AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0659690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659690 MtrunA17_Chr8g0384961 98.723 705 9 0 1 705 1 705 0.0 1449
Msa0659690 MtrunA17_Chr4g0061331 50.141 708 320 9 26 705 25 727 0.0 704
Msa0659690 MtrunA17_Chr8g0360931 29.219 397 211 11 331 659 34 428 2.86e-37 145
Msa0659690 MtrunA17_Chr2g0323521 29.665 418 222 13 310 659 16 429 4.22e-37 145
Msa0659690 MtrunA17_Chr4g0022651 29.567 416 219 14 314 659 17 428 6.28e-37 144
Msa0659690 MtrunA17_Chr4g0072941 31.746 378 182 13 333 641 85 455 7.44e-37 144
Msa0659690 MtrunA17_Chr2g0305591 29.365 378 193 12 332 641 92 463 9.14e-33 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659690 AT5G63770.1 66.760 716 219 6 5 705 1 712 0.0 980
Msa0659690 AT5G63770.2 66.760 716 219 6 5 705 1 712 0.0 980
Msa0659690 AT5G07920.3 50.494 709 313 11 26 705 29 728 0.0 696
Msa0659690 AT5G07920.1 50.494 709 313 11 26 705 29 728 0.0 696
Msa0659690 AT5G07920.2 50.453 662 291 10 26 658 29 682 0.0 649
Msa0659690 AT2G20900.3 29.574 399 212 12 328 659 35 431 2.55e-36 143
Msa0659690 AT2G20900.2 29.574 399 212 12 328 659 35 431 2.55e-36 143
Msa0659690 AT2G20900.4 29.574 399 212 12 328 659 35 431 2.86e-36 144
Msa0659690 AT2G20900.1 29.574 399 212 12 328 659 35 431 2.86e-36 144
Msa0659690 AT4G28130.1 27.692 390 215 11 333 659 47 432 6.03e-36 142
Msa0659690 AT5G57690.1 29.058 382 187 12 333 641 90 460 1.67e-35 141
Msa0659690 AT2G18730.1 30.343 379 186 13 333 641 91 461 1.05e-33 135
Msa0659690 AT4G30340.1 29.319 382 187 13 333 641 94 465 3.08e-33 134
Msa0659690 AT4G30340.2 33.755 237 105 8 333 521 94 326 9.34e-27 113

Find 204 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGAACGAGAGAGGAATTT+TGG 0.117261 4_3:-70044834 None:intergenic
CTATGGCCTTCTCAAAATTT+AGG 0.158150 4_3:+70046269 Msa0659690:CDS
AATGATCAGGTTGTACATTT+TGG 0.221591 4_3:+70045935 Msa0659690:intron
CTCTCTCGTTCTCGCTCTTC+AGG 0.227603 4_3:+70044843 Msa0659690:five_prime_UTR
GGCTTAATTGTGCTTAATAT+TGG 0.236352 4_3:+70049754 Msa0659690:CDS
CCAACGTGTATTTCTTGATT+TGG 0.257432 4_3:-70046925 None:intergenic
AACAATTTGACTAGAGATTC+TGG 0.272349 4_3:+70046578 Msa0659690:CDS
CCCAAGCTGCCCACCACTTC+TGG 0.283169 4_3:-70046993 None:intergenic
CCTTTCCCAGTTCAAATAGA+TGG 0.283248 4_3:+70050689 Msa0659690:CDS
CTAAAATAGTTGCCCAACTT+TGG 0.307010 4_3:+70051133 Msa0659690:three_prime_UTR
CAAAGAGGAGAGAGGATAAT+TGG 0.308348 4_3:-70046629 None:intergenic
CTGACTTGCCATGGCAAGTA+TGG 0.313060 4_3:+70049587 Msa0659690:CDS
CAAACCAATACTCTAAAATA+TGG 0.318489 4_3:-70048576 None:intergenic
ATTTGTCCAGGGTTATGAAT+TGG 0.320327 4_3:+70048700 Msa0659690:CDS
AAAAGATGCTAGGCCACTTT+TGG 0.323510 4_3:+70046958 Msa0659690:CDS
TAGCCTGGTTGTAGGATAAA+TGG 0.328389 4_3:-70050716 None:intergenic
AGAAGGAGCAAGAGACATTA+TGG 0.333839 4_3:+70049552 Msa0659690:CDS
ATAGCAGCTGCTTGTCCTTT+AGG 0.335006 4_3:-70050991 None:intergenic
GCTTAATTGTGCTTAATATT+GGG 0.337779 4_3:+70049755 Msa0659690:CDS
TGGCTGATCACTGGATCATT+TGG 0.342110 4_3:+70046059 Msa0659690:CDS
GGTTCCCCATCTATTTGAAC+TGG 0.347647 4_3:-70050695 None:intergenic
AAAAGTGGCCTAGCATCTTT+TGG 0.355294 4_3:-70046956 None:intergenic
TAAAATAGTTGCCCAACTTT+GGG 0.363670 4_3:+70051134 Msa0659690:three_prime_UTR
TTTGTCCAGGGTTATGAATT+GGG 0.365198 4_3:+70048701 Msa0659690:CDS
GGGAAGGAAGGGGTTGTAAC+AGG 0.368252 4_3:+70044787 Msa0659690:five_prime_UTR
CCAGAAGTGGTGGGCAGCTT+GGG 0.370938 4_3:+70046993 Msa0659690:CDS
TACTGATATGTATATGTTCA+TGG 0.373326 4_3:+70051393 Msa0659690:three_prime_UTR
TGTAAATGTGTGGCTCAGGC+TGG 0.373393 4_3:+70046383 Msa0659690:CDS
CTCCATCGTTGCTCGGTTTG+TGG 0.376745 4_3:+70046317 Msa0659690:CDS
ACATGGGTGGAGTAGATCTT+TGG 0.383148 4_3:+70049782 Msa0659690:CDS
CTCTAATCTCATTTGGGTGT+TGG 0.384881 4_3:-70051359 None:intergenic
GCGGGGATGGCACTGTTGCA+TGG 0.389027 4_3:+70048601 Msa0659690:CDS
CTTCTCTGCACTGGATGGAC+AGG 0.393997 4_3:+70048731 Msa0659690:CDS
AGCGACGAGCGTCTTTGAAT+TGG 0.396069 4_3:+70046117 Msa0659690:CDS
TTCCTCTGTCGGATCATTTG+TGG 0.397710 4_3:+70046189 Msa0659690:CDS
CGATTTGAATGAGATCAAAA+TGG 0.403141 4_3:-70044944 None:intergenic
ATCTTACATTAGCTGCTTTG+TGG 0.403557 4_3:-70051237 None:intergenic
AGTTACTATGTTAGATCGTT+GGG 0.404411 4_3:+70048794 Msa0659690:CDS
TCATTCAAATCGATCGTGTT+AGG 0.407253 4_3:+70044955 Msa0659690:five_prime_UTR
ACCAGAAGTGGTGGGCAGCT+TGG 0.411845 4_3:+70046992 Msa0659690:CDS
CCAGGGAAAAGAAGAAAGTT+TGG 0.416730 4_3:+70046153 Msa0659690:CDS
TCCTCTGTCGGATCATTTGT+GGG 0.421592 4_3:+70046190 Msa0659690:CDS
GACACCATTGGTCAGAAAGA+TGG 0.424732 4_3:+70046420 Msa0659690:CDS
AATCAAGTAATCACCTGAAC+AGG 0.428109 4_3:-70047052 None:intergenic
AGAAGTTGATGAAAATCAAA+AGG 0.428769 4_3:+70046658 Msa0659690:CDS
TATGCTACTAAATCCTGTTC+AGG 0.429704 4_3:+70047039 Msa0659690:CDS
AATAAAATAATATGTTTCCT+TGG 0.430920 4_3:+70044758 Msa0659690:five_prime_UTR
TCAAGGTCCTGAGGTAGGTC+TGG 0.435183 4_3:+70048536 Msa0659690:CDS
CGGGGATGGCACTGTTGCAT+GGG 0.436182 4_3:+70048602 Msa0659690:CDS
GGGAGGAGGCTTCTCTGCAC+TGG 0.438297 4_3:+70048722 Msa0659690:CDS
ACTCTATGTAGCCTGGTTGT+AGG 0.440612 4_3:-70050724 None:intergenic
ATGGCACCTGGGGAAACTTC+AGG 0.443641 4_3:+70049891 Msa0659690:CDS
ATGTATATGTTCATGGGTCT+TGG 0.444422 4_3:+70051400 Msa0659690:three_prime_UTR
ATAGATGCAATGGAAGCATC+AGG 0.447107 4_3:-70046029 None:intergenic
CTTGAGGTAGTATGTGTTTG+TGG 0.447255 4_3:+70049865 Msa0659690:CDS
TACTCCCCTCCATCGTTGCT+CGG 0.452691 4_3:+70046310 Msa0659690:CDS
GGAGGTGGTTGTCATACTAA+TGG 0.454823 4_3:+70046755 Msa0659690:CDS
TAATATGTTTCCTTGGAAGA+AGG 0.460923 4_3:+70044765 Msa0659690:five_prime_UTR
CAACACCCAAATGAGATTAG+AGG 0.461132 4_3:+70051360 Msa0659690:three_prime_UTR
GTGTATTTCTTGATTTGGCT+AGG 0.463049 4_3:-70046920 None:intergenic
AACACATATTCTAATAATGT+TGG 0.469885 4_3:-70046806 None:intergenic
CCTTCCTTCCCCTTCTTCCA+AGG 0.471623 4_3:-70044775 None:intergenic
GCAATTATTCCCCTAGGCAC+TGG 0.473554 4_3:+70048672 Msa0659690:CDS
CTTTCCCAGTTCAAATAGAT+GGG 0.476790 4_3:+70050690 Msa0659690:CDS
TCCTGAAAAGTTTAGTAGCC+AGG 0.480291 4_3:+70049017 Msa0659690:CDS
ATTGGATTAAAGCTGCGGCC+AGG 0.481183 4_3:+70046135 Msa0659690:CDS
TGTATTTCTTGATTTGGCTA+GGG 0.481749 4_3:-70046919 None:intergenic
CTTGGAAGAAGGGGAAGGAA+GGG 0.486629 4_3:+70044776 Msa0659690:five_prime_UTR
TTAGAGTATTGGTTTGTGGC+GGG 0.486814 4_3:+70048583 Msa0659690:CDS
CAAATCATTTCCAGTGCCTA+GGG 0.490800 4_3:-70048682 None:intergenic
CTCCTACATGGCATTGTCGT+TGG 0.492326 4_3:+70046525 Msa0659690:CDS
TCAACTTCTTTGACACAAAG+AGG 0.493022 4_3:-70046644 None:intergenic
AATATGTTTCCTTGGAAGAA+GGG 0.493561 4_3:+70044766 Msa0659690:five_prime_UTR
CCTAGGGGAATAATTGCAAC+AGG 0.494366 4_3:-70048666 None:intergenic
GCACTGGAAATGATTTGTCC+AGG 0.495702 4_3:+70048688 Msa0659690:CDS
TGTTTGTGGAGCATGGCACC+TGG 0.496233 4_3:+70049879 Msa0659690:CDS
TTACAGTCCTTTGCTGCATA+CGG 0.496296 4_3:-70046365 None:intergenic
ACACCATTGGTCAGAAAGAT+GGG 0.497299 4_3:+70046421 Msa0659690:CDS
ATGGTCCTATAAAAGGGGTC+TGG 0.497596 4_3:-70051167 None:intergenic
GGAATAATTGCAACAGGTGG+AGG 0.497750 4_3:-70048660 None:intergenic
CAGTTACTATGTTAGATCGT+TGG 0.497824 4_3:+70048793 Msa0659690:CDS
AAATAAATAATAATAATAGT+TGG 0.498113 4_3:+70044722 Msa0659690:five_prime_UTR
CCTTGGAAGAAGGGGAAGGA+AGG 0.498394 4_3:+70044775 Msa0659690:five_prime_UTR
CGGATCTTAAGAAAGATTGA+TGG 0.504050 4_3:-70051094 None:intergenic
TTTGTGATTTGGGTTCTTTG+AGG 0.504434 4_3:+70046606 Msa0659690:CDS
CTCAAGCATCTTGTCATGCA+TGG 0.504681 4_3:-70049848 None:intergenic
GTTTCTGTTTGACTTCCCTA+TGG 0.506997 4_3:+70046252 Msa0659690:CDS
GCTTAATATTGGGAGCTACA+TGG 0.509872 4_3:+70049765 Msa0659690:CDS
TTGGATTAAAGCTGCGGCCA+GGG 0.511143 4_3:+70046136 Msa0659690:CDS
TTGGAAGAAGGGGAAGGAAG+GGG 0.512346 4_3:+70044777 Msa0659690:five_prime_UTR
CACCACAAACCGAGCAACGA+TGG 0.514753 4_3:-70046319 None:intergenic
CCATCTATTTGAACTGGGAA+AGG 0.516877 4_3:-70050689 None:intergenic
AGGGTTATGAATTGGGGAGG+AGG 0.517441 4_3:+70048708 Msa0659690:CDS
CTGCACTGGATGGACAGGGC+GGG 0.519579 4_3:+70048736 Msa0659690:CDS
GTATTGGTTTGTGGCGGGGA+TGG 0.520136 4_3:+70048588 Msa0659690:CDS
GTAAATGTGTGGCTCAGGCT+GGG 0.521953 4_3:+70046384 Msa0659690:CDS
GGAGGCTTCTCTGCACTGGA+TGG 0.522202 4_3:+70048726 Msa0659690:CDS
TATGACATTTCACATGAATG+AGG 0.525047 4_3:-70046556 None:intergenic
TTAGTCATATTAGACACCAT+TGG 0.526392 4_3:+70046408 Msa0659690:CDS
AAGTTAACAAACAGCTTCCA+AGG 0.526457 4_3:+70051462 Msa0659690:three_prime_UTR
TTGTAAAATCCTCTCCTACA+TGG 0.527594 4_3:+70046513 Msa0659690:CDS
GGACTGTAAATGTGTGGCTC+AGG 0.529683 4_3:+70046379 Msa0659690:CDS
TTGTTCTCCGTATGCAGCAA+AGG 0.536894 4_3:+70046358 Msa0659690:CDS
TTGATTTGCCAAAAGATGCT+AGG 0.537796 4_3:+70046948 Msa0659690:CDS
AAATTACGATATGCAAAAGA+AGG 0.539584 4_3:+70049535 Msa0659690:CDS
CCTATACCTGAAGTTTCCCC+AGG 0.540525 4_3:-70049897 None:intergenic
TTCATCAATACCAGAAGTGG+TGG 0.542080 4_3:+70046983 Msa0659690:CDS
AAAATTTAAAGTTCCTCTGT+CGG 0.542199 4_3:+70046178 Msa0659690:CDS
TTGTCCAGGGTTATGAATTG+GGG 0.543064 4_3:+70048702 Msa0659690:CDS
TAACCCATCTTTCTGACCAA+TGG 0.545670 4_3:-70046424 None:intergenic
GAAGTTGATGAAAATCAAAA+GGG 0.545718 4_3:+70046659 Msa0659690:CDS
CACTGGAAATGATTTGTCCA+GGG 0.546870 4_3:+70048689 Msa0659690:CDS
TAGAGTATTGGTTTGTGGCG+GGG 0.547599 4_3:+70048584 Msa0659690:CDS
CTTAATATTGGGAGCTACAT+GGG 0.548113 4_3:+70049766 Msa0659690:CDS
GTTGATGAAAATCAAAAGGG+TGG 0.550454 4_3:+70046662 Msa0659690:CDS
TTTGTATTGAGTGCTTCTCA+AGG 0.550465 4_3:+70048519 Msa0659690:CDS
GGTTGCAATATACACAGCCT+AGG 0.551123 4_3:-70051285 None:intergenic
GTATTTCTTGATTTGGCTAG+GGG 0.552227 4_3:-70046918 None:intergenic
TTCAATCTTCTGTGAAGAGA+AGG 0.552681 4_3:-70047016 None:intergenic
ACAAACCGAGCAACGATGGA+GGG 0.557150 4_3:-70046315 None:intergenic
GACAGAAGTATTATTAGAAG+CGG 0.557422 4_3:+70051017 Msa0659690:CDS
TTCTCTGCACTGGATGGACA+GGG 0.560238 4_3:+70048732 Msa0659690:CDS
TGAGTTAACTCTATGTAGCC+TGG 0.560280 4_3:-70050731 None:intergenic
CCTGTTGCAATTATTCCCCT+AGG 0.560632 4_3:+70048666 Msa0659690:CDS
ATTATTAGAAGCGGAATGCA+AGG 0.561033 4_3:+70051026 Msa0659690:CDS
TCCTCCCCAATTCATAACCC+TGG 0.562331 4_3:-70048706 None:intergenic
AATGGTAGAGCATCAGGGAA+TGG 0.563261 4_3:+70046884 Msa0659690:CDS
AACAATTCCAGACCTACCTC+AGG 0.563599 4_3:-70048543 None:intergenic
ACTGATATGTATATGTTCAT+GGG 0.564421 4_3:+70051394 Msa0659690:three_prime_UTR
ATATGTTTCCTTGGAAGAAG+GGG 0.566391 4_3:+70044767 Msa0659690:five_prime_UTR
GTCTTCATCAATACCAGAAG+TGG 0.567567 4_3:+70046980 Msa0659690:CDS
AGAGTTAACTCATCGTGGAC+AGG 0.568974 4_3:+70050742 Msa0659690:CDS
AACACCCAAATGAGATTAGA+GGG 0.570406 4_3:+70051361 Msa0659690:three_prime_UTR
GCTTCTCAAGGTCCTGAGGT+AGG 0.571347 4_3:+70048531 Msa0659690:CDS
TAGTATGTGTTTGTGGAGCA+TGG 0.572843 4_3:+70049872 Msa0659690:CDS
CACAAACCGAGCAACGATGG+AGG 0.572989 4_3:-70046316 None:intergenic
TTGGACTTTCACAAGCAAGA+AGG 0.573900 4_3:+70050627 Msa0659690:CDS
ACTTCAGAAGATGAGCCTAA+AGG 0.574123 4_3:+70050976 Msa0659690:CDS
TCAGAGAAAAGTTCTTCTCA+AGG 0.575293 4_3:+70051065 Msa0659690:CDS
TCCAGGGTTATGAATTGGGG+AGG 0.578634 4_3:+70048705 Msa0659690:CDS
ACAAATCATTTCCAGTGCCT+AGG 0.580261 4_3:-70048683 None:intergenic
AGTACCTAGGTAGTTCATCA+TGG 0.582057 4_3:-70048874 None:intergenic
TTTAGAGTATTGGTTTGTGG+CGG 0.586035 4_3:+70048582 Msa0659690:CDS
GTTCCCCATCTATTTGAACT+GGG 0.587718 4_3:-70050694 None:intergenic
ATACTCAGGTATTCATGTTG+AGG 0.588169 4_3:+70050950 Msa0659690:intron
GAACTTGTGCTGACTTGCCA+TGG 0.588243 4_3:+70049578 Msa0659690:CDS
AGCGGAACAAGTACAACGAT+GGG 0.589787 4_3:+70046840 Msa0659690:CDS
TTAGAAGGCTGAACGAGAAG+CGG 0.593274 4_3:-70051114 None:intergenic
CTCAGGTATTCATGTTGAGG+AGG 0.594023 4_3:+70050953 Msa0659690:intron
TCATATACGCTGTTCTCAAG+TGG 0.595470 4_3:+70046093 Msa0659690:CDS
CTGAAGAGCGAGAACGAGAG+AGG 0.596739 4_3:-70044842 None:intergenic
GTCAGAAAGATGGGTTAATG+TGG 0.597798 4_3:+70046430 Msa0659690:CDS
ACTGTTGCGTCTAACACCCT+AGG 0.600078 4_3:+70051268 Msa0659690:three_prime_UTR
ACTTCAAGCCATACTTGCCA+TGG 0.604236 4_3:-70049595 None:intergenic
AATCTGACTACGAACGGAAG+AGG 0.604553 4_3:-70046705 None:intergenic
TCTGCACTGGATGGACAGGG+CGG 0.605556 4_3:+70048735 Msa0659690:CDS
GTTTCCTTGGAAGAAGGGGA+AGG 0.608328 4_3:+70044771 Msa0659690:five_prime_UTR
CACCAACGACAATGCCATGT+AGG 0.612205 4_3:-70046527 None:intergenic
TTGTATACGTAGTGTGTGTG+TGG 0.612544 4_3:+70051427 Msa0659690:three_prime_UTR
ATGTGTTGAACAGTCTTAAG+CGG 0.613628 4_3:+70046822 Msa0659690:CDS
CAAGTATGGCTTGAAGTGGA+CGG 0.614916 4_3:+70049601 Msa0659690:CDS
CAAACCGAGCAACGATGGAG+GGG 0.615893 4_3:-70046314 None:intergenic
CTTGCAGAAGAAGACTCTGA+AGG 0.617154 4_3:+70048825 Msa0659690:CDS
CTTTCTAATCTGACTACGAA+CGG 0.619916 4_3:-70046711 None:intergenic
CAAGCAAGAAGGCTAGCTCA+AGG 0.620516 4_3:+70050638 Msa0659690:CDS
TAATAATGTTGGATCAGCAA+CGG 0.620656 4_3:-70046795 None:intergenic
TTTGAATTGGATTAAAGCTG+CGG 0.622591 4_3:+70046130 Msa0659690:CDS
GCTAATGTCATGCAAAAGCA+TGG 0.623168 4_3:-70048763 None:intergenic
AAACAGAAACAACAAGTGGA+TGG 0.623509 4_3:-70046239 None:intergenic
TATTTGAACTGGGAAAGGAC+TGG 0.625634 4_3:-70050684 None:intergenic
CTTTGACACAAAGAGGAGAG+AGG 0.630517 4_3:-70046637 None:intergenic
GTATTGATGAAGACCAAAAG+TGG 0.630832 4_3:-70046971 None:intergenic
GAGTGCTTCTCAAGGTCCTG+AGG 0.635853 4_3:+70048527 Msa0659690:CDS
ATGGCAAGTATGGCTTGAAG+TGG 0.638346 4_3:+70049597 Msa0659690:CDS
TTTGTGGAGCATGGCACCTG+GGG 0.638912 4_3:+70049881 Msa0659690:CDS
CAACGATGGAGGGGAGTACG+TGG 0.640506 4_3:-70046305 None:intergenic
AAGCGGAACAAGTACAACGA+TGG 0.640980 4_3:+70046839 Msa0659690:CDS
AGGGGAATAATTGCAACAGG+TGG 0.642218 4_3:-70048663 None:intergenic
AAATCCATGATGAACTACCT+AGG 0.642755 4_3:+70048870 Msa0659690:CDS
TAGATGCAATGGAAGCATCA+GGG 0.643701 4_3:-70046028 None:intergenic
TTATTAGAAGCGGAATGCAA+GGG 0.645490 4_3:+70051027 Msa0659690:CDS
AGGAATTGGATGTGATGCAA+AGG 0.645990 4_3:+70048960 Msa0659690:intron
CATGCATGACAAGATGCTTG+AGG 0.647805 4_3:+70049849 Msa0659690:CDS
GTTTGTGGAGCATGGCACCT+GGG 0.648926 4_3:+70049880 Msa0659690:CDS
CTTGAGAACAGCGTATATGA+CGG 0.649367 4_3:-70046090 None:intergenic
ACGACAATGCCATGTAGGAG+AGG 0.650346 4_3:-70046522 None:intergenic
TTAGCTGCTTTGTGGAAGTG+TGG 0.650819 4_3:-70051229 None:intergenic
GTTGCAATATACACAGCCTA+GGG 0.651900 4_3:-70051284 None:intergenic
AAGAGACATTGAGATTCCCA+AGG 0.653403 4_3:+70049624 Msa0659690:CDS
TTTCCCAGTTCAAATAGATG+GGG 0.658576 4_3:+70050691 Msa0659690:CDS
AGTCAAACAGAAACAACAAG+TGG 0.662259 4_3:-70046243 None:intergenic
ATGGAGGGGAGTACGTGGTG+AGG 0.665215 4_3:-70046300 None:intergenic
TTCGTAGTCAGATTAGAAAG+CGG 0.668976 4_3:+70046714 Msa0659690:CDS
CATACTAATGGTAAGTCACG+AGG 0.672018 4_3:+70046767 Msa0659690:CDS
CCAAATCAAGAAATACACGT+TGG 0.672676 4_3:+70046925 Msa0659690:CDS
GAACCATTTATCCTACAACC+AGG 0.677637 4_3:+70050713 Msa0659690:CDS
TCATCAATACCAGAAGTGGT+GGG 0.679359 4_3:+70046984 Msa0659690:CDS
TTGCTGCATACGGAGAACAA+AGG 0.694647 4_3:-70046355 None:intergenic
ACCCACAAATGATCCGACAG+AGG 0.696039 4_3:-70046191 None:intergenic
AGGCTGTGTATATTGCAACC+CGG 0.700697 4_3:+70051288 Msa0659690:three_prime_UTR
TACATAGAGTTAACTCATCG+TGG 0.708322 4_3:+70050737 Msa0659690:CDS
AAATCATTTCCAGTGCCTAG+GGG 0.708420 4_3:-70048681 None:intergenic
AATATTGGGAGCTACATGGG+TGG 0.721837 4_3:+70049769 Msa0659690:CDS
AGCAAAGGACTGTAAATGTG+TGG 0.723555 4_3:+70046373 Msa0659690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAAAAGAAATTGTA+GGG - chr4_3:70045118-70045137 None:intergenic 10.0%
!! AATATAAAAAAAGAAATTGT+AGG - chr4_3:70045119-70045138 None:intergenic 10.0%
!! TGAAATTAAATATAAAGTAT+GGG - chr4_3:70045836-70045855 None:intergenic 10.0%
!!! AAAAAATATTTTATACTTGA+AGG - chr4_3:70047712-70047731 None:intergenic 10.0%
!! AACATTTATAAAAAAGTAAA+AGG + chr4_3:70047784-70047803 Msa0659690:intron 10.0%
!! TTTACATATAAATTTATAGA+AGG - chr4_3:70049693-70049712 None:intergenic 10.0%
!!! TTAAATTTTTTTTTTCATGA+AGG + chr4_3:70049723-70049742 Msa0659690:intron 10.0%
!!! GGAAACATATTATTTTATTT+TGG - chr4_3:70044757-70044776 None:intergenic 15.0%
!! AATAAAATAATATGTTTCCT+TGG + chr4_3:70044758-70044777 Msa0659690:five_prime_UTR 15.0%
!!! TTTTTTATTCAAAGTTTGTT+TGG + chr4_3:70045286-70045305 Msa0659690:intron 15.0%
!!! AAAATTAAGTGTTTTATGTT+TGG + chr4_3:70045342-70045361 Msa0659690:intron 15.0%
!! CTGAAATTAAATATAAAGTA+TGG - chr4_3:70045837-70045856 None:intergenic 15.0%
!!! GATTTGTTATAATATATTCA+AGG - chr4_3:70047271-70047290 None:intergenic 15.0%
!!! TGAAGTGTATTTTAAATAAT+TGG - chr4_3:70047602-70047621 None:intergenic 15.0%
!!! TATTTACATTACCATTTTTA+CGG + chr4_3:70049130-70049149 Msa0659690:intron 15.0%
!!! ATCTTTGTTGATTTATTTAT+AGG - chr4_3:70050263-70050282 None:intergenic 15.0%
!! TATCACATGATTTATGAATA+CGG + chr4_3:70045193-70045212 Msa0659690:intron 20.0%
!!! ATAATTGATTTTGACATGTT+TGG - chr4_3:70045497-70045516 None:intergenic 20.0%
!! AACACATATTCTAATAATGT+TGG - chr4_3:70046809-70046828 None:intergenic 20.0%
!! AGTAGAAAAAGAAAGAAAAA+AGG - chr4_3:70047367-70047386 None:intergenic 20.0%
!! AGATGTAATAATGTGAAATT+TGG + chr4_3:70047571-70047590 Msa0659690:intron 20.0%
!!! TGTTAATTTTCTCATCAATA+GGG + chr4_3:70048160-70048179 Msa0659690:intron 20.0%
!! CTCTTAAAGAATTATTTAGT+GGG - chr4_3:70048370-70048389 None:intergenic 20.0%
!!! AATAATTCTTTAAGAGCAAA+TGG + chr4_3:70048374-70048393 Msa0659690:intron 20.0%
!!! GAATAGATATTTTACAATGA+TGG - chr4_3:70049067-70049086 None:intergenic 20.0%
!! GTAAAAATAATTATCAGCAT+CGG - chr4_3:70049657-70049676 None:intergenic 20.0%
!! ACATATAAATTTATAGAAGG+CGG - chr4_3:70049690-70049709 None:intergenic 20.0%
!! GGTATTTAATATTTAATGAG+AGG + chr4_3:70050047-70050066 Msa0659690:intron 20.0%
!! TAAACTGTAACATCAAAAAA+AGG + chr4_3:70050132-70050151 Msa0659690:intron 20.0%
!! AAACTGTAACATCAAAAAAA+GGG + chr4_3:70050133-70050152 Msa0659690:intron 20.0%
!! TTTGAGCTTTCAAATTTAAT+CGG + chr4_3:70050371-70050390 Msa0659690:intron 20.0%
!! AAACAGATAAAAGACATTTA+CGG + chr4_3:70050566-70050585 Msa0659690:intron 20.0%
!! TTTCCAAAAAATATAGAGAA+AGG + chr4_3:70051199-70051218 Msa0659690:three_prime_UTR 20.0%
!!! ATACCTTTCTCTATATTTTT+TGG - chr4_3:70051205-70051224 None:intergenic 20.0%
!! AAAGAAAAAAAAAAATACGC+CGG - chr4_3:70051310-70051329 None:intergenic 20.0%
!! TCAAAATGGAGAAGAATTTT+TGG - chr4_3:70044933-70044952 None:intergenic 25.0%
!!! AATTGATTTTACCTCCAAAA+TGG - chr4_3:70045460-70045479 None:intergenic 25.0%
! AGAAAATCAATTCTGATTGA+GGG + chr4_3:70045663-70045682 Msa0659690:intron 25.0%
! CCATAAATTATGTGTATGTT+TGG - chr4_3:70045713-70045732 None:intergenic 25.0%
! CCAAACATACACATAATTTA+TGG + chr4_3:70045710-70045729 Msa0659690:intron 25.0%
!!! ATTTCAGTTATTTTGTCAGT+TGG + chr4_3:70045850-70045869 Msa0659690:intron 25.0%
!! ATTTGGGAATTGTAATTTTG+AGG + chr4_3:70045994-70046013 Msa0659690:CDS 25.0%
!! AAAATTTAAAGTTCCTCTGT+CGG + chr4_3:70046178-70046197 Msa0659690:CDS 25.0%
!!! AGAAGTTGATGAAAATCAAA+AGG + chr4_3:70046658-70046677 Msa0659690:CDS 25.0%
!!! GAAGTTGATGAAAATCAAAA+GGG + chr4_3:70046659-70046678 Msa0659690:CDS 25.0%
!! AAATTTTGTGATCTTAGATC+AGG + chr4_3:70047206-70047225 Msa0659690:intron 25.0%
!! TCTTAAGATATAGTCTGTTT+TGG + chr4_3:70047295-70047314 Msa0659690:intron 25.0%
! TATTTCCAAAACTTTGGTAA+TGG - chr4_3:70047550-70047569 None:intergenic 25.0%
! CATCTATATTTCCAAAACTT+TGG - chr4_3:70047556-70047575 None:intergenic 25.0%
! TGTAATAATGTGAAATTTGG+TGG + chr4_3:70047574-70047593 Msa0659690:intron 25.0%
! TTTATGCAATCAGGAATTAT+AGG - chr4_3:70047911-70047930 None:intergenic 25.0%
! ATCTTCTTAAAAACTGTTGA+CGG + chr4_3:70048013-70048032 Msa0659690:intron 25.0%
!!! TCAAGACTGTGTTTTATTAT+TGG + chr4_3:70048133-70048152 Msa0659690:intron 25.0%
!! CTGTTAATTTTCTCATCAAT+AGG + chr4_3:70048159-70048178 Msa0659690:intron 25.0%
!! ATAGGGTTTCTTTAGAAAAA+AGG + chr4_3:70048177-70048196 Msa0659690:intron 25.0%
! CATATCATACAGTATCATAA+GGG - chr4_3:70048220-70048239 None:intergenic 25.0%
! TCATATCATACAGTATCATA+AGG - chr4_3:70048221-70048240 None:intergenic 25.0%
! GCTCTTAAAGAATTATTTAG+TGG - chr4_3:70048371-70048390 None:intergenic 25.0%
!!! TGTACCATATTTTAGAGTAT+TGG + chr4_3:70048572-70048591 Msa0659690:CDS 25.0%
!!! CAAACCAATACTCTAAAATA+TGG - chr4_3:70048579-70048598 None:intergenic 25.0%
!!! TATTTTAGAGTATTGGTTTG+TGG + chr4_3:70048579-70048598 Msa0659690:CDS 25.0%
!!! GATTTAGTTTTCACTTTATG+TGG - chr4_3:70048855-70048874 None:intergenic 25.0%
!! TTTACAATGATGGAACATTA+AGG - chr4_3:70049057-70049076 None:intergenic 25.0%
!! AATTCTCATAAGTCTTATCT+AGG + chr4_3:70049428-70049447 Msa0659690:intron 25.0%
! TTGGGTATATTTATATCTGA+TGG + chr4_3:70049488-70049507 Msa0659690:intron 25.0%
! AAATTACGATATGCAAAAGA+AGG + chr4_3:70049535-70049554 Msa0659690:CDS 25.0%
! GCTTAATTGTGCTTAATATT+GGG + chr4_3:70049755-70049774 Msa0659690:CDS 25.0%
! AACTGTAACATCAAAAAAAG+GGG + chr4_3:70050134-70050153 Msa0659690:intron 25.0%
!! TTTTGAATGACAAATGTTAG+TGG + chr4_3:70050188-70050207 Msa0659690:intron 25.0%
! GTATTGAACTTTCATACTTA+CGG - chr4_3:70050425-70050444 None:intergenic 25.0%
! AAAAAATTGACAAAGACACT+TGG - chr4_3:70050459-70050478 None:intergenic 25.0%
! ATAATTATTTCAACAGACAG+AGG - chr4_3:70050490-70050509 None:intergenic 25.0%
!! TTTTCAAACGTAAATCTAAC+AGG + chr4_3:70050863-70050882 Msa0659690:intron 25.0%
!!! TTTTTGGAAATGACCAAAAA+TGG - chr4_3:70051189-70051208 None:intergenic 25.0%
! AAGAAAAAAAAAAATACGCC+GGG - chr4_3:70051309-70051328 None:intergenic 25.0%
! TACTGATATGTATATGTTCA+TGG + chr4_3:70051393-70051412 Msa0659690:three_prime_UTR 25.0%
! ACTGATATGTATATGTTCAT+GGG + chr4_3:70051394-70051413 Msa0659690:three_prime_UTR 25.0%
TAATATGTTTCCTTGGAAGA+AGG + chr4_3:70044765-70044784 Msa0659690:five_prime_UTR 30.0%
AATATGTTTCCTTGGAAGAA+GGG + chr4_3:70044766-70044785 Msa0659690:five_prime_UTR 30.0%
CGATTTGAATGAGATCAAAA+TGG - chr4_3:70044947-70044966 None:intergenic 30.0%
AAAGATGAGAGACATTGTAT+TGG - chr4_3:70044993-70045012 None:intergenic 30.0%
GTTGCAGCTATATTCAAAAA+TGG - chr4_3:70045051-70045070 None:intergenic 30.0%
AAAAAAGAAATTGTAGGGCA+CGG - chr4_3:70045113-70045132 None:intergenic 30.0%
! TTGGTTATGTGAATTGATTC+TGG + chr4_3:70045305-70045324 Msa0659690:intron 30.0%
! ATGTTTGGTTACACTTTTAG+AGG - chr4_3:70045544-70045563 None:intergenic 30.0%
ACGTGAATGTAGTATATGTT+TGG - chr4_3:70045559-70045578 None:intergenic 30.0%
! ACTGATTCTAACTTTAAGCT+AGG - chr4_3:70045636-70045655 None:intergenic 30.0%
GAGAAAATCAATTCTGATTG+AGG + chr4_3:70045662-70045681 Msa0659690:intron 30.0%
!! GGTTTGAATTTTGACAAGTT+TGG - chr4_3:70045692-70045711 None:intergenic 30.0%
GGGTAGGAAAAAAAATTGAA+GGG - chr4_3:70045787-70045806 None:intergenic 30.0%
AGGGTAGGAAAAAAAATTGA+AGG - chr4_3:70045788-70045807 None:intergenic 30.0%
GTTATCTGTAACAATGATTG+AGG + chr4_3:70045902-70045921 Msa0659690:intron 30.0%
AGGTTTCTTATTGAATGATC+AGG + chr4_3:70045922-70045941 Msa0659690:intron 30.0%
!! AATGATCAGGTTGTACATTT+TGG + chr4_3:70045935-70045954 Msa0659690:intron 30.0%
!! AGTTTTGTCATGTTCGATTT+GGG + chr4_3:70045978-70045997 Msa0659690:CDS 30.0%
TTTGAATTGGATTAAAGCTG+CGG + chr4_3:70046130-70046149 Msa0659690:CDS 30.0%
!! TGGGTTGAAGATTTTACTTA+TGG + chr4_3:70046209-70046228 Msa0659690:CDS 30.0%
! GGGTTGAAGATTTTACTTAT+GGG + chr4_3:70046210-70046229 Msa0659690:CDS 30.0%
! GGTTGAAGATTTTACTTATG+GGG + chr4_3:70046211-70046230 Msa0659690:CDS 30.0%
!! TAAATTTTGAGAAGGCCATA+GGG - chr4_3:70046270-70046289 None:intergenic 30.0%
TTAGTCATATTAGACACCAT+TGG + chr4_3:70046408-70046427 Msa0659690:CDS 30.0%
TATGACATTTCACATGAATG+AGG - chr4_3:70046559-70046578 None:intergenic 30.0%
AACAATTTGACTAGAGATTC+TGG + chr4_3:70046578-70046597 Msa0659690:CDS 30.0%
! TTCTGGTGATTTTTGTGATT+TGG + chr4_3:70046595-70046614 Msa0659690:CDS 30.0%
! TCTGGTGATTTTTGTGATTT+GGG + chr4_3:70046596-70046615 Msa0659690:CDS 30.0%
CGTAACCATAATAAAAATGG+AGG + chr4_3:70046737-70046756 Msa0659690:CDS 30.0%
AACCATAATAAAAATGGAGG+TGG + chr4_3:70046740-70046759 Msa0659690:CDS 30.0%
!! AACCACCTCCATTTTTATTA+TGG - chr4_3:70046745-70046764 None:intergenic 30.0%
TAATAATGTTGGATCAGCAA+CGG - chr4_3:70046798-70046817 None:intergenic 30.0%
!! TGTATTTCTTGATTTGGCTA+GGG - chr4_3:70046922-70046941 None:intergenic 30.0%
!! AGATGTTTTAAGTGTGAGAT+TGG + chr4_3:70047148-70047167 Msa0659690:intron 30.0%
GATCTTGACTCATAATGTTA+AGG - chr4_3:70047498-70047517 None:intergenic 30.0%
! TAAATGGAAAGGGTATGAAA+TGG - chr4_3:70047525-70047544 None:intergenic 30.0%
!! AACTTTGGTAATGGACTAAA+TGG - chr4_3:70047541-70047560 None:intergenic 30.0%
! TTAGTCCATTACCAAAGTTT+TGG + chr4_3:70047542-70047561 Msa0659690:intron 30.0%
ACTCTTCAAAACTACAGTAA+TGG + chr4_3:70047624-70047643 Msa0659690:intron 30.0%
GACTCTAACATTATGTGATT+TGG + chr4_3:70047670-70047689 Msa0659690:intron 30.0%
! ATGTTTACAAGTGAGTGTTT+TGG + chr4_3:70047971-70047990 Msa0659690:intron 30.0%
AACAAAAAGGAGCTAAAACA+AGG + chr4_3:70048045-70048064 Msa0659690:intron 30.0%
TCATTTCATATCAGTCTCAA+TGG + chr4_3:70048464-70048483 Msa0659690:intron 30.0%
AGTTACTATGTTAGATCGTT+GGG + chr4_3:70048794-70048813 Msa0659690:CDS 30.0%
!! TAACACCAACCTACTTTTAT+AGG + chr4_3:70048940-70048959 Msa0659690:intron 30.0%
CAATTCCTATAAAAGTAGGT+TGG - chr4_3:70048948-70048967 None:intergenic 30.0%
!! CAACCTACTTTTATAGGAAT+TGG + chr4_3:70048946-70048965 Msa0659690:intron 30.0%
CATCCAATTCCTATAAAAGT+AGG - chr4_3:70048952-70048971 None:intergenic 30.0%
TTATCCTAAATTTCCCTCAT+TGG + chr4_3:70049205-70049224 Msa0659690:intron 30.0%
CTGTTTATCATACCTCTAAA+TGG + chr4_3:70049280-70049299 Msa0659690:intron 30.0%
TCAATAAAAAGGGGTAAAAG+AGG - chr4_3:70049389-70049408 None:intergenic 30.0%
CAGAAGTCTTCAATAAAAAG+GGG - chr4_3:70049398-70049417 None:intergenic 30.0%
CCAGAAGTCTTCAATAAAAA+GGG - chr4_3:70049399-70049418 None:intergenic 30.0%
ACCAGAAGTCTTCAATAAAA+AGG - chr4_3:70049400-70049419 None:intergenic 30.0%
!! CTTGAAAAGCTTTCACTTTT+GGG + chr4_3:70049470-70049489 Msa0659690:intron 30.0%
! TTTTTCATGAAGGATTCAGA+AGG + chr4_3:70049733-70049752 Msa0659690:intron 30.0%
GGCTTAATTGTGCTTAATAT+TGG + chr4_3:70049754-70049773 Msa0659690:CDS 30.0%
TCAAGTCTTCATAACAATAC+TGG + chr4_3:70049962-70049981 Msa0659690:intron 30.0%
TACATTTAGCTGAATTCTTG+AGG + chr4_3:70050026-70050045 Msa0659690:intron 30.0%
TGTTACAGTTTAGATCAGTT+TGG - chr4_3:70050124-70050143 None:intergenic 30.0%
TTGATTTATTTATAGGCCCT+AGG - chr4_3:70050256-70050275 None:intergenic 30.0%
GAAAGCTCAAATATACTGTA+TGG - chr4_3:70050362-70050381 None:intergenic 30.0%
TCACAAGAGGTTAATGTATT+TGG + chr4_3:70050530-70050549 Msa0659690:intron 30.0%
CACAAGAGGTTAATGTATTT+GGG + chr4_3:70050531-70050550 Msa0659690:intron 30.0%
ACTGAAGAGGTAGAAAAATA+TGG - chr4_3:70050808-70050827 None:intergenic 30.0%
!! GACAGAAGTATTATTAGAAG+CGG + chr4_3:70051017-70051036 Msa0659690:CDS 30.0%
TAAAATAGTTGCCCAACTTT+GGG + chr4_3:70051134-70051153 Msa0659690:three_prime_UTR 30.0%
CAAAAATGGTCCTATAAAAG+GGG - chr4_3:70051175-70051194 None:intergenic 30.0%
CCAAAAATGGTCCTATAAAA+GGG - chr4_3:70051176-70051195 None:intergenic 30.0%
ACCAAAAATGGTCCTATAAA+AGG - chr4_3:70051177-70051196 None:intergenic 30.0%
! TTTTCCCTCTAATCTCATTT+GGG - chr4_3:70051368-70051387 None:intergenic 30.0%
! TTTTTCCCTCTAATCTCATT+TGG - chr4_3:70051369-70051388 None:intergenic 30.0%
ATATGTTTCCTTGGAAGAAG+GGG + chr4_3:70044767-70044786 Msa0659690:five_prime_UTR 35.0%
TCATTCAAATCGATCGTGTT+AGG + chr4_3:70044955-70044974 Msa0659690:five_prime_UTR 35.0%
! GAGAGACATTGTATTGGTAT+TGG - chr4_3:70044987-70045006 None:intergenic 35.0%
GTTACAGATTCAACCTATGA+TGG - chr4_3:70045029-70045048 None:intergenic 35.0%
AGTACTGTTGCAGAATAGAA+GGG - chr4_3:70045088-70045107 None:intergenic 35.0%
! AAGTACTGTTGCAGAATAGA+AGG - chr4_3:70045089-70045108 None:intergenic 35.0%
CAATGTGCAAAAACCAAGTT+TGG + chr4_3:70045593-70045612 Msa0659690:intron 35.0%
ATTCCAGAATGGGATTTACA+AGG - chr4_3:70045748-70045767 None:intergenic 35.0%
ACAGTTGGTTATTCCAGAAT+GGG - chr4_3:70045758-70045777 None:intergenic 35.0%
ATTGAAGGGAATATGACAGT+TGG - chr4_3:70045773-70045792 None:intergenic 35.0%
AATGGACACTAGTAGTAGTA+GGG - chr4_3:70045807-70045826 None:intergenic 35.0%
AAATGGACACTAGTAGTAGT+AGG - chr4_3:70045808-70045827 None:intergenic 35.0%
ATAAAGTATGGGCAGCAAAA+TGG - chr4_3:70045825-70045844 None:intergenic 35.0%
!! GAGTTTTGTCATGTTCGATT+TGG + chr4_3:70045977-70045996 Msa0659690:CDS 35.0%
! GCTTCCATTGCATCTATTTT+TGG + chr4_3:70046035-70046054 Msa0659690:CDS 35.0%
CCATCCAAAAATAGATGCAA+TGG - chr4_3:70046042-70046061 None:intergenic 35.0%
!!! CCATTGCATCTATTTTTGGA+TGG + chr4_3:70046039-70046058 Msa0659690:CDS 35.0%
AAACAGAAACAACAAGTGGA+TGG - chr4_3:70046242-70046261 None:intergenic 35.0%
AGTCAAACAGAAACAACAAG+TGG - chr4_3:70046246-70046265 None:intergenic 35.0%
!! CTAAATTTTGAGAAGGCCAT+AGG - chr4_3:70046271-70046290 None:intergenic 35.0%
CTATGGCCTTCTCAAAATTT+AGG + chr4_3:70046269-70046288 Msa0659690:CDS 35.0%
!! GTTGCACCTAAATTTTGAGA+AGG - chr4_3:70046278-70046297 None:intergenic 35.0%
TTCGTCACAGTAAAAACAGA+AGG - chr4_3:70046477-70046496 None:intergenic 35.0%
! TAGGAGAGGATTTTACAAAC+GGG - chr4_3:70046511-70046530 None:intergenic 35.0%
! GTAGGAGAGGATTTTACAAA+CGG - chr4_3:70046512-70046531 None:intergenic 35.0%
TTGTAAAATCCTCTCCTACA+TGG + chr4_3:70046513-70046532 Msa0659690:CDS 35.0%
! TTTGTGATTTGGGTTCTTTG+AGG + chr4_3:70046606-70046625 Msa0659690:CDS 35.0%
TCAACTTCTTTGACACAAAG+AGG - chr4_3:70046647-70046666 None:intergenic 35.0%
! GTTGATGAAAATCAAAAGGG+TGG + chr4_3:70046662-70046681 Msa0659690:CDS 35.0%
CTTTCTAATCTGACTACGAA+CGG - chr4_3:70046714-70046733 None:intergenic 35.0%
TTCGTAGTCAGATTAGAAAG+CGG + chr4_3:70046714-70046733 Msa0659690:CDS 35.0%
CGGCGTAACCATAATAAAAA+TGG + chr4_3:70046734-70046753 Msa0659690:CDS 35.0%
ATGTGTTGAACAGTCTTAAG+CGG + chr4_3:70046822-70046841 Msa0659690:CDS 35.0%
!!! ATGCTCTACCATTTTTTGTG+GGG - chr4_3:70046877-70046896 None:intergenic 35.0%
!!! GATGCTCTACCATTTTTTGT+GGG - chr4_3:70046878-70046897 None:intergenic 35.0%
!!! TGATGCTCTACCATTTTTTG+TGG - chr4_3:70046879-70046898 None:intergenic 35.0%
! ACAAAAAATGGTAGAGCATC+AGG + chr4_3:70046878-70046897 Msa0659690:CDS 35.0%
! CAAAAAATGGTAGAGCATCA+GGG + chr4_3:70046879-70046898 Msa0659690:CDS 35.0%
!! GTATTTCTTGATTTGGCTAG+GGG - chr4_3:70046921-70046940 None:intergenic 35.0%
!! GTGTATTTCTTGATTTGGCT+AGG - chr4_3:70046923-70046942 None:intergenic 35.0%
CCAACGTGTATTTCTTGATT+TGG - chr4_3:70046928-70046947 None:intergenic 35.0%
CCAAATCAAGAAATACACGT+TGG + chr4_3:70046925-70046944 Msa0659690:CDS 35.0%
!! TTGATTTGCCAAAAGATGCT+AGG + chr4_3:70046948-70046967 Msa0659690:CDS 35.0%
! GTATTGATGAAGACCAAAAG+TGG - chr4_3:70046974-70046993 None:intergenic 35.0%
TTCAATCTTCTGTGAAGAGA+AGG - chr4_3:70047019-70047038 None:intergenic 35.0%
TATGCTACTAAATCCTGTTC+AGG + chr4_3:70047039-70047058 Msa0659690:CDS 35.0%
AATCAAGTAATCACCTGAAC+AGG - chr4_3:70047055-70047074 None:intergenic 35.0%
CATGCATTCTATTGAAGTAG+TGG + chr4_3:70047087-70047106 Msa0659690:intron 35.0%
! GAGATTGGTTCCTATGATTT+AGG + chr4_3:70047163-70047182 Msa0659690:intron 35.0%
CAAGCAAACTCCTAAATCAT+AGG - chr4_3:70047176-70047195 None:intergenic 35.0%
ACGAAGGATAGATTAAAGGT+TGG - chr4_3:70047244-70047263 None:intergenic 35.0%
CAGTACGAAGGATAGATTAA+AGG - chr4_3:70047248-70047267 None:intergenic 35.0%
ATATATTCAAGGCAGTACGA+AGG - chr4_3:70047260-70047279 None:intergenic 35.0%
!! AGATATAGTCTGTTTTGGAC+AGG + chr4_3:70047300-70047319 Msa0659690:intron 35.0%
TCATAATGTTAAGGCCAACA+GGG - chr4_3:70047489-70047508 None:intergenic 35.0%
!! GGTAATGGACTAAATGGAAA+GGG - chr4_3:70047535-70047554 None:intergenic 35.0%
!! TGGTAATGGACTAAATGGAA+AGG - chr4_3:70047536-70047555 None:intergenic 35.0%
! TCAAAACTACAGTAATGGAG+AGG + chr4_3:70047629-70047648 Msa0659690:intron 35.0%
! CATTATGTGATTTGGATGAC+TGG + chr4_3:70047678-70047697 Msa0659690:intron 35.0%
! TTCCTGTTCTTTTCTTTGAG+AGG + chr4_3:70047757-70047776 Msa0659690:intron 35.0%
!! TCCTGTTCTTTTCTTTGAGA+GGG + chr4_3:70047758-70047777 Msa0659690:intron 35.0%
TCCTGATTGCATAAACTTGT+TGG + chr4_3:70047916-70047935 Msa0659690:intron 35.0%
! CCTGATTGCATAAACTTGTT+GGG + chr4_3:70047917-70047936 Msa0659690:intron 35.0%
ACGGTGAAAAGTCAACAAAA+AGG + chr4_3:70048032-70048051 Msa0659690:intron 35.0%
!! GAGCAAATGGTTGATGAAAA+TGG + chr4_3:70048387-70048406 Msa0659690:intron 35.0%
TTTGTATTGAGTGCTTCTCA+AGG + chr4_3:70048519-70048538 Msa0659690:CDS 35.0%
!! TTTAGAGTATTGGTTTGTGG+CGG + chr4_3:70048582-70048601 Msa0659690:CDS 35.0%
! TGTGTTTTTCTATAGCATCG+AGG - chr4_3:70048629-70048648 None:intergenic 35.0%
ATTTGTCCAGGGTTATGAAT+TGG + chr4_3:70048700-70048719 Msa0659690:CDS 35.0%
TTTGTCCAGGGTTATGAATT+GGG + chr4_3:70048701-70048720 Msa0659690:CDS 35.0%
CAGTTACTATGTTAGATCGT+TGG + chr4_3:70048793-70048812 Msa0659690:CDS 35.0%
AAATCCATGATGAACTACCT+AGG + chr4_3:70048870-70048889 Msa0659690:CDS 35.0%
! TTTGTTTCAGTGAAGTACCT+AGG - chr4_3:70048890-70048909 None:intergenic 35.0%
! CAATGATGGAACATTAAGGA+GGG - chr4_3:70049053-70049072 None:intergenic 35.0%
! ACAATGATGGAACATTAAGG+AGG - chr4_3:70049054-70049073 None:intergenic 35.0%
AGAAAACAAGAGAATTGACG+TGG - chr4_3:70049098-70049117 None:intergenic 35.0%
!! TACATTACCATTTTTACGGC+TGG + chr4_3:70049134-70049153 Msa0659690:intron 35.0%
!! ACATTACCATTTTTACGGCT+GGG + chr4_3:70049135-70049154 Msa0659690:intron 35.0%
! TTAGGATAAGTCTGAGCTTT+TGG - chr4_3:70049194-70049213 None:intergenic 35.0%
AATGCCAATGAGGGAAATTT+AGG - chr4_3:70049212-70049231 None:intergenic 35.0%
AAATTTCCCTCATTGGCATT+AGG + chr4_3:70049212-70049231 Msa0659690:intron 35.0%
AATTTCCCTCATTGGCATTA+GGG + chr4_3:70049213-70049232 Msa0659690:intron 35.0%
GGTATGATAAACAGCATAAG+AGG - chr4_3:70049274-70049293 None:intergenic 35.0%
! CCCTTTTTATTGAAGACTTC+TGG + chr4_3:70049396-70049415 Msa0659690:intron 35.0%
! GCTTGAAAAGCTTTCACTTT+TGG + chr4_3:70049469-70049488 Msa0659690:intron 35.0%
CTTAATATTGGGAGCTACAT+GGG + chr4_3:70049766-70049785 Msa0659690:CDS 35.0%
!! TTAATTTGTCCTCCTTTGTC+CGG + chr4_3:70050223-70050242 Msa0659690:intron 35.0%
GTTGTTAAAGCTATCACAAG+AGG + chr4_3:70050517-70050536 Msa0659690:intron 35.0%
!! TAATGTTTGATTTGCCCTGT+AGG + chr4_3:70050604-70050623 Msa0659690:intron 35.0%
CTTTCCCAGTTCAAATAGAT+GGG + chr4_3:70050690-70050709 Msa0659690:CDS 35.0%
TTTCCCAGTTCAAATAGATG+GGG + chr4_3:70050691-70050710 Msa0659690:CDS 35.0%
TACATAGAGTTAACTCATCG+TGG + chr4_3:70050737-70050756 Msa0659690:CDS 35.0%
TACCTCTTCAGTTATGTGTA+CGG + chr4_3:70050816-70050835 Msa0659690:intron 35.0%
AAAGCTCCTAAGATTCCTAA+CGG - chr4_3:70050846-70050865 None:intergenic 35.0%
GCAAATTTCGCTCTTATATG+TGG + chr4_3:70050899-70050918 Msa0659690:intron 35.0%
ACCTGAGTATAGCAAATAAG+AGG - chr4_3:70050940-70050959 None:intergenic 35.0%
ATACTCAGGTATTCATGTTG+AGG + chr4_3:70050950-70050969 Msa0659690:intron 35.0%
ATTATTAGAAGCGGAATGCA+AGG + chr4_3:70051026-70051045 Msa0659690:CDS 35.0%
TTATTAGAAGCGGAATGCAA+GGG + chr4_3:70051027-70051046 Msa0659690:CDS 35.0%
TCAGAGAAAAGTTCTTCTCA+AGG + chr4_3:70051065-70051084 Msa0659690:CDS 35.0%
CGGATCTTAAGAAAGATTGA+TGG - chr4_3:70051097-70051116 None:intergenic 35.0%
!! AGTTGGGCAACTATTTTAGA+AGG - chr4_3:70051132-70051151 None:intergenic 35.0%
CTAAAATAGTTGCCCAACTT+TGG + chr4_3:70051133-70051152 Msa0659690:three_prime_UTR 35.0%
! CCCTTTTATAGGACCATTTT+TGG + chr4_3:70051173-70051192 Msa0659690:three_prime_UTR 35.0%
! ATCTTACATTAGCTGCTTTG+TGG - chr4_3:70051240-70051259 None:intergenic 35.0%
AACACCCAAATGAGATTAGA+GGG + chr4_3:70051361-70051380 Msa0659690:three_prime_UTR 35.0%
ATGTATATGTTCATGGGTCT+TGG + chr4_3:70051400-70051419 Msa0659690:three_prime_UTR 35.0%
AAGTTAACAAACAGCTTCCA+AGG + chr4_3:70051462-70051481 Msa0659690:three_prime_UTR 35.0%
! ACGAGAGAGGAATTTTGGAT+TGG - chr4_3:70044832-70044851 None:intergenic 40.0%
CTCTAGATTCCATCCATCAT+AGG + chr4_3:70045013-70045032 Msa0659690:intron 40.0%
! CAGATTCAACCTATGATGGA+TGG - chr4_3:70045025-70045044 None:intergenic 40.0%
! TACAGTTCCTAGCTTGTAGT+AGG + chr4_3:70045432-70045451 Msa0659690:intron 40.0%
AATGGATCCTACTACAAGCT+AGG - chr4_3:70045442-70045461 None:intergenic 40.0%
! GCTTGTAGTAGGATCCATTT+TGG + chr4_3:70045443-70045462 Msa0659690:intron 40.0%
! TGTAGTAGGATCCATTTTGG+AGG + chr4_3:70045446-70045465 Msa0659690:intron 40.0%
!! GTAGCTTTTGACTCCAAACT+TGG - chr4_3:70045609-70045628 None:intergenic 40.0%
GACAGTTGGTTATTCCAGAA+TGG - chr4_3:70045759-70045778 None:intergenic 40.0%
!! TAGATGCAATGGAAGCATCA+GGG - chr4_3:70046031-70046050 None:intergenic 40.0%
!! ATAGATGCAATGGAAGCATC+AGG - chr4_3:70046032-70046051 None:intergenic 40.0%
!! ATTTTTGGATGGCTGATCAC+TGG + chr4_3:70046050-70046069 Msa0659690:CDS 40.0%
CTTGAGAACAGCGTATATGA+CGG - chr4_3:70046093-70046112 None:intergenic 40.0%
TCATATACGCTGTTCTCAAG+TGG + chr4_3:70046093-70046112 Msa0659690:CDS 40.0%
! CCAAACTTTCTTCTTTTCCC+TGG - chr4_3:70046156-70046175 None:intergenic 40.0%
CCAGGGAAAAGAAGAAAGTT+TGG + chr4_3:70046153-70046172 Msa0659690:CDS 40.0%
! GTTTCTGTTTGACTTCCCTA+TGG + chr4_3:70046252-70046271 Msa0659690:CDS 40.0%
TTACAGTCCTTTGCTGCATA+CGG - chr4_3:70046368-70046387 None:intergenic 40.0%
AGCAAAGGACTGTAAATGTG+TGG + chr4_3:70046373-70046392 Msa0659690:CDS 40.0%
ACACCATTGGTCAGAAAGAT+GGG + chr4_3:70046421-70046440 Msa0659690:CDS 40.0%
TAACCCATCTTTCTGACCAA+TGG - chr4_3:70046427-70046446 None:intergenic 40.0%
!! GTCAGAAAGATGGGTTAATG+TGG + chr4_3:70046430-70046449 Msa0659690:CDS 40.0%
CAAAGAGGAGAGAGGATAAT+TGG - chr4_3:70046632-70046651 None:intergenic 40.0%
CATACTAATGGTAAGTCACG+AGG + chr4_3:70046767-70046786 Msa0659690:CDS 40.0%
CTCTTTGACCCCACAAAAAA+TGG + chr4_3:70046866-70046885 Msa0659690:CDS 40.0%
! AAAAGTGGCCTAGCATCTTT+TGG - chr4_3:70046959-70046978 None:intergenic 40.0%
!! AAAAGATGCTAGGCCACTTT+TGG + chr4_3:70046958-70046977 Msa0659690:CDS 40.0%
GTCTTCATCAATACCAGAAG+TGG + chr4_3:70046980-70046999 Msa0659690:CDS 40.0%
TTCATCAATACCAGAAGTGG+TGG + chr4_3:70046983-70047002 Msa0659690:CDS 40.0%
TCATCAATACCAGAAGTGGT+GGG + chr4_3:70046984-70047003 Msa0659690:CDS 40.0%
CTCATAATGTTAAGGCCAAC+AGG - chr4_3:70047490-70047509 None:intergenic 40.0%
TCCCTCTCAAAGAAAAGAAC+AGG - chr4_3:70047762-70047781 None:intergenic 40.0%
CCCAACAAGTTTATGCAATC+AGG - chr4_3:70047920-70047939 None:intergenic 40.0%
CGGCTACATGGATCAAATTA+CGG + chr4_3:70048309-70048328 Msa0659690:intron 40.0%
! TCAATGGACATGTTCTGGTT+TGG + chr4_3:70048480-70048499 Msa0659690:intron 40.0%
!!! CTGGTTTGGCATTTTACTGT+AGG + chr4_3:70048494-70048513 Msa0659690:intron 40.0%
!! TTAGAGTATTGGTTTGTGGC+GGG + chr4_3:70048583-70048602 Msa0659690:CDS 40.0%
TTGTCCAGGGTTATGAATTG+GGG + chr4_3:70048702-70048721 Msa0659690:CDS 40.0%
GCTAATGTCATGCAAAAGCA+TGG - chr4_3:70048766-70048785 None:intergenic 40.0%
AGTACCTAGGTAGTTCATCA+TGG - chr4_3:70048877-70048896 None:intergenic 40.0%
AGGAATTGGATGTGATGCAA+AGG + chr4_3:70048960-70048979 Msa0659690:intron 40.0%
TCCTGAAAAGTTTAGTAGCC+AGG + chr4_3:70049017-70049036 Msa0659690:CDS 40.0%
! ACCTGGCTACTAAACTTTTC+AGG - chr4_3:70049021-70049040 None:intergenic 40.0%
ATATTGCCCAGCCGTAAAAA+TGG - chr4_3:70049144-70049163 None:intergenic 40.0%
CATACCTCTAAATGGAAACC+AGG + chr4_3:70049288-70049307 Msa0659690:intron 40.0%
ATCATCACTATGATCTCTCC+TGG - chr4_3:70049309-70049328 None:intergenic 40.0%
! GAGATCATAGTGATGATGAG+TGG + chr4_3:70049312-70049331 Msa0659690:intron 40.0%
! TCATAGTGATGATGAGTGGA+TGG + chr4_3:70049316-70049335 Msa0659690:intron 40.0%
AGAAGGAGCAAGAGACATTA+TGG + chr4_3:70049552-70049571 Msa0659690:CDS 40.0%
AAGAGACATTGAGATTCCCA+AGG + chr4_3:70049624-70049643 Msa0659690:CDS 40.0%
!! CAGCATCGGTAATTAACCTT+GGG - chr4_3:70049643-70049662 None:intergenic 40.0%
!! TCAGCATCGGTAATTAACCT+TGG - chr4_3:70049644-70049663 None:intergenic 40.0%
GCTTAATATTGGGAGCTACA+TGG + chr4_3:70049765-70049784 Msa0659690:CDS 40.0%
CTTGAGGTAGTATGTGTTTG+TGG + chr4_3:70049865-70049884 Msa0659690:CDS 40.0%
TAGTATGTGTTTGTGGAGCA+TGG + chr4_3:70049872-70049891 Msa0659690:CDS 40.0%
! TAATTTGTCCTCCTTTGTCC+GGG + chr4_3:70050224-70050243 Msa0659690:intron 40.0%
TTGTGAAAGTCCAACCTACA+GGG - chr4_3:70050621-70050640 None:intergenic 40.0%
TTGGACTTTCACAAGCAAGA+AGG + chr4_3:70050627-70050646 Msa0659690:CDS 40.0%
TATTTGAACTGGGAAAGGAC+TGG - chr4_3:70050687-70050706 None:intergenic 40.0%
CCATCTATTTGAACTGGGAA+AGG - chr4_3:70050692-70050711 None:intergenic 40.0%
CCTTTCCCAGTTCAAATAGA+TGG + chr4_3:70050689-70050708 Msa0659690:CDS 40.0%
GTTCCCCATCTATTTGAACT+GGG - chr4_3:70050697-70050716 None:intergenic 40.0%
GAACCATTTATCCTACAACC+AGG + chr4_3:70050713-70050732 Msa0659690:CDS 40.0%
TAGCCTGGTTGTAGGATAAA+TGG - chr4_3:70050719-70050738 None:intergenic 40.0%
TGAGTTAACTCTATGTAGCC+TGG - chr4_3:70050734-70050753 None:intergenic 40.0%
ATCCGTACACATAACTGAAG+AGG - chr4_3:70050821-70050840 None:intergenic 40.0%
AAGCTCCTAAGATTCCTAAC+GGG - chr4_3:70050845-70050864 None:intergenic 40.0%
!! GCCTCTTATTTGCTATACTC+AGG + chr4_3:70050936-70050955 Msa0659690:intron 40.0%
ACTTCAGAAGATGAGCCTAA+AGG + chr4_3:70050976-70050995 Msa0659690:CDS 40.0%
GTTGCAATATACACAGCCTA+GGG - chr4_3:70051287-70051306 None:intergenic 40.0%
CTCTAATCTCATTTGGGTGT+TGG - chr4_3:70051362-70051381 None:intergenic 40.0%
CAACACCCAAATGAGATTAG+AGG + chr4_3:70051360-70051379 Msa0659690:three_prime_UTR 40.0%
TTGTATACGTAGTGTGTGTG+TGG + chr4_3:70051427-70051446 Msa0659690:three_prime_UTR 40.0%
! CGAGAACGAGAGAGGAATTT+TGG - chr4_3:70044837-70044856 None:intergenic 45.0%
! TGATTAGCTAGCTAGCTCAG+AGG + chr4_3:70045254-70045273 Msa0659690:intron 45.0%
! GATTAGCTAGCTAGCTCAGA+GGG + chr4_3:70045255-70045274 Msa0659690:intron 45.0%
! CAGCCTTGTAAATCCCATTC+TGG + chr4_3:70045742-70045761 Msa0659690:intron 45.0%
GACACTAGTAGTAGTAGGGT+AGG - chr4_3:70045803-70045822 None:intergenic 45.0%
TGGCTGATCACTGGATCATT+TGG + chr4_3:70046059-70046078 Msa0659690:CDS 45.0%
TTCCTCTGTCGGATCATTTG+TGG + chr4_3:70046189-70046208 Msa0659690:CDS 45.0%
TCCTCTGTCGGATCATTTGT+GGG + chr4_3:70046190-70046209 Msa0659690:CDS 45.0%
TTGCTGCATACGGAGAACAA+AGG - chr4_3:70046358-70046377 None:intergenic 45.0%
TTGTTCTCCGTATGCAGCAA+AGG + chr4_3:70046358-70046377 Msa0659690:CDS 45.0%
GACACCATTGGTCAGAAAGA+TGG + chr4_3:70046420-70046439 Msa0659690:CDS 45.0%
! TTTTACTGTGACGAAGCGTG+TGG + chr4_3:70046482-70046501 Msa0659690:CDS 45.0%
CTTTGACACAAAGAGGAGAG+AGG - chr4_3:70046640-70046659 None:intergenic 45.0%
AATCTGACTACGAACGGAAG+AGG - chr4_3:70046708-70046727 None:intergenic 45.0%
GGAGGTGGTTGTCATACTAA+TGG + chr4_3:70046755-70046774 Msa0659690:CDS 45.0%
AAGCGGAACAAGTACAACGA+TGG + chr4_3:70046839-70046858 Msa0659690:CDS 45.0%
AGCGGAACAAGTACAACGAT+GGG + chr4_3:70046840-70046859 Msa0659690:CDS 45.0%
! AATGGTAGAGCATCAGGGAA+TGG + chr4_3:70046884-70046903 Msa0659690:CDS 45.0%
! GGAAAGGGTATGAAATGGAG+AGG - chr4_3:70047520-70047539 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_3:70048284-70048303 Msa0659690:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_3:70048285-70048304 Msa0659690:intron 45.0%
CAGTCTCAATGGACATGTTC+TGG + chr4_3:70048475-70048494 Msa0659690:intron 45.0%
AACAATTCCAGACCTACCTC+AGG - chr4_3:70048546-70048565 None:intergenic 45.0%
!! TAGAGTATTGGTTTGTGGCG+GGG + chr4_3:70048584-70048603 Msa0659690:CDS 45.0%
GGAATAATTGCAACAGGTGG+AGG - chr4_3:70048663-70048682 None:intergenic 45.0%
AGGGGAATAATTGCAACAGG+TGG - chr4_3:70048666-70048685 None:intergenic 45.0%
CCTAGGGGAATAATTGCAAC+AGG - chr4_3:70048669-70048688 None:intergenic 45.0%
CCTGTTGCAATTATTCCCCT+AGG + chr4_3:70048666-70048685 Msa0659690:CDS 45.0%
CTTGCAGAAGAAGACTCTGA+AGG + chr4_3:70048825-70048844 Msa0659690:CDS 45.0%
TAGCACCCTAATGCCAATGA+GGG - chr4_3:70049221-70049240 None:intergenic 45.0%
TTAGCACCCTAATGCCAATG+AGG - chr4_3:70049222-70049241 None:intergenic 45.0%
CTCTCCTGGTTTCCATTTAG+AGG - chr4_3:70049295-70049314 None:intergenic 45.0%
GATGGCTAGCAATGTCACTA+TGG + chr4_3:70049334-70049353 Msa0659690:intron 45.0%
ACTTCAAGCCATACTTGCCA+TGG - chr4_3:70049598-70049617 None:intergenic 45.0%
ATGGCAAGTATGGCTTGAAG+TGG + chr4_3:70049597-70049616 Msa0659690:CDS 45.0%
CAAGTATGGCTTGAAGTGGA+CGG + chr4_3:70049601-70049620 Msa0659690:CDS 45.0%
AATATTGGGAGCTACATGGG+TGG + chr4_3:70049769-70049788 Msa0659690:CDS 45.0%
ACATGGGTGGAGTAGATCTT+TGG + chr4_3:70049782-70049801 Msa0659690:CDS 45.0%
CTCAAGCATCTTGTCATGCA+TGG - chr4_3:70049851-70049870 None:intergenic 45.0%
CATGCATGACAAGATGCTTG+AGG + chr4_3:70049849-70049868 Msa0659690:CDS 45.0%
TTTGTCCGGGTTTGAACCTA+GGG + chr4_3:70050237-70050256 Msa0659690:intron 45.0%
!! GTTTGATTTGCCCTGTAGGT+TGG + chr4_3:70050608-70050627 Msa0659690:intron 45.0%
CTTGTGAAAGTCCAACCTAC+AGG - chr4_3:70050622-70050641 None:intergenic 45.0%
GGTTCCCCATCTATTTGAAC+TGG - chr4_3:70050698-70050717 None:intergenic 45.0%
ACTCTATGTAGCCTGGTTGT+AGG - chr4_3:70050727-70050746 None:intergenic 45.0%
AGAGTTAACTCATCGTGGAC+AGG + chr4_3:70050742-70050761 Msa0659690:CDS 45.0%
TATGTGTACGGATTCCCGTT+AGG + chr4_3:70050828-70050847 Msa0659690:intron 45.0%
GGATTCCCGTTAGGAATCTT+AGG + chr4_3:70050837-70050856 Msa0659690:intron 45.0%
CTCAGGTATTCATGTTGAGG+AGG + chr4_3:70050953-70050972 Msa0659690:intron 45.0%
ATAGCAGCTGCTTGTCCTTT+AGG - chr4_3:70050994-70051013 None:intergenic 45.0%
TTAGAAGGCTGAACGAGAAG+CGG - chr4_3:70051117-70051136 None:intergenic 45.0%
GAGCGCAAAAACCCAAAGTT+GGG - chr4_3:70051148-70051167 None:intergenic 45.0%
ATGGTCCTATAAAAGGGGTC+TGG - chr4_3:70051170-70051189 None:intergenic 45.0%
! TTAGCTGCTTTGTGGAAGTG+TGG - chr4_3:70051232-70051251 None:intergenic 45.0%
GGTTGCAATATACACAGCCT+AGG - chr4_3:70051288-70051307 None:intergenic 45.0%
AGGCTGTGTATATTGCAACC+CGG + chr4_3:70051288-70051307 Msa0659690:three_prime_UTR 45.0%
!! AAATAAATAATAATAATAGT+TGG + chr4_3:70044722-70044741 Msa0659690:five_prime_UTR 5.0%
GTTTCCTTGGAAGAAGGGGA+AGG + chr4_3:70044771-70044790 Msa0659690:five_prime_UTR 50.0%
CTTGGAAGAAGGGGAAGGAA+GGG + chr4_3:70044776-70044795 Msa0659690:five_prime_UTR 50.0%
TTGGAAGAAGGGGAAGGAAG+GGG + chr4_3:70044777-70044796 Msa0659690:five_prime_UTR 50.0%
AGCGACGAGCGTCTTTGAAT+TGG + chr4_3:70046117-70046136 Msa0659690:CDS 50.0%
ATTGGATTAAAGCTGCGGCC+AGG + chr4_3:70046135-70046154 Msa0659690:CDS 50.0%
TTGGATTAAAGCTGCGGCCA+GGG + chr4_3:70046136-70046155 Msa0659690:CDS 50.0%
ACCCACAAATGATCCGACAG+AGG - chr4_3:70046194-70046213 None:intergenic 50.0%
ACAAACCGAGCAACGATGGA+GGG - chr4_3:70046318-70046337 None:intergenic 50.0%
GGACTGTAAATGTGTGGCTC+AGG + chr4_3:70046379-70046398 Msa0659690:CDS 50.0%
TGTAAATGTGTGGCTCAGGC+TGG + chr4_3:70046383-70046402 Msa0659690:CDS 50.0%
GTAAATGTGTGGCTCAGGCT+GGG + chr4_3:70046384-70046403 Msa0659690:CDS 50.0%
ACGACAATGCCATGTAGGAG+AGG - chr4_3:70046525-70046544 None:intergenic 50.0%
CTCCTACATGGCATTGTCGT+TGG + chr4_3:70046525-70046544 Msa0659690:CDS 50.0%
CACCAACGACAATGCCATGT+AGG - chr4_3:70046530-70046549 None:intergenic 50.0%
TTGTTCAGACTGTGCCCTGT+TGG + chr4_3:70047472-70047491 Msa0659690:intron 50.0%
TTCTCCTGACAATGACCCTG+TGG + chr4_3:70047872-70047891 Msa0659690:intron 50.0%
ATAGCCACAGGGTCATTGTC+AGG - chr4_3:70047879-70047898 None:intergenic 50.0%
GGACTCAAGACATAGCCACA+GGG - chr4_3:70047890-70047909 None:intergenic 50.0%
AGGACTCAAGACATAGCCAC+AGG - chr4_3:70047891-70047910 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_3:70048286-70048305 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_3:70048283-70048302 Msa0659690:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr4_3:70048289-70048308 Msa0659690:intron 50.0%
GCAATTATTCCCCTAGGCAC+TGG + chr4_3:70048672-70048691 Msa0659690:CDS 50.0%
TCCAGGGTTATGAATTGGGG+AGG + chr4_3:70048705-70048724 Msa0659690:CDS 50.0%
TCCTCCCCAATTCATAACCC+TGG - chr4_3:70048709-70048728 None:intergenic 50.0%
AGGGTTATGAATTGGGGAGG+AGG + chr4_3:70048708-70048727 Msa0659690:CDS 50.0%
TTCTCTGCACTGGATGGACA+GGG + chr4_3:70048732-70048751 Msa0659690:CDS 50.0%
AAGGAGGGAGAACATGTACC+TGG - chr4_3:70049038-70049057 None:intergenic 50.0%
!! GAACTTGTGCTGACTTGCCA+TGG + chr4_3:70049578-70049597 Msa0659690:CDS 50.0%
! CTGACTTGCCATGGCAAGTA+TGG + chr4_3:70049587-70049606 Msa0659690:CDS 50.0%
CCTATACCTGAAGTTTCCCC+AGG - chr4_3:70049900-70049919 None:intergenic 50.0%
CCTGGGGAAACTTCAGGTAT+AGG + chr4_3:70049897-70049916 Msa0659690:intron 50.0%
CTAGGTTCAAACCCGGACAA+AGG - chr4_3:70050238-70050257 None:intergenic 50.0%
CTTTGTCCGGGTTTGAACCT+AGG + chr4_3:70050236-70050255 Msa0659690:intron 50.0%
ATAGGCCCTAGGTTCAAACC+CGG - chr4_3:70050245-70050264 None:intergenic 50.0%
! CAAGCAAGAAGGCTAGCTCA+AGG + chr4_3:70050638-70050657 Msa0659690:CDS 50.0%
GGAGCGCAAAAACCCAAAGT+TGG - chr4_3:70051149-70051168 None:intergenic 50.0%
ACTGTTGCGTCTAACACCCT+AGG + chr4_3:70051268-70051287 Msa0659690:three_prime_UTR 50.0%
CCTTCCTTCCCCTTCTTCCA+AGG - chr4_3:70044778-70044797 None:intergenic 55.0%
CCTTGGAAGAAGGGGAAGGA+AGG + chr4_3:70044775-70044794 Msa0659690:five_prime_UTR 55.0%
GGGAAGGAAGGGGTTGTAAC+AGG + chr4_3:70044787-70044806 Msa0659690:five_prime_UTR 55.0%
CTGAAGAGCGAGAACGAGAG+AGG - chr4_3:70044845-70044864 None:intergenic 55.0%
CTCTCTCGTTCTCGCTCTTC+AGG + chr4_3:70044843-70044862 Msa0659690:five_prime_UTR 55.0%
TAGCTAGCTAGCTCAGAGGG+TGG + chr4_3:70045258-70045277 Msa0659690:intron 55.0%
TACTCCCCTCCATCGTTGCT+CGG + chr4_3:70046310-70046329 Msa0659690:CDS 55.0%
CAAACCGAGCAACGATGGAG+GGG - chr4_3:70046317-70046336 None:intergenic 55.0%
CACAAACCGAGCAACGATGG+AGG - chr4_3:70046319-70046338 None:intergenic 55.0%
! CTCCATCGTTGCTCGGTTTG+TGG + chr4_3:70046317-70046336 Msa0659690:CDS 55.0%
CACCACAAACCGAGCAACGA+TGG - chr4_3:70046322-70046341 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr4_3:70048291-70048310 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr4_3:70048297-70048316 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4_3:70048298-70048317 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4_3:70048297-70048316 Msa0659690:intron 55.0%
GAGTGCTTCTCAAGGTCCTG+AGG + chr4_3:70048527-70048546 Msa0659690:CDS 55.0%
GCTTCTCAAGGTCCTGAGGT+AGG + chr4_3:70048531-70048550 Msa0659690:CDS 55.0%
TCAAGGTCCTGAGGTAGGTC+TGG + chr4_3:70048536-70048555 Msa0659690:CDS 55.0%
!! GTATTGGTTTGTGGCGGGGA+TGG + chr4_3:70048588-70048607 Msa0659690:CDS 55.0%
CTTCTCTGCACTGGATGGAC+AGG + chr4_3:70048731-70048750 Msa0659690:CDS 55.0%
TGTTTGTGGAGCATGGCACC+TGG + chr4_3:70049879-70049898 Msa0659690:CDS 55.0%
GTTTGTGGAGCATGGCACCT+GGG + chr4_3:70049880-70049899 Msa0659690:CDS 55.0%
TTTGTGGAGCATGGCACCTG+GGG + chr4_3:70049881-70049900 Msa0659690:CDS 55.0%
ATGGCACCTGGGGAAACTTC+AGG + chr4_3:70049891-70049910 Msa0659690:CDS 55.0%
GGTTCAAACCCGGACAAAGG+AGG - chr4_3:70050235-70050254 None:intergenic 55.0%
! GCGCTCCAGACCCCTTTTAT+AGG + chr4_3:70051162-70051181 Msa0659690:three_prime_UTR 55.0%
! ATGGAGGGGAGTACGTGGTG+AGG - chr4_3:70046303-70046322 None:intergenic 60.0%
! CAACGATGGAGGGGAGTACG+TGG - chr4_3:70046308-70046327 None:intergenic 60.0%
!! ACCAGAAGTGGTGGGCAGCT+TGG + chr4_3:70046992-70047011 Msa0659690:CDS 60.0%
!! CCAGAAGTGGTGGGCAGCTT+GGG + chr4_3:70046993-70047012 Msa0659690:CDS 60.0%
CGGGGATGGCACTGTTGCAT+GGG + chr4_3:70048602-70048621 Msa0659690:CDS 60.0%
GGAGGCTTCTCTGCACTGGA+TGG + chr4_3:70048726-70048745 Msa0659690:CDS 60.0%
TCTGCACTGGATGGACAGGG+CGG + chr4_3:70048735-70048754 Msa0659690:CDS 60.0%
CCCAAGCTGCCCACCACTTC+TGG - chr4_3:70046996-70047015 None:intergenic 65.0%
GCGGGGATGGCACTGTTGCA+TGG + chr4_3:70048601-70048620 Msa0659690:CDS 65.0%
GGGAGGAGGCTTCTCTGCAC+TGG + chr4_3:70048722-70048741 Msa0659690:CDS 65.0%
CTGCACTGGATGGACAGGGC+GGG + chr4_3:70048736-70048755 Msa0659690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 70044698 70051497 70044698 ID=Msa0659690;Name=Msa0659690
chr4_3 mRNA 70044698 70051497 70044698 ID=Msa0659690-mRNA-1;Parent=Msa0659690;Name=Msa0659690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=310|1|1|1|0.85|0.75|8|387|705
chr4_3 exon 70044698 70044976 70044698 ID=Msa0659690-mRNA-1:exon:20675;Parent=Msa0659690-mRNA-1
chr4_3 exon 70045944 70047060 70045944 ID=Msa0659690-mRNA-1:exon:20676;Parent=Msa0659690-mRNA-1
chr4_3 exon 70048516 70048891 70048516 ID=Msa0659690-mRNA-1:exon:20677;Parent=Msa0659690-mRNA-1
chr4_3 exon 70048962 70049038 70048962 ID=Msa0659690-mRNA-1:exon:20678;Parent=Msa0659690-mRNA-1
chr4_3 exon 70049526 70049645 70049526 ID=Msa0659690-mRNA-1:exon:20679;Parent=Msa0659690-mRNA-1
chr4_3 exon 70049745 70049912 70049745 ID=Msa0659690-mRNA-1:exon:20680;Parent=Msa0659690-mRNA-1
chr4_3 exon 70050626 70050763 70050626 ID=Msa0659690-mRNA-1:exon:20681;Parent=Msa0659690-mRNA-1
chr4_3 exon 70050958 70051497 70050958 ID=Msa0659690-mRNA-1:exon:20682;Parent=Msa0659690-mRNA-1
chr4_3 five_prime_UTR 70044698 70044976 70044698 ID=Msa0659690-mRNA-1:five_prime_utr;Parent=Msa0659690-mRNA-1
chr4_3 five_prime_UTR 70045944 70045974 70045944 ID=Msa0659690-mRNA-1:five_prime_utr;Parent=Msa0659690-mRNA-1
chr4_3 CDS 70045975 70047060 70045975 ID=Msa0659690-mRNA-1:cds;Parent=Msa0659690-mRNA-1
chr4_3 CDS 70048516 70048891 70048516 ID=Msa0659690-mRNA-1:cds;Parent=Msa0659690-mRNA-1
chr4_3 CDS 70048962 70049038 70048962 ID=Msa0659690-mRNA-1:cds;Parent=Msa0659690-mRNA-1
chr4_3 CDS 70049526 70049645 70049526 ID=Msa0659690-mRNA-1:cds;Parent=Msa0659690-mRNA-1
chr4_3 CDS 70049745 70049912 70049745 ID=Msa0659690-mRNA-1:cds;Parent=Msa0659690-mRNA-1
chr4_3 CDS 70050626 70050763 70050626 ID=Msa0659690-mRNA-1:cds;Parent=Msa0659690-mRNA-1
chr4_3 CDS 70050958 70051110 70050958 ID=Msa0659690-mRNA-1:cds;Parent=Msa0659690-mRNA-1
chr4_3 three_prime_UTR 70051111 70051497 70051111 ID=Msa0659690-mRNA-1:three_prime_utr;Parent=Msa0659690-mRNA-1
Gene Sequence

>Msa0659690

ATGAGTTTTGTCATGTTCGATTTGGGAATTGTAATTTTGAGGTTTCTTACAAGCCCTGATGCTTCCATTGCATCTATTTTTGGATGGCTGATCACTGGATCATTTGGACTTGTAGCCGTCATATACGCTGTTCTCAAGTGGCAGCGACGAGCGTCTTTGAATTGGATTAAAGCTGCGGCCAGGGAAAAGAAGAAAGTTTGGAAAAAATTTAAAGTTCCTCTGTCGGATCATTTGTGGGTTGAAGATTTTACTTATGGGGAACAACCATCCACTTGTTGTTTCTGTTTGACTTCCCTATGGCCTTCTCAAAATTTAGGTGCAACAGCCTCACCACGTACTCCCCTCCATCGTTGCTCGGTTTGTGGTGTCGCAGCTCATTTCCTTTGTTCTCCGTATGCAGCAAAGGACTGTAAATGTGTGGCTCAGGCTGGGTTTAGTCATATTAGACACCATTGGTCAGAAAGATGGGTTAATGTGGATGATCATCATGAGATGTCTGCCTTCTGTTTTTACTGTGACGAAGCGTGTGGTGTCCCGTTTGTAAAATCCTCTCCTACATGGCATTGTCGTTGGTGTCAGCGCCTCATTCATGTGAAATGTCATAACAATTTGACTAGAGATTCTGGTGATTTTTGTGATTTGGGTTCTTTGAGGCCAATTATCCTCTCTCCTCTTTGTGTCAAAGAAGTTGATGAAAATCAAAAGGGTGGAAAACTAAGTTCTATTATAACCTCTTCCGTTCGTAGTCAGATTAGAAAGCGGCGTAACCATAATAAAAATGGAGGTGGTTGTCATACTAATGGTAAGTCACGAGGTTCAGCCGTTGCTGATCCAACATTATTAGAATATGTGTTGAACAGTCTTAAGCGGAACAAGTACAACGATGGGAAGCTCTTTGACCCCACAAAAAATGGTAGAGCATCAGGGAATGGTTTAAATGTTACCCCTAGCCAAATCAAGAAATACACGTTGGTTGATTTGCCAAAAGATGCTAGGCCACTTTTGGTCTTCATCAATACCAGAAGTGGTGGGCAGCTTGGGCCTTCTCTTCACAGAAGATTGAATATGCTACTAAATCCTGTTCAGGTCTTTGTATTGAGTGCTTCTCAAGGTCCTGAGGTAGGTCTGGAATTGTTCAAAAGTGTACCATATTTTAGAGTATTGGTTTGTGGCGGGGATGGCACTGTTGCATGGGTCCTCGATGCTATAGAAAAACACAATTTTGAGTCACCTCCACCTGTTGCAATTATTCCCCTAGGCACTGGAAATGATTTGTCCAGGGTTATGAATTGGGGAGGAGGCTTCTCTGCACTGGATGGACAGGGCGGGCTGACCATGCTTTTGCATGACATTAGCATTGCAGCAGTTACTATGTTAGATCGTTGGGAAGTTAAACTTGCAGAAGAAGACTCTGAAGGAAAACCACATAAAGTGAAAACTAAATCCATGATGAACTACCTAGGAATTGGATGTGATGCAAAGGTTGCATATGAATTTCATGTTACTCGAGAGATAAATCCTGAAAAGTTTAGTAGCCAGTTTTTTAATAAATTACGATATGCAAAAGAAGGAGCAAGAGACATTATGGACAGAACTTGTGCTGACTTGCCATGGCAAGTATGGCTTGAAGTGGACGGAAGAGACATTGAGATTCCCAAGGATTCAGAAGGCTTAATTGTGCTTAATATTGGGAGCTACATGGGTGGAGTAGATCTTTGGAAAAATGACTATGAGCATGATGATGATGATTTCAGTCTTCAATCCATGCATGACAAGATGCTTGAGGTAGTATGTGTTTGTGGAGCATGGCACCTGGGGAAACTTCAGGTTGGACTTTCACAAGCAAGAAGGCTAGCTCAAGGCAAAGTCATCAAGATACACTCTTCCAGTCCTTTCCCAGTTCAAATAGATGGGGAACCATTTATCCTACAACCAGGCTACATAGAGTTAACTCATCGTGGACAGGTATTCATGTTGAGGAGGACTTCAGAAGATGAGCCTAAAGGACAAGCAGCTGCTATAATGACAGAAGTATTATTAGAAGCGGAATGCAAGGGCATTATTAATACATCTCAGAGAAAAGTTCTTCTCAAGGACATAGCCATCAATCTTTCTTAA
Protein sequence

>Msa0659690

MSFVMFDLGIVILRFLTSPDASIASIFGWLITGSFGLVAVIYAVLKWQRRASLNWIKAAAREKKKVWKKFKVPLSDHLWVEDFTYGEQPSTCCFCLTSLWPSQNLGATASPRTPLHRCSVCGVAAHFLCSPYAAKDCKCVAQAGFSHIRHHWSERWVNVDDHHEMSAFCFYCDEACGVPFVKSSPTWHCRWCQRLIHVKCHNNLTRDSGDFCDLGSLRPIILSPLCVKEVDENQKGGKLSSIITSSVRSQIRKRRNHNKNGGGCHTNGKSRGSAVADPTLLEYVLNSLKRNKYNDGKLFDPTKNGRASGNGLNVTPSQIKKYTLVDLPKDARPLLVFINTRSGGQLGPSLHRRLNMLLNPVQVFVLSASQGPEVGLELFKSVPYFRVLVCGGDGTVAWVLDAIEKHNFESPPPVAIIPLGTGNDLSRVMNWGGGFSALDGQGGLTMLLHDISIAAVTMLDRWEVKLAEEDSEGKPHKVKTKSMMNYLGIGCDAKVAYEFHVTREINPEKFSSQFFNKLRYAKEGARDIMDRTCADLPWQVWLEVDGRDIEIPKDSEGLIVLNIGSYMGGVDLWKNDYEHDDDDFSLQSMHDKMLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIKIHSSSPFPVQIDGEPFILQPGYIELTHRGQVFMLRRTSEDEPKGQAAAIMTEVLLEAECKGIINTSQRKVLLKDIAINLS*