AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705940 MtrunA17_Chr8g0384961 98.723 705 9 0 1 705 1 705 0.0 1449
Msa0705940 MtrunA17_Chr4g0061331 50.141 708 320 9 26 705 25 727 0.0 704
Msa0705940 MtrunA17_Chr8g0360931 29.219 397 211 11 331 659 34 428 2.86e-37 145
Msa0705940 MtrunA17_Chr2g0323521 29.665 418 222 13 310 659 16 429 4.22e-37 145
Msa0705940 MtrunA17_Chr4g0022651 29.567 416 219 14 314 659 17 428 6.28e-37 144
Msa0705940 MtrunA17_Chr4g0072941 31.746 378 182 13 333 641 85 455 7.44e-37 144
Msa0705940 MtrunA17_Chr2g0305591 29.365 378 193 12 332 641 92 463 9.14e-33 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705940 AT5G63770.1 66.760 716 219 6 5 705 1 712 0.0 980
Msa0705940 AT5G63770.2 66.760 716 219 6 5 705 1 712 0.0 980
Msa0705940 AT5G07920.3 50.494 709 313 11 26 705 29 728 0.0 696
Msa0705940 AT5G07920.1 50.494 709 313 11 26 705 29 728 0.0 696
Msa0705940 AT5G07920.2 50.453 662 291 10 26 658 29 682 0.0 649
Msa0705940 AT2G20900.3 29.574 399 212 12 328 659 35 431 2.55e-36 143
Msa0705940 AT2G20900.2 29.574 399 212 12 328 659 35 431 2.55e-36 143
Msa0705940 AT2G20900.4 29.574 399 212 12 328 659 35 431 2.86e-36 144
Msa0705940 AT2G20900.1 29.574 399 212 12 328 659 35 431 2.86e-36 144
Msa0705940 AT4G28130.1 27.692 390 215 11 333 659 47 432 6.03e-36 142
Msa0705940 AT5G57690.1 29.058 382 187 12 333 641 90 460 1.67e-35 141
Msa0705940 AT2G18730.1 30.343 379 186 13 333 641 91 461 1.05e-33 135
Msa0705940 AT4G30340.1 29.319 382 187 13 333 641 94 465 3.08e-33 134
Msa0705940 AT4G30340.2 33.755 237 105 8 333 521 94 326 9.34e-27 113

Find 203 sgRNAs with CRISPR-Local

Find 462 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGAACGAGAGAGGAATTT+TGG 0.117261 4_4:-78780856 None:intergenic
CTATGGCCTTCTCAAAATTT+AGG 0.158150 4_4:+78782294 Msa0705940:CDS
AATGATCAGGTTGTACATTT+TGG 0.221591 4_4:+78781960 Msa0705940:intron
CTCTCTCGTTCTCGCTCTTC+AGG 0.227603 4_4:+78780865 Msa0705940:five_prime_UTR
GGCTTAATTGTGCTTAATAT+TGG 0.236352 4_4:+78785775 Msa0705940:CDS
CCAACGTGTATTTCTTGATT+TGG 0.257432 4_4:-78782950 None:intergenic
AACAATTTGACTAGAGATTC+TGG 0.272349 4_4:+78782603 Msa0705940:CDS
CCCAAGCTGCCCACCACTTC+TGG 0.283169 4_4:-78783018 None:intergenic
CCTTTCCCAGTTCAAATAGA+TGG 0.283248 4_4:+78786710 Msa0705940:CDS
CTAAAATAGTTGCCCAACTT+TGG 0.307010 4_4:+78787154 Msa0705940:three_prime_UTR
CAAAGAGGAGAGAGGATAAT+TGG 0.308348 4_4:-78782654 None:intergenic
CTGACTTGCCATGGCAAGTA+TGG 0.313060 4_4:+78785608 Msa0705940:CDS
CAAACCAATACTCTAAAATA+TGG 0.318489 4_4:-78784601 None:intergenic
ATTTGTCCAGGGTTATGAAT+TGG 0.320327 4_4:+78784725 Msa0705940:CDS
AAAAGATGCTAGGCCACTTT+TGG 0.323510 4_4:+78782983 Msa0705940:CDS
TAGCCTGGTTGTAGGATAAA+TGG 0.328389 4_4:-78786737 None:intergenic
AGAAGGAGCAAGAGACATTA+TGG 0.333839 4_4:+78785573 Msa0705940:CDS
ATAGCAGCTGCTTGTCCTTT+AGG 0.335006 4_4:-78787012 None:intergenic
GCTTAATTGTGCTTAATATT+GGG 0.337779 4_4:+78785776 Msa0705940:CDS
TGGCTGATCACTGGATCATT+TGG 0.342110 4_4:+78782084 Msa0705940:CDS
GGTTCCCCATCTATTTGAAC+TGG 0.347647 4_4:-78786716 None:intergenic
AAAAGTGGCCTAGCATCTTT+TGG 0.355294 4_4:-78782981 None:intergenic
TAAAATAGTTGCCCAACTTT+GGG 0.363670 4_4:+78787155 Msa0705940:three_prime_UTR
TTTGTCCAGGGTTATGAATT+GGG 0.365198 4_4:+78784726 Msa0705940:CDS
GGGAAGGAAGGGGTTGTAAC+AGG 0.368252 4_4:+78780809 Msa0705940:five_prime_UTR
CCAGAAGTGGTGGGCAGCTT+GGG 0.370938 4_4:+78783018 Msa0705940:CDS
TACTGATATGTATATGTTCA+TGG 0.373326 4_4:+78787413 Msa0705940:three_prime_UTR
TGTAAATGTGTGGCTCAGGC+TGG 0.373393 4_4:+78782408 Msa0705940:CDS
CTCCATCGTTGCTCGGTTTG+TGG 0.376745 4_4:+78782342 Msa0705940:CDS
ACATGGGTGGAGTAGATCTT+TGG 0.383148 4_4:+78785803 Msa0705940:CDS
CTCTAATCTCATTTGGGTGT+TGG 0.384881 4_4:-78787379 None:intergenic
GCGGGGATGGCACTGTTGCA+TGG 0.389027 4_4:+78784626 Msa0705940:CDS
CTTCTCTGCACTGGATGGAC+AGG 0.393997 4_4:+78784756 Msa0705940:CDS
AGCGACGAGCGTCTTTGAAT+TGG 0.396069 4_4:+78782142 Msa0705940:CDS
TTCCTCTGTCGGATCATTTG+TGG 0.397710 4_4:+78782214 Msa0705940:CDS
CGATTTGAATGAGATCAAAA+TGG 0.403141 4_4:-78780966 None:intergenic
ATCTTACATTAGCTGCTTTG+TGG 0.403557 4_4:-78787258 None:intergenic
AGTTACTATGTTAGATCGTT+GGG 0.404411 4_4:+78784819 Msa0705940:CDS
TCATTCAAATCGATCGTGTT+AGG 0.407253 4_4:+78780977 Msa0705940:five_prime_UTR
ACCAGAAGTGGTGGGCAGCT+TGG 0.411845 4_4:+78783017 Msa0705940:CDS
CCAGGGAAAAGAAGAAAGTT+TGG 0.416730 4_4:+78782178 Msa0705940:CDS
TCCTCTGTCGGATCATTTGT+GGG 0.421592 4_4:+78782215 Msa0705940:CDS
GACACCATTGGTCAGAAAGA+TGG 0.424732 4_4:+78782445 Msa0705940:CDS
AATCAAGTAATCACCTGAAC+AGG 0.428109 4_4:-78783077 None:intergenic
AGAAGTTGATGAAAATCAAA+AGG 0.428769 4_4:+78782683 Msa0705940:CDS
TATGCTACTAAATCCTGTTC+AGG 0.429704 4_4:+78783064 Msa0705940:CDS
AATAAAATAATATGTTTCCT+TGG 0.430920 4_4:+78780780 Msa0705940:five_prime_UTR
TCAAGGTCCTGAGGTAGGTC+TGG 0.435183 4_4:+78784561 Msa0705940:CDS
CGGGGATGGCACTGTTGCAT+GGG 0.436182 4_4:+78784627 Msa0705940:CDS
GGGAGGAGGCTTCTCTGCAC+TGG 0.438297 4_4:+78784747 Msa0705940:CDS
ACTCTATGTAGCCTGGTTGT+AGG 0.440612 4_4:-78786745 None:intergenic
ATGGCACCTGGGGAAACTTC+AGG 0.443641 4_4:+78785912 Msa0705940:CDS
ATGTATATGTTCATGGGTCT+TGG 0.444422 4_4:+78787420 Msa0705940:three_prime_UTR
ATAGATGCAATGGAAGCATC+AGG 0.447107 4_4:-78782054 None:intergenic
CTTGAGGTAGTATGTGTTTG+TGG 0.447255 4_4:+78785886 Msa0705940:CDS
TACTCCCCTCCATCGTTGCT+CGG 0.452691 4_4:+78782335 Msa0705940:CDS
GGAGGTGGTTGTCATACTAA+TGG 0.454823 4_4:+78782780 Msa0705940:CDS
TAATATGTTTCCTTGGAAGA+AGG 0.460923 4_4:+78780787 Msa0705940:five_prime_UTR
CAACACCCAAATGAGATTAG+AGG 0.461132 4_4:+78787380 Msa0705940:three_prime_UTR
GTGTATTTCTTGATTTGGCT+AGG 0.463049 4_4:-78782945 None:intergenic
AACACATATTCTAATAATGT+TGG 0.469885 4_4:-78782831 None:intergenic
CCTTCCTTCCCCTTCTTCCA+AGG 0.471623 4_4:-78780797 None:intergenic
GCAATTATTCCCCTAGGCAC+TGG 0.473554 4_4:+78784697 Msa0705940:CDS
CTTTCCCAGTTCAAATAGAT+GGG 0.476790 4_4:+78786711 Msa0705940:CDS
TCCTGAAAAGTTTAGTAGCC+AGG 0.480291 4_4:+78785042 Msa0705940:CDS
ATTGGATTAAAGCTGCGGCC+AGG 0.481183 4_4:+78782160 Msa0705940:CDS
TGTATTTCTTGATTTGGCTA+GGG 0.481749 4_4:-78782944 None:intergenic
CTTGGAAGAAGGGGAAGGAA+GGG 0.486629 4_4:+78780798 Msa0705940:five_prime_UTR
TTAGAGTATTGGTTTGTGGC+GGG 0.486814 4_4:+78784608 Msa0705940:CDS
CAAATCATTTCCAGTGCCTA+GGG 0.490800 4_4:-78784707 None:intergenic
CTCCTACATGGCATTGTCGT+TGG 0.492326 4_4:+78782550 Msa0705940:CDS
TCAACTTCTTTGACACAAAG+AGG 0.493022 4_4:-78782669 None:intergenic
AATATGTTTCCTTGGAAGAA+GGG 0.493561 4_4:+78780788 Msa0705940:five_prime_UTR
CCTAGGGGAATAATTGCAAC+AGG 0.494366 4_4:-78784691 None:intergenic
GCACTGGAAATGATTTGTCC+AGG 0.495702 4_4:+78784713 Msa0705940:CDS
TGTTTGTGGAGCATGGCACC+TGG 0.496233 4_4:+78785900 Msa0705940:CDS
TTACAGTCCTTTGCTGCATA+CGG 0.496296 4_4:-78782390 None:intergenic
ACACCATTGGTCAGAAAGAT+GGG 0.497299 4_4:+78782446 Msa0705940:CDS
ATGGTCCTATAAAAGGGGTC+TGG 0.497596 4_4:-78787188 None:intergenic
GGAATAATTGCAACAGGTGG+AGG 0.497750 4_4:-78784685 None:intergenic
CAGTTACTATGTTAGATCGT+TGG 0.497824 4_4:+78784818 Msa0705940:CDS
CCTTGGAAGAAGGGGAAGGA+AGG 0.498394 4_4:+78780797 Msa0705940:five_prime_UTR
CGGATCTTAAGAAAGATTGA+TGG 0.504050 4_4:-78787115 None:intergenic
TTTGTGATTTGGGTTCTTTG+AGG 0.504434 4_4:+78782631 Msa0705940:CDS
CTCAAGCATCTTGTCATGCA+TGG 0.504681 4_4:-78785869 None:intergenic
GTTTCTGTTTGACTTCCCTA+TGG 0.506997 4_4:+78782277 Msa0705940:CDS
GCTTAATATTGGGAGCTACA+TGG 0.509872 4_4:+78785786 Msa0705940:CDS
TTGGATTAAAGCTGCGGCCA+GGG 0.511143 4_4:+78782161 Msa0705940:CDS
TTGGAAGAAGGGGAAGGAAG+GGG 0.512346 4_4:+78780799 Msa0705940:five_prime_UTR
CACCACAAACCGAGCAACGA+TGG 0.514753 4_4:-78782344 None:intergenic
CCATCTATTTGAACTGGGAA+AGG 0.516877 4_4:-78786710 None:intergenic
AGGGTTATGAATTGGGGAGG+AGG 0.517441 4_4:+78784733 Msa0705940:CDS
CTGCACTGGATGGACAGGGC+GGG 0.519579 4_4:+78784761 Msa0705940:CDS
GTATTGGTTTGTGGCGGGGA+TGG 0.520136 4_4:+78784613 Msa0705940:CDS
GTAAATGTGTGGCTCAGGCT+GGG 0.521953 4_4:+78782409 Msa0705940:CDS
GGAGGCTTCTCTGCACTGGA+TGG 0.522202 4_4:+78784751 Msa0705940:CDS
TATGACATTTCACATGAATG+AGG 0.525047 4_4:-78782581 None:intergenic
TTAGTCATATTAGACACCAT+TGG 0.526392 4_4:+78782433 Msa0705940:CDS
AAGTTAACAAACAGCTTCCA+AGG 0.526457 4_4:+78787482 Msa0705940:three_prime_UTR
TTGTAAAATCCTCTCCTACA+TGG 0.527594 4_4:+78782538 Msa0705940:CDS
GGACTGTAAATGTGTGGCTC+AGG 0.529683 4_4:+78782404 Msa0705940:CDS
TTGTTCTCCGTATGCAGCAA+AGG 0.536894 4_4:+78782383 Msa0705940:CDS
TTGATTTGCCAAAAGATGCT+AGG 0.537796 4_4:+78782973 Msa0705940:CDS
AAATTACGATATGCAAAAGA+AGG 0.539584 4_4:+78785556 Msa0705940:CDS
CCTATACCTGAAGTTTCCCC+AGG 0.540525 4_4:-78785918 None:intergenic
TTCATCAATACCAGAAGTGG+TGG 0.542080 4_4:+78783008 Msa0705940:CDS
AAAATTTAAAGTTCCTCTGT+CGG 0.542199 4_4:+78782203 Msa0705940:CDS
TTGTCCAGGGTTATGAATTG+GGG 0.543064 4_4:+78784727 Msa0705940:CDS
TAACCCATCTTTCTGACCAA+TGG 0.545670 4_4:-78782449 None:intergenic
GAAGTTGATGAAAATCAAAA+GGG 0.545718 4_4:+78782684 Msa0705940:CDS
CACTGGAAATGATTTGTCCA+GGG 0.546870 4_4:+78784714 Msa0705940:CDS
TAGAGTATTGGTTTGTGGCG+GGG 0.547599 4_4:+78784609 Msa0705940:CDS
CTTAATATTGGGAGCTACAT+GGG 0.548113 4_4:+78785787 Msa0705940:CDS
GTTGATGAAAATCAAAAGGG+TGG 0.550454 4_4:+78782687 Msa0705940:CDS
TTTGTATTGAGTGCTTCTCA+AGG 0.550465 4_4:+78784544 Msa0705940:CDS
GGTTGCAATATACACAGCCT+AGG 0.551123 4_4:-78787306 None:intergenic
GTATTTCTTGATTTGGCTAG+GGG 0.552227 4_4:-78782943 None:intergenic
TTCAATCTTCTGTGAAGAGA+AGG 0.552681 4_4:-78783041 None:intergenic
ACAAACCGAGCAACGATGGA+GGG 0.557150 4_4:-78782340 None:intergenic
GACAGAAGTATTATTAGAAG+CGG 0.557422 4_4:+78787038 Msa0705940:CDS
TTCTCTGCACTGGATGGACA+GGG 0.560238 4_4:+78784757 Msa0705940:CDS
TGAGTTAACTCTATGTAGCC+TGG 0.560280 4_4:-78786752 None:intergenic
CCTGTTGCAATTATTCCCCT+AGG 0.560632 4_4:+78784691 Msa0705940:CDS
ATTATTAGAAGCGGAATGCA+AGG 0.561033 4_4:+78787047 Msa0705940:CDS
TCCTCCCCAATTCATAACCC+TGG 0.562331 4_4:-78784731 None:intergenic
AATGGTAGAGCATCAGGGAA+TGG 0.563261 4_4:+78782909 Msa0705940:CDS
AACAATTCCAGACCTACCTC+AGG 0.563599 4_4:-78784568 None:intergenic
ACTGATATGTATATGTTCAT+GGG 0.564421 4_4:+78787414 Msa0705940:three_prime_UTR
ATATGTTTCCTTGGAAGAAG+GGG 0.566391 4_4:+78780789 Msa0705940:five_prime_UTR
GTCTTCATCAATACCAGAAG+TGG 0.567567 4_4:+78783005 Msa0705940:CDS
AGAGTTAACTCATCGTGGAC+AGG 0.568974 4_4:+78786763 Msa0705940:CDS
AACACCCAAATGAGATTAGA+GGG 0.570406 4_4:+78787381 Msa0705940:three_prime_UTR
GCTTCTCAAGGTCCTGAGGT+AGG 0.571347 4_4:+78784556 Msa0705940:CDS
TAGTATGTGTTTGTGGAGCA+TGG 0.572843 4_4:+78785893 Msa0705940:CDS
CACAAACCGAGCAACGATGG+AGG 0.572989 4_4:-78782341 None:intergenic
TTGGACTTTCACAAGCAAGA+AGG 0.573900 4_4:+78786648 Msa0705940:CDS
ACTTCAGAAGATGAGCCTAA+AGG 0.574123 4_4:+78786997 Msa0705940:CDS
TCAGAGAAAAGTTCTTCTCA+AGG 0.575293 4_4:+78787086 Msa0705940:CDS
TCCAGGGTTATGAATTGGGG+AGG 0.578634 4_4:+78784730 Msa0705940:CDS
ACAAATCATTTCCAGTGCCT+AGG 0.580261 4_4:-78784708 None:intergenic
AGTACCTAGGTAGTTCATCA+TGG 0.582057 4_4:-78784899 None:intergenic
TTTAGAGTATTGGTTTGTGG+CGG 0.586035 4_4:+78784607 Msa0705940:CDS
GTTCCCCATCTATTTGAACT+GGG 0.587718 4_4:-78786715 None:intergenic
ATACTCAGGTATTCATGTTG+AGG 0.588169 4_4:+78786971 Msa0705940:intron
GAACTTGTGCTGACTTGCCA+TGG 0.588243 4_4:+78785599 Msa0705940:CDS
AGCGGAACAAGTACAACGAT+GGG 0.589787 4_4:+78782865 Msa0705940:CDS
TTAGAAGGCTGAACGAGAAG+CGG 0.593274 4_4:-78787135 None:intergenic
CTCAGGTATTCATGTTGAGG+AGG 0.594023 4_4:+78786974 Msa0705940:intron
TCATATACGCTGTTCTCAAG+TGG 0.595470 4_4:+78782118 Msa0705940:CDS
CTGAAGAGCGAGAACGAGAG+AGG 0.596739 4_4:-78780864 None:intergenic
GTCAGAAAGATGGGTTAATG+TGG 0.597798 4_4:+78782455 Msa0705940:CDS
ACTGTTGCGTCTAACACCCT+AGG 0.600078 4_4:+78787289 Msa0705940:three_prime_UTR
ACTTCAAGCCATACTTGCCA+TGG 0.604236 4_4:-78785616 None:intergenic
AATCTGACTACGAACGGAAG+AGG 0.604553 4_4:-78782730 None:intergenic
TCTGCACTGGATGGACAGGG+CGG 0.605556 4_4:+78784760 Msa0705940:CDS
GTTTCCTTGGAAGAAGGGGA+AGG 0.608328 4_4:+78780793 Msa0705940:five_prime_UTR
CACCAACGACAATGCCATGT+AGG 0.612205 4_4:-78782552 None:intergenic
TTGTATACGTAGTGTGTGTG+TGG 0.612544 4_4:+78787447 Msa0705940:three_prime_UTR
ATGTGTTGAACAGTCTTAAG+CGG 0.613628 4_4:+78782847 Msa0705940:CDS
CAAGTATGGCTTGAAGTGGA+CGG 0.614916 4_4:+78785622 Msa0705940:CDS
CAAACCGAGCAACGATGGAG+GGG 0.615893 4_4:-78782339 None:intergenic
CTTGCAGAAGAAGACTCTGA+AGG 0.617154 4_4:+78784850 Msa0705940:CDS
CTTTCTAATCTGACTACGAA+CGG 0.619916 4_4:-78782736 None:intergenic
CAAGCAAGAAGGCTAGCTCA+AGG 0.620516 4_4:+78786659 Msa0705940:CDS
TAATAATGTTGGATCAGCAA+CGG 0.620656 4_4:-78782820 None:intergenic
TTTGAATTGGATTAAAGCTG+CGG 0.622591 4_4:+78782155 Msa0705940:CDS
GCTAATGTCATGCAAAAGCA+TGG 0.623168 4_4:-78784788 None:intergenic
AAACAGAAACAACAAGTGGA+TGG 0.623509 4_4:-78782264 None:intergenic
TATTTGAACTGGGAAAGGAC+TGG 0.625634 4_4:-78786705 None:intergenic
CTTTGACACAAAGAGGAGAG+AGG 0.630517 4_4:-78782662 None:intergenic
GTATTGATGAAGACCAAAAG+TGG 0.630832 4_4:-78782996 None:intergenic
GAGTGCTTCTCAAGGTCCTG+AGG 0.635853 4_4:+78784552 Msa0705940:CDS
ATGGCAAGTATGGCTTGAAG+TGG 0.638346 4_4:+78785618 Msa0705940:CDS
TTTGTGGAGCATGGCACCTG+GGG 0.638912 4_4:+78785902 Msa0705940:CDS
CAACGATGGAGGGGAGTACG+TGG 0.640506 4_4:-78782330 None:intergenic
AAGCGGAACAAGTACAACGA+TGG 0.640980 4_4:+78782864 Msa0705940:CDS
AGGGGAATAATTGCAACAGG+TGG 0.642218 4_4:-78784688 None:intergenic
AAATCCATGATGAACTACCT+AGG 0.642755 4_4:+78784895 Msa0705940:CDS
TAGATGCAATGGAAGCATCA+GGG 0.643701 4_4:-78782053 None:intergenic
TTATTAGAAGCGGAATGCAA+GGG 0.645490 4_4:+78787048 Msa0705940:CDS
AGGAATTGGATGTGATGCAA+AGG 0.645990 4_4:+78784985 Msa0705940:intron
CATGCATGACAAGATGCTTG+AGG 0.647805 4_4:+78785870 Msa0705940:CDS
GTTTGTGGAGCATGGCACCT+GGG 0.648926 4_4:+78785901 Msa0705940:CDS
CTTGAGAACAGCGTATATGA+CGG 0.649367 4_4:-78782115 None:intergenic
ACGACAATGCCATGTAGGAG+AGG 0.650346 4_4:-78782547 None:intergenic
TTAGCTGCTTTGTGGAAGTG+TGG 0.650819 4_4:-78787250 None:intergenic
GTTGCAATATACACAGCCTA+GGG 0.651900 4_4:-78787305 None:intergenic
AAGAGACATTGAGATTCCCA+AGG 0.653403 4_4:+78785645 Msa0705940:CDS
TTTCCCAGTTCAAATAGATG+GGG 0.658576 4_4:+78786712 Msa0705940:CDS
AGTCAAACAGAAACAACAAG+TGG 0.662259 4_4:-78782268 None:intergenic
ATGGAGGGGAGTACGTGGTG+AGG 0.665215 4_4:-78782325 None:intergenic
TTCGTAGTCAGATTAGAAAG+CGG 0.668976 4_4:+78782739 Msa0705940:CDS
CATACTAATGGTAAGTCACG+AGG 0.672018 4_4:+78782792 Msa0705940:CDS
CCAAATCAAGAAATACACGT+TGG 0.672676 4_4:+78782950 Msa0705940:CDS
GAACCATTTATCCTACAACC+AGG 0.677637 4_4:+78786734 Msa0705940:CDS
TCATCAATACCAGAAGTGGT+GGG 0.679359 4_4:+78783009 Msa0705940:CDS
TTGCTGCATACGGAGAACAA+AGG 0.694647 4_4:-78782380 None:intergenic
ACCCACAAATGATCCGACAG+AGG 0.696039 4_4:-78782216 None:intergenic
AGGCTGTGTATATTGCAACC+CGG 0.700697 4_4:+78787309 Msa0705940:three_prime_UTR
TACATAGAGTTAACTCATCG+TGG 0.708322 4_4:+78786758 Msa0705940:CDS
AAATCATTTCCAGTGCCTAG+GGG 0.708420 4_4:-78784706 None:intergenic
AATATTGGGAGCTACATGGG+TGG 0.721837 4_4:+78785790 Msa0705940:CDS
AGCAAAGGACTGTAAATGTG+TGG 0.723555 4_4:+78782398 Msa0705940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAAAAGAAATTGTA+GGG - chr4_4:78781140-78781159 None:intergenic 10.0%
!! AAATATAAAAAAGAAATTGT+AGG - chr4_4:78781141-78781160 None:intergenic 10.0%
!! TACATAAATAAAAATGATAA+TGG - chr4_4:78781164-78781183 None:intergenic 10.0%
!! TGAAATTAAATATAAAGTAT+GGG - chr4_4:78781861-78781880 None:intergenic 10.0%
!!! AAAAAATATTTTATACTTGA+AGG - chr4_4:78783737-78783756 None:intergenic 10.0%
!! AACATTTATAAAAAAGTAAA+AGG + chr4_4:78783809-78783828 Msa0705940:intron 10.0%
!! TTTACATATAAATTTATAGA+AGG - chr4_4:78785714-78785733 None:intergenic 10.0%
!!! TTAAATTTTTTTTTTCATGA+AGG + chr4_4:78785744-78785763 Msa0705940:intron 10.0%
!!! GGAAACATATTATTTTATTT+TGG - chr4_4:78780779-78780798 None:intergenic 15.0%
!! AATAAAATAATATGTTTCCT+TGG + chr4_4:78780780-78780799 Msa0705940:five_prime_UTR 15.0%
!!! TTTTTTATTCAAAGTTTGTT+TGG + chr4_4:78781311-78781330 Msa0705940:intron 15.0%
!!! AAAATTAAGTGTTTTATGTT+TGG + chr4_4:78781367-78781386 Msa0705940:intron 15.0%
!! CTGAAATTAAATATAAAGTA+TGG - chr4_4:78781862-78781881 None:intergenic 15.0%
!!! GATTTGTTATAATATATTCA+AGG - chr4_4:78783296-78783315 None:intergenic 15.0%
!!! TGAAGTGTATTTTAAATAAT+TGG - chr4_4:78783627-78783646 None:intergenic 15.0%
!!! TATTTACATTACCATTTTTA+CGG + chr4_4:78785155-78785174 Msa0705940:intron 15.0%
!!! ATCTTTGTTGATTTATTTAT+AGG - chr4_4:78786284-78786303 None:intergenic 15.0%
!! CATGATTTATGAAATGAATA+CGG + chr4_4:78781219-78781238 Msa0705940:intron 20.0%
!!! ATAATTGATTTTGACATGTT+TGG - chr4_4:78781522-78781541 None:intergenic 20.0%
!! AACACATATTCTAATAATGT+TGG - chr4_4:78782834-78782853 None:intergenic 20.0%
!! AGTAGAAAAAGAAAGAAAAA+AGG - chr4_4:78783392-78783411 None:intergenic 20.0%
!! AGATGTAATAATGTGAAATT+TGG + chr4_4:78783596-78783615 Msa0705940:intron 20.0%
!!! TGTTAATTTTCTCATCAATA+GGG + chr4_4:78784185-78784204 Msa0705940:intron 20.0%
!! CTCTTAAAGAATTATTTAGT+GGG - chr4_4:78784395-78784414 None:intergenic 20.0%
!!! AATAATTCTTTAAGAGCAAA+TGG + chr4_4:78784399-78784418 Msa0705940:intron 20.0%
!!! GAATAGATATTTTACAATGA+TGG - chr4_4:78785092-78785111 None:intergenic 20.0%
!! GTAAAAATAATTATCAGCAT+CGG - chr4_4:78785678-78785697 None:intergenic 20.0%
!! ACATATAAATTTATAGAAGG+CGG - chr4_4:78785711-78785730 None:intergenic 20.0%
!! GGTATTTAATATTTAATGAG+AGG + chr4_4:78786068-78786087 Msa0705940:intron 20.0%
!! TAAACTGTAACATCAAAAAA+AGG + chr4_4:78786153-78786172 Msa0705940:intron 20.0%
!! AAACTGTAACATCAAAAAAA+GGG + chr4_4:78786154-78786173 Msa0705940:intron 20.0%
!! TTTGAGCTTTCAAATTTAAT+CGG + chr4_4:78786392-78786411 Msa0705940:intron 20.0%
!! AAACAGATAAAAGACATTTA+CGG + chr4_4:78786587-78786606 Msa0705940:intron 20.0%
!! TTTCCAAAAAATATAGAGAA+AGG + chr4_4:78787220-78787239 Msa0705940:three_prime_UTR 20.0%
!!! ATACCTTTCTCTATATTTTT+TGG - chr4_4:78787226-78787245 None:intergenic 20.0%
!! AAAGAAAAAAAAAAATACGC+CGG - chr4_4:78787331-78787350 None:intergenic 20.0%
!! TCAAAATGGAGAAGAATTTT+TGG - chr4_4:78780955-78780974 None:intergenic 25.0%
!!! AATTGATTTTACCTCCAAAA+TGG - chr4_4:78781485-78781504 None:intergenic 25.0%
! AGAAAATCAATTCTGATTGA+GGG + chr4_4:78781688-78781707 Msa0705940:intron 25.0%
! CCATAAATTATGTGTATGTT+TGG - chr4_4:78781738-78781757 None:intergenic 25.0%
! CCAAACATACACATAATTTA+TGG + chr4_4:78781735-78781754 Msa0705940:intron 25.0%
!!! ATTTCAGTTATTTTGTCAGT+TGG + chr4_4:78781875-78781894 Msa0705940:intron 25.0%
!! ATTTGGGAATTGTAATTTTG+AGG + chr4_4:78782019-78782038 Msa0705940:CDS 25.0%
!! AAAATTTAAAGTTCCTCTGT+CGG + chr4_4:78782203-78782222 Msa0705940:CDS 25.0%
!!! AGAAGTTGATGAAAATCAAA+AGG + chr4_4:78782683-78782702 Msa0705940:CDS 25.0%
!!! GAAGTTGATGAAAATCAAAA+GGG + chr4_4:78782684-78782703 Msa0705940:CDS 25.0%
!! AAATTTTGTGATCTTAGATC+AGG + chr4_4:78783231-78783250 Msa0705940:intron 25.0%
!! TCTTAAGATATAGTCTGTTT+TGG + chr4_4:78783320-78783339 Msa0705940:intron 25.0%
! TATTTCCAAAACTTTGGTAA+TGG - chr4_4:78783575-78783594 None:intergenic 25.0%
! CATCTATATTTCCAAAACTT+TGG - chr4_4:78783581-78783600 None:intergenic 25.0%
! TGTAATAATGTGAAATTTGG+TGG + chr4_4:78783599-78783618 Msa0705940:intron 25.0%
! TTTATGCAATCAGGAATTAT+AGG - chr4_4:78783936-78783955 None:intergenic 25.0%
! ATCTTCTTAAAAACTGTTGA+CGG + chr4_4:78784038-78784057 Msa0705940:intron 25.0%
!!! TCAAGACTGTGTTTTATTAT+TGG + chr4_4:78784158-78784177 Msa0705940:intron 25.0%
!! CTGTTAATTTTCTCATCAAT+AGG + chr4_4:78784184-78784203 Msa0705940:intron 25.0%
!! ATAGGGTTTCTTTAGAAAAA+AGG + chr4_4:78784202-78784221 Msa0705940:intron 25.0%
! CATATCATACAGTATCATAA+GGG - chr4_4:78784245-78784264 None:intergenic 25.0%
! TCATATCATACAGTATCATA+AGG - chr4_4:78784246-78784265 None:intergenic 25.0%
! GCTCTTAAAGAATTATTTAG+TGG - chr4_4:78784396-78784415 None:intergenic 25.0%
!!! TGTACCATATTTTAGAGTAT+TGG + chr4_4:78784597-78784616 Msa0705940:CDS 25.0%
!!! CAAACCAATACTCTAAAATA+TGG - chr4_4:78784604-78784623 None:intergenic 25.0%
!!! TATTTTAGAGTATTGGTTTG+TGG + chr4_4:78784604-78784623 Msa0705940:CDS 25.0%
!!! GATTTAGTTTTCACTTTATG+TGG - chr4_4:78784880-78784899 None:intergenic 25.0%
!! AATTCTCATAAGTCTTATCT+AGG + chr4_4:78785449-78785468 Msa0705940:intron 25.0%
! TTGGGTATATTTATATCTGA+TGG + chr4_4:78785509-78785528 Msa0705940:intron 25.0%
! AAATTACGATATGCAAAAGA+AGG + chr4_4:78785556-78785575 Msa0705940:CDS 25.0%
! GCTTAATTGTGCTTAATATT+GGG + chr4_4:78785776-78785795 Msa0705940:CDS 25.0%
! AACTGTAACATCAAAAAAAG+GGG + chr4_4:78786155-78786174 Msa0705940:intron 25.0%
!! TTTTGAATGACAAATGTTAG+TGG + chr4_4:78786209-78786228 Msa0705940:intron 25.0%
! GTATTGAACTTTCATACTTA+CGG - chr4_4:78786446-78786465 None:intergenic 25.0%
! AAAAAATTGACAAAGACACT+TGG - chr4_4:78786480-78786499 None:intergenic 25.0%
! ATAATTATTTCAACAGACAG+AGG - chr4_4:78786511-78786530 None:intergenic 25.0%
!! TTTTCAAACGTAAATCTAAC+AGG + chr4_4:78786884-78786903 Msa0705940:intron 25.0%
!!! TTTTTGGAAATGACCAAAAA+TGG - chr4_4:78787210-78787229 None:intergenic 25.0%
! AAGAAAAAAAAAAATACGCC+GGG - chr4_4:78787330-78787349 None:intergenic 25.0%
! TACTGATATGTATATGTTCA+TGG + chr4_4:78787413-78787432 Msa0705940:three_prime_UTR 25.0%
! ACTGATATGTATATGTTCAT+GGG + chr4_4:78787414-78787433 Msa0705940:three_prime_UTR 25.0%
TAATATGTTTCCTTGGAAGA+AGG + chr4_4:78780787-78780806 Msa0705940:five_prime_UTR 30.0%
AATATGTTTCCTTGGAAGAA+GGG + chr4_4:78780788-78780807 Msa0705940:five_prime_UTR 30.0%
CGATTTGAATGAGATCAAAA+TGG - chr4_4:78780969-78780988 None:intergenic 30.0%
AAAGATGAGAGACATTGTAT+TGG - chr4_4:78781015-78781034 None:intergenic 30.0%
GTTGCAGCTATATTCAAAAA+TGG - chr4_4:78781073-78781092 None:intergenic 30.0%
AAAAAAGAAATTGTAGGGCA+CGG - chr4_4:78781135-78781154 None:intergenic 30.0%
! TTGGTTATGTGAATTGATTC+TGG + chr4_4:78781330-78781349 Msa0705940:intron 30.0%
ACGTGAATGTAGTATATGTT+TGG - chr4_4:78781584-78781603 None:intergenic 30.0%
! ACTGATTCTAACTTTAAGCT+AGG - chr4_4:78781661-78781680 None:intergenic 30.0%
GAGAAAATCAATTCTGATTG+AGG + chr4_4:78781687-78781706 Msa0705940:intron 30.0%
!! GGTTTGAATTTTGACAAGTT+TGG - chr4_4:78781717-78781736 None:intergenic 30.0%
GGGTAGGAAAAAAAATTGAA+GGG - chr4_4:78781812-78781831 None:intergenic 30.0%
AGGGTAGGAAAAAAAATTGA+AGG - chr4_4:78781813-78781832 None:intergenic 30.0%
TCTGTTATCTGTAACAATGA+TGG + chr4_4:78781924-78781943 Msa0705940:intron 30.0%
AGGTTTCTTATTGAATGATC+AGG + chr4_4:78781947-78781966 Msa0705940:intron 30.0%
!! AATGATCAGGTTGTACATTT+TGG + chr4_4:78781960-78781979 Msa0705940:intron 30.0%
!! AGTTTTGTCATGTTCGATTT+GGG + chr4_4:78782003-78782022 Msa0705940:CDS 30.0%
TTTGAATTGGATTAAAGCTG+CGG + chr4_4:78782155-78782174 Msa0705940:CDS 30.0%
!! TGGGTTGAAGATTTTACTTA+TGG + chr4_4:78782234-78782253 Msa0705940:CDS 30.0%
! GGGTTGAAGATTTTACTTAT+GGG + chr4_4:78782235-78782254 Msa0705940:CDS 30.0%
! GGTTGAAGATTTTACTTATG+GGG + chr4_4:78782236-78782255 Msa0705940:CDS 30.0%
!! TAAATTTTGAGAAGGCCATA+GGG - chr4_4:78782295-78782314 None:intergenic 30.0%
TTAGTCATATTAGACACCAT+TGG + chr4_4:78782433-78782452 Msa0705940:CDS 30.0%
TATGACATTTCACATGAATG+AGG - chr4_4:78782584-78782603 None:intergenic 30.0%
AACAATTTGACTAGAGATTC+TGG + chr4_4:78782603-78782622 Msa0705940:CDS 30.0%
! TTCTGGTGATTTTTGTGATT+TGG + chr4_4:78782620-78782639 Msa0705940:CDS 30.0%
! TCTGGTGATTTTTGTGATTT+GGG + chr4_4:78782621-78782640 Msa0705940:CDS 30.0%
CGTAACCATAATAAAAATGG+AGG + chr4_4:78782762-78782781 Msa0705940:CDS 30.0%
AACCATAATAAAAATGGAGG+TGG + chr4_4:78782765-78782784 Msa0705940:CDS 30.0%
!! AACCACCTCCATTTTTATTA+TGG - chr4_4:78782770-78782789 None:intergenic 30.0%
TAATAATGTTGGATCAGCAA+CGG - chr4_4:78782823-78782842 None:intergenic 30.0%
!! TGTATTTCTTGATTTGGCTA+GGG - chr4_4:78782947-78782966 None:intergenic 30.0%
!! AGATGTTTTAAGTGTGAGAT+TGG + chr4_4:78783173-78783192 Msa0705940:intron 30.0%
GATCTTGACTCATAATGTTA+AGG - chr4_4:78783523-78783542 None:intergenic 30.0%
! TAAATGGAAAGGGTATGAAA+TGG - chr4_4:78783550-78783569 None:intergenic 30.0%
!! AACTTTGGTAATGGACTAAA+TGG - chr4_4:78783566-78783585 None:intergenic 30.0%
! TTAGTCCATTACCAAAGTTT+TGG + chr4_4:78783567-78783586 Msa0705940:intron 30.0%
ACTCTTCAAAACTACAGTAA+TGG + chr4_4:78783649-78783668 Msa0705940:intron 30.0%
GACTCTAACATTATGTGATT+TGG + chr4_4:78783695-78783714 Msa0705940:intron 30.0%
! ATGTTTACAAGTGAGTGTTT+TGG + chr4_4:78783996-78784015 Msa0705940:intron 30.0%
AACAAAAAGGAGCTAAAACA+AGG + chr4_4:78784070-78784089 Msa0705940:intron 30.0%
TCATTTCATATCAGTCTCAA+TGG + chr4_4:78784489-78784508 Msa0705940:intron 30.0%
AGTTACTATGTTAGATCGTT+GGG + chr4_4:78784819-78784838 Msa0705940:CDS 30.0%
!! TAACACCAACCTACTTTTAT+AGG + chr4_4:78784965-78784984 Msa0705940:intron 30.0%
CAATTCCTATAAAAGTAGGT+TGG - chr4_4:78784973-78784992 None:intergenic 30.0%
!! CAACCTACTTTTATAGGAAT+TGG + chr4_4:78784971-78784990 Msa0705940:intron 30.0%
CATCCAATTCCTATAAAAGT+AGG - chr4_4:78784977-78784996 None:intergenic 30.0%
! TTTACAATGATGGAACATCA+AGG - chr4_4:78785082-78785101 None:intergenic 30.0%
! AGTTTTTACTGAATATTGCC+CGG - chr4_4:78785181-78785200 None:intergenic 30.0%
TTATCCTAAATTTCCCTCAT+TGG + chr4_4:78785230-78785249 Msa0705940:intron 30.0%
CTGTTTATCATACCTCTAAA+TGG + chr4_4:78785305-78785324 Msa0705940:intron 30.0%
TCAATAAAAAGGGGTAAAAG+AGG - chr4_4:78785410-78785429 None:intergenic 30.0%
CAGAAGTCTTCAATAAAAAG+GGG - chr4_4:78785419-78785438 None:intergenic 30.0%
CCAGAAGTCTTCAATAAAAA+GGG - chr4_4:78785420-78785439 None:intergenic 30.0%
ACCAGAAGTCTTCAATAAAA+AGG - chr4_4:78785421-78785440 None:intergenic 30.0%
!! CTTGAAAAGCTTTCACTTTT+GGG + chr4_4:78785491-78785510 Msa0705940:intron 30.0%
! TTTTTCATGAAGGATTCAGA+AGG + chr4_4:78785754-78785773 Msa0705940:intron 30.0%
GGCTTAATTGTGCTTAATAT+TGG + chr4_4:78785775-78785794 Msa0705940:CDS 30.0%
TCAAGTCTTCATAACAATAC+TGG + chr4_4:78785983-78786002 Msa0705940:intron 30.0%
TACATTTAGCTGAATTCTTG+AGG + chr4_4:78786047-78786066 Msa0705940:intron 30.0%
TGTTACAGTTTAGATCAGTT+TGG - chr4_4:78786145-78786164 None:intergenic 30.0%
TTGATTTATTTATAGGCCCT+AGG - chr4_4:78786277-78786296 None:intergenic 30.0%
GAAAGCTCAAATATACTGTA+TGG - chr4_4:78786383-78786402 None:intergenic 30.0%
TCACAAGAGGTTAATGTATT+TGG + chr4_4:78786551-78786570 Msa0705940:intron 30.0%
CACAAGAGGTTAATGTATTT+GGG + chr4_4:78786552-78786571 Msa0705940:intron 30.0%
ACTGAAGAGGTAGAAAAATA+TGG - chr4_4:78786829-78786848 None:intergenic 30.0%
!! GACAGAAGTATTATTAGAAG+CGG + chr4_4:78787038-78787057 Msa0705940:CDS 30.0%
TAAAATAGTTGCCCAACTTT+GGG + chr4_4:78787155-78787174 Msa0705940:three_prime_UTR 30.0%
CAAAAATGGTCCTATAAAAG+GGG - chr4_4:78787196-78787215 None:intergenic 30.0%
CCAAAAATGGTCCTATAAAA+GGG - chr4_4:78787197-78787216 None:intergenic 30.0%
ACCAAAAATGGTCCTATAAA+AGG - chr4_4:78787198-78787217 None:intergenic 30.0%
! TTTTCCCTCTAATCTCATTT+GGG - chr4_4:78787388-78787407 None:intergenic 30.0%
! TTTTTCCCTCTAATCTCATT+TGG - chr4_4:78787389-78787408 None:intergenic 30.0%
ATATGTTTCCTTGGAAGAAG+GGG + chr4_4:78780789-78780808 Msa0705940:five_prime_UTR 35.0%
TCATTCAAATCGATCGTGTT+AGG + chr4_4:78780977-78780996 Msa0705940:five_prime_UTR 35.0%
! GAGAGACATTGTATTGGTAT+TGG - chr4_4:78781009-78781028 None:intergenic 35.0%
GTTACAGATTCAACCTATGA+TGG - chr4_4:78781051-78781070 None:intergenic 35.0%
AGTACTGTTGCAGAATAGAA+GGG - chr4_4:78781110-78781129 None:intergenic 35.0%
! AAGTACTGTTGCAGAATAGA+AGG - chr4_4:78781111-78781130 None:intergenic 35.0%
CAATGTGCAAAAACCAAGTT+TGG + chr4_4:78781618-78781637 Msa0705940:intron 35.0%
ATTCCAGAATGGGATTTACA+AGG - chr4_4:78781773-78781792 None:intergenic 35.0%
ACAGTTGGTTATTCCAGAAT+GGG - chr4_4:78781783-78781802 None:intergenic 35.0%
ATTGAAGGGAATATGACAGT+TGG - chr4_4:78781798-78781817 None:intergenic 35.0%
AATGGACACTAGTAGTAGTA+GGG - chr4_4:78781832-78781851 None:intergenic 35.0%
AAATGGACACTAGTAGTAGT+AGG - chr4_4:78781833-78781852 None:intergenic 35.0%
ATAAAGTATGGGCAGCAAAA+TGG - chr4_4:78781850-78781869 None:intergenic 35.0%
GTTATCTGTAACAATGATGG+AGG + chr4_4:78781927-78781946 Msa0705940:intron 35.0%
!! GAGTTTTGTCATGTTCGATT+TGG + chr4_4:78782002-78782021 Msa0705940:CDS 35.0%
! GCTTCCATTGCATCTATTTT+TGG + chr4_4:78782060-78782079 Msa0705940:CDS 35.0%
CCATCCAAAAATAGATGCAA+TGG - chr4_4:78782067-78782086 None:intergenic 35.0%
!!! CCATTGCATCTATTTTTGGA+TGG + chr4_4:78782064-78782083 Msa0705940:CDS 35.0%
AAACAGAAACAACAAGTGGA+TGG - chr4_4:78782267-78782286 None:intergenic 35.0%
AGTCAAACAGAAACAACAAG+TGG - chr4_4:78782271-78782290 None:intergenic 35.0%
!! CTAAATTTTGAGAAGGCCAT+AGG - chr4_4:78782296-78782315 None:intergenic 35.0%
CTATGGCCTTCTCAAAATTT+AGG + chr4_4:78782294-78782313 Msa0705940:CDS 35.0%
!! GTTGCACCTAAATTTTGAGA+AGG - chr4_4:78782303-78782322 None:intergenic 35.0%
TTCGTCACAGTAAAAACAGA+AGG - chr4_4:78782502-78782521 None:intergenic 35.0%
! TAGGAGAGGATTTTACAAAC+GGG - chr4_4:78782536-78782555 None:intergenic 35.0%
! GTAGGAGAGGATTTTACAAA+CGG - chr4_4:78782537-78782556 None:intergenic 35.0%
TTGTAAAATCCTCTCCTACA+TGG + chr4_4:78782538-78782557 Msa0705940:CDS 35.0%
! TTTGTGATTTGGGTTCTTTG+AGG + chr4_4:78782631-78782650 Msa0705940:CDS 35.0%
TCAACTTCTTTGACACAAAG+AGG - chr4_4:78782672-78782691 None:intergenic 35.0%
! GTTGATGAAAATCAAAAGGG+TGG + chr4_4:78782687-78782706 Msa0705940:CDS 35.0%
CTTTCTAATCTGACTACGAA+CGG - chr4_4:78782739-78782758 None:intergenic 35.0%
TTCGTAGTCAGATTAGAAAG+CGG + chr4_4:78782739-78782758 Msa0705940:CDS 35.0%
CGGCGTAACCATAATAAAAA+TGG + chr4_4:78782759-78782778 Msa0705940:CDS 35.0%
ATGTGTTGAACAGTCTTAAG+CGG + chr4_4:78782847-78782866 Msa0705940:CDS 35.0%
!!! ATGCTCTACCATTTTTTGTG+GGG - chr4_4:78782902-78782921 None:intergenic 35.0%
!!! GATGCTCTACCATTTTTTGT+GGG - chr4_4:78782903-78782922 None:intergenic 35.0%
!!! TGATGCTCTACCATTTTTTG+TGG - chr4_4:78782904-78782923 None:intergenic 35.0%
! ACAAAAAATGGTAGAGCATC+AGG + chr4_4:78782903-78782922 Msa0705940:CDS 35.0%
! CAAAAAATGGTAGAGCATCA+GGG + chr4_4:78782904-78782923 Msa0705940:CDS 35.0%
!! GTATTTCTTGATTTGGCTAG+GGG - chr4_4:78782946-78782965 None:intergenic 35.0%
!! GTGTATTTCTTGATTTGGCT+AGG - chr4_4:78782948-78782967 None:intergenic 35.0%
CCAACGTGTATTTCTTGATT+TGG - chr4_4:78782953-78782972 None:intergenic 35.0%
CCAAATCAAGAAATACACGT+TGG + chr4_4:78782950-78782969 Msa0705940:CDS 35.0%
!! TTGATTTGCCAAAAGATGCT+AGG + chr4_4:78782973-78782992 Msa0705940:CDS 35.0%
! GTATTGATGAAGACCAAAAG+TGG - chr4_4:78782999-78783018 None:intergenic 35.0%
TTCAATCTTCTGTGAAGAGA+AGG - chr4_4:78783044-78783063 None:intergenic 35.0%
TATGCTACTAAATCCTGTTC+AGG + chr4_4:78783064-78783083 Msa0705940:CDS 35.0%
AATCAAGTAATCACCTGAAC+AGG - chr4_4:78783080-78783099 None:intergenic 35.0%
CATGCATTCTATTGAAGTAG+TGG + chr4_4:78783112-78783131 Msa0705940:intron 35.0%
! GAGATTGGTTCCTATGATTT+AGG + chr4_4:78783188-78783207 Msa0705940:intron 35.0%
CAAGCAAACTCCTAAATCAT+AGG - chr4_4:78783201-78783220 None:intergenic 35.0%
ACGAAGGATAGATTAAAGGT+TGG - chr4_4:78783269-78783288 None:intergenic 35.0%
CAGTACGAAGGATAGATTAA+AGG - chr4_4:78783273-78783292 None:intergenic 35.0%
ATATATTCAAGGCAGTACGA+AGG - chr4_4:78783285-78783304 None:intergenic 35.0%
!! AGATATAGTCTGTTTTGGAC+AGG + chr4_4:78783325-78783344 Msa0705940:intron 35.0%
TCATAATGTTAAGGCCAACA+GGG - chr4_4:78783514-78783533 None:intergenic 35.0%
!! GGTAATGGACTAAATGGAAA+GGG - chr4_4:78783560-78783579 None:intergenic 35.0%
!! TGGTAATGGACTAAATGGAA+AGG - chr4_4:78783561-78783580 None:intergenic 35.0%
! TCAAAACTACAGTAATGGAG+AGG + chr4_4:78783654-78783673 Msa0705940:intron 35.0%
! CATTATGTGATTTGGATGAC+TGG + chr4_4:78783703-78783722 Msa0705940:intron 35.0%
! TTCCTGTTCTTTTCTTTGAG+AGG + chr4_4:78783782-78783801 Msa0705940:intron 35.0%
!! TCCTGTTCTTTTCTTTGAGA+GGG + chr4_4:78783783-78783802 Msa0705940:intron 35.0%
TCCTGATTGCATAAACTTGT+TGG + chr4_4:78783941-78783960 Msa0705940:intron 35.0%
! CCTGATTGCATAAACTTGTT+GGG + chr4_4:78783942-78783961 Msa0705940:intron 35.0%
ACGGTGAAAAGTCAACAAAA+AGG + chr4_4:78784057-78784076 Msa0705940:intron 35.0%
!! GAGCAAATGGTTGATGAAAA+TGG + chr4_4:78784412-78784431 Msa0705940:intron 35.0%
TTTGTATTGAGTGCTTCTCA+AGG + chr4_4:78784544-78784563 Msa0705940:CDS 35.0%
!! TTTAGAGTATTGGTTTGTGG+CGG + chr4_4:78784607-78784626 Msa0705940:CDS 35.0%
! TGTGTTTTTCTATAGCATCG+AGG - chr4_4:78784654-78784673 None:intergenic 35.0%
ATTTGTCCAGGGTTATGAAT+TGG + chr4_4:78784725-78784744 Msa0705940:CDS 35.0%
TTTGTCCAGGGTTATGAATT+GGG + chr4_4:78784726-78784745 Msa0705940:CDS 35.0%
CAGTTACTATGTTAGATCGT+TGG + chr4_4:78784818-78784837 Msa0705940:CDS 35.0%
AAATCCATGATGAACTACCT+AGG + chr4_4:78784895-78784914 Msa0705940:CDS 35.0%
! TTTGTTTCAGTGAAGTACCT+AGG - chr4_4:78784915-78784934 None:intergenic 35.0%
AGAAAACAAGAGAATTGACG+TGG - chr4_4:78785123-78785142 None:intergenic 35.0%
!! TACATTACCATTTTTACGGC+CGG + chr4_4:78785159-78785178 Msa0705940:intron 35.0%
! TTAGGATAAGTCTGAGCTTT+TGG - chr4_4:78785219-78785238 None:intergenic 35.0%
AATGCCAATGAGGGAAATTT+AGG - chr4_4:78785237-78785256 None:intergenic 35.0%
AAATTTCCCTCATTGGCATT+AGG + chr4_4:78785237-78785256 Msa0705940:intron 35.0%
AATTTCCCTCATTGGCATTA+GGG + chr4_4:78785238-78785257 Msa0705940:intron 35.0%
GGTATGATAAACAGCATAAG+AGG - chr4_4:78785299-78785318 None:intergenic 35.0%
! CCCTTTTTATTGAAGACTTC+TGG + chr4_4:78785417-78785436 Msa0705940:intron 35.0%
! GCTTGAAAAGCTTTCACTTT+TGG + chr4_4:78785490-78785509 Msa0705940:intron 35.0%
CTTAATATTGGGAGCTACAT+GGG + chr4_4:78785787-78785806 Msa0705940:CDS 35.0%
!! TTAATTTGTCCTCCTTTGTC+CGG + chr4_4:78786244-78786263 Msa0705940:intron 35.0%
GTTGTTAAAGCTATCACAAG+AGG + chr4_4:78786538-78786557 Msa0705940:intron 35.0%
!! TAATGTTTGATTTGCCCTGT+AGG + chr4_4:78786625-78786644 Msa0705940:intron 35.0%
CTTTCCCAGTTCAAATAGAT+GGG + chr4_4:78786711-78786730 Msa0705940:CDS 35.0%
TTTCCCAGTTCAAATAGATG+GGG + chr4_4:78786712-78786731 Msa0705940:CDS 35.0%
TACATAGAGTTAACTCATCG+TGG + chr4_4:78786758-78786777 Msa0705940:CDS 35.0%
TACCTCTTCAGTTATGTGTA+CGG + chr4_4:78786837-78786856 Msa0705940:intron 35.0%
AAAGCTCCTAAGATTCCTAA+CGG - chr4_4:78786867-78786886 None:intergenic 35.0%
GCAAATTTCGCTCTTATATG+TGG + chr4_4:78786920-78786939 Msa0705940:intron 35.0%
ACCTGAGTATAGCAAATAAG+AGG - chr4_4:78786961-78786980 None:intergenic 35.0%
ATACTCAGGTATTCATGTTG+AGG + chr4_4:78786971-78786990 Msa0705940:intron 35.0%
ATTATTAGAAGCGGAATGCA+AGG + chr4_4:78787047-78787066 Msa0705940:CDS 35.0%
TTATTAGAAGCGGAATGCAA+GGG + chr4_4:78787048-78787067 Msa0705940:CDS 35.0%
TCAGAGAAAAGTTCTTCTCA+AGG + chr4_4:78787086-78787105 Msa0705940:CDS 35.0%
CGGATCTTAAGAAAGATTGA+TGG - chr4_4:78787118-78787137 None:intergenic 35.0%
!! AGTTGGGCAACTATTTTAGA+AGG - chr4_4:78787153-78787172 None:intergenic 35.0%
CTAAAATAGTTGCCCAACTT+TGG + chr4_4:78787154-78787173 Msa0705940:three_prime_UTR 35.0%
! CCCTTTTATAGGACCATTTT+TGG + chr4_4:78787194-78787213 Msa0705940:three_prime_UTR 35.0%
! ATCTTACATTAGCTGCTTTG+TGG - chr4_4:78787261-78787280 None:intergenic 35.0%
AACACCCAAATGAGATTAGA+GGG + chr4_4:78787381-78787400 Msa0705940:three_prime_UTR 35.0%
ATGTATATGTTCATGGGTCT+TGG + chr4_4:78787420-78787439 Msa0705940:three_prime_UTR 35.0%
AAGTTAACAAACAGCTTCCA+AGG + chr4_4:78787482-78787501 Msa0705940:three_prime_UTR 35.0%
! ACGAGAGAGGAATTTTGGAT+TGG - chr4_4:78780854-78780873 None:intergenic 40.0%
CTCTAGATTCCATCCATCAT+AGG + chr4_4:78781035-78781054 Msa0705940:intron 40.0%
! CAGATTCAACCTATGATGGA+TGG - chr4_4:78781047-78781066 None:intergenic 40.0%
! TACAGTTCCTAGCTTGTAGT+AGG + chr4_4:78781457-78781476 Msa0705940:intron 40.0%
AATGGATCCTACTACAAGCT+AGG - chr4_4:78781467-78781486 None:intergenic 40.0%
! GCTTGTAGTAGGATCCATTT+TGG + chr4_4:78781468-78781487 Msa0705940:intron 40.0%
! TGTAGTAGGATCCATTTTGG+AGG + chr4_4:78781471-78781490 Msa0705940:intron 40.0%
!! GTAGCTTTTGACTCCAAACT+TGG - chr4_4:78781634-78781653 None:intergenic 40.0%
GACAGTTGGTTATTCCAGAA+TGG - chr4_4:78781784-78781803 None:intergenic 40.0%
!! TAGATGCAATGGAAGCATCA+GGG - chr4_4:78782056-78782075 None:intergenic 40.0%
!! ATAGATGCAATGGAAGCATC+AGG - chr4_4:78782057-78782076 None:intergenic 40.0%
!! ATTTTTGGATGGCTGATCAC+TGG + chr4_4:78782075-78782094 Msa0705940:CDS 40.0%
CTTGAGAACAGCGTATATGA+CGG - chr4_4:78782118-78782137 None:intergenic 40.0%
TCATATACGCTGTTCTCAAG+TGG + chr4_4:78782118-78782137 Msa0705940:CDS 40.0%
! CCAAACTTTCTTCTTTTCCC+TGG - chr4_4:78782181-78782200 None:intergenic 40.0%
CCAGGGAAAAGAAGAAAGTT+TGG + chr4_4:78782178-78782197 Msa0705940:CDS 40.0%
! GTTTCTGTTTGACTTCCCTA+TGG + chr4_4:78782277-78782296 Msa0705940:CDS 40.0%
TTACAGTCCTTTGCTGCATA+CGG - chr4_4:78782393-78782412 None:intergenic 40.0%
AGCAAAGGACTGTAAATGTG+TGG + chr4_4:78782398-78782417 Msa0705940:CDS 40.0%
ACACCATTGGTCAGAAAGAT+GGG + chr4_4:78782446-78782465 Msa0705940:CDS 40.0%
TAACCCATCTTTCTGACCAA+TGG - chr4_4:78782452-78782471 None:intergenic 40.0%
!! GTCAGAAAGATGGGTTAATG+TGG + chr4_4:78782455-78782474 Msa0705940:CDS 40.0%
CAAAGAGGAGAGAGGATAAT+TGG - chr4_4:78782657-78782676 None:intergenic 40.0%
CATACTAATGGTAAGTCACG+AGG + chr4_4:78782792-78782811 Msa0705940:CDS 40.0%
CTCTTTGACCCCACAAAAAA+TGG + chr4_4:78782891-78782910 Msa0705940:CDS 40.0%
! AAAAGTGGCCTAGCATCTTT+TGG - chr4_4:78782984-78783003 None:intergenic 40.0%
!! AAAAGATGCTAGGCCACTTT+TGG + chr4_4:78782983-78783002 Msa0705940:CDS 40.0%
GTCTTCATCAATACCAGAAG+TGG + chr4_4:78783005-78783024 Msa0705940:CDS 40.0%
TTCATCAATACCAGAAGTGG+TGG + chr4_4:78783008-78783027 Msa0705940:CDS 40.0%
TCATCAATACCAGAAGTGGT+GGG + chr4_4:78783009-78783028 Msa0705940:CDS 40.0%
CTCATAATGTTAAGGCCAAC+AGG - chr4_4:78783515-78783534 None:intergenic 40.0%
TCCCTCTCAAAGAAAAGAAC+AGG - chr4_4:78783787-78783806 None:intergenic 40.0%
CCCAACAAGTTTATGCAATC+AGG - chr4_4:78783945-78783964 None:intergenic 40.0%
CGGCTACATGGATCAAATTA+CGG + chr4_4:78784334-78784353 Msa0705940:intron 40.0%
! TCAATGGACATGTTCTGGTT+TGG + chr4_4:78784505-78784524 Msa0705940:intron 40.0%
!!! CTGGTTTGGCATTTTACTGT+AGG + chr4_4:78784519-78784538 Msa0705940:intron 40.0%
!! TTAGAGTATTGGTTTGTGGC+GGG + chr4_4:78784608-78784627 Msa0705940:CDS 40.0%
TTGTCCAGGGTTATGAATTG+GGG + chr4_4:78784727-78784746 Msa0705940:CDS 40.0%
GCTAATGTCATGCAAAAGCA+TGG - chr4_4:78784791-78784810 None:intergenic 40.0%
AGTACCTAGGTAGTTCATCA+TGG - chr4_4:78784902-78784921 None:intergenic 40.0%
AGGAATTGGATGTGATGCAA+AGG + chr4_4:78784985-78785004 Msa0705940:intron 40.0%
TCCTGAAAAGTTTAGTAGCC+AGG + chr4_4:78785042-78785061 Msa0705940:CDS 40.0%
! ACCTGGCTACTAAACTTTTC+AGG - chr4_4:78785046-78785065 None:intergenic 40.0%
! CAATGATGGAACATCAAGGA+GGG - chr4_4:78785078-78785097 None:intergenic 40.0%
! ACAATGATGGAACATCAAGG+AGG - chr4_4:78785079-78785098 None:intergenic 40.0%
!! ACATTACCATTTTTACGGCC+GGG + chr4_4:78785160-78785179 Msa0705940:intron 40.0%
CATACCTCTAAATGGAAACC+AGG + chr4_4:78785313-78785332 Msa0705940:intron 40.0%
ATCATCACTATGATCTCTCC+TGG - chr4_4:78785334-78785353 None:intergenic 40.0%
! GAGATCATAGTGATGATGAG+TGG + chr4_4:78785337-78785356 Msa0705940:intron 40.0%
AGAAGGAGCAAGAGACATTA+TGG + chr4_4:78785573-78785592 Msa0705940:CDS 40.0%
AAGAGACATTGAGATTCCCA+AGG + chr4_4:78785645-78785664 Msa0705940:CDS 40.0%
!! CAGCATCGGTAATTAACCTT+GGG - chr4_4:78785664-78785683 None:intergenic 40.0%
!! TCAGCATCGGTAATTAACCT+TGG - chr4_4:78785665-78785684 None:intergenic 40.0%
GCTTAATATTGGGAGCTACA+TGG + chr4_4:78785786-78785805 Msa0705940:CDS 40.0%
CTTGAGGTAGTATGTGTTTG+TGG + chr4_4:78785886-78785905 Msa0705940:CDS 40.0%
TAGTATGTGTTTGTGGAGCA+TGG + chr4_4:78785893-78785912 Msa0705940:CDS 40.0%
! TAATTTGTCCTCCTTTGTCC+GGG + chr4_4:78786245-78786264 Msa0705940:intron 40.0%
TTGTGAAAGTCCAACCTACA+GGG - chr4_4:78786642-78786661 None:intergenic 40.0%
TTGGACTTTCACAAGCAAGA+AGG + chr4_4:78786648-78786667 Msa0705940:CDS 40.0%
TATTTGAACTGGGAAAGGAC+TGG - chr4_4:78786708-78786727 None:intergenic 40.0%
CCATCTATTTGAACTGGGAA+AGG - chr4_4:78786713-78786732 None:intergenic 40.0%
CCTTTCCCAGTTCAAATAGA+TGG + chr4_4:78786710-78786729 Msa0705940:CDS 40.0%
GTTCCCCATCTATTTGAACT+GGG - chr4_4:78786718-78786737 None:intergenic 40.0%
GAACCATTTATCCTACAACC+AGG + chr4_4:78786734-78786753 Msa0705940:CDS 40.0%
TAGCCTGGTTGTAGGATAAA+TGG - chr4_4:78786740-78786759 None:intergenic 40.0%
TGAGTTAACTCTATGTAGCC+TGG - chr4_4:78786755-78786774 None:intergenic 40.0%
ATCCGTACACATAACTGAAG+AGG - chr4_4:78786842-78786861 None:intergenic 40.0%
AAGCTCCTAAGATTCCTAAC+GGG - chr4_4:78786866-78786885 None:intergenic 40.0%
!! GCCTCTTATTTGCTATACTC+AGG + chr4_4:78786957-78786976 Msa0705940:intron 40.0%
ACTTCAGAAGATGAGCCTAA+AGG + chr4_4:78786997-78787016 Msa0705940:CDS 40.0%
GTTGCAATATACACAGCCTA+GGG - chr4_4:78787308-78787327 None:intergenic 40.0%
CTCTAATCTCATTTGGGTGT+TGG - chr4_4:78787382-78787401 None:intergenic 40.0%
CAACACCCAAATGAGATTAG+AGG + chr4_4:78787380-78787399 Msa0705940:three_prime_UTR 40.0%
TTGTATACGTAGTGTGTGTG+TGG + chr4_4:78787447-78787466 Msa0705940:three_prime_UTR 40.0%
! CGAGAACGAGAGAGGAATTT+TGG - chr4_4:78780859-78780878 None:intergenic 45.0%
! TGATTAGCTAGCTAGCTCAG+AGG + chr4_4:78781280-78781299 Msa0705940:intron 45.0%
! GATTAGCTAGCTAGCTCAGA+GGG + chr4_4:78781281-78781300 Msa0705940:intron 45.0%
! CAGCCTTGTAAATCCCATTC+TGG + chr4_4:78781767-78781786 Msa0705940:intron 45.0%
GACACTAGTAGTAGTAGGGT+AGG - chr4_4:78781828-78781847 None:intergenic 45.0%
TGGCTGATCACTGGATCATT+TGG + chr4_4:78782084-78782103 Msa0705940:CDS 45.0%
TTCCTCTGTCGGATCATTTG+TGG + chr4_4:78782214-78782233 Msa0705940:CDS 45.0%
TCCTCTGTCGGATCATTTGT+GGG + chr4_4:78782215-78782234 Msa0705940:CDS 45.0%
TTGCTGCATACGGAGAACAA+AGG - chr4_4:78782383-78782402 None:intergenic 45.0%
TTGTTCTCCGTATGCAGCAA+AGG + chr4_4:78782383-78782402 Msa0705940:CDS 45.0%
GACACCATTGGTCAGAAAGA+TGG + chr4_4:78782445-78782464 Msa0705940:CDS 45.0%
! TTTTACTGTGACGAAGCGTG+TGG + chr4_4:78782507-78782526 Msa0705940:CDS 45.0%
CTTTGACACAAAGAGGAGAG+AGG - chr4_4:78782665-78782684 None:intergenic 45.0%
AATCTGACTACGAACGGAAG+AGG - chr4_4:78782733-78782752 None:intergenic 45.0%
GGAGGTGGTTGTCATACTAA+TGG + chr4_4:78782780-78782799 Msa0705940:CDS 45.0%
AAGCGGAACAAGTACAACGA+TGG + chr4_4:78782864-78782883 Msa0705940:CDS 45.0%
AGCGGAACAAGTACAACGAT+GGG + chr4_4:78782865-78782884 Msa0705940:CDS 45.0%
! AATGGTAGAGCATCAGGGAA+TGG + chr4_4:78782909-78782928 Msa0705940:CDS 45.0%
! GGAAAGGGTATGAAATGGAG+AGG - chr4_4:78783545-78783564 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_4:78784309-78784328 Msa0705940:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_4:78784310-78784329 Msa0705940:intron 45.0%
CAGTCTCAATGGACATGTTC+TGG + chr4_4:78784500-78784519 Msa0705940:intron 45.0%
AACAATTCCAGACCTACCTC+AGG - chr4_4:78784571-78784590 None:intergenic 45.0%
!! TAGAGTATTGGTTTGTGGCG+GGG + chr4_4:78784609-78784628 Msa0705940:CDS 45.0%
GGAATAATTGCAACAGGTGG+AGG - chr4_4:78784688-78784707 None:intergenic 45.0%
AGGGGAATAATTGCAACAGG+TGG - chr4_4:78784691-78784710 None:intergenic 45.0%
CCTAGGGGAATAATTGCAAC+AGG - chr4_4:78784694-78784713 None:intergenic 45.0%
CCTGTTGCAATTATTCCCCT+AGG + chr4_4:78784691-78784710 Msa0705940:CDS 45.0%
CTTGCAGAAGAAGACTCTGA+AGG + chr4_4:78784850-78784869 Msa0705940:CDS 45.0%
AAGGAGGGAGAATATGTACC+TGG - chr4_4:78785063-78785082 None:intergenic 45.0%
ATATTGCCCGGCCGTAAAAA+TGG - chr4_4:78785169-78785188 None:intergenic 45.0%
TAGCACCCTAATGCCAATGA+GGG - chr4_4:78785246-78785265 None:intergenic 45.0%
TTAGCACCCTAATGCCAATG+AGG - chr4_4:78785247-78785266 None:intergenic 45.0%
CTCTCCTGGTTTCCATTTAG+AGG - chr4_4:78785320-78785339 None:intergenic 45.0%
AGTGGCTAGCAATGTCACTA+TGG + chr4_4:78785355-78785374 Msa0705940:intron 45.0%
ACTTCAAGCCATACTTGCCA+TGG - chr4_4:78785619-78785638 None:intergenic 45.0%
ATGGCAAGTATGGCTTGAAG+TGG + chr4_4:78785618-78785637 Msa0705940:CDS 45.0%
CAAGTATGGCTTGAAGTGGA+CGG + chr4_4:78785622-78785641 Msa0705940:CDS 45.0%
AATATTGGGAGCTACATGGG+TGG + chr4_4:78785790-78785809 Msa0705940:CDS 45.0%
ACATGGGTGGAGTAGATCTT+TGG + chr4_4:78785803-78785822 Msa0705940:CDS 45.0%
CTCAAGCATCTTGTCATGCA+TGG - chr4_4:78785872-78785891 None:intergenic 45.0%
CATGCATGACAAGATGCTTG+AGG + chr4_4:78785870-78785889 Msa0705940:CDS 45.0%
TTTGTCCGGGTTTGAACCTA+GGG + chr4_4:78786258-78786277 Msa0705940:intron 45.0%
!! GTTTGATTTGCCCTGTAGGT+TGG + chr4_4:78786629-78786648 Msa0705940:intron 45.0%
CTTGTGAAAGTCCAACCTAC+AGG - chr4_4:78786643-78786662 None:intergenic 45.0%
GGTTCCCCATCTATTTGAAC+TGG - chr4_4:78786719-78786738 None:intergenic 45.0%
ACTCTATGTAGCCTGGTTGT+AGG - chr4_4:78786748-78786767 None:intergenic 45.0%
AGAGTTAACTCATCGTGGAC+AGG + chr4_4:78786763-78786782 Msa0705940:CDS 45.0%
TATGTGTACGGATTCCCGTT+AGG + chr4_4:78786849-78786868 Msa0705940:intron 45.0%
GGATTCCCGTTAGGAATCTT+AGG + chr4_4:78786858-78786877 Msa0705940:intron 45.0%
CTCAGGTATTCATGTTGAGG+AGG + chr4_4:78786974-78786993 Msa0705940:intron 45.0%
ATAGCAGCTGCTTGTCCTTT+AGG - chr4_4:78787015-78787034 None:intergenic 45.0%
TTAGAAGGCTGAACGAGAAG+CGG - chr4_4:78787138-78787157 None:intergenic 45.0%
GAGCGCAAAAACCCAAAGTT+GGG - chr4_4:78787169-78787188 None:intergenic 45.0%
ATGGTCCTATAAAAGGGGTC+TGG - chr4_4:78787191-78787210 None:intergenic 45.0%
! TTAGCTGCTTTGTGGAAGTG+TGG - chr4_4:78787253-78787272 None:intergenic 45.0%
GGTTGCAATATACACAGCCT+AGG - chr4_4:78787309-78787328 None:intergenic 45.0%
AGGCTGTGTATATTGCAACC+CGG + chr4_4:78787309-78787328 Msa0705940:three_prime_UTR 45.0%
!! TAAATAATAATAATAATAGT+TGG + chr4_4:78780744-78780763 Msa0705940:five_prime_UTR 5.0%
GTTTCCTTGGAAGAAGGGGA+AGG + chr4_4:78780793-78780812 Msa0705940:five_prime_UTR 50.0%
CTTGGAAGAAGGGGAAGGAA+GGG + chr4_4:78780798-78780817 Msa0705940:five_prime_UTR 50.0%
TTGGAAGAAGGGGAAGGAAG+GGG + chr4_4:78780799-78780818 Msa0705940:five_prime_UTR 50.0%
AGCGACGAGCGTCTTTGAAT+TGG + chr4_4:78782142-78782161 Msa0705940:CDS 50.0%
ATTGGATTAAAGCTGCGGCC+AGG + chr4_4:78782160-78782179 Msa0705940:CDS 50.0%
TTGGATTAAAGCTGCGGCCA+GGG + chr4_4:78782161-78782180 Msa0705940:CDS 50.0%
ACCCACAAATGATCCGACAG+AGG - chr4_4:78782219-78782238 None:intergenic 50.0%
ACAAACCGAGCAACGATGGA+GGG - chr4_4:78782343-78782362 None:intergenic 50.0%
GGACTGTAAATGTGTGGCTC+AGG + chr4_4:78782404-78782423 Msa0705940:CDS 50.0%
TGTAAATGTGTGGCTCAGGC+TGG + chr4_4:78782408-78782427 Msa0705940:CDS 50.0%
GTAAATGTGTGGCTCAGGCT+GGG + chr4_4:78782409-78782428 Msa0705940:CDS 50.0%
ACGACAATGCCATGTAGGAG+AGG - chr4_4:78782550-78782569 None:intergenic 50.0%
CTCCTACATGGCATTGTCGT+TGG + chr4_4:78782550-78782569 Msa0705940:CDS 50.0%
CACCAACGACAATGCCATGT+AGG - chr4_4:78782555-78782574 None:intergenic 50.0%
TTGTTCAGACTGTGCCCTGT+TGG + chr4_4:78783497-78783516 Msa0705940:intron 50.0%
TTCTCCTGACAATGACCCTG+TGG + chr4_4:78783897-78783916 Msa0705940:intron 50.0%
ATAGCCACAGGGTCATTGTC+AGG - chr4_4:78783904-78783923 None:intergenic 50.0%
GGACTCAAGACATAGCCACA+GGG - chr4_4:78783915-78783934 None:intergenic 50.0%
AGGACTCAAGACATAGCCAC+AGG - chr4_4:78783916-78783935 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_4:78784311-78784330 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_4:78784308-78784327 Msa0705940:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr4_4:78784314-78784333 Msa0705940:intron 50.0%
TCCAGGGTTATGAATTGGGG+AGG + chr4_4:78784730-78784749 Msa0705940:CDS 50.0%
TCCTCCCCAATTCATAACCC+TGG - chr4_4:78784734-78784753 None:intergenic 50.0%
AGGGTTATGAATTGGGGAGG+AGG + chr4_4:78784733-78784752 Msa0705940:CDS 50.0%
TTCTCTGCACTGGATGGACA+GGG + chr4_4:78784757-78784776 Msa0705940:CDS 50.0%
!! GAACTTGTGCTGACTTGCCA+TGG + chr4_4:78785599-78785618 Msa0705940:CDS 50.0%
! CTGACTTGCCATGGCAAGTA+TGG + chr4_4:78785608-78785627 Msa0705940:CDS 50.0%
CCTATACCTGAAGTTTCCCC+AGG - chr4_4:78785921-78785940 None:intergenic 50.0%
CCTGGGGAAACTTCAGGTAT+AGG + chr4_4:78785918-78785937 Msa0705940:intron 50.0%
CTAGGTTCAAACCCGGACAA+AGG - chr4_4:78786259-78786278 None:intergenic 50.0%
CTTTGTCCGGGTTTGAACCT+AGG + chr4_4:78786257-78786276 Msa0705940:intron 50.0%
ATAGGCCCTAGGTTCAAACC+CGG - chr4_4:78786266-78786285 None:intergenic 50.0%
! CAAGCAAGAAGGCTAGCTCA+AGG + chr4_4:78786659-78786678 Msa0705940:CDS 50.0%
GGAGCGCAAAAACCCAAAGT+TGG - chr4_4:78787170-78787189 None:intergenic 50.0%
ACTGTTGCGTCTAACACCCT+AGG + chr4_4:78787289-78787308 Msa0705940:three_prime_UTR 50.0%
CCTTCCTTCCCCTTCTTCCA+AGG - chr4_4:78780800-78780819 None:intergenic 55.0%
CCTTGGAAGAAGGGGAAGGA+AGG + chr4_4:78780797-78780816 Msa0705940:five_prime_UTR 55.0%
GGGAAGGAAGGGGTTGTAAC+AGG + chr4_4:78780809-78780828 Msa0705940:five_prime_UTR 55.0%
CTGAAGAGCGAGAACGAGAG+AGG - chr4_4:78780867-78780886 None:intergenic 55.0%
CTCTCTCGTTCTCGCTCTTC+AGG + chr4_4:78780865-78780884 Msa0705940:five_prime_UTR 55.0%
TAGCTAGCTAGCTCAGAGGG+TGG + chr4_4:78781284-78781303 Msa0705940:intron 55.0%
TACTCCCCTCCATCGTTGCT+CGG + chr4_4:78782335-78782354 Msa0705940:CDS 55.0%
CAAACCGAGCAACGATGGAG+GGG - chr4_4:78782342-78782361 None:intergenic 55.0%
CACAAACCGAGCAACGATGG+AGG - chr4_4:78782344-78782363 None:intergenic 55.0%
! CTCCATCGTTGCTCGGTTTG+TGG + chr4_4:78782342-78782361 Msa0705940:CDS 55.0%
CACCACAAACCGAGCAACGA+TGG - chr4_4:78782347-78782366 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr4_4:78784316-78784335 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr4_4:78784322-78784341 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4_4:78784323-78784342 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4_4:78784322-78784341 Msa0705940:intron 55.0%
GAGTGCTTCTCAAGGTCCTG+AGG + chr4_4:78784552-78784571 Msa0705940:CDS 55.0%
GCTTCTCAAGGTCCTGAGGT+AGG + chr4_4:78784556-78784575 Msa0705940:CDS 55.0%
TCAAGGTCCTGAGGTAGGTC+TGG + chr4_4:78784561-78784580 Msa0705940:CDS 55.0%
!! GTATTGGTTTGTGGCGGGGA+TGG + chr4_4:78784613-78784632 Msa0705940:CDS 55.0%
CTTCTCTGCACTGGATGGAC+AGG + chr4_4:78784756-78784775 Msa0705940:CDS 55.0%
TGTTTGTGGAGCATGGCACC+TGG + chr4_4:78785900-78785919 Msa0705940:CDS 55.0%
GTTTGTGGAGCATGGCACCT+GGG + chr4_4:78785901-78785920 Msa0705940:CDS 55.0%
TTTGTGGAGCATGGCACCTG+GGG + chr4_4:78785902-78785921 Msa0705940:CDS 55.0%
ATGGCACCTGGGGAAACTTC+AGG + chr4_4:78785912-78785931 Msa0705940:CDS 55.0%
GGTTCAAACCCGGACAAAGG+AGG - chr4_4:78786256-78786275 None:intergenic 55.0%
! GCGCTCCAGACCCCTTTTAT+AGG + chr4_4:78787183-78787202 Msa0705940:three_prime_UTR 55.0%
! ATGGAGGGGAGTACGTGGTG+AGG - chr4_4:78782328-78782347 None:intergenic 60.0%
! CAACGATGGAGGGGAGTACG+TGG - chr4_4:78782333-78782352 None:intergenic 60.0%
!! ACCAGAAGTGGTGGGCAGCT+TGG + chr4_4:78783017-78783036 Msa0705940:CDS 60.0%
!! CCAGAAGTGGTGGGCAGCTT+GGG + chr4_4:78783018-78783037 Msa0705940:CDS 60.0%
CGGGGATGGCACTGTTGCAT+GGG + chr4_4:78784627-78784646 Msa0705940:CDS 60.0%
GGAGGCTTCTCTGCACTGGA+TGG + chr4_4:78784751-78784770 Msa0705940:CDS 60.0%
TCTGCACTGGATGGACAGGG+CGG + chr4_4:78784760-78784779 Msa0705940:CDS 60.0%
CCCAAGCTGCCCACCACTTC+TGG - chr4_4:78783021-78783040 None:intergenic 65.0%
GCGGGGATGGCACTGTTGCA+TGG + chr4_4:78784626-78784645 Msa0705940:CDS 65.0%
GGGAGGAGGCTTCTCTGCAC+TGG + chr4_4:78784747-78784766 Msa0705940:CDS 65.0%
CTGCACTGGATGGACAGGGC+GGG + chr4_4:78784761-78784780 Msa0705940:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 78780717 78787517 78780717 ID=Msa0705940;Name=Msa0705940
chr4_4 mRNA 78780717 78787517 78780717 ID=Msa0705940-mRNA-1;Parent=Msa0705940;Name=Msa0705940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=313|1|1|1|0.85|0.75|8|386|705
chr4_4 exon 78780717 78780998 78780717 ID=Msa0705940-mRNA-1:exon:25172;Parent=Msa0705940-mRNA-1
chr4_4 exon 78781969 78783085 78781969 ID=Msa0705940-mRNA-1:exon:25173;Parent=Msa0705940-mRNA-1
chr4_4 exon 78784541 78784916 78784541 ID=Msa0705940-mRNA-1:exon:25174;Parent=Msa0705940-mRNA-1
chr4_4 exon 78784987 78785063 78784987 ID=Msa0705940-mRNA-1:exon:25175;Parent=Msa0705940-mRNA-1
chr4_4 exon 78785547 78785666 78785547 ID=Msa0705940-mRNA-1:exon:25176;Parent=Msa0705940-mRNA-1
chr4_4 exon 78785766 78785933 78785766 ID=Msa0705940-mRNA-1:exon:25177;Parent=Msa0705940-mRNA-1
chr4_4 exon 78786647 78786784 78786647 ID=Msa0705940-mRNA-1:exon:25178;Parent=Msa0705940-mRNA-1
chr4_4 exon 78786979 78787517 78786979 ID=Msa0705940-mRNA-1:exon:25179;Parent=Msa0705940-mRNA-1
chr4_4 five_prime_UTR 78780717 78780998 78780717 ID=Msa0705940-mRNA-1:five_prime_utr;Parent=Msa0705940-mRNA-1
chr4_4 five_prime_UTR 78781969 78781999 78781969 ID=Msa0705940-mRNA-1:five_prime_utr;Parent=Msa0705940-mRNA-1
chr4_4 CDS 78782000 78783085 78782000 ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4 CDS 78784541 78784916 78784541 ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4 CDS 78784987 78785063 78784987 ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4 CDS 78785547 78785666 78785547 ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4 CDS 78785766 78785933 78785766 ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4 CDS 78786647 78786784 78786647 ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4 CDS 78786979 78787131 78786979 ID=Msa0705940-mRNA-1:cds;Parent=Msa0705940-mRNA-1
chr4_4 three_prime_UTR 78787132 78787517 78787132 ID=Msa0705940-mRNA-1:three_prime_utr;Parent=Msa0705940-mRNA-1
Gene Sequence

>Msa0705940

ATGAGTTTTGTCATGTTCGATTTGGGAATTGTAATTTTGAGGTTTCTTACAAGCCCTGATGCTTCCATTGCATCTATTTTTGGATGGCTGATCACTGGATCATTTGGACTTGTAGCCGTCATATACGCTGTTCTCAAGTGGCAGCGACGAGCGTCTTTGAATTGGATTAAAGCTGCGGCCAGGGAAAAGAAGAAAGTTTGGAAAAAATTTAAAGTTCCTCTGTCGGATCATTTGTGGGTTGAAGATTTTACTTATGGGGAACAACCATCCACTTGTTGTTTCTGTTTGACTTCCCTATGGCCTTCTCAAAATTTAGGTGCAACAGCCTCACCACGTACTCCCCTCCATCGTTGCTCGGTTTGTGGTGTCGCAGCTCATTTCCTTTGTTCTCCGTATGCAGCAAAGGACTGTAAATGTGTGGCTCAGGCTGGGTTTAGTCATATTAGACACCATTGGTCAGAAAGATGGGTTAATGTGGATGATCATCATGAGATGTCTGCCTTCTGTTTTTACTGTGACGAAGCGTGTGGTGTCCCGTTTGTAAAATCCTCTCCTACATGGCATTGTCGTTGGTGTCAGCGCCTCATTCATGTGAAATGTCATAACAATTTGACTAGAGATTCTGGTGATTTTTGTGATTTGGGTTCTTTGAGGCCAATTATCCTCTCTCCTCTTTGTGTCAAAGAAGTTGATGAAAATCAAAAGGGTGGAAAACTAAGTTCTATTATAACCTCTTCCGTTCGTAGTCAGATTAGAAAGCGGCGTAACCATAATAAAAATGGAGGTGGTTGTCATACTAATGGTAAGTCACGAGGTTCAGCCGTTGCTGATCCAACATTATTAGAATATGTGTTGAACAGTCTTAAGCGGAACAAGTACAACGATGGGAAGCTCTTTGACCCCACAAAAAATGGTAGAGCATCAGGGAATGGTTTAAATGTTACCCCTAGCCAAATCAAGAAATACACGTTGGTTGATTTGCCAAAAGATGCTAGGCCACTTTTGGTCTTCATCAATACCAGAAGTGGTGGGCAGCTTGGGCCTTCTCTTCACAGAAGATTGAATATGCTACTAAATCCTGTTCAGGTCTTTGTATTGAGTGCTTCTCAAGGTCCTGAGGTAGGTCTGGAATTGTTCAAAAGTGTACCATATTTTAGAGTATTGGTTTGTGGCGGGGATGGCACTGTTGCATGGGTCCTCGATGCTATAGAAAAACACAATTTTGAGTCACCTCCACCTGTTGCAATTATTCCCCTAGGCACTGGAAATGATTTGTCCAGGGTTATGAATTGGGGAGGAGGCTTCTCTGCACTGGATGGACAGGGCGGGCTGACCATGCTTTTGCATGACATTAGCATTGCAGCAGTTACTATGTTAGATCGTTGGGAAGTTAAACTTGCAGAAGAAGACTCTGAAGGAAAACCACATAAAGTGAAAACTAAATCCATGATGAACTACCTAGGAATTGGATGTGATGCAAAGGTTGCATATGAATTTCATGTTACTCGAGAGATAAATCCTGAAAAGTTTAGTAGCCAGTTTTTTAATAAATTACGATATGCAAAAGAAGGAGCAAGAGACATTATGGACAGAACTTGTGCTGACTTGCCATGGCAAGTATGGCTTGAAGTGGACGGAAGAGACATTGAGATTCCCAAGGATTCAGAAGGCTTAATTGTGCTTAATATTGGGAGCTACATGGGTGGAGTAGATCTTTGGAAAAATGACTATGAGCATGATGATGATGATTTCAGTCTTCAATCCATGCATGACAAGATGCTTGAGGTAGTATGTGTTTGTGGAGCATGGCACCTGGGGAAACTTCAGGTTGGACTTTCACAAGCAAGAAGGCTAGCTCAAGGCAAAGTCATCAAGATACACTCTTCCAGTCCTTTCCCAGTTCAAATAGATGGGGAACCATTTATCCTACAACCAGGCTACATAGAGTTAACTCATCGTGGACAGGTATTCATGTTGAGGAGGACTTCAGAAGATGAGCCTAAAGGACAAGCAGCTGCTATAATGACAGAAGTATTATTAGAAGCGGAATGCAAGGGCATTATTAATACATCTCAGAGAAAAGTTCTTCTCAAGGACATAGCCATCAATCTTTCTTAA
Protein sequence

>Msa0705940

MSFVMFDLGIVILRFLTSPDASIASIFGWLITGSFGLVAVIYAVLKWQRRASLNWIKAAAREKKKVWKKFKVPLSDHLWVEDFTYGEQPSTCCFCLTSLWPSQNLGATASPRTPLHRCSVCGVAAHFLCSPYAAKDCKCVAQAGFSHIRHHWSERWVNVDDHHEMSAFCFYCDEACGVPFVKSSPTWHCRWCQRLIHVKCHNNLTRDSGDFCDLGSLRPIILSPLCVKEVDENQKGGKLSSIITSSVRSQIRKRRNHNKNGGGCHTNGKSRGSAVADPTLLEYVLNSLKRNKYNDGKLFDPTKNGRASGNGLNVTPSQIKKYTLVDLPKDARPLLVFINTRSGGQLGPSLHRRLNMLLNPVQVFVLSASQGPEVGLELFKSVPYFRVLVCGGDGTVAWVLDAIEKHNFESPPPVAIIPLGTGNDLSRVMNWGGGFSALDGQGGLTMLLHDISIAAVTMLDRWEVKLAEEDSEGKPHKVKTKSMMNYLGIGCDAKVAYEFHVTREINPEKFSSQFFNKLRYAKEGARDIMDRTCADLPWQVWLEVDGRDIEIPKDSEGLIVLNIGSYMGGVDLWKNDYEHDDDDFSLQSMHDKMLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIKIHSSSPFPVQIDGEPFILQPGYIELTHRGQVFMLRRTSEDEPKGQAAAIMTEVLLEAECKGIINTSQRKVLLKDIAINLS*