AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0569670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569670 MtrunA17_Chr8g0384961 98.723 705 9 0 1 705 1 705 0.0 1449
Msa0569670 MtrunA17_Chr4g0061331 50.141 708 320 9 26 705 25 727 0.0 704
Msa0569670 MtrunA17_Chr8g0360931 29.219 397 211 11 331 659 34 428 2.86e-37 145
Msa0569670 MtrunA17_Chr2g0323521 29.665 418 222 13 310 659 16 429 4.22e-37 145
Msa0569670 MtrunA17_Chr4g0022651 29.567 416 219 14 314 659 17 428 6.28e-37 144
Msa0569670 MtrunA17_Chr4g0072941 31.746 378 182 13 333 641 85 455 7.44e-37 144
Msa0569670 MtrunA17_Chr2g0305591 29.365 378 193 12 332 641 92 463 9.14e-33 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569670 AT5G63770.1 66.760 716 219 6 5 705 1 712 0.0 980
Msa0569670 AT5G63770.2 66.760 716 219 6 5 705 1 712 0.0 980
Msa0569670 AT5G07920.3 50.494 709 313 11 26 705 29 728 0.0 696
Msa0569670 AT5G07920.1 50.494 709 313 11 26 705 29 728 0.0 696
Msa0569670 AT5G07920.2 50.453 662 291 10 26 658 29 682 0.0 649
Msa0569670 AT2G20900.3 29.574 399 212 12 328 659 35 431 2.55e-36 143
Msa0569670 AT2G20900.2 29.574 399 212 12 328 659 35 431 2.55e-36 143
Msa0569670 AT2G20900.4 29.574 399 212 12 328 659 35 431 2.86e-36 144
Msa0569670 AT2G20900.1 29.574 399 212 12 328 659 35 431 2.86e-36 144
Msa0569670 AT4G28130.1 27.692 390 215 11 333 659 47 432 6.03e-36 142
Msa0569670 AT5G57690.1 29.058 382 187 12 333 641 90 460 1.67e-35 141
Msa0569670 AT2G18730.1 30.343 379 186 13 333 641 91 461 1.05e-33 135
Msa0569670 AT4G30340.1 29.319 382 187 13 333 641 94 465 3.08e-33 134
Msa0569670 AT4G30340.2 33.755 237 105 8 333 521 94 326 9.34e-27 113

Find 204 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGAACGAGAGAGGAATTT+TGG 0.117261 4_1:-71605545 None:intergenic
AATGATCAGGTTGTACATTT+TGG 0.153082 4_1:+71606647 Msa0569670:intron
CTATGGCCTTCTCAAAATTT+AGG 0.158150 4_1:+71606981 Msa0569670:CDS
CTCTCTCGTTCTCGCTCTTC+AGG 0.227603 4_1:+71605554 Msa0569670:five_prime_UTR
GGCTTAATTGTGCTTAATAT+TGG 0.236352 4_1:+71610476 Msa0569670:CDS
CCAACGTGTATTTCTTGATT+TGG 0.257432 4_1:-71607637 None:intergenic
AACAATTTGACTAGAGATTC+TGG 0.272349 4_1:+71607290 Msa0569670:CDS
CCCAAGCTGCCCACCACTTC+TGG 0.283169 4_1:-71607705 None:intergenic
CCTTTCCCAGTTCAAATAGA+TGG 0.283248 4_1:+71611494 Msa0569670:CDS
CTAAAATAGTTGCCCAACTT+TGG 0.307010 4_1:+71611938 Msa0569670:three_prime_UTR
CAAAGAGGAGAGAGGATAAT+TGG 0.308348 4_1:-71607341 None:intergenic
CTGACTTGCCATGGCAAGTA+TGG 0.313060 4_1:+71610309 Msa0569670:CDS
CAAACCAATACTCTAAAATA+TGG 0.318489 4_1:-71609291 None:intergenic
ATTTGTCCAGGGTTATGAAT+TGG 0.320327 4_1:+71609415 Msa0569670:CDS
AAAAGATGCTAGGCCACTTT+TGG 0.323510 4_1:+71607670 Msa0569670:CDS
TAGCCTGGTTGTAGGATAAA+TGG 0.328389 4_1:-71611521 None:intergenic
AGAAGGAGCAAGAGACATTA+TGG 0.333839 4_1:+71610274 Msa0569670:CDS
ATAGCAGCTGCTTGTCCTTT+AGG 0.335006 4_1:-71611796 None:intergenic
GCTTAATTGTGCTTAATATT+GGG 0.337779 4_1:+71610477 Msa0569670:CDS
TGGCTGATCACTGGATCATT+TGG 0.342110 4_1:+71606771 Msa0569670:CDS
GGTTCCCCATCTATTTGAAC+TGG 0.347647 4_1:-71611500 None:intergenic
GTGGGGATGGCACTGTTGCA+TGG 0.347792 4_1:+71609316 Msa0569670:CDS
AAAAGTGGCCTAGCATCTTT+TGG 0.355294 4_1:-71607668 None:intergenic
TAAAATAGTTGCCCAACTTT+GGG 0.363670 4_1:+71611939 Msa0569670:three_prime_UTR
TTTGTCCAGGGTTATGAATT+GGG 0.365198 4_1:+71609416 Msa0569670:CDS
CCAGAAGTGGTGGGCAGCTT+GGG 0.370938 4_1:+71607705 Msa0569670:CDS
TACTGATATGTATATGTTCA+TGG 0.373326 4_1:+71612197 Msa0569670:three_prime_UTR
TGTAAATGTGTGGCTCAGGC+TGG 0.373393 4_1:+71607095 Msa0569670:CDS
CTCCATCGTTGCTCGGTTTG+TGG 0.376745 4_1:+71607029 Msa0569670:CDS
ACATGGGTGGAGTAGATCTT+TGG 0.383148 4_1:+71610504 Msa0569670:CDS
CTCTAATCTCATTTGGGTGT+TGG 0.384881 4_1:-71612163 None:intergenic
TGGGGATGGCACTGTTGCAT+GGG 0.391770 4_1:+71609317 Msa0569670:CDS
CTTCTCTGCACTGGATGGAC+AGG 0.393997 4_1:+71609446 Msa0569670:CDS
AGCGACGAGCGTCTTTGAAT+TGG 0.396069 4_1:+71606829 Msa0569670:CDS
TTCCTCTGTCGGATCATTTG+TGG 0.397710 4_1:+71606901 Msa0569670:CDS
CGATTTGAATGAGATCAAAA+TGG 0.403141 4_1:-71605661 None:intergenic
ATCTTACATTAGCTGCTTTG+TGG 0.403557 4_1:-71612042 None:intergenic
AGTTACTATGTTAGATCGTT+GGG 0.404411 4_1:+71609509 Msa0569670:CDS
TCATTCAAATCGATCGTGTT+AGG 0.407253 4_1:+71605672 Msa0569670:five_prime_UTR
ACCAGAAGTGGTGGGCAGCT+TGG 0.411845 4_1:+71607704 Msa0569670:CDS
CCAGGGAAAAGAAGAAAGTT+TGG 0.416730 4_1:+71606865 Msa0569670:CDS
TCCTCTGTCGGATCATTTGT+GGG 0.421592 4_1:+71606902 Msa0569670:CDS
CCTTCCTTCCCCTTCTTCCA+AGG 0.422529 4_1:-71605484 None:intergenic
GACACCATTGGTCAGAAAGA+TGG 0.424732 4_1:+71607132 Msa0569670:CDS
AATCAAGTAATCACCTGAAC+AGG 0.428109 4_1:-71607764 None:intergenic
AGAAGTTGATGAAAATCAAA+AGG 0.428769 4_1:+71607370 Msa0569670:CDS
TATGCTACTAAATCCTGTTC+AGG 0.429704 4_1:+71607751 Msa0569670:CDS
AATAAAATAATATGTTTCCT+TGG 0.430920 4_1:+71605467 Msa0569670:five_prime_UTR
TCAAGGTCCTGAGGTAGGTC+TGG 0.435183 4_1:+71609251 Msa0569670:CDS
GGGAGGAGGCTTCTCTGCAC+TGG 0.438297 4_1:+71609437 Msa0569670:CDS
ACTCTATGTAGCCTGGTTGT+AGG 0.440612 4_1:-71611529 None:intergenic
TGGAAGAAGGGGAAGGAAGG+GGG 0.443612 4_1:+71605487 Msa0569670:five_prime_UTR
ATGGCACCTGGGGAAACTTC+AGG 0.443641 4_1:+71610613 Msa0569670:CDS
ATGTATATGTTCATGGGTCT+TGG 0.444422 4_1:+71612204 Msa0569670:three_prime_UTR
ATAGATGCAATGGAAGCATC+AGG 0.447107 4_1:-71606741 None:intergenic
CTTGAGGTAGTATGTGTTTG+TGG 0.447255 4_1:+71610587 Msa0569670:CDS
TACTCCCCTCCATCGTTGCT+CGG 0.452691 4_1:+71607022 Msa0569670:CDS
TTGGAAGAAGGGGAAGGAAG+GGG 0.454182 4_1:+71605486 Msa0569670:five_prime_UTR
TTAGAGTATTGGTTTGTGGT+GGG 0.454440 4_1:+71609298 Msa0569670:CDS
GGAGGTGGTTGTCATACTAA+TGG 0.454823 4_1:+71607467 Msa0569670:CDS
TAATATGTTTCCTTGGAAGA+AGG 0.460923 4_1:+71605474 Msa0569670:five_prime_UTR
CAACACCCAAATGAGATTAG+AGG 0.461132 4_1:+71612164 Msa0569670:three_prime_UTR
GTGTATTTCTTGATTTGGCT+AGG 0.463049 4_1:-71607632 None:intergenic
AACACATATTCTAATAATGT+TGG 0.469885 4_1:-71607518 None:intergenic
GCAATTATTCCCCTAGGCAC+TGG 0.473554 4_1:+71609387 Msa0569670:CDS
CTTTCCCAGTTCAAATAGAT+GGG 0.476790 4_1:+71611495 Msa0569670:CDS
TCCTGAAAAGTTTAGTAGCC+AGG 0.480291 4_1:+71609732 Msa0569670:CDS
ATTGGATTAAAGCTGCGGCC+AGG 0.481183 4_1:+71606847 Msa0569670:CDS
TGTATTTCTTGATTTGGCTA+GGG 0.481749 4_1:-71607631 None:intergenic
TAGAGTATTGGTTTGTGGTG+GGG 0.488695 4_1:+71609299 Msa0569670:CDS
GGAAGAAGGGGAAGGAAGGG+GGG 0.490699 4_1:+71605488 Msa0569670:five_prime_UTR
CAAATCATTTCCAGTGCCTA+GGG 0.490800 4_1:-71609397 None:intergenic
CTCCTACATGGCATTGTCGT+TGG 0.492326 4_1:+71607237 Msa0569670:CDS
TCAACTTCTTTGACACAAAG+AGG 0.493022 4_1:-71607356 None:intergenic
AATATGTTTCCTTGGAAGAA+GGG 0.493561 4_1:+71605475 Msa0569670:five_prime_UTR
CCTAGGGGAATAATTGCAAC+AGG 0.494366 4_1:-71609381 None:intergenic
GCACTGGAAATGATTTGTCC+AGG 0.495702 4_1:+71609403 Msa0569670:CDS
TGTTTGTGGAGCATGGCACC+TGG 0.496233 4_1:+71610601 Msa0569670:CDS
TTACAGTCCTTTGCTGCATA+CGG 0.496296 4_1:-71607077 None:intergenic
GTATTGGTTTGTGGTGGGGA+TGG 0.496566 4_1:+71609303 Msa0569670:CDS
ACACCATTGGTCAGAAAGAT+GGG 0.497299 4_1:+71607133 Msa0569670:CDS
ATGGTCCTATAAAAGGGGTC+TGG 0.497596 4_1:-71611972 None:intergenic
GGAATAATTGCAACAGGTGG+AGG 0.497750 4_1:-71609375 None:intergenic
CAGTTACTATGTTAGATCGT+TGG 0.497824 4_1:+71609508 Msa0569670:CDS
CCTTGGAAGAAGGGGAAGGA+AGG 0.498394 4_1:+71605484 Msa0569670:five_prime_UTR
CGGATCTTAAGAAAGATTGA+TGG 0.504050 4_1:-71611899 None:intergenic
TTTGTGATTTGGGTTCTTTG+AGG 0.504434 4_1:+71607318 Msa0569670:CDS
CTCAAGCATCTTGTCATGCA+TGG 0.504681 4_1:-71610570 None:intergenic
GTTTCTGTTTGACTTCCCTA+TGG 0.506997 4_1:+71606964 Msa0569670:CDS
GCTTAATATTGGGAGCTACA+TGG 0.509872 4_1:+71610487 Msa0569670:CDS
TTGGATTAAAGCTGCGGCCA+GGG 0.511143 4_1:+71606848 Msa0569670:CDS
TTTAGAGTATTGGTTTGTGG+TGG 0.513610 4_1:+71609297 Msa0569670:CDS
CACCACAAACCGAGCAACGA+TGG 0.514753 4_1:-71607031 None:intergenic
CCATCTATTTGAACTGGGAA+AGG 0.516877 4_1:-71611494 None:intergenic
AGGGTTATGAATTGGGGAGG+AGG 0.517441 4_1:+71609423 Msa0569670:CDS
CTGCACTGGATGGACAGGGC+GGG 0.519579 4_1:+71609451 Msa0569670:CDS
GTAAATGTGTGGCTCAGGCT+GGG 0.521953 4_1:+71607096 Msa0569670:CDS
GGAGGCTTCTCTGCACTGGA+TGG 0.522202 4_1:+71609441 Msa0569670:CDS
TATGACATTTCACATGAATG+AGG 0.525047 4_1:-71607268 None:intergenic
CTTGGAAGAAGGGGAAGGAA+GGG 0.525869 4_1:+71605485 Msa0569670:five_prime_UTR
TTAGTCATATTAGACACCAT+TGG 0.526392 4_1:+71607120 Msa0569670:CDS
TTGTAAAATCCTCTCCTACA+TGG 0.527594 4_1:+71607225 Msa0569670:CDS
GGACTGTAAATGTGTGGCTC+AGG 0.529683 4_1:+71607091 Msa0569670:CDS
ACGTTAACAAACAGCTTCCA+AGG 0.531343 4_1:+71612266 Msa0569670:three_prime_UTR
TTGTTCTCCGTATGCAGCAA+AGG 0.536894 4_1:+71607070 Msa0569670:CDS
TTGATTTGCCAAAAGATGCT+AGG 0.537796 4_1:+71607660 Msa0569670:CDS
AAATTACGATATGCAAAAGA+AGG 0.539584 4_1:+71610257 Msa0569670:CDS
CCTATACCTGAAGTTTCCCC+AGG 0.540525 4_1:-71610619 None:intergenic
TTCATCAATACCAGAAGTGG+TGG 0.542080 4_1:+71607695 Msa0569670:CDS
AAAATTTAAAGTTCCTCTGT+CGG 0.542199 4_1:+71606890 Msa0569670:CDS
TTGTCCAGGGTTATGAATTG+GGG 0.543064 4_1:+71609417 Msa0569670:CDS
TAACCCATCTTTCTGACCAA+TGG 0.545670 4_1:-71607136 None:intergenic
GAAGTTGATGAAAATCAAAA+GGG 0.545718 4_1:+71607371 Msa0569670:CDS
CACTGGAAATGATTTGTCCA+GGG 0.546870 4_1:+71609404 Msa0569670:CDS
CTTAATATTGGGAGCTACAT+GGG 0.548113 4_1:+71610488 Msa0569670:CDS
GTTGATGAAAATCAAAAGGG+TGG 0.550454 4_1:+71607374 Msa0569670:CDS
TTTGTATTGAGTGCTTCTCA+AGG 0.550465 4_1:+71609234 Msa0569670:CDS
GGTTGCAATATACACAGCCT+AGG 0.551123 4_1:-71612090 None:intergenic
GTATTTCTTGATTTGGCTAG+GGG 0.552227 4_1:-71607630 None:intergenic
TTCAATCTTCTGTGAAGAGA+AGG 0.552681 4_1:-71607728 None:intergenic
ACAAACCGAGCAACGATGGA+GGG 0.557150 4_1:-71607027 None:intergenic
GACAGAAGTATTATTAGAAG+CGG 0.557422 4_1:+71611822 Msa0569670:CDS
TTCTCTGCACTGGATGGACA+GGG 0.560238 4_1:+71609447 Msa0569670:CDS
TGAGTTAACTCTATGTAGCC+TGG 0.560280 4_1:-71611536 None:intergenic
CCTGTTGCAATTATTCCCCT+AGG 0.560632 4_1:+71609381 Msa0569670:CDS
ATTATTAGAAGCGGAATGCA+AGG 0.561033 4_1:+71611831 Msa0569670:CDS
TCCTCCCCAATTCATAACCC+TGG 0.562331 4_1:-71609421 None:intergenic
AATGGTAGAGCATCAGGGAA+TGG 0.563261 4_1:+71607596 Msa0569670:CDS
AACAATTCCAGACCTACCTC+AGG 0.563599 4_1:-71609258 None:intergenic
ACTGATATGTATATGTTCAT+GGG 0.564421 4_1:+71612198 Msa0569670:three_prime_UTR
ATATGTTTCCTTGGAAGAAG+GGG 0.566391 4_1:+71605476 Msa0569670:five_prime_UTR
GTCTTCATCAATACCAGAAG+TGG 0.567567 4_1:+71607692 Msa0569670:CDS
AGAGTTAACTCATCGTGGAC+AGG 0.568974 4_1:+71611547 Msa0569670:CDS
AACACCCAAATGAGATTAGA+GGG 0.570406 4_1:+71612165 Msa0569670:three_prime_UTR
GCTTCTCAAGGTCCTGAGGT+AGG 0.571347 4_1:+71609246 Msa0569670:CDS
TAGTATGTGTTTGTGGAGCA+TGG 0.572843 4_1:+71610594 Msa0569670:CDS
CACAAACCGAGCAACGATGG+AGG 0.572989 4_1:-71607028 None:intergenic
TTGGACTTTCACAAGCAAGA+AGG 0.573900 4_1:+71611432 Msa0569670:CDS
ACTTCAGAAGATGAGCCTAA+AGG 0.574123 4_1:+71611781 Msa0569670:CDS
TCAGAGAAAAGTTCTTCTCA+AGG 0.575293 4_1:+71611870 Msa0569670:CDS
TCCAGGGTTATGAATTGGGG+AGG 0.578634 4_1:+71609420 Msa0569670:CDS
ACAAATCATTTCCAGTGCCT+AGG 0.580261 4_1:-71609398 None:intergenic
AGTACCTAGGTAGTTCATCA+TGG 0.582057 4_1:-71609589 None:intergenic
GTTCCCCATCTATTTGAACT+GGG 0.587718 4_1:-71611499 None:intergenic
ATACTCAGGTATTCATGTTG+AGG 0.588169 4_1:+71611755 Msa0569670:intron
GAACTTGTGCTGACTTGCCA+TGG 0.588243 4_1:+71610300 Msa0569670:CDS
AGCGGAACAAGTACAACGAT+GGG 0.589787 4_1:+71607552 Msa0569670:CDS
TTAGAAGGCTGAACGAGAAG+CGG 0.593274 4_1:-71611919 None:intergenic
CTCAGGTATTCATGTTGAGG+AGG 0.594023 4_1:+71611758 Msa0569670:intron
TCATATACGCTGTTCTCAAG+TGG 0.595470 4_1:+71606805 Msa0569670:CDS
CTGAAGAGCGAGAACGAGAG+AGG 0.596739 4_1:-71605553 None:intergenic
GTCAGAAAGATGGGTTAATG+TGG 0.597798 4_1:+71607142 Msa0569670:CDS
ACTGTTGCGTCTAACACCCT+AGG 0.600078 4_1:+71612073 Msa0569670:three_prime_UTR
ACTTCAAGCCATACTTGCCA+TGG 0.604236 4_1:-71610317 None:intergenic
AATCTGACTACGAACGGAAG+AGG 0.604553 4_1:-71607417 None:intergenic
TCTGCACTGGATGGACAGGG+CGG 0.605556 4_1:+71609450 Msa0569670:CDS
GTTTCCTTGGAAGAAGGGGA+AGG 0.608328 4_1:+71605480 Msa0569670:five_prime_UTR
CACCAACGACAATGCCATGT+AGG 0.612205 4_1:-71607239 None:intergenic
TTGTATACGTAGTGTGTGTG+TGG 0.612544 4_1:+71612231 Msa0569670:three_prime_UTR
ATGTGTTGAACAGTCTTAAG+CGG 0.613628 4_1:+71607534 Msa0569670:CDS
CAAGTATGGCTTGAAGTGGA+CGG 0.614916 4_1:+71610323 Msa0569670:CDS
CAAACCGAGCAACGATGGAG+GGG 0.615893 4_1:-71607026 None:intergenic
CTTGCAGAAGAAGACTCTGA+AGG 0.617154 4_1:+71609540 Msa0569670:CDS
CTTTCTAATCTGACTACGAA+CGG 0.619916 4_1:-71607423 None:intergenic
CAAGCAAGAAGGCTAGCTCA+AGG 0.620516 4_1:+71611443 Msa0569670:CDS
TAATAATGTTGGATCAGCAA+CGG 0.620656 4_1:-71607507 None:intergenic
TTTGAATTGGATTAAAGCTG+CGG 0.622591 4_1:+71606842 Msa0569670:CDS
GCTAATGTCATGCAAAAGCA+TGG 0.623168 4_1:-71609478 None:intergenic
AAACAGAAACAACAAGTGGA+TGG 0.623509 4_1:-71606951 None:intergenic
TATTTGAACTGGGAAAGGAC+TGG 0.625634 4_1:-71611489 None:intergenic
CTTTGACACAAAGAGGAGAG+AGG 0.630517 4_1:-71607349 None:intergenic
GTATTGATGAAGACCAAAAG+TGG 0.630832 4_1:-71607683 None:intergenic
GAGTGCTTCTCAAGGTCCTG+AGG 0.635853 4_1:+71609242 Msa0569670:CDS
ATGGCAAGTATGGCTTGAAG+TGG 0.638346 4_1:+71610319 Msa0569670:CDS
TTTGTGGAGCATGGCACCTG+GGG 0.638912 4_1:+71610603 Msa0569670:CDS
CAACGATGGAGGGGAGTACG+TGG 0.640506 4_1:-71607017 None:intergenic
AAGCGGAACAAGTACAACGA+TGG 0.640980 4_1:+71607551 Msa0569670:CDS
AGGGGAATAATTGCAACAGG+TGG 0.642218 4_1:-71609378 None:intergenic
AAATCCATGATGAACTACCT+AGG 0.642755 4_1:+71609585 Msa0569670:CDS
TAGATGCAATGGAAGCATCA+GGG 0.643701 4_1:-71606740 None:intergenic
TTATTAGAAGCGGAATGCAA+GGG 0.645490 4_1:+71611832 Msa0569670:CDS
AGGAATTGGATGTGATGCAA+AGG 0.645990 4_1:+71609675 Msa0569670:intron
CATGCATGACAAGATGCTTG+AGG 0.647805 4_1:+71610571 Msa0569670:CDS
GTTTGTGGAGCATGGCACCT+GGG 0.648926 4_1:+71610602 Msa0569670:CDS
CTTGAGAACAGCGTATATGA+CGG 0.649367 4_1:-71606802 None:intergenic
ACGACAATGCCATGTAGGAG+AGG 0.650346 4_1:-71607234 None:intergenic
TTAGCTGCTTTGTGGAAGTG+TGG 0.650819 4_1:-71612034 None:intergenic
GTTGCAATATACACAGCCTA+GGG 0.651900 4_1:-71612089 None:intergenic
AAGAGACATTGAGATTCCCA+AGG 0.653403 4_1:+71610346 Msa0569670:CDS
TTTCCCAGTTCAAATAGATG+GGG 0.658576 4_1:+71611496 Msa0569670:CDS
AGTCAAACAGAAACAACAAG+TGG 0.662259 4_1:-71606955 None:intergenic
ATGGAGGGGAGTACGTGGTG+AGG 0.665215 4_1:-71607012 None:intergenic
TTCGTAGTCAGATTAGAAAG+CGG 0.668976 4_1:+71607426 Msa0569670:CDS
CATACTAATGGTAAGTCACG+AGG 0.672018 4_1:+71607479 Msa0569670:CDS
CCAAATCAAGAAATACACGT+TGG 0.672676 4_1:+71607637 Msa0569670:CDS
GAACCATTTATCCTACAACC+AGG 0.677637 4_1:+71611518 Msa0569670:CDS
TCATCAATACCAGAAGTGGT+GGG 0.679359 4_1:+71607696 Msa0569670:CDS
TTGCTGCATACGGAGAACAA+AGG 0.694647 4_1:-71607067 None:intergenic
ACCCACAAATGATCCGACAG+AGG 0.696039 4_1:-71606903 None:intergenic
AGGCTGTGTATATTGCAACC+CGG 0.700697 4_1:+71612093 Msa0569670:three_prime_UTR
TACATAGAGTTAACTCATCG+TGG 0.708322 4_1:+71611542 Msa0569670:CDS
AAATCATTTCCAGTGCCTAG+GGG 0.708420 4_1:-71609396 None:intergenic
AATATTGGGAGCTACATGGG+TGG 0.721837 4_1:+71610491 Msa0569670:CDS
AGCAAAGGACTGTAAATGTG+TGG 0.723555 4_1:+71607085 Msa0569670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAAAAGAAATTGTA+GGG - chr4_1:71605835-71605854 None:intergenic 10.0%
!! AAATATAAAAAAGAAATTGT+AGG - chr4_1:71605836-71605855 None:intergenic 10.0%
!! TACATAAATAAAAATGATAA+TGG - chr4_1:71605859-71605878 None:intergenic 10.0%
!! TTTATTTATGTATGTATTAA+TGG + chr4_1:71605867-71605886 Msa0569670:intron 10.0%
!!! TTTTTTATAAAAAGTTTGTT+TGG + chr4_1:71606006-71606025 Msa0569670:intron 10.0%
!! TGAAATTAAATATAAAGTAT+GGG - chr4_1:71606548-71606567 None:intergenic 10.0%
!!! AAAAAATATTTTATACTTGA+AGG - chr4_1:71608425-71608444 None:intergenic 10.0%
!! AACATTTATAAAAAAGTAAA+AGG + chr4_1:71608497-71608516 Msa0569670:intron 10.0%
!! TTTACATATAAATTTATAGA+AGG - chr4_1:71610415-71610434 None:intergenic 10.0%
!!! TTAAATTTTTTTTTTCATGA+AGG + chr4_1:71610445-71610464 Msa0569670:intron 10.0%
!!! CTTTTTTTTTTTTTTTTGAA+TGG + chr4_1:71610899-71610918 Msa0569670:intron 10.0%
!!! GGAAACATATTATTTTATTT+TGG - chr4_1:71605466-71605485 None:intergenic 15.0%
!! AATAAAATAATATGTTTCCT+TGG + chr4_1:71605467-71605486 Msa0569670:five_prime_UTR 15.0%
!! CTGAAATTAAATATAAAGTA+TGG - chr4_1:71606549-71606568 None:intergenic 15.0%
!!! GATTTGTTATAATATATTCA+AGG - chr4_1:71607984-71608003 None:intergenic 15.0%
!!! TGAAGTGTATTTTAAATAAT+TGG - chr4_1:71608315-71608334 None:intergenic 15.0%
!!! TATTTACATTACCATTTTTA+CGG + chr4_1:71609845-71609864 Msa0569670:intron 15.0%
!!! ATCTTTGTTGATTTATTTAT+AGG - chr4_1:71610987-71611006 None:intergenic 15.0%
!! TATCACATGATTTATGATTA+CGG + chr4_1:71605909-71605928 Msa0569670:intron 20.0%
!!! ATAATTGATTTTGACATGTT+TGG - chr4_1:71606210-71606229 None:intergenic 20.0%
!! AACACATATTCTAATAATGT+TGG - chr4_1:71607521-71607540 None:intergenic 20.0%
!! AGTAGAAAAAGAAAGAAAAA+AGG - chr4_1:71608080-71608099 None:intergenic 20.0%
!! AGATGTAATAATGTGAAATT+TGG + chr4_1:71608284-71608303 Msa0569670:intron 20.0%
!!! TGTTAATTTTCTCATCAATA+GGG + chr4_1:71608875-71608894 Msa0569670:intron 20.0%
!! CTCTTAAAGAATTATTTAGT+GGG - chr4_1:71609085-71609104 None:intergenic 20.0%
!!! AATAATTCTTTAAGAGCAAA+TGG + chr4_1:71609089-71609108 Msa0569670:intron 20.0%
!!! GAATAGATATTTTACAATGA+TGG - chr4_1:71609782-71609801 None:intergenic 20.0%
!! GTAAAAATAATTATCAGCAT+CGG - chr4_1:71610379-71610398 None:intergenic 20.0%
!! ACATATAAATTTATAGAAGG+CGG - chr4_1:71610412-71610431 None:intergenic 20.0%
!! GGTATTTAATATTTAATGAG+AGG + chr4_1:71610769-71610788 Msa0569670:intron 20.0%
!! TAAACTGTAACATCAAAAAA+AGG + chr4_1:71610854-71610873 Msa0569670:intron 20.0%
!! AAACTGTAACATCAAAAAAA+GGG + chr4_1:71610855-71610874 Msa0569670:intron 20.0%
!! TTTGAGCTTTCAAATTTAAT+CGG + chr4_1:71611095-71611114 Msa0569670:intron 20.0%
!! AAACAGATAAAAGACATTTA+CGG + chr4_1:71611371-71611390 Msa0569670:intron 20.0%
!! TTTCCAAAAAATATAGAGAA+AGG + chr4_1:71612004-71612023 Msa0569670:three_prime_UTR 20.0%
!!! ATACCTTTCTCTATATTTTT+TGG - chr4_1:71612010-71612029 None:intergenic 20.0%
!! AAAAGAAAAAAAAAATACGC+CGG - chr4_1:71612115-71612134 None:intergenic 20.0%
!! TCAAAATGGAGAAGAATTTT+TGG - chr4_1:71605650-71605669 None:intergenic 25.0%
!! TGAGTTGAAAATTAAGTGTT+TGG + chr4_1:71606055-71606074 Msa0569670:intron 25.0%
!!! AATTGATTTTACCTCCAAAA+TGG - chr4_1:71606173-71606192 None:intergenic 25.0%
! AGAAAATCAATTCTGATTGA+GGG + chr4_1:71606375-71606394 Msa0569670:intron 25.0%
! CCATAAATTATGTGTATGTT+TGG - chr4_1:71606425-71606444 None:intergenic 25.0%
! CCAAACATACACATAATTTA+TGG + chr4_1:71606422-71606441 Msa0569670:intron 25.0%
!! ATTTGGGAATTGTAATTTTG+AGG + chr4_1:71606706-71606725 Msa0569670:CDS 25.0%
!! AAAATTTAAAGTTCCTCTGT+CGG + chr4_1:71606890-71606909 Msa0569670:CDS 25.0%
!!! AGAAGTTGATGAAAATCAAA+AGG + chr4_1:71607370-71607389 Msa0569670:CDS 25.0%
!!! GAAGTTGATGAAAATCAAAA+GGG + chr4_1:71607371-71607390 Msa0569670:CDS 25.0%
!! AAATTTTGTGATCTTAGATC+AGG + chr4_1:71607919-71607938 Msa0569670:intron 25.0%
!! TCTTAAGATATAGTCTGTTT+TGG + chr4_1:71608008-71608027 Msa0569670:intron 25.0%
! TATTTCCAAAACTTTGGTAA+TGG - chr4_1:71608263-71608282 None:intergenic 25.0%
! CATCTATATTTCCAAAACTT+TGG - chr4_1:71608269-71608288 None:intergenic 25.0%
! TGTAATAATGTGAAATTTGG+TGG + chr4_1:71608287-71608306 Msa0569670:intron 25.0%
! TTTATGCAATCAGGAATTAT+AGG - chr4_1:71608625-71608644 None:intergenic 25.0%
! ATCTTCTTAAAAACTGTTGA+CGG + chr4_1:71608727-71608746 Msa0569670:intron 25.0%
!!! TCAAGACTGTGTTTTATTAT+TGG + chr4_1:71608848-71608867 Msa0569670:intron 25.0%
!! CTGTTAATTTTCTCATCAAT+AGG + chr4_1:71608874-71608893 Msa0569670:intron 25.0%
!! ATAGGGTTTCTTTAGAAAAA+AGG + chr4_1:71608892-71608911 Msa0569670:intron 25.0%
! CATATCATACAGTATCATAA+GGG - chr4_1:71608935-71608954 None:intergenic 25.0%
! TCATATCATACAGTATCATA+AGG - chr4_1:71608936-71608955 None:intergenic 25.0%
! GCTCTTAAAGAATTATTTAG+TGG - chr4_1:71609086-71609105 None:intergenic 25.0%
!!! TGTACCATATTTTAGAGTAT+TGG + chr4_1:71609287-71609306 Msa0569670:CDS 25.0%
!!! CAAACCAATACTCTAAAATA+TGG - chr4_1:71609294-71609313 None:intergenic 25.0%
!!! TATTTTAGAGTATTGGTTTG+TGG + chr4_1:71609294-71609313 Msa0569670:CDS 25.0%
!!! GATTTAGTTTTCACTTTATG+TGG - chr4_1:71609570-71609589 None:intergenic 25.0%
!! AATTCTCATAAGTCTTATCT+AGG + chr4_1:71610150-71610169 Msa0569670:intron 25.0%
! TTGGGTATATTTATATCTGA+TGG + chr4_1:71610210-71610229 Msa0569670:intron 25.0%
! AAATTACGATATGCAAAAGA+AGG + chr4_1:71610257-71610276 Msa0569670:CDS 25.0%
! GCTTAATTGTGCTTAATATT+GGG + chr4_1:71610477-71610496 Msa0569670:CDS 25.0%
! AACTGTAACATCAAAAAAAG+GGG + chr4_1:71610856-71610875 Msa0569670:intron 25.0%
! TTGATTTATTTATAGGTCCT+AGG - chr4_1:71610980-71610999 None:intergenic 25.0%
! GTATTGAACTTTCATACTTA+CGG - chr4_1:71611149-71611168 None:intergenic 25.0%
! AAAAAATTGACAAAGACACT+TGG - chr4_1:71611183-71611202 None:intergenic 25.0%
! ATAATTATTTCAACAGACAG+AGG - chr4_1:71611213-71611232 None:intergenic 25.0%
!!! TTATTTTTGGTGATGAAAGA+GGG - chr4_1:71611286-71611305 None:intergenic 25.0%
!!! TTTATTTTTGGTGATGAAAG+AGG - chr4_1:71611287-71611306 None:intergenic 25.0%
! CTTTCATCACCAAAAATAAA+AGG + chr4_1:71611287-71611306 Msa0569670:intron 25.0%
!!! CATTAACCTCCTTTTATTTT+TGG - chr4_1:71611299-71611318 None:intergenic 25.0%
!! TTTTCAAACGTAAATCTAAC+AGG + chr4_1:71611668-71611687 Msa0569670:intron 25.0%
!!! TTTTTGGAAATGACCAAAAA+TGG - chr4_1:71611994-71612013 None:intergenic 25.0%
! AAAGAAAAAAAAAATACGCC+GGG - chr4_1:71612114-71612133 None:intergenic 25.0%
! TACTGATATGTATATGTTCA+TGG + chr4_1:71612197-71612216 Msa0569670:three_prime_UTR 25.0%
! ACTGATATGTATATGTTCAT+GGG + chr4_1:71612198-71612217 Msa0569670:three_prime_UTR 25.0%
TAATATGTTTCCTTGGAAGA+AGG + chr4_1:71605474-71605493 Msa0569670:five_prime_UTR 30.0%
AATATGTTTCCTTGGAAGAA+GGG + chr4_1:71605475-71605494 Msa0569670:five_prime_UTR 30.0%
CGATTTGAATGAGATCAAAA+TGG - chr4_1:71605664-71605683 None:intergenic 30.0%
AAAGATGAGAGACATTGTAT+TGG - chr4_1:71605710-71605729 None:intergenic 30.0%
GTTGCAGCTATATTCAAAAA+TGG - chr4_1:71605768-71605787 None:intergenic 30.0%
AAAAAAGAAATTGTAGGGCA+CGG - chr4_1:71605830-71605849 None:intergenic 30.0%
! TTGGTTATGTGAATTGATTC+TGG + chr4_1:71606025-71606044 Msa0569670:intron 30.0%
! ATGTTTGGTTACACTTTTAG+AGG - chr4_1:71606257-71606276 None:intergenic 30.0%
ACGTGAATGTAGTATATGTT+TGG - chr4_1:71606272-71606291 None:intergenic 30.0%
! ACTGATTCTAACTTTAAGCT+AGG - chr4_1:71606348-71606367 None:intergenic 30.0%
GAGAAAATCAATTCTGATTG+AGG + chr4_1:71606374-71606393 Msa0569670:intron 30.0%
!! GGTTTGAATTTTGACAAGTT+TGG - chr4_1:71606404-71606423 None:intergenic 30.0%
GGGTAGGAAAAAAAATTGAA+GGG - chr4_1:71606499-71606518 None:intergenic 30.0%
AGGGTAGGAAAAAAAATTGA+AGG - chr4_1:71606500-71606519 None:intergenic 30.0%
GTTATCTGTAACAATGATTG+AGG + chr4_1:71606614-71606633 Msa0569670:intron 30.0%
AGGTTTCTTATTGAATGATC+AGG + chr4_1:71606634-71606653 Msa0569670:intron 30.0%
!! AATGATCAGGTTGTACATTT+TGG + chr4_1:71606647-71606666 Msa0569670:intron 30.0%
!! AGTTTTGTCATGTTCGATTT+GGG + chr4_1:71606690-71606709 Msa0569670:CDS 30.0%
TTTGAATTGGATTAAAGCTG+CGG + chr4_1:71606842-71606861 Msa0569670:CDS 30.0%
!! TGGGTTGAAGATTTTACTTA+TGG + chr4_1:71606921-71606940 Msa0569670:CDS 30.0%
! GGGTTGAAGATTTTACTTAT+GGG + chr4_1:71606922-71606941 Msa0569670:CDS 30.0%
! GGTTGAAGATTTTACTTATG+GGG + chr4_1:71606923-71606942 Msa0569670:CDS 30.0%
!! TAAATTTTGAGAAGGCCATA+GGG - chr4_1:71606982-71607001 None:intergenic 30.0%
TTAGTCATATTAGACACCAT+TGG + chr4_1:71607120-71607139 Msa0569670:CDS 30.0%
TATGACATTTCACATGAATG+AGG - chr4_1:71607271-71607290 None:intergenic 30.0%
AACAATTTGACTAGAGATTC+TGG + chr4_1:71607290-71607309 Msa0569670:CDS 30.0%
! TTCTGGTGATTTTTGTGATT+TGG + chr4_1:71607307-71607326 Msa0569670:CDS 30.0%
! TCTGGTGATTTTTGTGATTT+GGG + chr4_1:71607308-71607327 Msa0569670:CDS 30.0%
CGTAACCATAATAAAAATGG+AGG + chr4_1:71607449-71607468 Msa0569670:CDS 30.0%
AACCATAATAAAAATGGAGG+TGG + chr4_1:71607452-71607471 Msa0569670:CDS 30.0%
!! AACCACCTCCATTTTTATTA+TGG - chr4_1:71607457-71607476 None:intergenic 30.0%
TAATAATGTTGGATCAGCAA+CGG - chr4_1:71607510-71607529 None:intergenic 30.0%
!! TGTATTTCTTGATTTGGCTA+GGG - chr4_1:71607634-71607653 None:intergenic 30.0%
!! AGATGTTTTAAGTGTGAGAT+TGG + chr4_1:71607860-71607879 Msa0569670:intron 30.0%
!! AGATTGGTTTCCTATGATTT+AGG + chr4_1:71607876-71607895 Msa0569670:intron 30.0%
!! AGATATAGTCTGTTTTGGAT+AGG + chr4_1:71608013-71608032 Msa0569670:intron 30.0%
GATCTTGACTCATAATGTTA+AGG - chr4_1:71608211-71608230 None:intergenic 30.0%
! TAAATGGAAAGGGTATGAAA+TGG - chr4_1:71608238-71608257 None:intergenic 30.0%
!! AACTTTGGTAATGGACTAAA+TGG - chr4_1:71608254-71608273 None:intergenic 30.0%
! TTAGTCCATTACCAAAGTTT+TGG + chr4_1:71608255-71608274 Msa0569670:intron 30.0%
ACTCTTCAAAACTACAGTAA+TGG + chr4_1:71608337-71608356 Msa0569670:intron 30.0%
GACTCTAACATTATGTGATT+TGG + chr4_1:71608383-71608402 Msa0569670:intron 30.0%
! ATGTTTACAAGTGAGTGTTT+TGG + chr4_1:71608685-71608704 Msa0569670:intron 30.0%
AACAAAAAGGAGCTAAAACA+AGG + chr4_1:71608759-71608778 Msa0569670:intron 30.0%
TCATTTCATATCAGTCTCAA+TGG + chr4_1:71609179-71609198 Msa0569670:intron 30.0%
AGTTACTATGTTAGATCGTT+GGG + chr4_1:71609509-71609528 Msa0569670:CDS 30.0%
!! TAACACCAACCTACTTTTAT+AGG + chr4_1:71609655-71609674 Msa0569670:intron 30.0%
CAATTCCTATAAAAGTAGGT+TGG - chr4_1:71609663-71609682 None:intergenic 30.0%
!! CAACCTACTTTTATAGGAAT+TGG + chr4_1:71609661-71609680 Msa0569670:intron 30.0%
CATCCAATTCCTATAAAAGT+AGG - chr4_1:71609667-71609686 None:intergenic 30.0%
! TTTACAATGATGGAACATCA+AGG - chr4_1:71609772-71609791 None:intergenic 30.0%
TTATCCTAAATTTCCCTCAT+TGG + chr4_1:71609920-71609939 Msa0569670:intron 30.0%
CTGTTTATCATACCTCTAAA+TGG + chr4_1:71609995-71610014 Msa0569670:intron 30.0%
TCAATAAAAAGGGGTAAAAG+AGG - chr4_1:71610111-71610130 None:intergenic 30.0%
CAGAAGTCTTCAATAAAAAG+GGG - chr4_1:71610120-71610139 None:intergenic 30.0%
CCAGAAGTCTTCAATAAAAA+GGG - chr4_1:71610121-71610140 None:intergenic 30.0%
ACCAGAAGTCTTCAATAAAA+AGG - chr4_1:71610122-71610141 None:intergenic 30.0%
!! CTTGAAAAGCTTTCACTTTT+GGG + chr4_1:71610192-71610211 Msa0569670:intron 30.0%
! TTTTTCATGAAGGATTCAGA+AGG + chr4_1:71610455-71610474 Msa0569670:intron 30.0%
GGCTTAATTGTGCTTAATAT+TGG + chr4_1:71610476-71610495 Msa0569670:CDS 30.0%
TCAAGTCTTCATAACAATAC+TGG + chr4_1:71610684-71610703 Msa0569670:intron 30.0%
TACATTTAGCTGAATTCTTG+AGG + chr4_1:71610748-71610767 Msa0569670:intron 30.0%
TGTTACAGTTTAGATCAGTT+TGG - chr4_1:71610846-71610865 None:intergenic 30.0%
! TTTTGAATGGCAAATGTTAG+TGG + chr4_1:71610912-71610931 Msa0569670:intron 30.0%
GAAAGCTCAAATATACTGTA+TGG - chr4_1:71611086-71611105 None:intergenic 30.0%
TCACAAGAGGTTAATGTATT+TGG + chr4_1:71611253-71611272 Msa0569670:intron 30.0%
CACAAGAGGTTAATGTATTT+GGG + chr4_1:71611254-71611273 Msa0569670:intron 30.0%
TCATCACCAAAAATAAAAGG+AGG + chr4_1:71611290-71611309 Msa0569670:intron 30.0%
ACTGAAGAGGTAGAAAAATA+TGG - chr4_1:71611613-71611632 None:intergenic 30.0%
! ATATAAGAGCGAAATTTGCT+GGG - chr4_1:71611703-71611722 None:intergenic 30.0%
!! GACAGAAGTATTATTAGAAG+CGG + chr4_1:71611822-71611841 Msa0569670:CDS 30.0%
TAAAATAGTTGCCCAACTTT+GGG + chr4_1:71611939-71611958 Msa0569670:three_prime_UTR 30.0%
CAAAAATGGTCCTATAAAAG+GGG - chr4_1:71611980-71611999 None:intergenic 30.0%
CCAAAAATGGTCCTATAAAA+GGG - chr4_1:71611981-71612000 None:intergenic 30.0%
ACCAAAAATGGTCCTATAAA+AGG - chr4_1:71611982-71612001 None:intergenic 30.0%
! TTTTCCCTCTAATCTCATTT+GGG - chr4_1:71612172-71612191 None:intergenic 30.0%
! TTTTTCCCTCTAATCTCATT+TGG - chr4_1:71612173-71612192 None:intergenic 30.0%
ATATGTTTCCTTGGAAGAAG+GGG + chr4_1:71605476-71605495 Msa0569670:five_prime_UTR 35.0%
TCATTCAAATCGATCGTGTT+AGG + chr4_1:71605672-71605691 Msa0569670:five_prime_UTR 35.0%
! GAGAGACATTGTATTGGTAT+TGG - chr4_1:71605704-71605723 None:intergenic 35.0%
GTTACAGATTCAACCTATGA+TGG - chr4_1:71605746-71605765 None:intergenic 35.0%
ACAATGTGCAAAACCAAGTT+TGG + chr4_1:71606305-71606324 Msa0569670:intron 35.0%
ACAGTTGGTTATTCCAGAAT+GGG - chr4_1:71606470-71606489 None:intergenic 35.0%
ATTGAAGGGAATATGACAGT+TGG - chr4_1:71606485-71606504 None:intergenic 35.0%
AATGGACACTAGTAGTAGTA+GGG - chr4_1:71606519-71606538 None:intergenic 35.0%
AAATGGACACTAGTAGTAGT+AGG - chr4_1:71606520-71606539 None:intergenic 35.0%
ATAAAGTATGGGCAGCAAAA+TGG - chr4_1:71606537-71606556 None:intergenic 35.0%
!! GAGTTTTGTCATGTTCGATT+TGG + chr4_1:71606689-71606708 Msa0569670:CDS 35.0%
! GCTTCCATTGCATCTATTTT+TGG + chr4_1:71606747-71606766 Msa0569670:CDS 35.0%
CCATCCAAAAATAGATGCAA+TGG - chr4_1:71606754-71606773 None:intergenic 35.0%
!!! CCATTGCATCTATTTTTGGA+TGG + chr4_1:71606751-71606770 Msa0569670:CDS 35.0%
AAACAGAAACAACAAGTGGA+TGG - chr4_1:71606954-71606973 None:intergenic 35.0%
AGTCAAACAGAAACAACAAG+TGG - chr4_1:71606958-71606977 None:intergenic 35.0%
!! CTAAATTTTGAGAAGGCCAT+AGG - chr4_1:71606983-71607002 None:intergenic 35.0%
CTATGGCCTTCTCAAAATTT+AGG + chr4_1:71606981-71607000 Msa0569670:CDS 35.0%
!! GTTGCACCTAAATTTTGAGA+AGG - chr4_1:71606990-71607009 None:intergenic 35.0%
TTCGTCACAGTAAAAACAGA+AGG - chr4_1:71607189-71607208 None:intergenic 35.0%
! TAGGAGAGGATTTTACAAAC+GGG - chr4_1:71607223-71607242 None:intergenic 35.0%
! GTAGGAGAGGATTTTACAAA+CGG - chr4_1:71607224-71607243 None:intergenic 35.0%
TTGTAAAATCCTCTCCTACA+TGG + chr4_1:71607225-71607244 Msa0569670:CDS 35.0%
! TTTGTGATTTGGGTTCTTTG+AGG + chr4_1:71607318-71607337 Msa0569670:CDS 35.0%
TCAACTTCTTTGACACAAAG+AGG - chr4_1:71607359-71607378 None:intergenic 35.0%
! GTTGATGAAAATCAAAAGGG+TGG + chr4_1:71607374-71607393 Msa0569670:CDS 35.0%
CTTTCTAATCTGACTACGAA+CGG - chr4_1:71607426-71607445 None:intergenic 35.0%
TTCGTAGTCAGATTAGAAAG+CGG + chr4_1:71607426-71607445 Msa0569670:CDS 35.0%
CGGCGTAACCATAATAAAAA+TGG + chr4_1:71607446-71607465 Msa0569670:CDS 35.0%
ATGTGTTGAACAGTCTTAAG+CGG + chr4_1:71607534-71607553 Msa0569670:CDS 35.0%
!!! ATGCTCTACCATTTTTTGTG+GGG - chr4_1:71607589-71607608 None:intergenic 35.0%
!!! GATGCTCTACCATTTTTTGT+GGG - chr4_1:71607590-71607609 None:intergenic 35.0%
!!! TGATGCTCTACCATTTTTTG+TGG - chr4_1:71607591-71607610 None:intergenic 35.0%
! ACAAAAAATGGTAGAGCATC+AGG + chr4_1:71607590-71607609 Msa0569670:CDS 35.0%
! CAAAAAATGGTAGAGCATCA+GGG + chr4_1:71607591-71607610 Msa0569670:CDS 35.0%
!! GTATTTCTTGATTTGGCTAG+GGG - chr4_1:71607633-71607652 None:intergenic 35.0%
!! GTGTATTTCTTGATTTGGCT+AGG - chr4_1:71607635-71607654 None:intergenic 35.0%
CCAACGTGTATTTCTTGATT+TGG - chr4_1:71607640-71607659 None:intergenic 35.0%
CCAAATCAAGAAATACACGT+TGG + chr4_1:71607637-71607656 Msa0569670:CDS 35.0%
!! TTGATTTGCCAAAAGATGCT+AGG + chr4_1:71607660-71607679 Msa0569670:CDS 35.0%
! GTATTGATGAAGACCAAAAG+TGG - chr4_1:71607686-71607705 None:intergenic 35.0%
TTCAATCTTCTGTGAAGAGA+AGG - chr4_1:71607731-71607750 None:intergenic 35.0%
TATGCTACTAAATCCTGTTC+AGG + chr4_1:71607751-71607770 Msa0569670:CDS 35.0%
AATCAAGTAATCACCTGAAC+AGG - chr4_1:71607767-71607786 None:intergenic 35.0%
CATGCATTCTATTGAAGTAG+TGG + chr4_1:71607799-71607818 Msa0569670:intron 35.0%
CAAGCAAACTCCTAAATCAT+AGG - chr4_1:71607889-71607908 None:intergenic 35.0%
ACGAAGGATAGATTAAAGGT+TGG - chr4_1:71607957-71607976 None:intergenic 35.0%
CAGTACGAAGGATAGATTAA+AGG - chr4_1:71607961-71607980 None:intergenic 35.0%
ATATATTCAAGGCAGTACGA+AGG - chr4_1:71607973-71607992 None:intergenic 35.0%
TCATAATGTTAAGGCCAACA+GGG - chr4_1:71608202-71608221 None:intergenic 35.0%
!! GGTAATGGACTAAATGGAAA+GGG - chr4_1:71608248-71608267 None:intergenic 35.0%
!! TGGTAATGGACTAAATGGAA+AGG - chr4_1:71608249-71608268 None:intergenic 35.0%
! TCAAAACTACAGTAATGGAG+AGG + chr4_1:71608342-71608361 Msa0569670:intron 35.0%
! CATTATGTGATTTGGATGAC+TGG + chr4_1:71608391-71608410 Msa0569670:intron 35.0%
! TTCCTGTTCTTTTCTTTGAG+AGG + chr4_1:71608470-71608489 Msa0569670:intron 35.0%
!! TCCTGTTCTTTTCTTTGAGA+GGG + chr4_1:71608471-71608490 Msa0569670:intron 35.0%
TCCTGATTGCATAAACTTGT+TGG + chr4_1:71608630-71608649 Msa0569670:intron 35.0%
! CCTGATTGCATAAACTTGTT+GGG + chr4_1:71608631-71608650 Msa0569670:intron 35.0%
ACGGTGAAAAGTCAACAAAA+AGG + chr4_1:71608746-71608765 Msa0569670:intron 35.0%
!! GAGCAAATGGTTGATGAAAA+TGG + chr4_1:71609102-71609121 Msa0569670:intron 35.0%
TTTGTATTGAGTGCTTCTCA+AGG + chr4_1:71609234-71609253 Msa0569670:CDS 35.0%
!! TTTAGAGTATTGGTTTGTGG+TGG + chr4_1:71609297-71609316 Msa0569670:CDS 35.0%
!! TTAGAGTATTGGTTTGTGGT+GGG + chr4_1:71609298-71609317 Msa0569670:CDS 35.0%
! TGTGTTTTTCTATAGCATCG+AGG - chr4_1:71609344-71609363 None:intergenic 35.0%
ATTTGTCCAGGGTTATGAAT+TGG + chr4_1:71609415-71609434 Msa0569670:CDS 35.0%
TTTGTCCAGGGTTATGAATT+GGG + chr4_1:71609416-71609435 Msa0569670:CDS 35.0%
CAGTTACTATGTTAGATCGT+TGG + chr4_1:71609508-71609527 Msa0569670:CDS 35.0%
AAATCCATGATGAACTACCT+AGG + chr4_1:71609585-71609604 Msa0569670:CDS 35.0%
! TTTGTTTCAGTGAAGTACCT+AGG - chr4_1:71609605-71609624 None:intergenic 35.0%
AGAAAACAAGAGAATTGACG+TGG - chr4_1:71609813-71609832 None:intergenic 35.0%
!! TACATTACCATTTTTACGGC+TGG + chr4_1:71609849-71609868 Msa0569670:intron 35.0%
!! ACATTACCATTTTTACGGCT+GGG + chr4_1:71609850-71609869 Msa0569670:intron 35.0%
! TTAGGATAAGTCTGAGCTTT+TGG - chr4_1:71609909-71609928 None:intergenic 35.0%
AATGCCAATGAGGGAAATTT+AGG - chr4_1:71609927-71609946 None:intergenic 35.0%
AAATTTCCCTCATTGGCATT+AGG + chr4_1:71609927-71609946 Msa0569670:intron 35.0%
AATTTCCCTCATTGGCATTA+GGG + chr4_1:71609928-71609947 Msa0569670:intron 35.0%
GGTATGATAAACAGCATAAG+AGG - chr4_1:71609989-71610008 None:intergenic 35.0%
! CCCTTTTTATTGAAGACTTC+TGG + chr4_1:71610118-71610137 Msa0569670:intron 35.0%
! GCTTGAAAAGCTTTCACTTT+TGG + chr4_1:71610191-71610210 Msa0569670:intron 35.0%
CTTAATATTGGGAGCTACAT+GGG + chr4_1:71610488-71610507 Msa0569670:CDS 35.0%
!! TTAATTTGTCCTCCTTTGTC+CGG + chr4_1:71610947-71610966 Msa0569670:intron 35.0%
GTTGTTAAAGCTATCACAAG+AGG + chr4_1:71611240-71611259 Msa0569670:intron 35.0%
AGGTTAATGTATTTGGGCTT+TGG + chr4_1:71611260-71611279 Msa0569670:intron 35.0%
!! TAATGTTTGATTTGCCCTGT+AGG + chr4_1:71611409-71611428 Msa0569670:intron 35.0%
CTTTCCCAGTTCAAATAGAT+GGG + chr4_1:71611495-71611514 Msa0569670:CDS 35.0%
TTTCCCAGTTCAAATAGATG+GGG + chr4_1:71611496-71611515 Msa0569670:CDS 35.0%
TACATAGAGTTAACTCATCG+TGG + chr4_1:71611542-71611561 Msa0569670:CDS 35.0%
ATCTGTACACATAACTGAAG+AGG - chr4_1:71611626-71611645 None:intergenic 35.0%
AAAGCTCCTAAGATTCCTAA+CGG - chr4_1:71611651-71611670 None:intergenic 35.0%
CATATAAGAGCGAAATTTGC+TGG - chr4_1:71611704-71611723 None:intergenic 35.0%
GCAAATTTCGCTCTTATATG+TGG + chr4_1:71611704-71611723 Msa0569670:intron 35.0%
ACCTGAGTATAGCAAATAAG+AGG - chr4_1:71611745-71611764 None:intergenic 35.0%
ATACTCAGGTATTCATGTTG+AGG + chr4_1:71611755-71611774 Msa0569670:intron 35.0%
ATTATTAGAAGCGGAATGCA+AGG + chr4_1:71611831-71611850 Msa0569670:CDS 35.0%
TTATTAGAAGCGGAATGCAA+GGG + chr4_1:71611832-71611851 Msa0569670:CDS 35.0%
TCAGAGAAAAGTTCTTCTCA+AGG + chr4_1:71611870-71611889 Msa0569670:CDS 35.0%
CGGATCTTAAGAAAGATTGA+TGG - chr4_1:71611902-71611921 None:intergenic 35.0%
!! AGTTGGGCAACTATTTTAGA+AGG - chr4_1:71611937-71611956 None:intergenic 35.0%
CTAAAATAGTTGCCCAACTT+TGG + chr4_1:71611938-71611957 Msa0569670:three_prime_UTR 35.0%
! CCCTTTTATAGGACCATTTT+TGG + chr4_1:71611978-71611997 Msa0569670:three_prime_UTR 35.0%
! ATCTTACATTAGCTGCTTTG+TGG - chr4_1:71612045-71612064 None:intergenic 35.0%
AACACCCAAATGAGATTAGA+GGG + chr4_1:71612165-71612184 Msa0569670:three_prime_UTR 35.0%
ATGTATATGTTCATGGGTCT+TGG + chr4_1:71612204-71612223 Msa0569670:three_prime_UTR 35.0%
! ACGAGAGAGGAATTTTGGAT+TGG - chr4_1:71605543-71605562 None:intergenic 40.0%
CTCTAGATTCCATCCATCAT+AGG + chr4_1:71605730-71605749 Msa0569670:intron 40.0%
! CAGATTCAACCTATGATGGA+TGG - chr4_1:71605742-71605761 None:intergenic 40.0%
AGTACTGTTGCAGAATAGGA+GGG - chr4_1:71605805-71605824 None:intergenic 40.0%
! AAGTACTGTTGCAGAATAGG+AGG - chr4_1:71605806-71605825 None:intergenic 40.0%
!! GGAAAGTACTGTTGCAGAAT+AGG - chr4_1:71605809-71605828 None:intergenic 40.0%
! TACAGTTCCTAGCTTGTAGT+AGG + chr4_1:71606145-71606164 Msa0569670:intron 40.0%
AATGGATCCTACTACAAGCT+AGG - chr4_1:71606155-71606174 None:intergenic 40.0%
! GCTTGTAGTAGGATCCATTT+TGG + chr4_1:71606156-71606175 Msa0569670:intron 40.0%
! TGTAGTAGGATCCATTTTGG+AGG + chr4_1:71606159-71606178 Msa0569670:intron 40.0%
!! GTAGCTTTTGACTCCAAACT+TGG - chr4_1:71606321-71606340 None:intergenic 40.0%
ATTCCAGAATGGGATTCACA+AGG - chr4_1:71606460-71606479 None:intergenic 40.0%
GACAGTTGGTTATTCCAGAA+TGG - chr4_1:71606471-71606490 None:intergenic 40.0%
!! TAGATGCAATGGAAGCATCA+GGG - chr4_1:71606743-71606762 None:intergenic 40.0%
!! ATAGATGCAATGGAAGCATC+AGG - chr4_1:71606744-71606763 None:intergenic 40.0%
!! ATTTTTGGATGGCTGATCAC+TGG + chr4_1:71606762-71606781 Msa0569670:CDS 40.0%
CTTGAGAACAGCGTATATGA+CGG - chr4_1:71606805-71606824 None:intergenic 40.0%
TCATATACGCTGTTCTCAAG+TGG + chr4_1:71606805-71606824 Msa0569670:CDS 40.0%
! CCAAACTTTCTTCTTTTCCC+TGG - chr4_1:71606868-71606887 None:intergenic 40.0%
CCAGGGAAAAGAAGAAAGTT+TGG + chr4_1:71606865-71606884 Msa0569670:CDS 40.0%
! GTTTCTGTTTGACTTCCCTA+TGG + chr4_1:71606964-71606983 Msa0569670:CDS 40.0%
TTACAGTCCTTTGCTGCATA+CGG - chr4_1:71607080-71607099 None:intergenic 40.0%
AGCAAAGGACTGTAAATGTG+TGG + chr4_1:71607085-71607104 Msa0569670:CDS 40.0%
ACACCATTGGTCAGAAAGAT+GGG + chr4_1:71607133-71607152 Msa0569670:CDS 40.0%
TAACCCATCTTTCTGACCAA+TGG - chr4_1:71607139-71607158 None:intergenic 40.0%
!! GTCAGAAAGATGGGTTAATG+TGG + chr4_1:71607142-71607161 Msa0569670:CDS 40.0%
CAAAGAGGAGAGAGGATAAT+TGG - chr4_1:71607344-71607363 None:intergenic 40.0%
CATACTAATGGTAAGTCACG+AGG + chr4_1:71607479-71607498 Msa0569670:CDS 40.0%
CTCTTTGACCCCACAAAAAA+TGG + chr4_1:71607578-71607597 Msa0569670:CDS 40.0%
! AAAAGTGGCCTAGCATCTTT+TGG - chr4_1:71607671-71607690 None:intergenic 40.0%
!! AAAAGATGCTAGGCCACTTT+TGG + chr4_1:71607670-71607689 Msa0569670:CDS 40.0%
GTCTTCATCAATACCAGAAG+TGG + chr4_1:71607692-71607711 Msa0569670:CDS 40.0%
TTCATCAATACCAGAAGTGG+TGG + chr4_1:71607695-71607714 Msa0569670:CDS 40.0%
TCATCAATACCAGAAGTGGT+GGG + chr4_1:71607696-71607715 Msa0569670:CDS 40.0%
CTCATAATGTTAAGGCCAAC+AGG - chr4_1:71608203-71608222 None:intergenic 40.0%
TCCCTCTCAAAGAAAAGAAC+AGG - chr4_1:71608475-71608494 None:intergenic 40.0%
CCCAACAAGTTTATGCAATC+AGG - chr4_1:71608634-71608653 None:intergenic 40.0%
CGGCTACATGGATCAAATTA+CGG + chr4_1:71609024-71609043 Msa0569670:intron 40.0%
! TCAATGGACATGTTCTGGTT+TGG + chr4_1:71609195-71609214 Msa0569670:intron 40.0%
!!! CTGGTTTGGCATTTTACTGT+AGG + chr4_1:71609209-71609228 Msa0569670:intron 40.0%
!! TAGAGTATTGGTTTGTGGTG+GGG + chr4_1:71609299-71609318 Msa0569670:CDS 40.0%
TTGTCCAGGGTTATGAATTG+GGG + chr4_1:71609417-71609436 Msa0569670:CDS 40.0%
GCTAATGTCATGCAAAAGCA+TGG - chr4_1:71609481-71609500 None:intergenic 40.0%
AGTACCTAGGTAGTTCATCA+TGG - chr4_1:71609592-71609611 None:intergenic 40.0%
AGGAATTGGATGTGATGCAA+AGG + chr4_1:71609675-71609694 Msa0569670:intron 40.0%
TCCTGAAAAGTTTAGTAGCC+AGG + chr4_1:71609732-71609751 Msa0569670:CDS 40.0%
! ACCTGGCTACTAAACTTTTC+AGG - chr4_1:71609736-71609755 None:intergenic 40.0%
! CAATGATGGAACATCAAGGA+GGG - chr4_1:71609768-71609787 None:intergenic 40.0%
! ACAATGATGGAACATCAAGG+AGG - chr4_1:71609769-71609788 None:intergenic 40.0%
ATATTGCCCAGCCGTAAAAA+TGG - chr4_1:71609859-71609878 None:intergenic 40.0%
CATACCTCTAAATGGAAACC+AGG + chr4_1:71610003-71610022 Msa0569670:intron 40.0%
ATCATCACTATGATCTCTCC+TGG - chr4_1:71610024-71610043 None:intergenic 40.0%
! GAGATCATAGTGATGATGAG+TGG + chr4_1:71610027-71610046 Msa0569670:intron 40.0%
! TCATAGTGATGATGAGTGGA+TGG + chr4_1:71610031-71610050 Msa0569670:intron 40.0%
AGCAATGTCACTATGGACAT+TGG + chr4_1:71610056-71610075 Msa0569670:intron 40.0%
AGAAGGAGCAAGAGACATTA+TGG + chr4_1:71610274-71610293 Msa0569670:CDS 40.0%
AAGAGACATTGAGATTCCCA+AGG + chr4_1:71610346-71610365 Msa0569670:CDS 40.0%
!! CAGCATCGGTAATTAACCTT+GGG - chr4_1:71610365-71610384 None:intergenic 40.0%
!! TCAGCATCGGTAATTAACCT+TGG - chr4_1:71610366-71610385 None:intergenic 40.0%
GCTTAATATTGGGAGCTACA+TGG + chr4_1:71610487-71610506 Msa0569670:CDS 40.0%
CTTGAGGTAGTATGTGTTTG+TGG + chr4_1:71610587-71610606 Msa0569670:CDS 40.0%
TAGTATGTGTTTGTGGAGCA+TGG + chr4_1:71610594-71610613 Msa0569670:CDS 40.0%
! TAATTTGTCCTCCTTTGTCC+GGG + chr4_1:71610948-71610967 Msa0569670:intron 40.0%
TTGTGAAAGTCCAACCTACA+GGG - chr4_1:71611426-71611445 None:intergenic 40.0%
TTGGACTTTCACAAGCAAGA+AGG + chr4_1:71611432-71611451 Msa0569670:CDS 40.0%
TATTTGAACTGGGAAAGGAC+TGG - chr4_1:71611492-71611511 None:intergenic 40.0%
CCATCTATTTGAACTGGGAA+AGG - chr4_1:71611497-71611516 None:intergenic 40.0%
CCTTTCCCAGTTCAAATAGA+TGG + chr4_1:71611494-71611513 Msa0569670:CDS 40.0%
GTTCCCCATCTATTTGAACT+GGG - chr4_1:71611502-71611521 None:intergenic 40.0%
GAACCATTTATCCTACAACC+AGG + chr4_1:71611518-71611537 Msa0569670:CDS 40.0%
TAGCCTGGTTGTAGGATAAA+TGG - chr4_1:71611524-71611543 None:intergenic 40.0%
TGAGTTAACTCTATGTAGCC+TGG - chr4_1:71611539-71611558 None:intergenic 40.0%
TATGTGTACAGATTCCCGTT+AGG + chr4_1:71611633-71611652 Msa0569670:intron 40.0%
AGATTCCCGTTAGGAATCTT+AGG + chr4_1:71611642-71611661 Msa0569670:intron 40.0%
AAGCTCCTAAGATTCCTAAC+GGG - chr4_1:71611650-71611669 None:intergenic 40.0%
!! GCCTCTTATTTGCTATACTC+AGG + chr4_1:71611741-71611760 Msa0569670:intron 40.0%
ACTTCAGAAGATGAGCCTAA+AGG + chr4_1:71611781-71611800 Msa0569670:CDS 40.0%
GTTGCAATATACACAGCCTA+GGG - chr4_1:71612092-71612111 None:intergenic 40.0%
CTCTAATCTCATTTGGGTGT+TGG - chr4_1:71612166-71612185 None:intergenic 40.0%
CAACACCCAAATGAGATTAG+AGG + chr4_1:71612164-71612183 Msa0569670:three_prime_UTR 40.0%
TTGTATACGTAGTGTGTGTG+TGG + chr4_1:71612231-71612250 Msa0569670:three_prime_UTR 40.0%
ACGTTAACAAACAGCTTCCA+AGG + chr4_1:71612266-71612285 Msa0569670:three_prime_UTR 40.0%
! CGAGAACGAGAGAGGAATTT+TGG - chr4_1:71605548-71605567 None:intergenic 45.0%
! TGATTAGCTAGCTAGCTCAG+AGG + chr4_1:71605970-71605989 Msa0569670:intron 45.0%
! GATTAGCTAGCTAGCTCAGA+GGG + chr4_1:71605971-71605990 Msa0569670:intron 45.0%
GACACTAGTAGTAGTAGGGT+AGG - chr4_1:71606515-71606534 None:intergenic 45.0%
TGGCTGATCACTGGATCATT+TGG + chr4_1:71606771-71606790 Msa0569670:CDS 45.0%
TTCCTCTGTCGGATCATTTG+TGG + chr4_1:71606901-71606920 Msa0569670:CDS 45.0%
TCCTCTGTCGGATCATTTGT+GGG + chr4_1:71606902-71606921 Msa0569670:CDS 45.0%
TTGCTGCATACGGAGAACAA+AGG - chr4_1:71607070-71607089 None:intergenic 45.0%
TTGTTCTCCGTATGCAGCAA+AGG + chr4_1:71607070-71607089 Msa0569670:CDS 45.0%
GACACCATTGGTCAGAAAGA+TGG + chr4_1:71607132-71607151 Msa0569670:CDS 45.0%
! TTTTACTGTGACGAAGCGTG+TGG + chr4_1:71607194-71607213 Msa0569670:CDS 45.0%
CTTTGACACAAAGAGGAGAG+AGG - chr4_1:71607352-71607371 None:intergenic 45.0%
AATCTGACTACGAACGGAAG+AGG - chr4_1:71607420-71607439 None:intergenic 45.0%
GGAGGTGGTTGTCATACTAA+TGG + chr4_1:71607467-71607486 Msa0569670:CDS 45.0%
AAGCGGAACAAGTACAACGA+TGG + chr4_1:71607551-71607570 Msa0569670:CDS 45.0%
AGCGGAACAAGTACAACGAT+GGG + chr4_1:71607552-71607571 Msa0569670:CDS 45.0%
! AATGGTAGAGCATCAGGGAA+TGG + chr4_1:71607596-71607615 Msa0569670:CDS 45.0%
! GGAAAGGGTATGAAATGGAG+AGG - chr4_1:71608233-71608252 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_1:71608999-71609018 Msa0569670:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_1:71609000-71609019 Msa0569670:intron 45.0%
CAGTCTCAATGGACATGTTC+TGG + chr4_1:71609190-71609209 Msa0569670:intron 45.0%
AACAATTCCAGACCTACCTC+AGG - chr4_1:71609261-71609280 None:intergenic 45.0%
GGAATAATTGCAACAGGTGG+AGG - chr4_1:71609378-71609397 None:intergenic 45.0%
AGGGGAATAATTGCAACAGG+TGG - chr4_1:71609381-71609400 None:intergenic 45.0%
CCTAGGGGAATAATTGCAAC+AGG - chr4_1:71609384-71609403 None:intergenic 45.0%
CCTGTTGCAATTATTCCCCT+AGG + chr4_1:71609381-71609400 Msa0569670:CDS 45.0%
CTTGCAGAAGAAGACTCTGA+AGG + chr4_1:71609540-71609559 Msa0569670:CDS 45.0%
AAGGAGGGAGAATATGTACC+TGG - chr4_1:71609753-71609772 None:intergenic 45.0%
TAGCACCCTAATGCCAATGA+GGG - chr4_1:71609936-71609955 None:intergenic 45.0%
TTAGCACCCTAATGCCAATG+AGG - chr4_1:71609937-71609956 None:intergenic 45.0%
CTCTCCTGGTTTCCATTTAG+AGG - chr4_1:71610010-71610029 None:intergenic 45.0%
GATGGCTAGCAATGTCACTA+TGG + chr4_1:71610049-71610068 Msa0569670:intron 45.0%
ACTTCAAGCCATACTTGCCA+TGG - chr4_1:71610320-71610339 None:intergenic 45.0%
ATGGCAAGTATGGCTTGAAG+TGG + chr4_1:71610319-71610338 Msa0569670:CDS 45.0%
CAAGTATGGCTTGAAGTGGA+CGG + chr4_1:71610323-71610342 Msa0569670:CDS 45.0%
AATATTGGGAGCTACATGGG+TGG + chr4_1:71610491-71610510 Msa0569670:CDS 45.0%
ACATGGGTGGAGTAGATCTT+TGG + chr4_1:71610504-71610523 Msa0569670:CDS 45.0%
CTCAAGCATCTTGTCATGCA+TGG - chr4_1:71610573-71610592 None:intergenic 45.0%
CATGCATGACAAGATGCTTG+AGG + chr4_1:71610571-71610590 Msa0569670:CDS 45.0%
ATAGGTCCTAGGTTCAAACC+CGG - chr4_1:71610969-71610988 None:intergenic 45.0%
!! GTTTGATTTGCCCTGTAGGT+TGG + chr4_1:71611413-71611432 Msa0569670:intron 45.0%
CTTGTGAAAGTCCAACCTAC+AGG - chr4_1:71611427-71611446 None:intergenic 45.0%
GGTTCCCCATCTATTTGAAC+TGG - chr4_1:71611503-71611522 None:intergenic 45.0%
ACTCTATGTAGCCTGGTTGT+AGG - chr4_1:71611532-71611551 None:intergenic 45.0%
AGAGTTAACTCATCGTGGAC+AGG + chr4_1:71611547-71611566 Msa0569670:CDS 45.0%
CTCAGGTATTCATGTTGAGG+AGG + chr4_1:71611758-71611777 Msa0569670:intron 45.0%
ATAGCAGCTGCTTGTCCTTT+AGG - chr4_1:71611799-71611818 None:intergenic 45.0%
TTAGAAGGCTGAACGAGAAG+CGG - chr4_1:71611922-71611941 None:intergenic 45.0%
GAGCGCAAAAACCCAAAGTT+GGG - chr4_1:71611953-71611972 None:intergenic 45.0%
ATGGTCCTATAAAAGGGGTC+TGG - chr4_1:71611975-71611994 None:intergenic 45.0%
! TTAGCTGCTTTGTGGAAGTG+TGG - chr4_1:71612037-71612056 None:intergenic 45.0%
GGTTGCAATATACACAGCCT+AGG - chr4_1:71612093-71612112 None:intergenic 45.0%
AGGCTGTGTATATTGCAACC+CGG + chr4_1:71612093-71612112 Msa0569670:three_prime_UTR 45.0%
!! TAAAAATAAATAATAATAGT+TGG + chr4_1:71605431-71605450 Msa0569670:five_prime_UTR 5.0%
GTTTCCTTGGAAGAAGGGGA+AGG + chr4_1:71605480-71605499 Msa0569670:five_prime_UTR 50.0%
CTTGGAAGAAGGGGAAGGAA+GGG + chr4_1:71605485-71605504 Msa0569670:five_prime_UTR 50.0%
TTGGAAGAAGGGGAAGGAAG+GGG + chr4_1:71605486-71605505 Msa0569670:five_prime_UTR 50.0%
! CAGCCTTGTGAATCCCATTC+TGG + chr4_1:71606454-71606473 Msa0569670:intron 50.0%
AGCGACGAGCGTCTTTGAAT+TGG + chr4_1:71606829-71606848 Msa0569670:CDS 50.0%
ATTGGATTAAAGCTGCGGCC+AGG + chr4_1:71606847-71606866 Msa0569670:CDS 50.0%
TTGGATTAAAGCTGCGGCCA+GGG + chr4_1:71606848-71606867 Msa0569670:CDS 50.0%
ACCCACAAATGATCCGACAG+AGG - chr4_1:71606906-71606925 None:intergenic 50.0%
ACAAACCGAGCAACGATGGA+GGG - chr4_1:71607030-71607049 None:intergenic 50.0%
GGACTGTAAATGTGTGGCTC+AGG + chr4_1:71607091-71607110 Msa0569670:CDS 50.0%
TGTAAATGTGTGGCTCAGGC+TGG + chr4_1:71607095-71607114 Msa0569670:CDS 50.0%
GTAAATGTGTGGCTCAGGCT+GGG + chr4_1:71607096-71607115 Msa0569670:CDS 50.0%
ACGACAATGCCATGTAGGAG+AGG - chr4_1:71607237-71607256 None:intergenic 50.0%
CTCCTACATGGCATTGTCGT+TGG + chr4_1:71607237-71607256 Msa0569670:CDS 50.0%
CACCAACGACAATGCCATGT+AGG - chr4_1:71607242-71607261 None:intergenic 50.0%
TTGTTCAGACTGTGCCCTGT+TGG + chr4_1:71608185-71608204 Msa0569670:intron 50.0%
TTCTCCTGACAATGACCCTG+TGG + chr4_1:71608586-71608605 Msa0569670:intron 50.0%
ATAGCCACAGGGTCATTGTC+AGG - chr4_1:71608593-71608612 None:intergenic 50.0%
GGACTCAAGACATAGCCACA+GGG - chr4_1:71608604-71608623 None:intergenic 50.0%
AGGACTCAAGACATAGCCAC+AGG - chr4_1:71608605-71608624 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_1:71609001-71609020 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_1:71608998-71609017 Msa0569670:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr4_1:71609004-71609023 Msa0569670:intron 50.0%
!! GTATTGGTTTGTGGTGGGGA+TGG + chr4_1:71609303-71609322 Msa0569670:CDS 50.0%
TCCAGGGTTATGAATTGGGG+AGG + chr4_1:71609420-71609439 Msa0569670:CDS 50.0%
TCCTCCCCAATTCATAACCC+TGG - chr4_1:71609424-71609443 None:intergenic 50.0%
AGGGTTATGAATTGGGGAGG+AGG + chr4_1:71609423-71609442 Msa0569670:CDS 50.0%
TTCTCTGCACTGGATGGACA+GGG + chr4_1:71609447-71609466 Msa0569670:CDS 50.0%
!! GAACTTGTGCTGACTTGCCA+TGG + chr4_1:71610300-71610319 Msa0569670:CDS 50.0%
! CTGACTTGCCATGGCAAGTA+TGG + chr4_1:71610309-71610328 Msa0569670:CDS 50.0%
CCTATACCTGAAGTTTCCCC+AGG - chr4_1:71610622-71610641 None:intergenic 50.0%
CCTGGGGAAACTTCAGGTAT+AGG + chr4_1:71610619-71610638 Msa0569670:intron 50.0%
CTAGGTTCAAACCCGGACAA+AGG - chr4_1:71610962-71610981 None:intergenic 50.0%
CTTTGTCCGGGTTTGAACCT+AGG + chr4_1:71610960-71610979 Msa0569670:intron 50.0%
! CAAGCAAGAAGGCTAGCTCA+AGG + chr4_1:71611443-71611462 Msa0569670:CDS 50.0%
GGAGCGCAAAAACCCAAAGT+TGG - chr4_1:71611954-71611973 None:intergenic 50.0%
ACTGTTGCGTCTAACACCCT+AGG + chr4_1:71612073-71612092 Msa0569670:three_prime_UTR 50.0%
CCTTCCTTCCCCTTCTTCCA+AGG - chr4_1:71605487-71605506 None:intergenic 55.0%
CCTTGGAAGAAGGGGAAGGA+AGG + chr4_1:71605484-71605503 Msa0569670:five_prime_UTR 55.0%
TGGAAGAAGGGGAAGGAAGG+GGG + chr4_1:71605487-71605506 Msa0569670:five_prime_UTR 55.0%
GAAGGAAGGGGGGTTGTAAC+AGG + chr4_1:71605498-71605517 Msa0569670:five_prime_UTR 55.0%
CTGAAGAGCGAGAACGAGAG+AGG - chr4_1:71605556-71605575 None:intergenic 55.0%
CTCTCTCGTTCTCGCTCTTC+AGG + chr4_1:71605554-71605573 Msa0569670:five_prime_UTR 55.0%
TAGCTAGCTAGCTCAGAGGG+TGG + chr4_1:71605974-71605993 Msa0569670:intron 55.0%
TACTCCCCTCCATCGTTGCT+CGG + chr4_1:71607022-71607041 Msa0569670:CDS 55.0%
CAAACCGAGCAACGATGGAG+GGG - chr4_1:71607029-71607048 None:intergenic 55.0%
CACAAACCGAGCAACGATGG+AGG - chr4_1:71607031-71607050 None:intergenic 55.0%
! CTCCATCGTTGCTCGGTTTG+TGG + chr4_1:71607029-71607048 Msa0569670:CDS 55.0%
CACCACAAACCGAGCAACGA+TGG - chr4_1:71607034-71607053 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr4_1:71609006-71609025 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr4_1:71609012-71609031 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4_1:71609013-71609032 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4_1:71609012-71609031 Msa0569670:intron 55.0%
GAGTGCTTCTCAAGGTCCTG+AGG + chr4_1:71609242-71609261 Msa0569670:CDS 55.0%
GCTTCTCAAGGTCCTGAGGT+AGG + chr4_1:71609246-71609265 Msa0569670:CDS 55.0%
TCAAGGTCCTGAGGTAGGTC+TGG + chr4_1:71609251-71609270 Msa0569670:CDS 55.0%
TGGGGATGGCACTGTTGCAT+GGG + chr4_1:71609317-71609336 Msa0569670:CDS 55.0%
CTTCTCTGCACTGGATGGAC+AGG + chr4_1:71609446-71609465 Msa0569670:CDS 55.0%
TGTTTGTGGAGCATGGCACC+TGG + chr4_1:71610601-71610620 Msa0569670:CDS 55.0%
GTTTGTGGAGCATGGCACCT+GGG + chr4_1:71610602-71610621 Msa0569670:CDS 55.0%
TTTGTGGAGCATGGCACCTG+GGG + chr4_1:71610603-71610622 Msa0569670:CDS 55.0%
ATGGCACCTGGGGAAACTTC+AGG + chr4_1:71610613-71610632 Msa0569670:CDS 55.0%
GGTTCAAACCCGGACAAAGG+AGG - chr4_1:71610959-71610978 None:intergenic 55.0%
! GCGCTCCAGACCCCTTTTAT+AGG + chr4_1:71611967-71611986 Msa0569670:three_prime_UTR 55.0%
GGAAGAAGGGGAAGGAAGGG+GGG + chr4_1:71605488-71605507 Msa0569670:five_prime_UTR 60.0%
! ATGGAGGGGAGTACGTGGTG+AGG - chr4_1:71607015-71607034 None:intergenic 60.0%
! CAACGATGGAGGGGAGTACG+TGG - chr4_1:71607020-71607039 None:intergenic 60.0%
!! ACCAGAAGTGGTGGGCAGCT+TGG + chr4_1:71607704-71607723 Msa0569670:CDS 60.0%
!! CCAGAAGTGGTGGGCAGCTT+GGG + chr4_1:71607705-71607724 Msa0569670:CDS 60.0%
GTGGGGATGGCACTGTTGCA+TGG + chr4_1:71609316-71609335 Msa0569670:CDS 60.0%
GGAGGCTTCTCTGCACTGGA+TGG + chr4_1:71609441-71609460 Msa0569670:CDS 60.0%
TCTGCACTGGATGGACAGGG+CGG + chr4_1:71609450-71609469 Msa0569670:CDS 60.0%
CCCAAGCTGCCCACCACTTC+TGG - chr4_1:71607708-71607727 None:intergenic 65.0%
GGGAGGAGGCTTCTCTGCAC+TGG + chr4_1:71609437-71609456 Msa0569670:CDS 65.0%
CTGCACTGGATGGACAGGGC+GGG + chr4_1:71609451-71609470 Msa0569670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 71605410 71612301 71605410 ID=Msa0569670;Name=Msa0569670
chr4_1 mRNA 71605410 71612301 71605410 ID=Msa0569670-mRNA-1;Parent=Msa0569670;Name=Msa0569670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=315|1|1|1|0.85|0.75|8|386|705
chr4_1 exon 71605410 71605693 71605410 ID=Msa0569670-mRNA-1:exon:24360;Parent=Msa0569670-mRNA-1
chr4_1 exon 71606656 71607772 71606656 ID=Msa0569670-mRNA-1:exon:24361;Parent=Msa0569670-mRNA-1
chr4_1 exon 71609231 71609606 71609231 ID=Msa0569670-mRNA-1:exon:24362;Parent=Msa0569670-mRNA-1
chr4_1 exon 71609677 71609753 71609677 ID=Msa0569670-mRNA-1:exon:24363;Parent=Msa0569670-mRNA-1
chr4_1 exon 71610248 71610367 71610248 ID=Msa0569670-mRNA-1:exon:24364;Parent=Msa0569670-mRNA-1
chr4_1 exon 71610467 71610634 71610467 ID=Msa0569670-mRNA-1:exon:24365;Parent=Msa0569670-mRNA-1
chr4_1 exon 71611431 71611568 71611431 ID=Msa0569670-mRNA-1:exon:24366;Parent=Msa0569670-mRNA-1
chr4_1 exon 71611763 71612301 71611763 ID=Msa0569670-mRNA-1:exon:24367;Parent=Msa0569670-mRNA-1
chr4_1 five_prime_UTR 71605410 71605693 71605410 ID=Msa0569670-mRNA-1:five_prime_utr;Parent=Msa0569670-mRNA-1
chr4_1 five_prime_UTR 71606656 71606686 71606656 ID=Msa0569670-mRNA-1:five_prime_utr;Parent=Msa0569670-mRNA-1
chr4_1 CDS 71606687 71607772 71606687 ID=Msa0569670-mRNA-1:cds;Parent=Msa0569670-mRNA-1
chr4_1 CDS 71609231 71609606 71609231 ID=Msa0569670-mRNA-1:cds;Parent=Msa0569670-mRNA-1
chr4_1 CDS 71609677 71609753 71609677 ID=Msa0569670-mRNA-1:cds;Parent=Msa0569670-mRNA-1
chr4_1 CDS 71610248 71610367 71610248 ID=Msa0569670-mRNA-1:cds;Parent=Msa0569670-mRNA-1
chr4_1 CDS 71610467 71610634 71610467 ID=Msa0569670-mRNA-1:cds;Parent=Msa0569670-mRNA-1
chr4_1 CDS 71611431 71611568 71611431 ID=Msa0569670-mRNA-1:cds;Parent=Msa0569670-mRNA-1
chr4_1 CDS 71611763 71611915 71611763 ID=Msa0569670-mRNA-1:cds;Parent=Msa0569670-mRNA-1
chr4_1 three_prime_UTR 71611916 71612301 71611916 ID=Msa0569670-mRNA-1:three_prime_utr;Parent=Msa0569670-mRNA-1
Gene Sequence

>Msa0569670

ATGAGTTTTGTCATGTTCGATTTGGGAATTGTAATTTTGAGGTTTCTTACAAGCCCTGATGCTTCCATTGCATCTATTTTTGGATGGCTGATCACTGGATCATTTGGACTTGTAGCCGTCATATACGCTGTTCTCAAGTGGCAGCGACGAGCGTCTTTGAATTGGATTAAAGCTGCGGCCAGGGAAAAGAAGAAAGTTTGGAAAAAATTTAAAGTTCCTCTGTCGGATCATTTGTGGGTTGAAGATTTTACTTATGGGGAACAACCATCCACTTGTTGTTTCTGTTTGACTTCCCTATGGCCTTCTCAAAATTTAGGTGCAACAGCCTCACCACGTACTCCCCTCCATCGTTGCTCGGTTTGTGGTGTCGCAGCTCATTTCCTTTGTTCTCCGTATGCAGCAAAGGACTGTAAATGTGTGGCTCAGGCTGGGTTTAGTCATATTAGACACCATTGGTCAGAAAGATGGGTTAATGTGGATGATCATCATGAGATGTCTGCCTTCTGTTTTTACTGTGACGAAGCGTGTGGTGTCCCGTTTGTAAAATCCTCTCCTACATGGCATTGTCGTTGGTGTCAGCGCCTCATTCATGTGAAATGTCATAACAATTTGACTAGAGATTCTGGTGATTTTTGTGATTTGGGTTCTTTGAGGCCAATTATCCTCTCTCCTCTTTGTGTCAAAGAAGTTGATGAAAATCAAAAGGGTGGAAAACTAAGTTCTATTATAACCTCTTCCGTTCGTAGTCAGATTAGAAAGCGGCGTAACCATAATAAAAATGGAGGTGGTTGTCATACTAATGGTAAGTCACGAGGTTCAGCCGTTGCTGATCCAACATTATTAGAATATGTGTTGAACAGTCTTAAGCGGAACAAGTACAACGATGGGAAGCTCTTTGACCCCACAAAAAATGGTAGAGCATCAGGGAATGGTTTAAATGTTACCCCTAGCCAAATCAAGAAATACACGTTGGTTGATTTGCCAAAAGATGCTAGGCCACTTTTGGTCTTCATCAATACCAGAAGTGGTGGGCAGCTTGGGCCTTCTCTTCACAGAAGATTGAATATGCTACTAAATCCTGTTCAGGTCTTTGTATTGAGTGCTTCTCAAGGTCCTGAGGTAGGTCTGGAATTGTTCAAAAGTGTACCATATTTTAGAGTATTGGTTTGTGGTGGGGATGGCACTGTTGCATGGGTCCTCGATGCTATAGAAAAACACAATTTTGAGTCACCTCCACCTGTTGCAATTATTCCCCTAGGCACTGGAAATGATTTGTCCAGGGTTATGAATTGGGGAGGAGGCTTCTCTGCACTGGATGGACAGGGCGGGCTGACCATGCTTTTGCATGACATTAGCATTGCAGCAGTTACTATGTTAGATCGTTGGGAAGTTAAACTTGCAGAAGAAGACTCTGAAGGAAAACCACATAAAGTGAAAACTAAATCCATGATGAACTACCTAGGAATTGGATGTGATGCAAAGGTTGCATATGAATTTCATGTTACTCGAGAGATAAATCCTGAAAAGTTTAGTAGCCAGTTTTTTAATAAATTACGATATGCAAAAGAAGGAGCAAGAGACATTATGGACAGAACTTGTGCTGACTTGCCATGGCAAGTATGGCTTGAAGTGGACGGAAGAGACATTGAGATTCCCAAGGATTCAGAAGGCTTAATTGTGCTTAATATTGGGAGCTACATGGGTGGAGTAGATCTTTGGAAAAATGACTATGAGCATGATGATGATGATTTCAGTCTTCAATCCATGCATGACAAGATGCTTGAGGTAGTATGTGTTTGTGGAGCATGGCACCTGGGGAAACTTCAGGTTGGACTTTCACAAGCAAGAAGGCTAGCTCAAGGCAAAGTCATCAAGATACACTCTTCCAGTCCTTTCCCAGTTCAAATAGATGGGGAACCATTTATCCTACAACCAGGCTACATAGAGTTAACTCATCGTGGACAGGTATTCATGTTGAGGAGGACTTCAGAAGATGAGCCTAAAGGACAAGCAGCTGCTATAATGACAGAAGTATTATTAGAAGCGGAATGCAAGGGCATTATTAATACATCTCAGAGAAAAGTTCTTCTCAAGGACATAGCCATCAATCTTTCTTAA
Protein sequence

>Msa0569670

MSFVMFDLGIVILRFLTSPDASIASIFGWLITGSFGLVAVIYAVLKWQRRASLNWIKAAAREKKKVWKKFKVPLSDHLWVEDFTYGEQPSTCCFCLTSLWPSQNLGATASPRTPLHRCSVCGVAAHFLCSPYAAKDCKCVAQAGFSHIRHHWSERWVNVDDHHEMSAFCFYCDEACGVPFVKSSPTWHCRWCQRLIHVKCHNNLTRDSGDFCDLGSLRPIILSPLCVKEVDENQKGGKLSSIITSSVRSQIRKRRNHNKNGGGCHTNGKSRGSAVADPTLLEYVLNSLKRNKYNDGKLFDPTKNGRASGNGLNVTPSQIKKYTLVDLPKDARPLLVFINTRSGGQLGPSLHRRLNMLLNPVQVFVLSASQGPEVGLELFKSVPYFRVLVCGGDGTVAWVLDAIEKHNFESPPPVAIIPLGTGNDLSRVMNWGGGFSALDGQGGLTMLLHDISIAAVTMLDRWEVKLAEEDSEGKPHKVKTKSMMNYLGIGCDAKVAYEFHVTREINPEKFSSQFFNKLRYAKEGARDIMDRTCADLPWQVWLEVDGRDIEIPKDSEGLIVLNIGSYMGGVDLWKNDYEHDDDDFSLQSMHDKMLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIKIHSSSPFPVQIDGEPFILQPGYIELTHRGQVFMLRRTSEDEPKGQAAAIMTEVLLEAECKGIINTSQRKVLLKDIAINLS*