AlfalfaGEDB | Msa0705940

M. sativa cultivar zhongmu-4 / Msa0705940

KEGG: K00901
GO: GO:0003674 GO:0003824 GO:0004143 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022622 GO:0032501 GO:0032502 GO:0044237 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0099402
PFAM: PF00130.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705940	XP_003630377.2	98.723	705	9	0	1	705	1	705	0.0	1449

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705940	sp\|Q9FFN7\|DGK2_ARATH	66.760	716	219	6	5	705	1	712	0.0	980

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705940	G7LFQ9	98.723	705	9	0	1	705	1	705	0.0	1449

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0569670	Msa0705940	0.864897	8.735945e-65	-8.615850e-47
Msa0659690	Msa0705940	0.889037	3.466459e-73	-8.615850e-47
Msa0705940	Msa1031390	0.801103	1.054498e-48	-8.615850e-47
Msa0705940	Msa1343500	0.902333	1.079292e-78	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705940	MtrunA17_Chr8g0384961	98.723	705	9	0	1	705	1	705	0.0	1449
Msa0705940	MtrunA17_Chr4g0061331	50.141	708	320	9	26	705	25	727	0.0	704
Msa0705940	MtrunA17_Chr8g0360931	29.219	397	211	11	331	659	34	428	2.86e-37	145
Msa0705940	MtrunA17_Chr2g0323521	29.665	418	222	13	310	659	16	429	4.22e-37	145
Msa0705940	MtrunA17_Chr4g0022651	29.567	416	219	14	314	659	17	428	6.28e-37	144
Msa0705940	MtrunA17_Chr4g0072941	31.746	378	182	13	333	641	85	455	7.44e-37	144
Msa0705940	MtrunA17_Chr2g0305591	29.365	378	193	12	332	641	92	463	9.14e-33	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705940	AT5G63770.1	66.760	716	219	6	5	705	1	712	0.0	980
Msa0705940	AT5G63770.2	66.760	716	219	6	5	705	1	712	0.0	980
Msa0705940	AT5G07920.3	50.494	709	313	11	26	705	29	728	0.0	696
Msa0705940	AT5G07920.1	50.494	709	313	11	26	705	29	728	0.0	696
Msa0705940	AT5G07920.2	50.453	662	291	10	26	658	29	682	0.0	649
Msa0705940	AT2G20900.3	29.574	399	212	12	328	659	35	431	2.55e-36	143
Msa0705940	AT2G20900.2	29.574	399	212	12	328	659	35	431	2.55e-36	143
Msa0705940	AT2G20900.4	29.574	399	212	12	328	659	35	431	2.86e-36	144
Msa0705940	AT2G20900.1	29.574	399	212	12	328	659	35	431	2.86e-36	144
Msa0705940	AT4G28130.1	27.692	390	215	11	333	659	47	432	6.03e-36	142

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Find 203 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGCTAGGCCACTTT+TGG	0.323510	4_4:+78782983	Msa0705940:CDS
AAAAGTGGCCTAGCATCTTT+TGG	0.355294	4_4:-78782981	None:intergenic
AAAATTTAAAGTTCCTCTGT+CGG	0.542199	4_4:+78782203	Msa0705940:CDS
AAACAGAAACAACAAGTGGA+TGG	0.623509	4_4:-78782264	None:intergenic
AAATCATTTCCAGTGCCTAG+GGG	0.708420	4_4:-78784706	None:intergenic
AAATCCATGATGAACTACCT+AGG	0.642755	4_4:+78784895	Msa0705940:CDS
AAATTACGATATGCAAAAGA+AGG	0.539584	4_4:+78785556	Msa0705940:CDS
AACAATTCCAGACCTACCTC+AGG	0.563599	4_4:-78784568	None:intergenic
AACAATTTGACTAGAGATTC+TGG	0.272349	4_4:+78782603	Msa0705940:CDS
AACACATATTCTAATAATGT+TGG	0.469885	4_4:-78782831	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATATGTTTCCTTGGAAGA+AGG	+	chr4_4:78780787-78780806	Msa0705940:five_prime_UTR	30.0%
AATATGTTTCCTTGGAAGAA+GGG	+	chr4_4:78780788-78780807	Msa0705940:five_prime_UTR	30.0%
CGATTTGAATGAGATCAAAA+TGG	-	chr4_4:78780969-78780988	None:intergenic	30.0%
AAAGATGAGAGACATTGTAT+TGG	-	chr4_4:78781015-78781034	None:intergenic	30.0%
GTTGCAGCTATATTCAAAAA+TGG	-	chr4_4:78781073-78781092	None:intergenic	30.0%
AAAAAAGAAATTGTAGGGCA+CGG	-	chr4_4:78781135-78781154	None:intergenic	30.0%
ACGTGAATGTAGTATATGTT+TGG	-	chr4_4:78781584-78781603	None:intergenic	30.0%
GAGAAAATCAATTCTGATTG+AGG	+	chr4_4:78781687-78781706	Msa0705940:intron	30.0%
GGGTAGGAAAAAAAATTGAA+GGG	-	chr4_4:78781812-78781831	None:intergenic	30.0%
AGGGTAGGAAAAAAAATTGA+AGG	-	chr4_4:78781813-78781832	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	78780717	78787517	78780717	ID=Msa0705940;Name=Msa0705940
chr4_4	mRNA	78780717	78787517	78780717	ID=Msa0705940-mRNA-1;Parent=Msa0705940;Name=Msa0705940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=313\|1\|1\|1\|0.85\|0.75\|8\|386\|705
chr4_4	exon	78780717	78780998	78780717	ID=Msa0705940-mRNA-1:exon:25172;Parent=Msa0705940-mRNA-1
chr4_4	exon	78781969	78783085	78781969	ID=Msa0705940-mRNA-1:exon:25173;Parent=Msa0705940-mRNA-1
chr4_4	exon	78784541	78784916	78784541	ID=Msa0705940-mRNA-1:exon:25174;Parent=Msa0705940-mRNA-1
chr4_4	exon	78784987	78785063	78784987	ID=Msa0705940-mRNA-1:exon:25175;Parent=Msa0705940-mRNA-1
chr4_4	exon	78785547	78785666	78785547	ID=Msa0705940-mRNA-1:exon:25176;Parent=Msa0705940-mRNA-1
chr4_4	exon	78785766	78785933	78785766	ID=Msa0705940-mRNA-1:exon:25177;Parent=Msa0705940-mRNA-1
chr4_4	exon	78786647	78786784	78786647	ID=Msa0705940-mRNA-1:exon:25178;Parent=Msa0705940-mRNA-1
chr4_4	exon	78786979	78787517	78786979	ID=Msa0705940-mRNA-1:exon:25179;Parent=Msa0705940-mRNA-1
chr4_4	five_prime_UTR	78780717	78780998	78780717	ID=Msa0705940-mRNA-1:five_prime_utr;Parent=Msa0705940-mRNA-1
chr4_4	five_prime_UTR	78781969	78781999	78781969	ID=Msa0705940-mRNA-1:five_prime_utr;Parent=Msa0705940-mRNA-1
chr4_4	CDS	78782000	78783085	78782000	ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4	CDS	78784541	78784916	78784541	ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4	CDS	78784987	78785063	78784987	ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4	CDS	78785547	78785666	78785547	ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4	CDS	78785766	78785933	78785766	ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4	CDS	78786647	78786784	78786647	ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4	CDS	78786979	78787131	78786979	ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4	three_prime_UTR	78787132	78787517	78787132	ID=Msa0705940-mRNA-1:three_prime_utr;Parent=Msa0705940-mRNA-1

Gene Sequence

>Msa0705940

ATGAGTTTTGTCATGTTCGATTTGGGAATTGTAATTTTGAGGTTTCTTACAAGCCCTGATGCTTCCATTGCATCTATTTTTGGATGGCTGATCACTGGATCATTTGGACTTGTAGCCGTCATATACGCTGTTCTCAAGTGGCAGCGACGAGCGTCTTTGAATTGGATTAAAGCTGCGGCCAGGGAAAAGAAGAAAGTTTGGAAAAAATTTAAAGTTCCTCTGTCGGATCATTTGTGGGTTGAAGATTTTACTTATGGGGAACAACCATCCACTTGTTGTTTCTGTTTGACTTCCCTATGGCCTTCTCAAAATTTAGGTGCAACAGCCTCACCACGTACTCCCCTCCATCGTTGCTCGGTTTGTGGTGTCGCAGCTCATTTCCTTTGTTCTCCGTATGCAGCAAAGGACTGTAAATGTGTGGCTCAGGCTGGGTTTAGTCATATTAGACACCATTGGTCAGAAAGATGGGTTAATGTGGATGATCATCATGAGATGTCTGCCTTCTGTTTTTACTGTGACGAAGCGTGTGGTGTCCCGTTTGTAAAATCCTCTCCTACATGGCATTGTCGTTGGTGTCAGCGCCTCATTCATGTGAAATGTCATAACAATTTGACTAGAGATTCTGGTGATTTTTGTGATTTGGGTTCTTTGAGGCCAATTATCCTCTCTCCTCTTTGTGTCAAAGAAGTTGATGAAAATCAAAAGGGTGGAAAACTAAGTTCTATTATAACCTCTTCCGTTCGTAGTCAGATTAGAAAGCGGCGTAACCATAATAAAAATGGAGGTGGTTGTCATACTAATGGTAAGTCACGAGGTTCAGCCGTTGCTGATCCAACATTATTAGAATATGTGTTGAACAGTCTTAAGCGGAACAAGTACAACGATGGGAAGCTCTTTGACCCCACAAAAAATGGTAGAGCATCAGGGAATGGTTTAAATGTTACCCCTAGCCAAATCAAGAAATACACGTTGGTTGATTTGCCAAAAGATGCTAGGCCACTTTTGGTCTTCATCAATACCAGAAGTGGTGGGCAGCTTGGGCCTTCTCTTCACAGAAGATTGAATATGCTACTAAATCCTGTTCAGGTCTTTGTATTGAGTGCTTCTCAAGGTCCTGAGGTAGGTCTGGAATTGTTCAAAAGTGTACCATATTTTAGAGTATTGGTTTGTGGCGGGGATGGCACTGTTGCATGGGTCCTCGATGCTATAGAAAAACACAATTTTGAGTCACCTCCACCTGTTGCAATTATTCCCCTAGGCACTGGAAATGATTTGTCCAGGGTTATGAATTGGGGAGGAGGCTTCTCTGCACTGGATGGACAGGGCGGGCTGACCATGCTTTTGCATGACATTAGCATTGCAGCAGTTACTATGTTAGATCGTTGGGAAGTTAAACTTGCAGAAGAAGACTCTGAAGGAAAACCACATAAAGTGAAAACTAAATCCATGATGAACTACCTAGGAATTGGATGTGATGCAAAGGTTGCATATGAATTTCATGTTACTCGAGAGATAAATCCTGAAAAGTTTAGTAGCCAGTTTTTTAATAAATTACGATATGCAAAAGAAGGAGCAAGAGACATTATGGACAGAACTTGTGCTGACTTGCCATGGCAAGTATGGCTTGAAGTGGACGGAAGAGACATTGAGATTCCCAAGGATTCAGAAGGCTTAATTGTGCTTAATATTGGGAGCTACATGGGTGGAGTAGATCTTTGGAAAAATGACTATGAGCATGATGATGATGATTTCAGTCTTCAATCCATGCATGACAAGATGCTTGAGGTAGTATGTGTTTGTGGAGCATGGCACCTGGGGAAACTTCAGGTTGGACTTTCACAAGCAAGAAGGCTAGCTCAAGGCAAAGTCATCAAGATACACTCTTCCAGTCCTTTCCCAGTTCAAATAGATGGGGAACCATTTATCCTACAACCAGGCTACATAGAGTTAACTCATCGTGGACAGGTATTCATGTTGAGGAGGACTTCAGAAGATGAGCCTAAAGGACAAGCAGCTGCTATAATGACAGAAGTATTATTAGAAGCGGAATGCAAGGGCATTATTAATACATCTCAGAGAAAAGTTCTTCTCAAGGACATAGCCATCAATCTTTCTTAA

Protein sequence

>Msa0705940

MSFVMFDLGIVILRFLTSPDASIASIFGWLITGSFGLVAVIYAVLKWQRRASLNWIKAAAREKKKVWKKFKVPLSDHLWVEDFTYGEQPSTCCFCLTSLWPSQNLGATASPRTPLHRCSVCGVAAHFLCSPYAAKDCKCVAQAGFSHIRHHWSERWVNVDDHHEMSAFCFYCDEACGVPFVKSSPTWHCRWCQRLIHVKCHNNLTRDSGDFCDLGSLRPIILSPLCVKEVDENQKGGKLSSIITSSVRSQIRKRRNHNKNGGGCHTNGKSRGSAVADPTLLEYVLNSLKRNKYNDGKLFDPTKNGRASGNGLNVTPSQIKKYTLVDLPKDARPLLVFINTRSGGQLGPSLHRRLNMLLNPVQVFVLSASQGPEVGLELFKSVPYFRVLVCGGDGTVAWVLDAIEKHNFESPPPVAIIPLGTGNDLSRVMNWGGGFSALDGQGGLTMLLHDISIAAVTMLDRWEVKLAEEDSEGKPHKVKTKSMMNYLGIGCDAKVAYEFHVTREINPEKFSSQFFNKLRYAKEGARDIMDRTCADLPWQVWLEVDGRDIEIPKDSEGLIVLNIGSYMGGVDLWKNDYEHDDDDFSLQSMHDKMLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIKIHSSSPFPVQIDGEPFILQPGYIELTHRGQVFMLRRTSEDEPKGQAAAIMTEVLLEAECKGIINTSQRKVLLKDIAINLS*