 | 38 | 476 | 2 | 441 | 0.0 | 708 |
| Msa0658890 | AT5G09900.1 | 80.000 | 435 | 86 | 1 | 43 | 476 | 7 | 441 | 0.0 | 704 |
| Msa0658890 | AT5G64760.2 | 76.591 | 440 | 102 | 1 | 38 | 476 | 2 | 441 | 0.0 | 677 |
| Msa0658890 | AT5G64760.1 | 77.241 | 435 | 98 | 1 | 43 | 476 | 7 | 441 | 0.0 | 676 |
| Msa0658890 | AT5G64760.3 | 77.910 | 421 | 92 | 1 | 57 | 476 | 1 | 421 | 0.0 | 660 |
| Msa0658890 | AT5G09900.3 | 78.107 | 338 | 73 | 1 | 43 | 379 | 7 | 344 | 0.0 | 530 |
Find 114 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCATAGTTCATGATTT+TGG | 0.116538 | 4_3:+69064186 | Msa0658890:three_prime_UTR |
| TTATCTTTCTTGAGAGTATT+TGG | 0.210165 | 4_3:-69060812 | None:intergenic |
| GACCATATTATCACCTTCTT+TGG | 0.222140 | 4_3:-69060880 | None:intergenic |
| AAACCCGAAGGCCATGAATT+TGG | 0.244287 | 4_3:+69064021 | Msa0658890:three_prime_UTR |
| TGAAATTTGCCGCTGCTATA+AGG | 0.251024 | 4_3:+69062566 | Msa0658890:CDS |
| GTTATTCTTCAATTTCATTA+TGG | 0.255010 | 4_3:-69063995 | None:intergenic |
| TTGAAAAGCAGTTATATTAT+AGG | 0.288845 | 4_3:-69059655 | None:intergenic |
| TTCTCCAAATTCATGGCCTT+CGG | 0.293647 | 4_3:-69064025 | None:intergenic |
| CGTTGCTATCCTTTGCTGTT+TGG | 0.293818 | 4_3:-69063627 | None:intergenic |
| TATCTTTCTTGAGAGTATTT+GGG | 0.303298 | 4_3:-69060811 | None:intergenic |
| CTTAAGCTGGCCGCGTCGTT+TGG | 0.310516 | 4_3:-69059859 | None:intergenic |
| CCCCTGTATTTCATTTATCT+TGG | 0.315629 | 4_3:-69060434 | None:intergenic |
| AGGATAACATACTGGAAGTT+TGG | 0.319003 | 4_3:-69062855 | None:intergenic |
| TCATCCAATGGACAGCTCTT+TGG | 0.322854 | 4_3:+69063000 | Msa0658890:CDS |
| AATCATGAACTATGATAAAC+AGG | 0.324450 | 4_3:-69064182 | None:intergenic |
| TCTTATCAGGTGGAAACTTT+TGG | 0.328587 | 4_3:+69060605 | Msa0658890:intron |
| TGAAAAGCAGTTATATTATA+GGG | 0.330017 | 4_3:-69059654 | None:intergenic |
| CATCCAATGGACAGCTCTTT+GGG | 0.333432 | 4_3:+69063001 | Msa0658890:CDS |
| ACCATATTATCACCTTCTTT+GGG | 0.346638 | 4_3:-69060879 | None:intergenic |
| ATGGACTGAAGTTGCGTTAC+GGG | 0.353737 | 4_3:+69063915 | Msa0658890:three_prime_UTR |
| GGGCTCCTCAATATGTGATA+TGG | 0.363610 | 4_3:+69063896 | Msa0658890:three_prime_UTR |
| GAGAGTACCGTGGTTTCGTT+TGG | 0.367636 | 4_3:-69059588 | None:intergenic |
| TGCCAAGATAAATGAAATAC+AGG | 0.384299 | 4_3:+69060432 | Msa0658890:CDS |
| TCTCCAAATTCATGGCCTTC+GGG | 0.391544 | 4_3:-69064024 | None:intergenic |
| ATTCGACATAGATGCATCTA+AGG | 0.393010 | 4_3:+69060845 | Msa0658890:CDS |
| TAACTCGTGGGCAGCAAACT+TGG | 0.397845 | 4_3:+69063657 | Msa0658890:CDS |
| TTCTGATCCCCTTTCTCGAT+CGG | 0.403091 | 4_3:+69059614 | Msa0658890:CDS |
| AGATCAGACGGCGAAATTGC+CGG | 0.404288 | 4_3:+69059750 | Msa0658890:CDS |
| TGCTGATATTCCATCTCTAC+TGG | 0.412149 | 4_3:+69060914 | Msa0658890:CDS |
| GCCCAAAGAAGGTGATAATA+TGG | 0.427248 | 4_3:+69060878 | Msa0658890:CDS |
| TCAATACGAGTTTCAACATC+TGG | 0.427862 | 4_3:-69060222 | None:intergenic |
| TTCAAGATAATCATTGTTGT+GGG | 0.433017 | 4_3:-69062547 | None:intergenic |
| CAATATATTGCATAGCCTGC+TGG | 0.433604 | 4_3:-69060191 | None:intergenic |
| GCATCTATGTCGAATACTCT+TGG | 0.433663 | 4_3:-69060837 | None:intergenic |
| TTTGACAATGAGATGGTCTA+TGG | 0.435499 | 4_3:+69063041 | Msa0658890:CDS |
| GGTTCATAAAGCAGCTTTGA+AGG | 0.436788 | 4_3:+69063735 | Msa0658890:CDS |
| GGACATGATCCTGGCGGTCT+AGG | 0.445916 | 4_3:-69060785 | None:intergenic |
| CAAGGTTGAATTTAAAAGAC+TGG | 0.454946 | 4_3:-69062808 | None:intergenic |
| ACTATTACGAGCTAATGATT+AGG | 0.458857 | 4_3:+69060949 | Msa0658890:CDS |
| TCTGCTTTGAAGCCAAAGCC+TGG | 0.465047 | 4_3:+69059805 | Msa0658890:CDS |
| CACATGCACCGATCGAGAAA+GGG | 0.468426 | 4_3:-69059622 | None:intergenic |
| TTTCAAGATAATCATTGTTG+TGG | 0.472189 | 4_3:-69062548 | None:intergenic |
| AGAGTACCGTGGTTTCGTTT+GGG | 0.481109 | 4_3:-69059587 | None:intergenic |
| TATGGTTGTTACCAAGGCTC+TGG | 0.483429 | 4_3:+69063567 | Msa0658890:CDS |
| ACACATGCACCGATCGAGAA+AGG | 0.484464 | 4_3:-69059623 | None:intergenic |
| GGAGAAGATGCTTGATCTTG+TGG | 0.492893 | 4_3:+69063678 | Msa0658890:CDS |
| CATCTATGTCGAATACTCTT+GGG | 0.496534 | 4_3:-69060836 | None:intergenic |
| TATGGACTGAAGTTGCGTTA+CGG | 0.502043 | 4_3:+69063914 | Msa0658890:three_prime_UTR |
| TTTGGGCACGGACATGATCC+TGG | 0.504121 | 4_3:-69060794 | None:intergenic |
| AATCTTTGCAACCAGAGCCT+TGG | 0.507062 | 4_3:-69063578 | None:intergenic |
| GCAAAGATTGACAGACCAAT+GGG | 0.508334 | 4_3:+69063592 | Msa0658890:CDS |
| TCGACTCTGCCTAGACCGCC+AGG | 0.509366 | 4_3:+69060776 | Msa0658890:CDS |
| CAACTGGTACCTGCTTAAGC+TGG | 0.513972 | 4_3:-69059872 | None:intergenic |
| TGCTTCAACTCCAGTAGAGA+TGG | 0.518855 | 4_3:-69060924 | None:intergenic |
| GCAGCTTTGAAGGTTTAAGA+AGG | 0.527483 | 4_3:+69063745 | Msa0658890:exon |
| TCTCCCAAAGAGCTGTCCAT+TGG | 0.527502 | 4_3:-69063004 | None:intergenic |
| TGTGACAGCGATGGTCCAGC+AGG | 0.529317 | 4_3:+69060176 | Msa0658890:CDS |
| ACATTGAACAGTGTATCTGC+TGG | 0.532773 | 4_3:+69060255 | Msa0658890:CDS |
| TGAGATTGAGAGAGCAAGGT+TGG | 0.535070 | 4_3:+69060399 | Msa0658890:CDS |
| TTGCATCAAATCAGCAGCCT+CGG | 0.540212 | 4_3:-69060464 | None:intergenic |
| CAAAGCTGCTTTATGAACCA+TGG | 0.543033 | 4_3:-69063731 | None:intergenic |
| AGTAGAGATGGAATATCAGC+AGG | 0.547557 | 4_3:-69060912 | None:intergenic |
| ACGACGCGGCCAGCTTAAGC+AGG | 0.547759 | 4_3:+69059863 | Msa0658890:CDS |
| TGAAATGTTGCTCACTGTGT+TGG | 0.548481 | 4_3:+69063948 | Msa0658890:three_prime_UTR |
| CCTGGAAAACGCTAAATGAC+CGG | 0.549585 | 4_3:+69059823 | Msa0658890:CDS |
| GCATCACCAAGTGACTTGTC+AGG | 0.549622 | 4_3:-69064238 | None:intergenic |
| GAAGCTGAGAAGCATCTGTC+CGG | 0.552717 | 4_3:+69063544 | Msa0658890:CDS |
| CCTACAGGAATAAAATCAGC+AGG | 0.555937 | 4_3:-69062621 | None:intergenic |
| TGGAAACAGACTATTCCCAT+TGG | 0.557174 | 4_3:-69063607 | None:intergenic |
| TGCAAAGATTGACAGACCAA+TGG | 0.572504 | 4_3:+69063591 | Msa0658890:CDS |
| TGAGAAGCATCTGTCCGGTA+TGG | 0.572589 | 4_3:+69063549 | Msa0658890:CDS |
| GAGGAAAATATGTTGGTGCT+TGG | 0.574826 | 4_3:+69062758 | Msa0658890:CDS |
| GTCCGGTATGGTTGTTACCA+AGG | 0.577395 | 4_3:+69063561 | Msa0658890:CDS |
| GCAACGATGTTCTTAACTCG+TGG | 0.578239 | 4_3:+69063644 | Msa0658890:CDS |
| AGATAGATTTCTATCCTCCA+AGG | 0.578867 | 4_3:-69062826 | None:intergenic |
| ATCAGTCCTGACAAGTCACT+TGG | 0.585955 | 4_3:+69064232 | Msa0658890:three_prime_UTR |
| TTCTTGAGAGTATTTGGGCA+CGG | 0.586277 | 4_3:-69060806 | None:intergenic |
| ACGTTGAGATTGAGAGAGCA+AGG | 0.591447 | 4_3:+69060395 | Msa0658890:CDS |
| GTTTGGACAAAACGACAATC+CGG | 0.595842 | 4_3:-69059842 | None:intergenic |
| AAGAATAACATTAAACCCGA+AGG | 0.597208 | 4_3:+69064009 | Msa0658890:three_prime_UTR |
| TTTAAAAGACTGGACTGCAT+CGG | 0.598019 | 4_3:-69062798 | None:intergenic |
| CATTGAACAGTGTATCTGCT+GGG | 0.598121 | 4_3:+69060256 | Msa0658890:CDS |
| AGATCCTGAGGAAAATATGT+TGG | 0.600984 | 4_3:+69062751 | Msa0658890:intron |
| TTTGAAGCAGCTGGTCACCA+TGG | 0.604172 | 4_3:+69062974 | Msa0658890:CDS |
| AGCCTTGGTAACAACCATAC+CGG | 0.606298 | 4_3:-69063563 | None:intergenic |
| CAACGATGTTCTTAACTCGT+GGG | 0.607448 | 4_3:+69063645 | Msa0658890:CDS |
| GCCAAGATAAATGAAATACA+GGG | 0.610611 | 4_3:+69060433 | Msa0658890:CDS |
| CATATATTGCCTTATAGCAG+CGG | 0.613022 | 4_3:-69062575 | None:intergenic |
| TCAGTCCATATCACATATTG+AGG | 0.615157 | 4_3:-69063901 | None:intergenic |
| AGGTGATAATATGGTCGAAG+AGG | 0.618539 | 4_3:+69060887 | Msa0658890:CDS |
| GAATGAGTTTGACAATGAGA+TGG | 0.628221 | 4_3:+69063034 | Msa0658890:CDS |
| ACATGCACCGATCGAGAAAG+GGG | 0.628677 | 4_3:-69059621 | None:intergenic |
| TCACCATGGAAGTCATCCAA+TGG | 0.630891 | 4_3:+69062988 | Msa0658890:CDS |
| GAACAGTGTATCTGCTGGGA+AGG | 0.631990 | 4_3:+69060260 | Msa0658890:CDS |
| AGTCTGTTTCCAAACAGCAA+AGG | 0.634017 | 4_3:+69063618 | Msa0658890:CDS |
| CTGGACTGCATCGGTGAATG+TGG | 0.634478 | 4_3:-69062789 | None:intergenic |
| GAGTTGCAAGATATCGATTG+CGG | 0.635622 | 4_3:-69059784 | None:intergenic |
| GTTCTTACATACAGATCCTG+AGG | 0.637665 | 4_3:+69062739 | Msa0658890:intron |
| TCAAATACACAAGGAAACCA+TGG | 0.640379 | 4_3:+69063714 | Msa0658890:CDS |
| GAGAAGCAGATGAGATCAGA+CGG | 0.646168 | 4_3:+69059738 | Msa0658890:CDS |
| TGATTTGATGCAAGAAATTG+CGG | 0.655673 | 4_3:+69060474 | Msa0658890:CDS |
| CCAAGATAAATGAAATACAG+GGG | 0.668491 | 4_3:+69060434 | Msa0658890:CDS |
| TGTTGCTCACTGTGTTGGTG+AGG | 0.668735 | 4_3:+69063953 | Msa0658890:three_prime_UTR |
| CATGCAGGCTGTGACAGCGA+TGG | 0.669127 | 4_3:+69060167 | Msa0658890:intron |
| TGGACTGAAGTTGCGTTACG+GGG | 0.669937 | 4_3:+69063916 | Msa0658890:three_prime_UTR |
| GAGCTGTCATCAAATACACA+AGG | 0.670564 | 4_3:+69063705 | Msa0658890:CDS |
| GTTTATCCCAAACGAAACCA+CGG | 0.688822 | 4_3:+69059581 | Msa0658890:CDS |
| TGTCCATTGGATGACTTCCA+TGG | 0.689019 | 4_3:-69062991 | None:intergenic |
| ATCATGAACTATGATAAACA+GGG | 0.720875 | 4_3:-69064181 | None:intergenic |
| GAAAATATTAGCAACCACAG+TGG | 0.730711 | 4_3:-69064125 | None:intergenic |
| AAGTTGAAATAAGAAGCTGA+CGG | 0.731176 | 4_3:+69064079 | Msa0658890:three_prime_UTR |
| GGGCACGGACATGATCCTGG+CGG | 0.747981 | 4_3:-69060791 | None:intergenic |
| ATCAGAAATAGAGAGTACCG+TGG | 0.765081 | 4_3:-69059598 | None:intergenic |
| AGTTTGAAGAGAAGCCACTG+TGG | 0.795391 | 4_3:+69064111 | Msa0658890:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAATAAAATAAGA+TGG | - | chr4_3:69063485-69063504 | None:intergenic | 10.0% |
| !!! | ATGCTTATTTTTTTTTTTTT+TGG | + | chr4_3:69064257-69064276 | Msa0658890:three_prime_UTR | 10.0% |
| !!! | TGCTTATTTTTTTTTTTTTT+GGG | + | chr4_3:69064258-69064277 | Msa0658890:three_prime_UTR | 10.0% |
| !!! | TTTTAAAATAGATTATGCTA+TGG | - | chr4_3:69060330-69060349 | None:intergenic | 15.0% |
| !!! | ATATATCTTTTTTTCGTTTT+TGG | + | chr4_3:69060531-69060550 | Msa0658890:intron | 15.0% |
| !! | GTTTGTATAAAATAAACTAA+AGG | - | chr4_3:69061068-69061087 | None:intergenic | 15.0% |
| !!! | TTTGGTTTTTATATTCAAAT+AGG | - | chr4_3:69061175-69061194 | None:intergenic | 15.0% |
| !!! | TAATTAACTGTTTTAATTCT+TGG | + | chr4_3:69061516-69061535 | Msa0658890:intron | 15.0% |
| !! | TACTATAAGATTATGTTATA+CGG | + | chr4_3:69062678-69062697 | Msa0658890:intron | 15.0% |
| !!! | ATATTTTAACATGATTAGAA+AGG | - | chr4_3:69062897-69062916 | None:intergenic | 15.0% |
| !!! | ACTTTAATAACTTTTTCTTA+TGG | + | chr4_3:69063321-69063340 | Msa0658890:intron | 15.0% |
| !! | ATATTCATATTGCTTATTTA+TGG | + | chr4_3:69063863-69063882 | Msa0658890:intron | 15.0% |
| !! | CTGATCTTTAAATTTAAAAA+TGG | - | chr4_3:69064217-69064236 | None:intergenic | 15.0% |
| !! | TGAAAAGCAGTTATATTATA+GGG | - | chr4_3:69059657-69059676 | None:intergenic | 20.0% |
| !! | TTGAAAAGCAGTTATATTAT+AGG | - | chr4_3:69059658-69059677 | None:intergenic | 20.0% |
| !!! | CTAAAATCTTTTAAACCTAA+CGG | - | chr4_3:69059935-69059954 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCCGTTTAGAT+TGG | + | chr4_3:69059958-69059977 | Msa0658890:intron | 20.0% |
| !! | AATTGTTTGCTTAAAATGAT+TGG | + | chr4_3:69059982-69060001 | Msa0658890:intron | 20.0% |
| !!! | TTAAAATGATTGGTTTGTTT+AGG | + | chr4_3:69059992-69060011 | Msa0658890:intron | 20.0% |
| !!! | TAAAATGATTGGTTTGTTTA+GGG | + | chr4_3:69059993-69060012 | Msa0658890:intron | 20.0% |
| !! | GATTAGTACAAATTATTGTT+TGG | + | chr4_3:69060562-69060581 | Msa0658890:intron | 20.0% |
| !! | AAACTAAAATATAGAAAACC+AGG | - | chr4_3:69061119-69061138 | None:intergenic | 20.0% |
| !!! | TTTAGTTTCATTAACTTTTG+AGG | + | chr4_3:69061131-69061150 | Msa0658890:intron | 20.0% |
| !!! | GATTCTAAAATTAACAGTAT+AGG | - | chr4_3:69061215-69061234 | None:intergenic | 20.0% |
| !!! | ATTTTAGAATCTGAAAGATA+AGG | + | chr4_3:69061224-69061243 | Msa0658890:intron | 20.0% |
| !! | ACAGTTAATTAAAAACTTGT+TGG | - | chr4_3:69061507-69061526 | None:intergenic | 20.0% |
| !! | CAATTTGATATTTAGTAACA+AGG | - | chr4_3:69061588-69061607 | None:intergenic | 20.0% |
| !!! | TATTTATGGATTATTAGAGT+GGG | + | chr4_3:69061674-69061693 | Msa0658890:intron | 20.0% |
| !! | TTTCAAAATAGTTAAGAACT+GGG | - | chr4_3:69061908-69061927 | None:intergenic | 20.0% |
| !! | CTCGTTTATAAAATTCTAAA+TGG | - | chr4_3:69062000-69062019 | None:intergenic | 20.0% |
| !!! | CATTTAGAATTTTATAAACG+AGG | + | chr4_3:69061998-69062017 | Msa0658890:intron | 20.0% |
| !!! | ATTTTTTAGAACAGTATCAA+TGG | - | chr4_3:69062117-69062136 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTGTAAGGAATT+CGG | - | chr4_3:69063130-69063149 | None:intergenic | 20.0% |
| !!! | GAAACATAAAAAAAAGTGTA+AGG | - | chr4_3:69063137-69063156 | None:intergenic | 20.0% |
| !!! | AATAACTTTTTCTTATGGTT+TGG | + | chr4_3:69063326-69063345 | Msa0658890:intron | 20.0% |
| !!! | ATAACTTTTTCTTATGGTTT+GGG | + | chr4_3:69063327-69063346 | Msa0658890:intron | 20.0% |
| !! | TTAAAGAAAAACTATATCCT+TGG | + | chr4_3:69063360-69063379 | Msa0658890:intron | 20.0% |
| !! | GTTATTCTTCAATTTCATTA+TGG | - | chr4_3:69063998-69064017 | None:intergenic | 20.0% |
| !!! | TTTATCATAGTTCATGATTT+TGG | + | chr4_3:69064186-69064205 | Msa0658890:three_prime_UTR | 20.0% |
| !!! | TTATCATAGTTCATGATTTT+GGG | + | chr4_3:69064187-69064206 | Msa0658890:three_prime_UTR | 20.0% |
| !! | CGTTAGGTTTAAAAGATTTT+AGG | + | chr4_3:69059933-69059952 | Msa0658890:intron | 25.0% |
| ! | CAAACAATTTCCAATCTAAA+CGG | - | chr4_3:69059971-69059990 | None:intergenic | 25.0% |
| !!! | GCTTTAAACTCTAAAATGAT+TGG | + | chr4_3:69060025-69060044 | Msa0658890:intron | 25.0% |
| ! | TTTGTATGATTGGTACAAAA+AGG | + | chr4_3:69060119-69060138 | Msa0658890:intron | 25.0% |
| ! | TCTTCTATGTTAAATTGTGT+AGG | + | chr4_3:69060752-69060771 | Msa0658890:intron | 25.0% |
| !!! | TATCTTTCTTGAGAGTATTT+GGG | - | chr4_3:69060814-69060833 | None:intergenic | 25.0% |
| !!! | TTATCTTTCTTGAGAGTATT+TGG | - | chr4_3:69060815-69060834 | None:intergenic | 25.0% |
| ! | AAGAAATACTACAACTAAAC+AGG | - | chr4_3:69060992-69061011 | None:intergenic | 25.0% |
| !! | CTCCTTTTTATCTATATCTA+CGG | + | chr4_3:69061396-69061415 | Msa0658890:intron | 25.0% |
| !! | TCCTTTTTATCTATATCTAC+GGG | + | chr4_3:69061397-69061416 | Msa0658890:intron | 25.0% |
| !! | TTTTCTATATTACGTAAGTG+CGG | + | chr4_3:69061449-69061468 | Msa0658890:intron | 25.0% |
| !!! | TGTTTTAATTCTTGGTTTGA+TGG | + | chr4_3:69061524-69061543 | Msa0658890:intron | 25.0% |
| !! | GTATTTATGGATTATTAGAG+TGG | + | chr4_3:69061673-69061692 | Msa0658890:intron | 25.0% |
| ! | AGAAGTAAGTGATTAAAATG+TGG | - | chr4_3:69061821-69061840 | None:intergenic | 25.0% |
| !! | AACTTTGGAAATTTAGGAAT+CGG | - | chr4_3:69061846-69061865 | None:intergenic | 25.0% |
| !! | ATGGATAACTTTGGAAATTT+AGG | - | chr4_3:69061852-69061871 | None:intergenic | 25.0% |
| ! | AATGAAAAGTAGAGATGAAA+TGG | - | chr4_3:69061871-69061890 | None:intergenic | 25.0% |
| ! | GTTTCAAAATAGTTAAGAAC+TGG | - | chr4_3:69061909-69061928 | None:intergenic | 25.0% |
| ! | AGTAATGTAGAGTAAAGAAT+TGG | + | chr4_3:69062300-69062319 | Msa0658890:intron | 25.0% |
| ! | CATAAGGAAAAAAAAAGTCA+GGG | - | chr4_3:69062495-69062514 | None:intergenic | 25.0% |
| ! | TTCAAGATAATCATTGTTGT+GGG | - | chr4_3:69062550-69062569 | None:intergenic | 25.0% |
| ! | TTTCAAGATAATCATTGTTG+TGG | - | chr4_3:69062551-69062570 | None:intergenic | 25.0% |
| ! | CTGTATGTAAGAACAATATT+CGG | - | chr4_3:69062733-69062752 | None:intergenic | 25.0% |
| ! | TGAAAAATAGGATAACATAC+TGG | - | chr4_3:69062866-69062885 | None:intergenic | 25.0% |
| ! | AAGGATGAAAGATGAAAAAT+AGG | - | chr4_3:69062878-69062897 | None:intergenic | 25.0% |
| ! | TACAACAAGAATATTCTGAA+AGG | - | chr4_3:69063200-69063219 | None:intergenic | 25.0% |
| ! | TTATGCACGAGTAATTAATT+AGG | - | chr4_3:69063519-69063538 | None:intergenic | 25.0% |
| ! | ATCATGAACTATGATAAACA+GGG | - | chr4_3:69064184-69064203 | None:intergenic | 25.0% |
| ! | AATCATGAACTATGATAAAC+AGG | - | chr4_3:69064185-69064204 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGGGTGTGAAT+TGG | + | chr4_3:69064268-69064287 | Msa0658890:three_prime_UTR | 25.0% |
| !! | CTTTTTCGTGTTAGGAATTA+GGG | + | chr4_3:69059906-69059925 | Msa0658890:intron | 30.0% |
| !!! | CTGCATCTTTTTTGTATGAT+TGG | + | chr4_3:69060109-69060128 | Msa0658890:intron | 30.0% |
| GCTATTATATATATGCATGC+AGG | + | chr4_3:69060152-69060171 | Msa0658890:intron | 30.0% | |
| GAGAAGATGATAAAACAGTA+TGG | - | chr4_3:69060308-69060327 | None:intergenic | 30.0% | |
| TGCCAAGATAAATGAAATAC+AGG | + | chr4_3:69060432-69060451 | Msa0658890:CDS | 30.0% | |
| GCCAAGATAAATGAAATACA+GGG | + | chr4_3:69060433-69060452 | Msa0658890:CDS | 30.0% | |
| CCAAGATAAATGAAATACAG+GGG | + | chr4_3:69060434-69060453 | Msa0658890:CDS | 30.0% | |
| TGATTTGATGCAAGAAATTG+CGG | + | chr4_3:69060474-69060493 | Msa0658890:CDS | 30.0% | |
| ! | TGTTTGGTTTACTTATGTGA+TGG | + | chr4_3:69060578-69060597 | Msa0658890:intron | 30.0% |
| ! | GTTTGGTTTACTTATGTGAT+GGG | + | chr4_3:69060579-69060598 | Msa0658890:intron | 30.0% |
| ! | AATTTTCTCAGTTTTTGCCA+TGG | - | chr4_3:69060633-69060652 | None:intergenic | 30.0% |
| ACCATATTATCACCTTCTTT+GGG | - | chr4_3:69060882-69060901 | None:intergenic | 30.0% | |
| ACTATTACGAGCTAATGATT+AGG | + | chr4_3:69060949-69060968 | Msa0658890:CDS | 30.0% | |
| GTAGATACTCTAAATTATCC+TGG | + | chr4_3:69061098-69061117 | Msa0658890:intron | 30.0% | |
| CGTAGATATAGATAAAAAGG+AGG | - | chr4_3:69061398-69061417 | None:intergenic | 30.0% | |
| TCCCGTAGATATAGATAAAA+AGG | - | chr4_3:69061401-69061420 | None:intergenic | 30.0% | |
| !! | CTATGATTTGTTTCTATGCT+TGG | + | chr4_3:69061421-69061440 | Msa0658890:intron | 30.0% |
| ! | GCTAACTTGTACTGTATTTA+TGG | + | chr4_3:69061660-69061679 | Msa0658890:intron | 30.0% |
| AGAGATGAAATGGATAACTT+TGG | - | chr4_3:69061861-69061880 | None:intergenic | 30.0% | |
| TAAAGCTTGAATAAACTTGC+TGG | + | chr4_3:69062050-69062069 | Msa0658890:intron | 30.0% | |
| !! | TTGAATAAACTTGCTGGATT+TGG | + | chr4_3:69062056-69062075 | Msa0658890:intron | 30.0% |
| AGTATCAATGGTAAAAGACA+AGG | - | chr4_3:69062105-69062124 | None:intergenic | 30.0% | |
| AGCAGCATAAATATAAACGA+CGG | - | chr4_3:69062220-69062239 | None:intergenic | 30.0% | |
| AGTCCTGTTTATTTGTGTTT+GGG | + | chr4_3:69062249-69062268 | Msa0658890:intron | 30.0% | |
| !! | CTACATATTTTTCTAGTACC+TGG | + | chr4_3:69062446-69062465 | Msa0658890:intron | 30.0% |
| AGTAAGAAATATCATGAACC+AGG | - | chr4_3:69062467-69062486 | None:intergenic | 30.0% | |
| GCATAAGGAAAAAAAAAGTC+AGG | - | chr4_3:69062496-69062515 | None:intergenic | 30.0% | |
| !!! | GACTTTTTTTTTCCTTATGC+TGG | + | chr4_3:69062496-69062515 | Msa0658890:intron | 30.0% |
| CAAGGTTGAATTTAAAAGAC+TGG | - | chr4_3:69062811-69062830 | None:intergenic | 30.0% | |
| ! | CAGTCTTTTAAATTCAACCT+TGG | + | chr4_3:69062809-69062828 | Msa0658890:CDS | 30.0% |
| ! | TCTTTTAAATTCAACCTTGG+AGG | + | chr4_3:69062812-69062831 | Msa0658890:CDS | 30.0% |
| ! | TGTTTAGAATTCCTTGTCAT+TGG | + | chr4_3:69062919-69062938 | Msa0658890:intron | 30.0% |
| ! | GTTTAGAATTCCTTGTCATT+GGG | + | chr4_3:69062920-69062939 | Msa0658890:intron | 30.0% |
| TAACAGAACAAAACCATAAC+TGG | - | chr4_3:69063296-69063315 | None:intergenic | 30.0% | |
| AAATAAGATGGAAGACCAAT+AGG | - | chr4_3:69063473-69063492 | None:intergenic | 30.0% | |
| TAATTACTCGTGCATAATTC+AGG | + | chr4_3:69063522-69063541 | Msa0658890:intron | 30.0% | |
| ! | GTTTAGAGAGATTTTCTCAA+TGG | + | chr4_3:69063812-69063831 | Msa0658890:intron | 30.0% |
| TGCTTATTTATGGTCATTTC+AGG | + | chr4_3:69063873-69063892 | Msa0658890:intron | 30.0% | |
| GCTTATTTATGGTCATTTCA+GGG | + | chr4_3:69063874-69063893 | Msa0658890:intron | 30.0% | |
| CTTATTTATGGTCATTTCAG+GGG | + | chr4_3:69063875-69063894 | Msa0658890:intron | 30.0% | |
| TTATTTATGGTCATTTCAGG+GGG | + | chr4_3:69063876-69063895 | Msa0658890:intron | 30.0% | |
| AAGAATAACATTAAACCCGA+AGG | + | chr4_3:69064009-69064028 | Msa0658890:three_prime_UTR | 30.0% | |
| !!! | CTTTTAGTTCTCCAAATTCA+TGG | - | chr4_3:69064035-69064054 | None:intergenic | 30.0% |
| AAGTTGAAATAAGAAGCTGA+CGG | + | chr4_3:69064079-69064098 | Msa0658890:three_prime_UTR | 30.0% | |
| ! | TGCTTTTCAATTCGTTTTGC+AGG | + | chr4_3:69059668-69059687 | Msa0658890:CDS | 35.0% |
| !! | AAAAGGCATCAATTTGCAAC+TGG | - | chr4_3:69059891-69059910 | None:intergenic | 35.0% |
| !! | ATTGATGCCTTTTTCGTGTT+AGG | + | chr4_3:69059898-69059917 | Msa0658890:intron | 35.0% |
| CCTAATTCCTAACACGAAAA+AGG | - | chr4_3:69059908-69059927 | None:intergenic | 35.0% | |
| !! | CCTTTTTCGTGTTAGGAATT+AGG | + | chr4_3:69059905-69059924 | Msa0658890:intron | 35.0% |
| ! | TCTAAAATGATTGGTGCAGT+TGG | + | chr4_3:69060034-69060053 | Msa0658890:intron | 35.0% |
| !! | GGTACAAAAAGGTATTAACG+AGG | + | chr4_3:69060130-69060149 | Msa0658890:intron | 35.0% |
| TCAATACGAGTTTCAACATC+TGG | - | chr4_3:69060225-69060244 | None:intergenic | 35.0% | |
| CCCCTGTATTTCATTTATCT+TGG | - | chr4_3:69060437-69060456 | None:intergenic | 35.0% | |
| !! | ATGTGATGGGTAATCTTATC+AGG | + | chr4_3:69060592-69060611 | Msa0658890:intron | 35.0% |
| ! | TCTTATCAGGTGGAAACTTT+TGG | + | chr4_3:69060605-69060624 | Msa0658890:intron | 35.0% |
| CATCTATGTCGAATACTCTT+GGG | - | chr4_3:69060839-69060858 | None:intergenic | 35.0% | |
| ATTCGACATAGATGCATCTA+AGG | + | chr4_3:69060845-69060864 | Msa0658890:CDS | 35.0% | |
| GAAAAGAAAAAGCCCAAAGA+AGG | + | chr4_3:69060867-69060886 | Msa0658890:CDS | 35.0% | |
| GACCATATTATCACCTTCTT+TGG | - | chr4_3:69060883-69060902 | None:intergenic | 35.0% | |
| ! | ACTAGTAGTTACAAGTACTG+TGG | + | chr4_3:69061021-69061040 | Msa0658890:intron | 35.0% |
| ! | TGTGGCTTGACTTTGTATTT+TGG | + | chr4_3:69061039-69061058 | Msa0658890:intron | 35.0% |
| GACATTCATGCATCATTGTT+TGG | - | chr4_3:69061193-69061212 | None:intergenic | 35.0% | |
| TAAAATTGCAGTCAGACAGA+CGG | - | chr4_3:69061264-69061283 | None:intergenic | 35.0% | |
| AATTTGAGTAAACGCAAGCA+AGG | - | chr4_3:69061328-69061347 | None:intergenic | 35.0% | |
| TATATTACGTAAGTGCGGAT+TGG | + | chr4_3:69061454-69061473 | Msa0658890:intron | 35.0% | |
| CCTAAGAAACTTGGATTGTT+AGG | - | chr4_3:69061638-69061657 | None:intergenic | 35.0% | |
| CCTAACAATCCAAGTTTCTT+AGG | + | chr4_3:69061635-69061654 | Msa0658890:intron | 35.0% | |
| AGTTAGCTACCTAAGAAACT+TGG | - | chr4_3:69061647-69061666 | None:intergenic | 35.0% | |
| ! | TTATGGATTATTAGAGTGGG+AGG | + | chr4_3:69061677-69061696 | Msa0658890:intron | 35.0% |
| TGGTTATCCTTCCTAACATT+TGG | + | chr4_3:69062076-69062095 | Msa0658890:intron | 35.0% | |
| AAGGAATCCAAATGTTAGGA+AGG | - | chr4_3:69062086-69062105 | None:intergenic | 35.0% | |
| AGACAAGGAATCCAAATGTT+AGG | - | chr4_3:69062090-69062109 | None:intergenic | 35.0% | |
| !! | AAACGACGGTTGATAAGAAT+TGG | - | chr4_3:69062206-69062225 | None:intergenic | 35.0% |
| GAGTCCTGTTTATTTGTGTT+TGG | + | chr4_3:69062248-69062267 | Msa0658890:intron | 35.0% | |
| CATCCCAAACACAAATAAAC+AGG | - | chr4_3:69062255-69062274 | None:intergenic | 35.0% | |
| ACCCAAGTTTAGAAAGCTAT+GGG | - | chr4_3:69062356-69062375 | None:intergenic | 35.0% | |
| AACCCAAGTTTAGAAAGCTA+TGG | - | chr4_3:69062357-69062376 | None:intergenic | 35.0% | |
| ! | GGTTTTCTGTCTGTGATTTT+AGG | + | chr4_3:69062517-69062536 | Msa0658890:intron | 35.0% |
| CATATATTGCCTTATAGCAG+CGG | - | chr4_3:69062578-69062597 | None:intergenic | 35.0% | |
| ! | ATCAGCAGGATTTTCTTTGA+TGG | - | chr4_3:69062610-69062629 | None:intergenic | 35.0% |
| AAAGAGAATAGAAAGCCTAC+AGG | - | chr4_3:69062639-69062658 | None:intergenic | 35.0% | |
| AGATCCTGAGGAAAATATGT+TGG | + | chr4_3:69062751-69062770 | Msa0658890:intron | 35.0% | |
| TTTAAAAGACTGGACTGCAT+CGG | - | chr4_3:69062801-69062820 | None:intergenic | 35.0% | |
| AGATAGATTTCTATCCTCCA+AGG | - | chr4_3:69062829-69062848 | None:intergenic | 35.0% | |
| AGGATAACATACTGGAAGTT+TGG | - | chr4_3:69062858-69062877 | None:intergenic | 35.0% | |
| GAATGAGTTTGACAATGAGA+TGG | + | chr4_3:69063034-69063053 | Msa0658890:CDS | 35.0% | |
| TTTGACAATGAGATGGTCTA+TGG | + | chr4_3:69063041-69063060 | Msa0658890:CDS | 35.0% | |
| ACTATATCCTTGGAAAGTGA+AGG | + | chr4_3:69063370-69063389 | Msa0658890:intron | 35.0% | |
| ! | CAACAACTATTTTCACATGC+AGG | - | chr4_3:69063436-69063455 | None:intergenic | 35.0% |
| GTAAACCTGTAACTACCTAT+TGG | + | chr4_3:69063455-69063474 | Msa0658890:intron | 35.0% | |
| TCAAATACACAAGGAAACCA+TGG | + | chr4_3:69063714-69063733 | Msa0658890:CDS | 35.0% | |
| ! | CTTTGAAGGTTTAAGAAGGT+AGG | + | chr4_3:69063749-69063768 | Msa0658890:intron | 35.0% |
| TCAGTCCATATCACATATTG+AGG | - | chr4_3:69063904-69063923 | None:intergenic | 35.0% | |
| GAAAATATTAGCAACCACAG+TGG | - | chr4_3:69064128-69064147 | None:intergenic | 35.0% | |
| GTTTATCCCAAACGAAACCA+CGG | + | chr4_3:69059581-69059600 | Msa0658890:CDS | 40.0% | |
| !! | ATCAGAAATAGAGAGTACCG+TGG | - | chr4_3:69059601-69059620 | None:intergenic | 40.0% |
| ! | ATTCGTTTTGCAGGCAAACA+TGG | + | chr4_3:69059677-69059696 | Msa0658890:CDS | 40.0% |
| ! | GAGTTGCAAGATATCGATTG+CGG | - | chr4_3:69059787-69059806 | None:intergenic | 40.0% |
| ! | ATTTAGCGTTTTCCAGGCTT+TGG | - | chr4_3:69059820-69059839 | None:intergenic | 40.0% |
| GTTTGGACAAAACGACAATC+CGG | - | chr4_3:69059845-69059864 | None:intergenic | 40.0% | |
| TAGGAATTAGGGTTTCCGTT+AGG | + | chr4_3:69059917-69059936 | Msa0658890:intron | 40.0% | |
| CAATATATTGCATAGCCTGC+TGG | - | chr4_3:69060194-69060213 | None:intergenic | 40.0% | |
| ACATTGAACAGTGTATCTGC+TGG | + | chr4_3:69060255-69060274 | Msa0658890:CDS | 40.0% | |
| CATTGAACAGTGTATCTGCT+GGG | + | chr4_3:69060256-69060275 | Msa0658890:CDS | 40.0% | |
| ! | TGATGGGTAATCTTATCAGG+TGG | + | chr4_3:69060595-69060614 | Msa0658890:intron | 40.0% |
| !! | TTCTTGAGAGTATTTGGGCA+CGG | - | chr4_3:69060809-69060828 | None:intergenic | 40.0% |
| GCATCTATGTCGAATACTCT+TGG | - | chr4_3:69060840-69060859 | None:intergenic | 40.0% | |
| GCCCAAAGAAGGTGATAATA+TGG | + | chr4_3:69060878-69060897 | Msa0658890:CDS | 40.0% | |
| AGGTGATAATATGGTCGAAG+AGG | + | chr4_3:69060887-69060906 | Msa0658890:CDS | 40.0% | |
| AGTAGAGATGGAATATCAGC+AGG | - | chr4_3:69060915-69060934 | None:intergenic | 40.0% | |
| TGCTGATATTCCATCTCTAC+TGG | + | chr4_3:69060914-69060933 | Msa0658890:CDS | 40.0% | |
| ! | TGAGGATATGCTTTTGATGC+TGG | + | chr4_3:69061149-69061168 | Msa0658890:intron | 40.0% |
| ! | GCACTGTGATTGGACATTTT+TGG | + | chr4_3:69061763-69061782 | Msa0658890:intron | 40.0% |
| GAGTAAAGAATTGGTCACAG+TGG | + | chr4_3:69062309-69062328 | Msa0658890:intron | 40.0% | |
| TCCCCATAGCTTTCTAAACT+TGG | + | chr4_3:69062351-69062370 | Msa0658890:intron | 40.0% | |
| CCCAAGTTTAGAAAGCTATG+GGG | - | chr4_3:69062355-69062374 | None:intergenic | 40.0% | |
| CCCCATAGCTTTCTAAACTT+GGG | + | chr4_3:69062352-69062371 | Msa0658890:intron | 40.0% | |
| ACAGACAGAAAACCAGCATA+AGG | - | chr4_3:69062511-69062530 | None:intergenic | 40.0% | |
| TGAAATTTGCCGCTGCTATA+AGG | + | chr4_3:69062566-69062585 | Msa0658890:CDS | 40.0% | |
| ! | GCAGGATTTTCTTTGATGGA+CGG | - | chr4_3:69062606-69062625 | None:intergenic | 40.0% |
| CCTACAGGAATAAAATCAGC+AGG | - | chr4_3:69062624-69062643 | None:intergenic | 40.0% | |
| !!! | CCTGCTGATTTTATTCCTGT+AGG | + | chr4_3:69062621-69062640 | Msa0658890:intron | 40.0% |
| GTTCTTACATACAGATCCTG+AGG | + | chr4_3:69062739-69062758 | Msa0658890:intron | 40.0% | |
| ! | AGCACCAACATATTTTCCTC+AGG | - | chr4_3:69062758-69062777 | None:intergenic | 40.0% |
| ! | GAGGAAAATATGTTGGTGCT+TGG | + | chr4_3:69062758-69062777 | Msa0658890:CDS | 40.0% |
| GCCTGTTATATGTTGTGTCT+AGG | + | chr4_3:69062946-69062965 | Msa0658890:intron | 40.0% | |
| GCCTAGACACAACATATAAC+AGG | - | chr4_3:69062950-69062969 | None:intergenic | 40.0% | |
| CTTGGAAAGTGAAGGTAGTA+GGG | + | chr4_3:69063378-69063397 | Msa0658890:intron | 40.0% | |
| TTGGAAAGTGAAGGTAGTAG+GGG | + | chr4_3:69063379-69063398 | Msa0658890:intron | 40.0% | |
| GAAGACCAATAGGTAGTTAC+AGG | - | chr4_3:69063463-69063482 | None:intergenic | 40.0% | |
| TGCAAAGATTGACAGACCAA+TGG | + | chr4_3:69063591-69063610 | Msa0658890:CDS | 40.0% | |
| GCAAAGATTGACAGACCAAT+GGG | + | chr4_3:69063592-69063611 | Msa0658890:CDS | 40.0% | |
| TGGAAACAGACTATTCCCAT+TGG | - | chr4_3:69063610-69063629 | None:intergenic | 40.0% | |
| AGTCTGTTTCCAAACAGCAA+AGG | + | chr4_3:69063618-69063637 | Msa0658890:CDS | 40.0% | |
| CAACGATGTTCTTAACTCGT+GGG | + | chr4_3:69063645-69063664 | Msa0658890:CDS | 40.0% | |
| GAGCTGTCATCAAATACACA+AGG | + | chr4_3:69063705-69063724 | Msa0658890:CDS | 40.0% | |
| ! | CAAAGCTGCTTTATGAACCA+TGG | - | chr4_3:69063734-69063753 | None:intergenic | 40.0% |
| ! | GGTTCATAAAGCAGCTTTGA+AGG | + | chr4_3:69063735-69063754 | Msa0658890:CDS | 40.0% |
| !! | GCAGCTTTGAAGGTTTAAGA+AGG | + | chr4_3:69063745-69063764 | Msa0658890:exon | 40.0% |
| AAGAAGGTAGGTCCATATGT+CGG | + | chr4_3:69063761-69063780 | Msa0658890:intron | 40.0% | |
| TTGAGAAAAGAGCCGACATA+TGG | - | chr4_3:69063776-69063795 | None:intergenic | 40.0% | |
| ! | TATGGACTGAAGTTGCGTTA+CGG | + | chr4_3:69063914-69063933 | Msa0658890:three_prime_UTR | 40.0% |
| TGAAATGTTGCTCACTGTGT+TGG | + | chr4_3:69063948-69063967 | Msa0658890:three_prime_UTR | 40.0% | |
| TTCTCCAAATTCATGGCCTT+CGG | - | chr4_3:69064028-69064047 | None:intergenic | 40.0% | |
| !! | AGAGTACCGTGGTTTCGTTT+GGG | - | chr4_3:69059590-69059609 | None:intergenic | 45.0% |
| TTCTGATCCCCTTTCTCGAT+CGG | + | chr4_3:69059614-69059633 | Msa0658890:CDS | 45.0% | |
| GAGAAGCAGATGAGATCAGA+CGG | + | chr4_3:69059738-69059757 | Msa0658890:CDS | 45.0% | |
| CCTGGAAAACGCTAAATGAC+CGG | + | chr4_3:69059823-69059842 | Msa0658890:CDS | 45.0% | |
| ! | TGGACAGAGTCTAGGGTTTA+AGG | + | chr4_3:69060054-69060073 | Msa0658890:intron | 45.0% |
| ACGTTGAGATTGAGAGAGCA+AGG | + | chr4_3:69060395-69060414 | Msa0658890:CDS | 45.0% | |
| TGAGATTGAGAGAGCAAGGT+TGG | + | chr4_3:69060399-69060418 | Msa0658890:CDS | 45.0% | |
| TTGCATCAAATCAGCAGCCT+CGG | - | chr4_3:69060467-69060486 | None:intergenic | 45.0% | |
| TGCTTCAACTCCAGTAGAGA+TGG | - | chr4_3:69060927-69060946 | None:intergenic | 45.0% | |
| ! | CGGATTGGAGTACATGTTTG+TGG | + | chr4_3:69061469-69061488 | Msa0658890:intron | 45.0% |
| TGGATTATTAGAGTGGGAGG+TGG | + | chr4_3:69061680-69061699 | Msa0658890:intron | 45.0% | |
| TGGTCACAGTGGAGTATATG+TGG | + | chr4_3:69062320-69062339 | Msa0658890:intron | 45.0% | |
| CGATTTCACAGTCAGTGAAG+TGG | - | chr4_3:69062393-69062412 | None:intergenic | 45.0% | |
| !!! | TAGGCTACTTTTGAAGCAGC+TGG | + | chr4_3:69062965-69062984 | Msa0658890:intron | 45.0% |
| TCACCATGGAAGTCATCCAA+TGG | + | chr4_3:69062988-69063007 | Msa0658890:CDS | 45.0% | |
| TGTCCATTGGATGACTTCCA+TGG | - | chr4_3:69062994-69063013 | None:intergenic | 45.0% | |
| TCATCCAATGGACAGCTCTT+TGG | + | chr4_3:69063000-69063019 | Msa0658890:CDS | 45.0% | |
| CATCCAATGGACAGCTCTTT+GGG | + | chr4_3:69063001-69063020 | Msa0658890:CDS | 45.0% | |
| AACTGGCATTACACACCTCT+AGG | - | chr4_3:69063279-69063298 | None:intergenic | 45.0% | |
| GAGGTGTGTAATGCCAGTTA+TGG | + | chr4_3:69063280-69063299 | Msa0658890:intron | 45.0% | |
| CCTACTACCTTCACTTTCCA+AGG | - | chr4_3:69063380-69063399 | None:intergenic | 45.0% | |
| CCTTGGAAAGTGAAGGTAGT+AGG | + | chr4_3:69063377-69063396 | Msa0658890:intron | 45.0% | |
| TGAAGGTAGTAGGGGAATTG+TGG | + | chr4_3:69063387-69063406 | Msa0658890:intron | 45.0% | |
| ! | AGCCTTGGTAACAACCATAC+CGG | - | chr4_3:69063566-69063585 | None:intergenic | 45.0% |
| TATGGTTGTTACCAAGGCTC+TGG | + | chr4_3:69063567-69063586 | Msa0658890:CDS | 45.0% | |
| AATCTTTGCAACCAGAGCCT+TGG | - | chr4_3:69063581-69063600 | None:intergenic | 45.0% | |
| !! | CGTTGCTATCCTTTGCTGTT+TGG | - | chr4_3:69063630-69063649 | None:intergenic | 45.0% |
| GCAACGATGTTCTTAACTCG+TGG | + | chr4_3:69063644-69063663 | Msa0658890:CDS | 45.0% | |
| GGAGAAGATGCTTGATCTTG+TGG | + | chr4_3:69063678-69063697 | Msa0658890:CDS | 45.0% | |
| GGGCTCCTCAATATGTGATA+TGG | + | chr4_3:69063896-69063915 | Msa0658890:three_prime_UTR | 45.0% | |
| ! | ATGGACTGAAGTTGCGTTAC+GGG | + | chr4_3:69063915-69063934 | Msa0658890:three_prime_UTR | 45.0% |
| AAACCCGAAGGCCATGAATT+TGG | + | chr4_3:69064021-69064040 | Msa0658890:three_prime_UTR | 45.0% | |
| TCTCCAAATTCATGGCCTTC+GGG | - | chr4_3:69064027-69064046 | None:intergenic | 45.0% | |
| AGTTTGAAGAGAAGCCACTG+TGG | + | chr4_3:69064111-69064130 | Msa0658890:three_prime_UTR | 45.0% | |
| ATCAGTCCTGACAAGTCACT+TGG | + | chr4_3:69064232-69064251 | Msa0658890:three_prime_UTR | 45.0% | |
| !!! | TTATTTTATTTGTTTTTTAA+TGG | + | chr4_3:69063487-69063506 | Msa0658890:intron | 5.0% |
| !!! | TATTTTATTTGTTTTTTAAT+GGG | + | chr4_3:69063488-69063507 | Msa0658890:intron | 5.0% |
| !! | GAGAGTACCGTGGTTTCGTT+TGG | - | chr4_3:69059591-69059610 | None:intergenic | 50.0% |
| ! | ACATGCACCGATCGAGAAAG+GGG | - | chr4_3:69059624-69059643 | None:intergenic | 50.0% |
| ! | CACATGCACCGATCGAGAAA+GGG | - | chr4_3:69059625-69059644 | None:intergenic | 50.0% |
| ! | ACACATGCACCGATCGAGAA+AGG | - | chr4_3:69059626-69059645 | None:intergenic | 50.0% |
| AGATCAGACGGCGAAATTGC+CGG | + | chr4_3:69059750-69059769 | Msa0658890:CDS | 50.0% | |
| ! | GATTGCGGCTTTTCTTGTGC+CGG | - | chr4_3:69059772-69059791 | None:intergenic | 50.0% |
| !! | TCTGCTTTGAAGCCAAAGCC+TGG | + | chr4_3:69059805-69059824 | Msa0658890:CDS | 50.0% |
| ! | CCGGTCATTTAGCGTTTTCC+AGG | - | chr4_3:69059826-69059845 | None:intergenic | 50.0% |
| !! | GTCGTTTTGTCCAAACGACG+CGG | + | chr4_3:69059849-69059868 | Msa0658890:CDS | 50.0% |
| CAACTGGTACCTGCTTAAGC+TGG | - | chr4_3:69059875-69059894 | None:intergenic | 50.0% | |
| GTGCAGTTGGACAGAGTCTA+GGG | + | chr4_3:69060047-69060066 | Msa0658890:intron | 50.0% | |
| GAACAGTGTATCTGCTGGGA+AGG | + | chr4_3:69060260-69060279 | Msa0658890:CDS | 50.0% | |
| ! | AATACAGGGGCTTTTAGCCG+AGG | + | chr4_3:69060447-69060466 | Msa0658890:CDS | 50.0% |
| !!! | GGTGGAAACTTTTGGTGCCA+TGG | + | chr4_3:69060613-69060632 | Msa0658890:intron | 50.0% |
| AACAGGCACACCCAATGACA+AGG | - | chr4_3:69062933-69062952 | None:intergenic | 50.0% | |
| ! | TTTGAAGCAGCTGGTCACCA+TGG | + | chr4_3:69062974-69062993 | Msa0658890:CDS | 50.0% |
| TCTCCCAAAGAGCTGTCCAT+TGG | - | chr4_3:69063007-69063026 | None:intergenic | 50.0% | |
| ! | GCTTTTGTGTCTCAGCCTAG+AGG | + | chr4_3:69063261-69063280 | Msa0658890:CDS | 50.0% |
| !! | GAAGCTGAGAAGCATCTGTC+CGG | + | chr4_3:69063544-69063563 | Msa0658890:CDS | 50.0% |
| !! | TGAGAAGCATCTGTCCGGTA+TGG | + | chr4_3:69063549-69063568 | Msa0658890:CDS | 50.0% |
| GTCCGGTATGGTTGTTACCA+AGG | + | chr4_3:69063561-69063580 | Msa0658890:CDS | 50.0% | |
| TAACTCGTGGGCAGCAAACT+TGG | + | chr4_3:69063657-69063676 | Msa0658890:CDS | 50.0% | |
| TGGACTGAAGTTGCGTTACG+GGG | + | chr4_3:69063916-69063935 | Msa0658890:three_prime_UTR | 50.0% | |
| ! | TGTTGCTCACTGTGTTGGTG+AGG | + | chr4_3:69063953-69063972 | Msa0658890:three_prime_UTR | 50.0% |
| ! | GCATCACCAAGTGACTTGTC+AGG | - | chr4_3:69064241-69064260 | None:intergenic | 50.0% |
| GGTGCAGTTGGACAGAGTCT+AGG | + | chr4_3:69060046-69060065 | Msa0658890:intron | 55.0% | |
| TTTGGGCACGGACATGATCC+TGG | - | chr4_3:69060797-69060816 | None:intergenic | 55.0% | |
| CCAATCACAGTGCACAGTGC+AGG | - | chr4_3:69061756-69061775 | None:intergenic | 55.0% | |
| CCTGCACTGTGCACTGTGAT+TGG | + | chr4_3:69061753-69061772 | Msa0658890:intron | 55.0% | |
| ! | CTGGACTGCATCGGTGAATG+TGG | - | chr4_3:69062792-69062811 | None:intergenic | 55.0% |
| CTTAAGCTGGCCGCGTCGTT+TGG | - | chr4_3:69059862-69059881 | None:intergenic | 60.0% | |
| CATGCAGGCTGTGACAGCGA+TGG | + | chr4_3:69060167-69060186 | Msa0658890:intron | 60.0% | |
| TGTGACAGCGATGGTCCAGC+AGG | + | chr4_3:69060176-69060195 | Msa0658890:CDS | 60.0% | |
| GGACATGATCCTGGCGGTCT+AGG | - | chr4_3:69060788-69060807 | None:intergenic | 60.0% | |
| ACGACGCGGCCAGCTTAAGC+AGG | + | chr4_3:69059863-69059882 | Msa0658890:CDS | 65.0% | |
| TCGACTCTGCCTAGACCGCC+AGG | + | chr4_3:69060776-69060795 | Msa0658890:CDS | 65.0% | |
| GGGCACGGACATGATCCTGG+CGG | - | chr4_3:69060794-69060813 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 69059579 | 69064316 | 69059579 | ID=Msa0658890;Name=Msa0658890 |
| chr4_3 | mRNA | 69059579 | 69064316 | 69059579 | ID=Msa0658890-mRNA-1;Parent=Msa0658890;Name=Msa0658890-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|1|0.90|1|0.9|0.90|11|426|477 |
| chr4_3 | exon | 69059579 | 69059884 | 69059579 | ID=Msa0658890-mRNA-1:exon:20163;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69060174 | 69060281 | 69060174 | ID=Msa0658890-mRNA-1:exon:20164;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69060391 | 69060495 | 69060391 | ID=Msa0658890-mRNA-1:exon:20165;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69060614 | 69060670 | 69060614 | ID=Msa0658890-mRNA-1:exon:20166;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69060774 | 69060970 | 69060774 | ID=Msa0658890-mRNA-1:exon:20167;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69062539 | 69062638 | 69062539 | ID=Msa0658890-mRNA-1:exon:20168;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69062753 | 69062865 | 69062753 | ID=Msa0658890-mRNA-1:exon:20169;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69062968 | 69063118 | 69062968 | ID=Msa0658890-mRNA-1:exon:20170;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69063205 | 69063282 | 69063205 | ID=Msa0658890-mRNA-1:exon:20171;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69063544 | 69063766 | 69063544 | ID=Msa0658890-mRNA-1:exon:20172;Parent=Msa0658890-mRNA-1 |
| chr4_3 | exon | 69063895 | 69064316 | 69063895 | ID=Msa0658890-mRNA-1:exon:20173;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69059579 | 69059884 | 69059579 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69060174 | 69060281 | 69060174 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69060391 | 69060495 | 69060391 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69060614 | 69060670 | 69060614 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69060774 | 69060970 | 69060774 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69062539 | 69062638 | 69062539 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69062753 | 69062865 | 69062753 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69062968 | 69063118 | 69062968 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69063205 | 69063282 | 69063205 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | CDS | 69063544 | 69063762 | 69063544 | ID=Msa0658890-mRNA-1:cds;Parent=Msa0658890-mRNA-1 |
| chr4_3 | three_prime_UTR | 69063763 | 69063766 | 69063763 | ID=Msa0658890-mRNA-1:three_prime_utr;Parent=Msa0658890-mRNA-1 |
| chr4_3 | three_prime_UTR | 69063895 | 69064316 | 69063895 | ID=Msa0658890-mRNA-1:three_prime_utr;Parent=Msa0658890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
