AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343500 MtrunA17_Chr8g0384961 98.582 705 10 0 1 705 1 705 0.0 1447
Msa1343500 MtrunA17_Chr4g0061331 49.929 707 323 8 26 705 25 727 0.0 704
Msa1343500 MtrunA17_Chr8g0360931 29.219 397 211 11 331 659 34 428 3.12e-37 145
Msa1343500 MtrunA17_Chr2g0323521 29.665 418 222 13 310 659 16 429 3.98e-37 145
Msa1343500 MtrunA17_Chr4g0022651 29.567 416 219 14 314 659 17 428 5.25e-37 145
Msa1343500 MtrunA17_Chr4g0072941 31.746 378 182 13 333 641 85 455 7.24e-37 144
Msa1343500 MtrunA17_Chr2g0305591 29.365 378 193 12 332 641 92 463 1.11e-32 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343500 AT5G63770.1 66.760 716 219 6 5 705 1 712 0.0 979
Msa1343500 AT5G63770.2 66.760 716 219 6 5 705 1 712 0.0 979
Msa1343500 AT5G07920.3 50.494 709 313 11 26 705 29 728 0.0 695
Msa1343500 AT5G07920.1 50.494 709 313 11 26 705 29 728 0.0 695
Msa1343500 AT5G07920.2 50.453 662 291 10 26 658 29 682 0.0 649
Msa1343500 AT2G20900.4 29.574 399 212 12 328 659 35 431 2.55e-36 144
Msa1343500 AT2G20900.1 29.574 399 212 12 328 659 35 431 2.55e-36 144
Msa1343500 AT2G20900.3 29.574 399 212 12 328 659 35 431 3.26e-36 143
Msa1343500 AT2G20900.2 29.574 399 212 12 328 659 35 431 3.26e-36 143
Msa1343500 AT4G28130.1 27.692 390 215 11 333 659 47 432 6.03e-36 142
Msa1343500 AT5G57690.1 29.058 382 187 12 333 641 90 460 1.68e-35 141
Msa1343500 AT2G18730.1 30.343 379 186 13 333 641 91 461 1.03e-33 135
Msa1343500 AT4G30340.1 29.319 382 187 13 333 641 94 465 3.28e-33 134
Msa1343500 AT4G30340.2 33.755 237 105 8 333 521 94 326 9.51e-27 113

Find 205 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGAACGAGAGAGGAATTT+TGG 0.117261 tig0006451:+39292 None:intergenic
CTATGGCCTTCTCAAAATTT+AGG 0.158150 tig0006451:-37857 Msa1343500:CDS
AATGATCAGGTTGTACATTT+TGG 0.221591 tig0006451:-38191 Msa1343500:intron
CTCTCTCGTTCTCGCTCTTC+AGG 0.227603 tig0006451:-39283 Msa1343500:five_prime_UTR
CCAACGTGTATTTCTTGATT+TGG 0.257432 tig0006451:+37201 None:intergenic
AACAATTTGACTAGAGATTC+TGG 0.272349 tig0006451:-37548 Msa1343500:CDS
CCCAAGCTGCCCACCACTTC+TGG 0.283169 tig0006451:+37133 None:intergenic
CCTTTCCCAGTTCAAATAGA+TGG 0.283248 tig0006451:-33437 Msa1343500:CDS
CTAAAATAGTTGCCCAACTT+TGG 0.307010 tig0006451:-32993 Msa1343500:three_prime_UTR
CAAAGAGGAGAGAGGATAAT+TGG 0.308348 tig0006451:+37497 None:intergenic
CTGACTTGCCATGGCAAGTA+TGG 0.313060 tig0006451:-34539 Msa1343500:CDS
CAAACCAATACTCTAAAATA+TGG 0.318489 tig0006451:+35550 None:intergenic
ATTTGTCCAGGGTTATGAAT+TGG 0.320327 tig0006451:-35426 Msa1343500:CDS
AAAAGATGCTAGGCCACTTT+TGG 0.323510 tig0006451:-37168 Msa1343500:CDS
TAGCCTGGTTGTAGGATAAA+TGG 0.328389 tig0006451:+33410 None:intergenic
AGAAGGAGCAAGAGACATTA+TGG 0.333839 tig0006451:-34574 Msa1343500:CDS
ATAGCAGCTGCTTGTCCTTT+AGG 0.335006 tig0006451:+33135 None:intergenic
TGGCTGATCACTGGATCATT+TGG 0.342110 tig0006451:-38067 Msa1343500:CDS
GGTTCCCCATCTATTTGAAC+TGG 0.347647 tig0006451:+33431 None:intergenic
GTGGGGATGGCACTGTTGCA+TGG 0.347792 tig0006451:-35525 Msa1343500:CDS
AAAAGTGGCCTAGCATCTTT+TGG 0.355294 tig0006451:+37170 None:intergenic
TAAAATAGTTGCCCAACTTT+GGG 0.363670 tig0006451:-32992 Msa1343500:three_prime_UTR
TTTGTCCAGGGTTATGAATT+GGG 0.365198 tig0006451:-35425 Msa1343500:CDS
CCAGAAGTGGTGGGCAGCTT+GGG 0.370938 tig0006451:-37133 Msa1343500:CDS
TACTGATATGTATATGTTCA+TGG 0.373326 tig0006451:-32733 Msa1343500:three_prime_UTR
TGTAAATGTGTGGCTCAGGC+TGG 0.373393 tig0006451:-37743 Msa1343500:CDS
CTCCATCGTTGCTCGGTTTG+TGG 0.376745 tig0006451:-37809 Msa1343500:CDS
ACATGGGTGGAGTAGATCTT+TGG 0.383148 tig0006451:-34343 Msa1343500:CDS
CTCTAATCTCATTTGGGTGT+TGG 0.384881 tig0006451:+32767 None:intergenic
TGGGGATGGCACTGTTGCAT+GGG 0.391770 tig0006451:-35524 Msa1343500:CDS
CTTCTCTGCACTGGATGGAC+AGG 0.393997 tig0006451:-35395 Msa1343500:CDS
AGCGACGAGCGTCTTTGAAT+TGG 0.396069 tig0006451:-38009 Msa1343500:CDS
TTCCTCTGTCGGATCATTTG+TGG 0.397710 tig0006451:-37937 Msa1343500:CDS
CGATTTGAATGAGATCAAAA+TGG 0.403141 tig0006451:+39188 None:intergenic
ATCTTACATTAGCTGCTTTG+TGG 0.403557 tig0006451:+32889 None:intergenic
AGTTACTATGTTAGATCGTT+GGG 0.404411 tig0006451:-35332 Msa1343500:CDS
TCATTCAAATCGATCGTGTT+AGG 0.407253 tig0006451:-39177 Msa1343500:intron
ACCAGAAGTGGTGGGCAGCT+TGG 0.411845 tig0006451:-37134 Msa1343500:CDS
CCAGGGAAAAGAAGAAAGTT+TGG 0.416730 tig0006451:-37973 Msa1343500:CDS
TCCTCTGTCGGATCATTTGT+GGG 0.421592 tig0006451:-37936 Msa1343500:CDS
CCTTCCTTCCCCTTCTTCCA+AGG 0.422529 tig0006451:+39353 None:intergenic
GACACCATTGGTCAGAAAGA+TGG 0.424732 tig0006451:-37706 Msa1343500:CDS
AATCAAGTAATCACCTGAAC+AGG 0.428109 tig0006451:+37074 None:intergenic
AGAAGTTGATGAAAATCAAA+AGG 0.428769 tig0006451:-37468 Msa1343500:CDS
TATGCTACTAAATCCTGTTC+AGG 0.429704 tig0006451:-37087 Msa1343500:intron
AATAAAATAATATGTTTCCT+TGG 0.430920 tig0006451:-39370 Msa1343500:five_prime_UTR
TCAAGGTCCTGAGGTAGGTC+TGG 0.435183 tig0006451:-35590 Msa1343500:CDS
GGGAGGAGGCTTCTCTGCAC+TGG 0.438297 tig0006451:-35404 Msa1343500:CDS
ACTCTATGTAGCCTGGTTGT+AGG 0.440612 tig0006451:+33402 None:intergenic
TGGAAGAAGGGGAAGGAAGG+GGG 0.443612 tig0006451:-39350 Msa1343500:five_prime_UTR
ATGGCACCTGGGGAAACTTC+AGG 0.443641 tig0006451:-34234 Msa1343500:intron
GCTTAATTGTGCTTAACATT+GGG 0.444048 tig0006451:-34370 Msa1343500:CDS
ATGTATATGTTCATGGGTCT+TGG 0.444422 tig0006451:-32726 Msa1343500:three_prime_UTR
ATAGATGCAATGGAAGCATC+AGG 0.447107 tig0006451:+38097 None:intergenic
CTTGAGGTAGTATGTGTTTG+TGG 0.447255 tig0006451:-34260 Msa1343500:CDS
TACTCCCCTCCATCGTTGCT+CGG 0.452691 tig0006451:-37816 Msa1343500:CDS
TTGGAAGAAGGGGAAGGAAG+GGG 0.454182 tig0006451:-39351 Msa1343500:five_prime_UTR
TTAGAGTATTGGTTTGTGGT+GGG 0.454440 tig0006451:-35543 Msa1343500:CDS
GGAGGTGGTTGTCATACTAA+TGG 0.454823 tig0006451:-37371 Msa1343500:CDS
GGCTTAATTGTGCTTAACAT+TGG 0.454882 tig0006451:-34371 Msa1343500:CDS
AACACATATTCTAATAATGT+TGG 0.460827 tig0006451:+37320 None:intergenic
TAATATGTTTCCTTGGAAGA+AGG 0.460923 tig0006451:-39363 Msa1343500:five_prime_UTR
CAACACCCAAATGAGATTAG+AGG 0.461132 tig0006451:-32766 Msa1343500:three_prime_UTR
GTGTATTTCTTGATTTGGCT+AGG 0.463049 tig0006451:+37206 None:intergenic
CTAAAATAAATAATAATAGT+TGG 0.471741 tig0006451:-39406 Msa1343500:five_prime_UTR
GCAATTATTCCCCTAGGCAC+TGG 0.473554 tig0006451:-35454 Msa1343500:CDS
CTTTCCCAGTTCAAATAGAT+GGG 0.476790 tig0006451:-33436 Msa1343500:CDS
TCCTGAAAAGTTTAGTAGCC+AGG 0.480291 tig0006451:-35109 Msa1343500:intron
ATTGGATTAAAGCTGCGGCC+AGG 0.481183 tig0006451:-37991 Msa1343500:CDS
TGTATTTCTTGATTTGGCTA+GGG 0.481749 tig0006451:+37207 None:intergenic
TAGAGTATTGGTTTGTGGTG+GGG 0.488695 tig0006451:-35542 Msa1343500:CDS
GGAAGAAGGGGAAGGAAGGG+GGG 0.490699 tig0006451:-39349 Msa1343500:five_prime_UTR
CAAATCATTTCCAGTGCCTA+GGG 0.490800 tig0006451:+35444 None:intergenic
CTCCTACATGGCATTGTCGT+TGG 0.492326 tig0006451:-37601 Msa1343500:CDS
TCAACTTCTTTGACACAAAG+AGG 0.493022 tig0006451:+37482 None:intergenic
AATATGTTTCCTTGGAAGAA+GGG 0.493561 tig0006451:-39362 Msa1343500:five_prime_UTR
CCTAGGGGAATAATTGCAAC+AGG 0.494366 tig0006451:+35460 None:intergenic
GCACTGGAAATGATTTGTCC+AGG 0.495702 tig0006451:-35438 Msa1343500:CDS
TGTTTGTGGAGCATGGCACC+TGG 0.496233 tig0006451:-34246 Msa1343500:CDS
TTACAGTCCTTTGCTGCATA+CGG 0.496296 tig0006451:+37761 None:intergenic
GTATTGGTTTGTGGTGGGGA+TGG 0.496566 tig0006451:-35538 Msa1343500:CDS
ACACCATTGGTCAGAAAGAT+GGG 0.497299 tig0006451:-37705 Msa1343500:CDS
ATGGTCCTATAAAAGGGGTC+TGG 0.497596 tig0006451:+32959 None:intergenic
GGAATAATTGCAACAGGTGG+AGG 0.497750 tig0006451:+35466 None:intergenic
CAGTTACTATGTTAGATCGT+TGG 0.497824 tig0006451:-35333 Msa1343500:CDS
CCTTGGAAGAAGGGGAAGGA+AGG 0.498394 tig0006451:-39353 Msa1343500:five_prime_UTR
CGGATCTTAAGAAAGATTGA+TGG 0.504050 tig0006451:+33032 None:intergenic
TTTGTGATTTGGGTTCTTTG+AGG 0.504434 tig0006451:-37520 Msa1343500:CDS
CTCAAGCATCTTGTCATGCA+TGG 0.504681 tig0006451:+34277 None:intergenic
GTTTCTGTTTGACTTCCCTA+TGG 0.506997 tig0006451:-37874 Msa1343500:CDS
TTGGATTAAAGCTGCGGCCA+GGG 0.511143 tig0006451:-37990 Msa1343500:CDS
TTTAGAGTATTGGTTTGTGG+TGG 0.513610 tig0006451:-35544 Msa1343500:CDS
CACCACAAACCGAGCAACGA+TGG 0.514753 tig0006451:+37807 None:intergenic
CCATCTATTTGAACTGGGAA+AGG 0.516877 tig0006451:+33437 None:intergenic
AGGGTTATGAATTGGGGAGG+AGG 0.517441 tig0006451:-35418 Msa1343500:CDS
GCTTAACATTGGGAGCTACA+TGG 0.517739 tig0006451:-34360 Msa1343500:CDS
CTGCACTGGATGGACAGGGC+GGG 0.519579 tig0006451:-35390 Msa1343500:CDS
GTAAATGTGTGGCTCAGGCT+GGG 0.521953 tig0006451:-37742 Msa1343500:CDS
GGAGGCTTCTCTGCACTGGA+TGG 0.522202 tig0006451:-35400 Msa1343500:CDS
TATGACATTTCACATGAATG+AGG 0.525047 tig0006451:+37570 None:intergenic
CTTGGAAGAAGGGGAAGGAA+GGG 0.525869 tig0006451:-39352 Msa1343500:five_prime_UTR
TTAGTCATATTAGACACCAT+TGG 0.526392 tig0006451:-37718 Msa1343500:CDS
AAGTTAACAAACAGCTTCCA+AGG 0.526457 tig0006451:-32664 Msa1343500:three_prime_UTR
TTGTAAAATCCTCTCCTACA+TGG 0.527594 tig0006451:-37613 Msa1343500:CDS
GGACTGTAAATGTGTGGCTC+AGG 0.529683 tig0006451:-37747 Msa1343500:CDS
TTGTTCTCCGTATGCAGCAA+AGG 0.536894 tig0006451:-37768 Msa1343500:CDS
TTGATTTGCCAAAAGATGCT+AGG 0.537796 tig0006451:-37178 Msa1343500:CDS
AAATTACGATATGCAAAAGA+AGG 0.539584 tig0006451:-34591 Msa1343500:CDS
CCTATACCTGAAGTTTCCCC+AGG 0.540525 tig0006451:+34228 None:intergenic
TTCATCAATACCAGAAGTGG+TGG 0.542080 tig0006451:-37143 Msa1343500:CDS
AAAATTTAAAGTTCCTCTGT+CGG 0.542199 tig0006451:-37948 Msa1343500:CDS
TTGTCCAGGGTTATGAATTG+GGG 0.543064 tig0006451:-35424 Msa1343500:CDS
TAACCCATCTTTCTGACCAA+TGG 0.545670 tig0006451:+37702 None:intergenic
GAAGTTGATGAAAATCAAAA+GGG 0.545718 tig0006451:-37467 Msa1343500:CDS
CACTGGAAATGATTTGTCCA+GGG 0.546870 tig0006451:-35437 Msa1343500:CDS
GTTGATGAAAATCAAAAGGG+TGG 0.550454 tig0006451:-37464 Msa1343500:CDS
TTTGTATTGAGTGCTTCTCA+AGG 0.550465 tig0006451:-35607 Msa1343500:CDS
GGTTGCAATATACACAGCCT+AGG 0.551123 tig0006451:+32841 None:intergenic
GTATTTCTTGATTTGGCTAG+GGG 0.552227 tig0006451:+37208 None:intergenic
TTCAATCTTCTGTGAAGAGA+AGG 0.552681 tig0006451:+37110 None:intergenic
ACAAACCGAGCAACGATGGA+GGG 0.557150 tig0006451:+37811 None:intergenic
GACAGAAGTATTATTAGAAG+CGG 0.557422 tig0006451:-33109 Msa1343500:CDS
TTCTCTGCACTGGATGGACA+GGG 0.560238 tig0006451:-35394 Msa1343500:CDS
TGAGTTAACTCTATGTAGCC+TGG 0.560280 tig0006451:+33395 None:intergenic
CCTGTTGCAATTATTCCCCT+AGG 0.560632 tig0006451:-35460 Msa1343500:CDS
ATTATTAGAAGCGGAATGCA+AGG 0.561033 tig0006451:-33100 Msa1343500:CDS
TCCTCCCCAATTCATAACCC+TGG 0.562331 tig0006451:+35420 None:intergenic
AATGGTAGAGCATCAGGGAA+TGG 0.563261 tig0006451:-37242 Msa1343500:CDS
AACAATTCCAGACCTACCTC+AGG 0.563599 tig0006451:+35583 None:intergenic
ACTGATATGTATATGTTCAT+GGG 0.564421 tig0006451:-32732 Msa1343500:three_prime_UTR
ATATGTTTCCTTGGAAGAAG+GGG 0.566391 tig0006451:-39361 Msa1343500:five_prime_UTR
GTCTTCATCAATACCAGAAG+TGG 0.567567 tig0006451:-37146 Msa1343500:CDS
AGAGTTAACTCATCGTGGAC+AGG 0.568974 tig0006451:-33384 Msa1343500:intron
AACACCCAAATGAGATTAGA+GGG 0.570406 tig0006451:-32765 Msa1343500:three_prime_UTR
GCTTCTCAAGGTCCTGAGGT+AGG 0.571347 tig0006451:-35595 Msa1343500:CDS
TAGTATGTGTTTGTGGAGCA+TGG 0.572843 tig0006451:-34253 Msa1343500:CDS
CACAAACCGAGCAACGATGG+AGG 0.572989 tig0006451:+37810 None:intergenic
TTGGACTTTCACAAGCAAGA+AGG 0.573900 tig0006451:-33499 Msa1343500:CDS
ACTTCAGAAGATGAGCCTAA+AGG 0.574123 tig0006451:-33150 Msa1343500:CDS
TCAGAGAAAAGTTCTTCTCA+AGG 0.575293 tig0006451:-33061 Msa1343500:CDS
TCCAGGGTTATGAATTGGGG+AGG 0.578634 tig0006451:-35421 Msa1343500:CDS
ACAAATCATTTCCAGTGCCT+AGG 0.580261 tig0006451:+35443 None:intergenic
AGTACCTAGGTAGTTCATCA+TGG 0.582057 tig0006451:+35252 None:intergenic
CTTAACATTGGGAGCTACAT+GGG 0.586587 tig0006451:-34359 Msa1343500:CDS
GTTCCCCATCTATTTGAACT+GGG 0.587718 tig0006451:+33432 None:intergenic
ATACTCAGGTATTCATGTTG+AGG 0.588169 tig0006451:-33176 Msa1343500:intron
GAACTTGTGCTGACTTGCCA+TGG 0.588243 tig0006451:-34548 Msa1343500:CDS
AGCGGAACAAGTACAACGAT+GGG 0.589787 tig0006451:-37286 Msa1343500:CDS
TTAGAAGGCTGAACGAGAAG+CGG 0.593274 tig0006451:+33012 None:intergenic
CTCAGGTATTCATGTTGAGG+AGG 0.594023 tig0006451:-33173 Msa1343500:intron
TCATATACGCTGTTCTCAAG+TGG 0.595470 tig0006451:-38033 Msa1343500:CDS
CTGAAGAGCGAGAACGAGAG+AGG 0.596739 tig0006451:+39284 None:intergenic
GTCAGAAAGATGGGTTAATG+TGG 0.597798 tig0006451:-37696 Msa1343500:CDS
ACTGTTGCGTCTAACACCCT+AGG 0.600078 tig0006451:-32858 Msa1343500:three_prime_UTR
ATGTGTTTAACAGTCTTAAG+CGG 0.602646 tig0006451:-37304 Msa1343500:CDS
ACTTCAAGCCATACTTGCCA+TGG 0.604236 tig0006451:+34531 None:intergenic
AATCTGACTACGAACGGAAG+AGG 0.604553 tig0006451:+37421 None:intergenic
TCTGCACTGGATGGACAGGG+CGG 0.605556 tig0006451:-35391 Msa1343500:CDS
GTTTCCTTGGAAGAAGGGGA+AGG 0.608328 tig0006451:-39357 Msa1343500:five_prime_UTR
CACCAACGACAATGCCATGT+AGG 0.612205 tig0006451:+37599 None:intergenic
TTGTATACGTAGTGTGTGTG+TGG 0.612544 tig0006451:-32699 Msa1343500:three_prime_UTR
CAAGTATGGCTTGAAGTGGA+CGG 0.614916 tig0006451:-34525 Msa1343500:CDS
CAAACCGAGCAACGATGGAG+GGG 0.615893 tig0006451:+37812 None:intergenic
CTTGCAGAAGAAGACTCTGA+AGG 0.617154 tig0006451:-35301 Msa1343500:CDS
CTTTCTAATCTGACTACGAA+CGG 0.619916 tig0006451:+37415 None:intergenic
CAAGCAAGAAGGCTAGCTCA+AGG 0.620516 tig0006451:-33488 Msa1343500:CDS
TAATAATGTTGGATCAGCAA+CGG 0.620656 tig0006451:+37331 None:intergenic
TTTGAATTGGATTAAAGCTG+CGG 0.622591 tig0006451:-37996 Msa1343500:CDS
GCTAATGTCATGCAAAAGCA+TGG 0.623168 tig0006451:+35363 None:intergenic
AAACAGAAACAACAAGTGGA+TGG 0.623509 tig0006451:+37887 None:intergenic
TATTTGAACTGGGAAAGGAC+TGG 0.625634 tig0006451:+33442 None:intergenic
CTTTGACACAAAGAGGAGAG+AGG 0.630517 tig0006451:+37489 None:intergenic
GTATTGATGAAGACCAAAAG+TGG 0.630832 tig0006451:+37155 None:intergenic
GAGTGCTTCTCAAGGTCCTG+AGG 0.635853 tig0006451:-35599 Msa1343500:CDS
ATGGCAAGTATGGCTTGAAG+TGG 0.638346 tig0006451:-34529 Msa1343500:CDS
TTTGTGGAGCATGGCACCTG+GGG 0.638912 tig0006451:-34244 Msa1343500:CDS
CAACGATGGAGGGGAGTACG+TGG 0.640506 tig0006451:+37821 None:intergenic
AAGCGGAACAAGTACAACGA+TGG 0.640980 tig0006451:-37287 Msa1343500:CDS
AGGGGAATAATTGCAACAGG+TGG 0.642218 tig0006451:+35463 None:intergenic
AAATCCATGATGAACTACCT+AGG 0.642755 tig0006451:-35256 Msa1343500:intron
TAGATGCAATGGAAGCATCA+GGG 0.643701 tig0006451:+38098 None:intergenic
TTATTAGAAGCGGAATGCAA+GGG 0.645490 tig0006451:-33099 Msa1343500:CDS
AGGAATTGGATGTGATGCAA+AGG 0.645990 tig0006451:-35166 Msa1343500:CDS
CATGCATGACAAGATGCTTG+AGG 0.647805 tig0006451:-34276 Msa1343500:CDS
GTTTGTGGAGCATGGCACCT+GGG 0.648926 tig0006451:-34245 Msa1343500:CDS
CTTGAGAACAGCGTATATGA+CGG 0.649367 tig0006451:+38036 None:intergenic
ACGACAATGCCATGTAGGAG+AGG 0.650346 tig0006451:+37604 None:intergenic
TTAGCTGCTTTGTGGAAGTG+TGG 0.650819 tig0006451:+32897 None:intergenic
GTTGCAATATACACAGCCTA+GGG 0.651900 tig0006451:+32842 None:intergenic
AAGAGACATTGAGATTCCCA+AGG 0.653403 tig0006451:-34502 Msa1343500:intron
TTTCCCAGTTCAAATAGATG+GGG 0.658576 tig0006451:-33435 Msa1343500:CDS
AGTCAAACAGAAACAACAAG+TGG 0.662259 tig0006451:+37883 None:intergenic
ATGGAGGGGAGTACGTGGTG+AGG 0.665215 tig0006451:+37826 None:intergenic
TTCGTAGTCAGATTAGAAAG+CGG 0.668976 tig0006451:-37412 Msa1343500:CDS
CATACTAATGGTAAGTCACG+AGG 0.672018 tig0006451:-37359 Msa1343500:CDS
CCAAATCAAGAAATACACGT+TGG 0.672676 tig0006451:-37201 Msa1343500:CDS
GAACCATTTATCCTACAACC+AGG 0.677637 tig0006451:-33413 Msa1343500:CDS
TCATCAATACCAGAAGTGGT+GGG 0.679359 tig0006451:-37142 Msa1343500:CDS
AACATTGGGAGCTACATGGG+TGG 0.684362 tig0006451:-34356 Msa1343500:CDS
TTGCTGCATACGGAGAACAA+AGG 0.694647 tig0006451:+37771 None:intergenic
ACCCACAAATGATCCGACAG+AGG 0.696039 tig0006451:+37935 None:intergenic
AGGCTGTGTATATTGCAACC+CGG 0.700697 tig0006451:-32838 Msa1343500:three_prime_UTR
TACATAGAGTTAACTCATCG+TGG 0.708322 tig0006451:-33389 Msa1343500:CDS
AAATCATTTCCAGTGCCTAG+GGG 0.708420 tig0006451:+35445 None:intergenic
AGCAAAGGACTGTAAATGTG+TGG 0.723555 tig0006451:-37753 Msa1343500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAATAAATAATAATAGT+TGG - tig0006451:32672-32691 Msa1343500:three_prime_UTR 10.0%
!! AATATAAAAAAGAAATTGTA+GGG + tig0006451:33064-33083 None:intergenic 10.0%
!! AAATATAAAAAAGAAATTGT+AGG + tig0006451:33065-33084 None:intergenic 10.0%
!! TACATAAATAAAAATGATAA+TGG + tig0006451:33088-33107 None:intergenic 10.0%
!! TGAAATTAAATATAAAGTAT+GGG + tig0006451:33788-33807 None:intergenic 10.0%
!!! AAAAAATATTTTATACTTGA+AGG + tig0006451:35664-35683 None:intergenic 10.0%
!! AACATTTATAAAAAAGTAAA+AGG - tig0006451:35736-35755 Msa1343500:intron 10.0%
!! TTTACATATAAATTTATAGA+AGG + tig0006451:37645-37664 None:intergenic 10.0%
!!! TAATTTTTTTTTTTTCATGA+AGG - tig0006451:37676-37695 Msa1343500:CDS 10.0%
!!! GGAAACATATTATTTTATTT+TGG + tig0006451:32707-32726 None:intergenic 15.0%
!! AATAAAATAATATGTTTCCT+TGG - tig0006451:32708-32727 Msa1343500:three_prime_UTR 15.0%
!!! TTTTTTATTCAAAGTTTGTT+TGG - tig0006451:33238-33257 Msa1343500:intron 15.0%
!!! AAAATTAAGTGTTTTATGTT+TGG - tig0006451:33294-33313 Msa1343500:intron 15.0%
!! CTGAAATTAAATATAAAGTA+TGG + tig0006451:33789-33808 None:intergenic 15.0%
!!! GATTTGTTATAATATATTCA+AGG + tig0006451:35223-35242 None:intergenic 15.0%
!!! TGAAGTGTATTTTAAATAAT+TGG + tig0006451:35554-35573 None:intergenic 15.0%
!!! TATTTACATTACCATTTTTA+CGG - tig0006451:37082-37101 Msa1343500:intron 15.0%
!!! ATCTTTGTTGATTTATTTAT+AGG + tig0006451:38215-38234 None:intergenic 15.0%
!! CATGATTTATGAAATGAATA+CGG - tig0006451:33143-33162 Msa1343500:CDS 20.0%
!!! ATAATTGATTTTGACATGTT+TGG + tig0006451:33449-33468 None:intergenic 20.0%
!! AACACATATTCTAATAATGT+TGG + tig0006451:34761-34780 None:intergenic 20.0%
!! AGTAGAAAAAGAAAGAAAAA+AGG + tig0006451:35319-35338 None:intergenic 20.0%
!! AGATGTAATAATGTGAAATT+TGG - tig0006451:35523-35542 Msa1343500:CDS 20.0%
!!! TGTTAATTTTCTCATCAATA+GGG - tig0006451:36112-36131 Msa1343500:intron 20.0%
!! CTCTTAAAGAATTATTTAGT+GGG + tig0006451:36322-36341 None:intergenic 20.0%
!!! AATAATTCTTTAAGAGCAAA+TGG - tig0006451:36326-36345 Msa1343500:intron 20.0%
!!! GAATAGATATTTTACAATGA+TGG + tig0006451:37019-37038 None:intergenic 20.0%
!! GTAAAAATAATTATCAGCAT+CGG + tig0006451:37609-37628 None:intergenic 20.0%
!! ACATATAAATTTATAGAAGG+CGG + tig0006451:37642-37661 None:intergenic 20.0%
!! GGTATTTAATATTTAATGAG+AGG - tig0006451:38000-38019 Msa1343500:CDS 20.0%
!! TAAACTGTAACATCAAAAAA+AGG - tig0006451:38085-38104 Msa1343500:CDS 20.0%
!! AAACTGTAACATCAAAAAAA+GGG - tig0006451:38086-38105 Msa1343500:CDS 20.0%
!! TTTGAGCTTTCAAATTTAAT+CGG - tig0006451:38323-38342 Msa1343500:intron 20.0%
!! AAACAGATAAAAGACATTTA+CGG - tig0006451:38518-38537 Msa1343500:intron 20.0%
!! TTTCCAAAAAATATAGAGAA+AGG - tig0006451:39151-39170 Msa1343500:intron 20.0%
!!! ATACCTTTCTCTATATTTTT+TGG + tig0006451:39157-39176 None:intergenic 20.0%
!! AAAGAAAAAAAAAAATACGC+CGG + tig0006451:39262-39281 None:intergenic 20.0%
!! TCAAAATGGAGAAGAATTTT+TGG + tig0006451:32879-32898 None:intergenic 25.0%
!!! AATTGATTTTACCTCCAAAA+TGG + tig0006451:33412-33431 None:intergenic 25.0%
! AGAAAATCAATTCTGATTGA+GGG - tig0006451:33615-33634 Msa1343500:intron 25.0%
! CCATAAATTATGTGTATGTT+TGG + tig0006451:33665-33684 None:intergenic 25.0%
! CCAAACATACACATAATTTA+TGG - tig0006451:33662-33681 Msa1343500:intron 25.0%
!! ATTTGGGAATTGTAATTTTG+AGG - tig0006451:33946-33965 Msa1343500:intron 25.0%
!! AAAATTTAAAGTTCCTCTGT+CGG - tig0006451:34130-34149 Msa1343500:intron 25.0%
!!! AGAAGTTGATGAAAATCAAA+AGG - tig0006451:34610-34629 Msa1343500:intron 25.0%
!!! GAAGTTGATGAAAATCAAAA+GGG - tig0006451:34611-34630 Msa1343500:intron 25.0%
!! AAATTTTGTGATCTTAGATC+AGG - tig0006451:35158-35177 Msa1343500:CDS 25.0%
!! TCTTAAGATATAGTCTGTTT+TGG - tig0006451:35247-35266 Msa1343500:intron 25.0%
! TATTTCCAAAACTTTGGTAA+TGG + tig0006451:35502-35521 None:intergenic 25.0%
! CATCTATATTTCCAAAACTT+TGG + tig0006451:35508-35527 None:intergenic 25.0%
! TGTAATAATGTGAAATTTGG+TGG - tig0006451:35526-35545 Msa1343500:CDS 25.0%
! TTTATGCAATCAGGAATTAT+AGG + tig0006451:35863-35882 None:intergenic 25.0%
! ATCTTCTTAAAAACTGTTGA+CGG - tig0006451:35965-35984 Msa1343500:intron 25.0%
!!! TCAAGACTGTGTTTTATTAT+TGG - tig0006451:36085-36104 Msa1343500:intron 25.0%
!! CTGTTAATTTTCTCATCAAT+AGG - tig0006451:36111-36130 Msa1343500:intron 25.0%
!! ATAGGGTTTCTTTAGAAAAA+AGG - tig0006451:36129-36148 Msa1343500:intron 25.0%
! CATATCATACAGTATCATAA+GGG + tig0006451:36172-36191 None:intergenic 25.0%
! TCATATCATACAGTATCATA+AGG + tig0006451:36173-36192 None:intergenic 25.0%
! GCTCTTAAAGAATTATTTAG+TGG + tig0006451:36323-36342 None:intergenic 25.0%
!!! TGTACCATATTTTAGAGTAT+TGG - tig0006451:36524-36543 Msa1343500:intron 25.0%
!!! CAAACCAATACTCTAAAATA+TGG + tig0006451:36531-36550 None:intergenic 25.0%
!!! TATTTTAGAGTATTGGTTTG+TGG - tig0006451:36531-36550 Msa1343500:intron 25.0%
!!! GATTTAGTTTTCACTTTATG+TGG + tig0006451:36807-36826 None:intergenic 25.0%
!! AATTCTCATAAGTCTTATCT+AGG - tig0006451:37380-37399 Msa1343500:CDS 25.0%
! AAATTACGATATGCAAAAGA+AGG - tig0006451:37487-37506 Msa1343500:CDS 25.0%
! AACTGTAACATCAAAAAAAG+GGG - tig0006451:38087-38106 Msa1343500:CDS 25.0%
!! TTTTGAATGACAAATGTTAG+TGG - tig0006451:38140-38159 Msa1343500:CDS 25.0%
! GTATTGAACTTTCATACTTA+CGG + tig0006451:38377-38396 None:intergenic 25.0%
! AAAAAATTGACAAAGACACT+TGG + tig0006451:38411-38430 None:intergenic 25.0%
! ATAATTATTTCAACAGACAG+AGG + tig0006451:38442-38461 None:intergenic 25.0%
!! TTTTCAAACGTAAATCTAAC+AGG - tig0006451:38815-38834 Msa1343500:intron 25.0%
!!! TTTTTGGAAATGACCAAAAA+TGG + tig0006451:39141-39160 None:intergenic 25.0%
! AAGAAAAAAAAAAATACGCC+GGG + tig0006451:39261-39280 None:intergenic 25.0%
! TACTGATATGTATATGTTCA+TGG - tig0006451:39345-39364 Msa1343500:five_prime_UTR 25.0%
! ACTGATATGTATATGTTCAT+GGG - tig0006451:39346-39365 Msa1343500:five_prime_UTR 25.0%
TAATATGTTTCCTTGGAAGA+AGG - tig0006451:32715-32734 Msa1343500:three_prime_UTR 30.0%
AATATGTTTCCTTGGAAGAA+GGG - tig0006451:32716-32735 Msa1343500:three_prime_UTR 30.0%
CGATTTGAATGAGATCAAAA+TGG + tig0006451:32893-32912 None:intergenic 30.0%
AAAGATGAGAGACATTGTAT+TGG + tig0006451:32939-32958 None:intergenic 30.0%
GTTGCAGCTATATTCAAAAA+TGG + tig0006451:32997-33016 None:intergenic 30.0%
AAAAAAGAAATTGTAGGGCA+CGG + tig0006451:33059-33078 None:intergenic 30.0%
! TTGGTTATGTGAATTGATTC+TGG - tig0006451:33257-33276 Msa1343500:intron 30.0%
ATGTTTGGTTACACTTATAG+AGG + tig0006451:33496-33515 None:intergenic 30.0%
ACGTGAATGTAGTATATGTT+TGG + tig0006451:33511-33530 None:intergenic 30.0%
! ACTGATTCTAACTTTAAGCT+AGG + tig0006451:33588-33607 None:intergenic 30.0%
GAGAAAATCAATTCTGATTG+AGG - tig0006451:33614-33633 Msa1343500:intron 30.0%
!! GGTTTGAATTTTGACAAGTT+TGG + tig0006451:33644-33663 None:intergenic 30.0%
TAGTAGGGTAGGAAAAAAAA+TGG + tig0006451:33744-33763 None:intergenic 30.0%
GTTATCTGTAACAATGATTG+AGG - tig0006451:33854-33873 Msa1343500:intron 30.0%
AGGTTTCTTATTGAATGATC+AGG - tig0006451:33874-33893 Msa1343500:intron 30.0%
!! AATGATCAGGTTGTACATTT+TGG - tig0006451:33887-33906 Msa1343500:intron 30.0%
!! AGTTTTGTCATGTTCGATTT+GGG - tig0006451:33930-33949 Msa1343500:intron 30.0%
TTTGAATTGGATTAAAGCTG+CGG - tig0006451:34082-34101 Msa1343500:intron 30.0%
!! TGGGTTGAAGATTTTACTTA+TGG - tig0006451:34161-34180 Msa1343500:intron 30.0%
! GGGTTGAAGATTTTACTTAT+GGG - tig0006451:34162-34181 Msa1343500:intron 30.0%
! GGTTGAAGATTTTACTTATG+GGG - tig0006451:34163-34182 Msa1343500:intron 30.0%
!! TAAATTTTGAGAAGGCCATA+GGG + tig0006451:34222-34241 None:intergenic 30.0%
TTAGTCATATTAGACACCAT+TGG - tig0006451:34360-34379 Msa1343500:CDS 30.0%
TATGACATTTCACATGAATG+AGG + tig0006451:34511-34530 None:intergenic 30.0%
AACAATTTGACTAGAGATTC+TGG - tig0006451:34530-34549 Msa1343500:CDS 30.0%
! TTCTGGTGATTTTTGTGATT+TGG - tig0006451:34547-34566 Msa1343500:CDS 30.0%
! TCTGGTGATTTTTGTGATTT+GGG - tig0006451:34548-34567 Msa1343500:CDS 30.0%
CGTAACCATAATAAAAATGG+AGG - tig0006451:34689-34708 Msa1343500:intron 30.0%
AACCATAATAAAAATGGAGG+TGG - tig0006451:34692-34711 Msa1343500:intron 30.0%
!! AACCACCTCCATTTTTATTA+TGG + tig0006451:34697-34716 None:intergenic 30.0%
TAATAATGTTGGATCAGCAA+CGG + tig0006451:34750-34769 None:intergenic 30.0%
ATGTGTTTAACAGTCTTAAG+CGG - tig0006451:34774-34793 Msa1343500:intron 30.0%
!! TGTATTTCTTGATTTGGCTA+GGG + tig0006451:34874-34893 None:intergenic 30.0%
!! AGATGTTTTAAGTGTGAGAT+TGG - tig0006451:35100-35119 Msa1343500:intron 30.0%
GATCTTGACTCATAATGTTA+AGG + tig0006451:35450-35469 None:intergenic 30.0%
! TAAATGGAAAGGGTATGAAA+TGG + tig0006451:35477-35496 None:intergenic 30.0%
!! AACTTTGGTAATGGACTAAA+TGG + tig0006451:35493-35512 None:intergenic 30.0%
! TTAGTCCATTACCAAAGTTT+TGG - tig0006451:35494-35513 Msa1343500:CDS 30.0%
ACTCTTCAAAACTACAGTAA+TGG - tig0006451:35576-35595 Msa1343500:CDS 30.0%
GACTCTAACATTATGTGATT+TGG - tig0006451:35622-35641 Msa1343500:intron 30.0%
! ATGTTTACAAGTGAGTGTTT+TGG - tig0006451:35923-35942 Msa1343500:intron 30.0%
AACAAAAAGGAGCTAAAACA+AGG - tig0006451:35997-36016 Msa1343500:intron 30.0%
TCATTTCATATCAGTCTCAA+TGG - tig0006451:36416-36435 Msa1343500:intron 30.0%
AGTTACTATGTTAGATCGTT+GGG - tig0006451:36746-36765 Msa1343500:intron 30.0%
!! TAACACCAACCTACTTTTAT+AGG - tig0006451:36892-36911 Msa1343500:intron 30.0%
CAATTCCTATAAAAGTAGGT+TGG + tig0006451:36900-36919 None:intergenic 30.0%
!! CAACCTACTTTTATAGGAAT+TGG - tig0006451:36898-36917 Msa1343500:intron 30.0%
CATCCAATTCCTATAAAAGT+AGG + tig0006451:36904-36923 None:intergenic 30.0%
! TTTACAATGATGGAACATCA+AGG + tig0006451:37009-37028 None:intergenic 30.0%
TTATCCTAAATTTCCCTCAT+TGG - tig0006451:37157-37176 Msa1343500:CDS 30.0%
CTGTTTATCATACCTCTAAA+TGG - tig0006451:37232-37251 Msa1343500:CDS 30.0%
TCAATAAAAAGGGGTAAAAG+AGG + tig0006451:37341-37360 None:intergenic 30.0%
CAGAAGTCTTCAATAAAAAG+GGG + tig0006451:37350-37369 None:intergenic 30.0%
CCAGAAGTCTTCAATAAAAA+GGG + tig0006451:37351-37370 None:intergenic 30.0%
ACCAGAAGTCTTCAATAAAA+AGG + tig0006451:37352-37371 None:intergenic 30.0%
!! CTTGAAAAGCTTTCACTTTT+GGG - tig0006451:37422-37441 Msa1343500:CDS 30.0%
! TTTTTCATGAAGGATTCAGA+AGG - tig0006451:37686-37705 Msa1343500:CDS 30.0%
GCTTAATTGTGCTTAACATT+GGG - tig0006451:37708-37727 Msa1343500:CDS 30.0%
TCAAGTCTTCATAACAATAC+TGG - tig0006451:37915-37934 Msa1343500:CDS 30.0%
TACATTTAGCTGAATTCTTG+AGG - tig0006451:37979-37998 Msa1343500:CDS 30.0%
TGTTACAGTTTAGATCAGTT+TGG + tig0006451:38077-38096 None:intergenic 30.0%
TTGATTTATTTATAGGCCCT+AGG + tig0006451:38208-38227 None:intergenic 30.0%
GAAAGCTCAAATATACTGTA+TGG + tig0006451:38314-38333 None:intergenic 30.0%
TCACAAGAGGTTAATGTATT+TGG - tig0006451:38482-38501 Msa1343500:intron 30.0%
CACAAGAGGTTAATGTATTT+GGG - tig0006451:38483-38502 Msa1343500:intron 30.0%
ACTGAAGAGGTAGAAAAATA+TGG + tig0006451:38760-38779 None:intergenic 30.0%
!! GACAGAAGTATTATTAGAAG+CGG - tig0006451:38969-38988 Msa1343500:intron 30.0%
TAAAATAGTTGCCCAACTTT+GGG - tig0006451:39086-39105 Msa1343500:intron 30.0%
CAAAAATGGTCCTATAAAAG+GGG + tig0006451:39127-39146 None:intergenic 30.0%
CCAAAAATGGTCCTATAAAA+GGG + tig0006451:39128-39147 None:intergenic 30.0%
ACCAAAAATGGTCCTATAAA+AGG + tig0006451:39129-39148 None:intergenic 30.0%
! TTTTCCCTCTAATCTCATTT+GGG + tig0006451:39320-39339 None:intergenic 30.0%
! TTTTTCCCTCTAATCTCATT+TGG + tig0006451:39321-39340 None:intergenic 30.0%
ATATGTTTCCTTGGAAGAAG+GGG - tig0006451:32717-32736 Msa1343500:three_prime_UTR 35.0%
TCATTCAAATCGATCGTGTT+AGG - tig0006451:32901-32920 Msa1343500:three_prime_UTR 35.0%
! GAGAGACATTGTATTGGTAT+TGG + tig0006451:32933-32952 None:intergenic 35.0%
GTTACAGATTCAACCTATGA+TGG + tig0006451:32975-32994 None:intergenic 35.0%
AGTACTGTTGCAGAATAGAA+GGG + tig0006451:33034-33053 None:intergenic 35.0%
! AAGTACTGTTGCAGAATAGA+AGG + tig0006451:33035-33054 None:intergenic 35.0%
CAATGTGCAAAAACCAAGTT+TGG - tig0006451:33545-33564 Msa1343500:intron 35.0%
ACAGTTGGTTATTCCAGAAT+GGG + tig0006451:33710-33729 None:intergenic 35.0%
GGGTAGGAAAAAAAATGGAA+GGG + tig0006451:33739-33758 None:intergenic 35.0%
AGGGTAGGAAAAAAAATGGA+AGG + tig0006451:33740-33759 None:intergenic 35.0%
AATGGACACTAGTAGTAGTA+GGG + tig0006451:33759-33778 None:intergenic 35.0%
AAATGGACACTAGTAGTAGT+AGG + tig0006451:33760-33779 None:intergenic 35.0%
ATAAAGTATGGGCAGCAAAA+TGG + tig0006451:33777-33796 None:intergenic 35.0%
!! GAGTTTTGTCATGTTCGATT+TGG - tig0006451:33929-33948 Msa1343500:intron 35.0%
! GCTTCCATTGCATCTATTTT+TGG - tig0006451:33987-34006 Msa1343500:intron 35.0%
CCATCCAAAAATAGATGCAA+TGG + tig0006451:33994-34013 None:intergenic 35.0%
!!! CCATTGCATCTATTTTTGGA+TGG - tig0006451:33991-34010 Msa1343500:intron 35.0%
AAACAGAAACAACAAGTGGA+TGG + tig0006451:34194-34213 None:intergenic 35.0%
AGTCAAACAGAAACAACAAG+TGG + tig0006451:34198-34217 None:intergenic 35.0%
!! CTAAATTTTGAGAAGGCCAT+AGG + tig0006451:34223-34242 None:intergenic 35.0%
CTATGGCCTTCTCAAAATTT+AGG - tig0006451:34221-34240 Msa1343500:intron 35.0%
!! GTTGCACCTAAATTTTGAGA+AGG + tig0006451:34230-34249 None:intergenic 35.0%
TTCGTCACAGTAAAAACAGA+AGG + tig0006451:34429-34448 None:intergenic 35.0%
! TAGGAGAGGATTTTACAAAC+GGG + tig0006451:34463-34482 None:intergenic 35.0%
! GTAGGAGAGGATTTTACAAA+CGG + tig0006451:34464-34483 None:intergenic 35.0%
TTGTAAAATCCTCTCCTACA+TGG - tig0006451:34465-34484 Msa1343500:intron 35.0%
! TTTGTGATTTGGGTTCTTTG+AGG - tig0006451:34558-34577 Msa1343500:CDS 35.0%
TCAACTTCTTTGACACAAAG+AGG + tig0006451:34599-34618 None:intergenic 35.0%
! GTTGATGAAAATCAAAAGGG+TGG - tig0006451:34614-34633 Msa1343500:intron 35.0%
CTTTCTAATCTGACTACGAA+CGG + tig0006451:34666-34685 None:intergenic 35.0%
TTCGTAGTCAGATTAGAAAG+CGG - tig0006451:34666-34685 Msa1343500:intron 35.0%
CGGCGTAACCATAATAAAAA+TGG - tig0006451:34686-34705 Msa1343500:intron 35.0%
!!! ATGCTCTACCATTTTTTGTG+GGG + tig0006451:34829-34848 None:intergenic 35.0%
!!! GATGCTCTACCATTTTTTGT+GGG + tig0006451:34830-34849 None:intergenic 35.0%
!!! TGATGCTCTACCATTTTTTG+TGG + tig0006451:34831-34850 None:intergenic 35.0%
! ACAAAAAATGGTAGAGCATC+AGG - tig0006451:34830-34849 Msa1343500:intron 35.0%
! CAAAAAATGGTAGAGCATCA+GGG - tig0006451:34831-34850 Msa1343500:intron 35.0%
!! GTATTTCTTGATTTGGCTAG+GGG + tig0006451:34873-34892 None:intergenic 35.0%
!! GTGTATTTCTTGATTTGGCT+AGG + tig0006451:34875-34894 None:intergenic 35.0%
CCAACGTGTATTTCTTGATT+TGG + tig0006451:34880-34899 None:intergenic 35.0%
CCAAATCAAGAAATACACGT+TGG - tig0006451:34877-34896 Msa1343500:intron 35.0%
!! TTGATTTGCCAAAAGATGCT+AGG - tig0006451:34900-34919 Msa1343500:intron 35.0%
! GTATTGATGAAGACCAAAAG+TGG + tig0006451:34926-34945 None:intergenic 35.0%
TTCAATCTTCTGTGAAGAGA+AGG + tig0006451:34971-34990 None:intergenic 35.0%
TATGCTACTAAATCCTGTTC+AGG - tig0006451:34991-35010 Msa1343500:intron 35.0%
AATCAAGTAATCACCTGAAC+AGG + tig0006451:35007-35026 None:intergenic 35.0%
CATGCATTCTATTGAAGTAG+TGG - tig0006451:35039-35058 Msa1343500:intron 35.0%
! GAGATTGGTTCCTATGATTT+AGG - tig0006451:35115-35134 Msa1343500:CDS 35.0%
CAAGCAAACTCCTAAATCAT+AGG + tig0006451:35128-35147 None:intergenic 35.0%
ACGAAGGATAGATTAAAGGT+TGG + tig0006451:35196-35215 None:intergenic 35.0%
CAGTACGAAGGATAGATTAA+AGG + tig0006451:35200-35219 None:intergenic 35.0%
ATATATTCAAGGCAGTACGA+AGG + tig0006451:35212-35231 None:intergenic 35.0%
!! AGATATAGTCTGTTTTGGAC+AGG - tig0006451:35252-35271 Msa1343500:intron 35.0%
TCATAATGTTAAGGCCAACA+GGG + tig0006451:35441-35460 None:intergenic 35.0%
!! GGTAATGGACTAAATGGAAA+GGG + tig0006451:35487-35506 None:intergenic 35.0%
!! TGGTAATGGACTAAATGGAA+AGG + tig0006451:35488-35507 None:intergenic 35.0%
! TCAAAACTACAGTAATGGAG+AGG - tig0006451:35581-35600 Msa1343500:CDS 35.0%
! CATTATGTGATTTGGATGAC+TGG - tig0006451:35630-35649 Msa1343500:intron 35.0%
! TTCCTGTTCTTTTCTTTGAG+AGG - tig0006451:35709-35728 Msa1343500:intron 35.0%
!! TCCTGTTCTTTTCTTTGAGA+GGG - tig0006451:35710-35729 Msa1343500:intron 35.0%
TCCTGATTGCATAAACTTGT+TGG - tig0006451:35868-35887 Msa1343500:intron 35.0%
! CCTGATTGCATAAACTTGTT+GGG - tig0006451:35869-35888 Msa1343500:intron 35.0%
ACGGTGAAAAGTCAACAAAA+AGG - tig0006451:35984-36003 Msa1343500:intron 35.0%
!! GAGCAAATGGTTGATGAAAA+TGG - tig0006451:36339-36358 Msa1343500:intron 35.0%
TTTGTATTGAGTGCTTCTCA+AGG - tig0006451:36471-36490 Msa1343500:intron 35.0%
!! TTTAGAGTATTGGTTTGTGG+TGG - tig0006451:36534-36553 Msa1343500:intron 35.0%
!! TTAGAGTATTGGTTTGTGGT+GGG - tig0006451:36535-36554 Msa1343500:intron 35.0%
! TGTGTTTTTCTATAGCATCG+AGG + tig0006451:36581-36600 None:intergenic 35.0%
ATTTGTCCAGGGTTATGAAT+TGG - tig0006451:36652-36671 Msa1343500:intron 35.0%
TTTGTCCAGGGTTATGAATT+GGG - tig0006451:36653-36672 Msa1343500:intron 35.0%
CAGTTACTATGTTAGATCGT+TGG - tig0006451:36745-36764 Msa1343500:intron 35.0%
AAATCCATGATGAACTACCT+AGG - tig0006451:36822-36841 Msa1343500:intron 35.0%
! TTTGTTTCAGTGAAGTACCT+AGG + tig0006451:36842-36861 None:intergenic 35.0%
AGAAAACAAGAGAATTGACG+TGG + tig0006451:37050-37069 None:intergenic 35.0%
!! TACATTACCATTTTTACGGC+TGG - tig0006451:37086-37105 Msa1343500:intron 35.0%
!! ACATTACCATTTTTACGGCT+GGG - tig0006451:37087-37106 Msa1343500:intron 35.0%
! TTAGGATAAGTCTGAGCTTT+TGG + tig0006451:37146-37165 None:intergenic 35.0%
AATGCCAATGAGGGAAATTT+AGG + tig0006451:37164-37183 None:intergenic 35.0%
AAATTTCCCTCATTGGCATT+AGG - tig0006451:37164-37183 Msa1343500:CDS 35.0%
AATTTCCCTCATTGGCATTA+GGG - tig0006451:37165-37184 Msa1343500:CDS 35.0%
GGTATGATAAACAGCATAAG+AGG + tig0006451:37226-37245 None:intergenic 35.0%
! CCCTTTTTATTGAAGACTTC+TGG - tig0006451:37348-37367 Msa1343500:CDS 35.0%
! GCTTGAAAAGCTTTCACTTT+TGG - tig0006451:37421-37440 Msa1343500:CDS 35.0%
GGCTTAATTGTGCTTAACAT+TGG - tig0006451:37707-37726 Msa1343500:CDS 35.0%
!! TTAATTTGTCCTCCTTTGTC+CGG - tig0006451:38175-38194 Msa1343500:five_prime_UTR 35.0%
GTTGTTAAAGCTATCACAAG+AGG - tig0006451:38469-38488 Msa1343500:intron 35.0%
!! TAATGTTTGATTTGCCCTGT+AGG - tig0006451:38556-38575 Msa1343500:intron 35.0%
CTTTCCCAGTTCAAATAGAT+GGG - tig0006451:38642-38661 Msa1343500:intron 35.0%
TTTCCCAGTTCAAATAGATG+GGG - tig0006451:38643-38662 Msa1343500:intron 35.0%
TACATAGAGTTAACTCATCG+TGG - tig0006451:38689-38708 Msa1343500:intron 35.0%
TACCTCTTCAGTTATGTGTA+CGG - tig0006451:38768-38787 Msa1343500:intron 35.0%
AAAGCTCCTAAGATTCCTAA+CGG + tig0006451:38798-38817 None:intergenic 35.0%
GCAAATTTCGCTCTTATATG+TGG - tig0006451:38851-38870 Msa1343500:intron 35.0%
ACCTGAGTATAGCAAATAAG+AGG + tig0006451:38892-38911 None:intergenic 35.0%
ATACTCAGGTATTCATGTTG+AGG - tig0006451:38902-38921 Msa1343500:intron 35.0%
ATTATTAGAAGCGGAATGCA+AGG - tig0006451:38978-38997 Msa1343500:intron 35.0%
TTATTAGAAGCGGAATGCAA+GGG - tig0006451:38979-38998 Msa1343500:intron 35.0%
TCAGAGAAAAGTTCTTCTCA+AGG - tig0006451:39017-39036 Msa1343500:intron 35.0%
CGGATCTTAAGAAAGATTGA+TGG + tig0006451:39049-39068 None:intergenic 35.0%
!! AGTTGGGCAACTATTTTAGA+AGG + tig0006451:39084-39103 None:intergenic 35.0%
CTAAAATAGTTGCCCAACTT+TGG - tig0006451:39085-39104 Msa1343500:intron 35.0%
! CCCTTTTATAGGACCATTTT+TGG - tig0006451:39125-39144 Msa1343500:intron 35.0%
! ATCTTACATTAGCTGCTTTG+TGG + tig0006451:39192-39211 None:intergenic 35.0%
AACACCCAAATGAGATTAGA+GGG - tig0006451:39313-39332 Msa1343500:five_prime_UTR 35.0%
ATGTATATGTTCATGGGTCT+TGG - tig0006451:39352-39371 Msa1343500:five_prime_UTR 35.0%
AAGTTAACAAACAGCTTCCA+AGG - tig0006451:39414-39433 Msa1343500:five_prime_UTR 35.0%
! ACGAGAGAGGAATTTTGGAT+TGG + tig0006451:32784-32803 None:intergenic 40.0%
CTCTAGATTCCATCCATCAT+AGG - tig0006451:32959-32978 Msa1343500:three_prime_UTR 40.0%
! CAGATTCAACCTATGATGGA+TGG + tig0006451:32971-32990 None:intergenic 40.0%
! TACAGTTCCTAGCTTGTAGT+AGG - tig0006451:33384-33403 Msa1343500:intron 40.0%
AATGGATCCTACTACAAGCT+AGG + tig0006451:33394-33413 None:intergenic 40.0%
! GCTTGTAGTAGGATCCATTT+TGG - tig0006451:33395-33414 Msa1343500:CDS 40.0%
! TGTAGTAGGATCCATTTTGG+AGG - tig0006451:33398-33417 Msa1343500:CDS 40.0%
!! GTAGCTTTTGACTCCAAACT+TGG + tig0006451:33561-33580 None:intergenic 40.0%
ATTCCAGAATGGGATTCACA+AGG + tig0006451:33700-33719 None:intergenic 40.0%
GACAGTTGGTTATTCCAGAA+TGG + tig0006451:33711-33730 None:intergenic 40.0%
ATGGAAGGGAATATGACAGT+TGG + tig0006451:33725-33744 None:intergenic 40.0%
!! TAGATGCAATGGAAGCATCA+GGG + tig0006451:33983-34002 None:intergenic 40.0%
!! ATAGATGCAATGGAAGCATC+AGG + tig0006451:33984-34003 None:intergenic 40.0%
!! ATTTTTGGATGGCTGATCAC+TGG - tig0006451:34002-34021 Msa1343500:intron 40.0%
CTTGAGAACAGCGTATATGA+CGG + tig0006451:34045-34064 None:intergenic 40.0%
TCATATACGCTGTTCTCAAG+TGG - tig0006451:34045-34064 Msa1343500:intron 40.0%
! CCAAACTTTCTTCTTTTCCC+TGG + tig0006451:34108-34127 None:intergenic 40.0%
CCAGGGAAAAGAAGAAAGTT+TGG - tig0006451:34105-34124 Msa1343500:intron 40.0%
! GTTTCTGTTTGACTTCCCTA+TGG - tig0006451:34204-34223 Msa1343500:intron 40.0%
TTACAGTCCTTTGCTGCATA+CGG + tig0006451:34320-34339 None:intergenic 40.0%
AGCAAAGGACTGTAAATGTG+TGG - tig0006451:34325-34344 Msa1343500:CDS 40.0%
ACACCATTGGTCAGAAAGAT+GGG - tig0006451:34373-34392 Msa1343500:CDS 40.0%
TAACCCATCTTTCTGACCAA+TGG + tig0006451:34379-34398 None:intergenic 40.0%
!! GTCAGAAAGATGGGTTAATG+TGG - tig0006451:34382-34401 Msa1343500:CDS 40.0%
CAAAGAGGAGAGAGGATAAT+TGG + tig0006451:34584-34603 None:intergenic 40.0%
CATACTAATGGTAAGTCACG+AGG - tig0006451:34719-34738 Msa1343500:intron 40.0%
CTCTTTGACCCCACAAAAAA+TGG - tig0006451:34818-34837 Msa1343500:intron 40.0%
! AAAAGTGGCCTAGCATCTTT+TGG + tig0006451:34911-34930 None:intergenic 40.0%
!! AAAAGATGCTAGGCCACTTT+TGG - tig0006451:34910-34929 Msa1343500:intron 40.0%
GTCTTCATCAATACCAGAAG+TGG - tig0006451:34932-34951 Msa1343500:intron 40.0%
TTCATCAATACCAGAAGTGG+TGG - tig0006451:34935-34954 Msa1343500:intron 40.0%
TCATCAATACCAGAAGTGGT+GGG - tig0006451:34936-34955 Msa1343500:intron 40.0%
CTCATAATGTTAAGGCCAAC+AGG + tig0006451:35442-35461 None:intergenic 40.0%
TCCCTCTCAAAGAAAAGAAC+AGG + tig0006451:35714-35733 None:intergenic 40.0%
CCCAACAAGTTTATGCAATC+AGG + tig0006451:35872-35891 None:intergenic 40.0%
CGGCTACATGGATCAAATTA+CGG - tig0006451:36261-36280 Msa1343500:intron 40.0%
! TCAATGGACATGTTCTGGTT+TGG - tig0006451:36432-36451 Msa1343500:intron 40.0%
!!! CTGGTTTGGCATTTTACTGT+AGG - tig0006451:36446-36465 Msa1343500:intron 40.0%
!! TAGAGTATTGGTTTGTGGTG+GGG - tig0006451:36536-36555 Msa1343500:intron 40.0%
TTGTCCAGGGTTATGAATTG+GGG - tig0006451:36654-36673 Msa1343500:intron 40.0%
GCTAATGTCATGCAAAAGCA+TGG + tig0006451:36718-36737 None:intergenic 40.0%
AGTACCTAGGTAGTTCATCA+TGG + tig0006451:36829-36848 None:intergenic 40.0%
AGGAATTGGATGTGATGCAA+AGG - tig0006451:36912-36931 Msa1343500:intron 40.0%
TCCTGAAAAGTTTAGTAGCC+AGG - tig0006451:36969-36988 Msa1343500:intron 40.0%
! ACCTGGCTACTAAACTTTTC+AGG + tig0006451:36973-36992 None:intergenic 40.0%
! CAATGATGGAACATCAAGGA+GGG + tig0006451:37005-37024 None:intergenic 40.0%
! ACAATGATGGAACATCAAGG+AGG + tig0006451:37006-37025 None:intergenic 40.0%
ATATTGCCCAGCCGTAAAAA+TGG + tig0006451:37096-37115 None:intergenic 40.0%
CATACCTCTAAATGGAAACC+AGG - tig0006451:37240-37259 Msa1343500:CDS 40.0%
ATCATCACTATGATCTCTCC+TGG + tig0006451:37261-37280 None:intergenic 40.0%
! GAGATCATAGTGATGATGAG+TGG - tig0006451:37264-37283 Msa1343500:CDS 40.0%
! TCATAGTGATGATGAGTGGA+TGG - tig0006451:37268-37287 Msa1343500:CDS 40.0%
AGAAGGAGCAAGAGACATTA+TGG - tig0006451:37504-37523 Msa1343500:CDS 40.0%
AAGAGACATTGAGATTCCCA+AGG - tig0006451:37576-37595 Msa1343500:CDS 40.0%
!! CAGCATCGGTAATTAACCTT+GGG + tig0006451:37595-37614 None:intergenic 40.0%
!! TCAGCATCGGTAATTAACCT+TGG + tig0006451:37596-37615 None:intergenic 40.0%
CTTAACATTGGGAGCTACAT+GGG - tig0006451:37719-37738 Msa1343500:CDS 40.0%
CTTGAGGTAGTATGTGTTTG+TGG - tig0006451:37818-37837 Msa1343500:CDS 40.0%
TAGTATGTGTTTGTGGAGCA+TGG - tig0006451:37825-37844 Msa1343500:CDS 40.0%
! TAATTTGTCCTCCTTTGTCC+GGG - tig0006451:38176-38195 Msa1343500:five_prime_UTR 40.0%
TTGTGAAAGTCCAACCTACA+GGG + tig0006451:38573-38592 None:intergenic 40.0%
TTGGACTTTCACAAGCAAGA+AGG - tig0006451:38579-38598 Msa1343500:intron 40.0%
TATTTGAACTGGGAAAGGAC+TGG + tig0006451:38639-38658 None:intergenic 40.0%
CCATCTATTTGAACTGGGAA+AGG + tig0006451:38644-38663 None:intergenic 40.0%
CCTTTCCCAGTTCAAATAGA+TGG - tig0006451:38641-38660 Msa1343500:intron 40.0%
GTTCCCCATCTATTTGAACT+GGG + tig0006451:38649-38668 None:intergenic 40.0%
GAACCATTTATCCTACAACC+AGG - tig0006451:38665-38684 Msa1343500:intron 40.0%
TAGCCTGGTTGTAGGATAAA+TGG + tig0006451:38671-38690 None:intergenic 40.0%
TGAGTTAACTCTATGTAGCC+TGG + tig0006451:38686-38705 None:intergenic 40.0%
ATCCGTACACATAACTGAAG+AGG + tig0006451:38773-38792 None:intergenic 40.0%
AAGCTCCTAAGATTCCTAAC+GGG + tig0006451:38797-38816 None:intergenic 40.0%
!! GCCTCTTATTTGCTATACTC+AGG - tig0006451:38888-38907 Msa1343500:intron 40.0%
ACTTCAGAAGATGAGCCTAA+AGG - tig0006451:38928-38947 Msa1343500:intron 40.0%
GTTGCAATATACACAGCCTA+GGG + tig0006451:39239-39258 None:intergenic 40.0%
CTCTAATCTCATTTGGGTGT+TGG + tig0006451:39314-39333 None:intergenic 40.0%
CAACACCCAAATGAGATTAG+AGG - tig0006451:39312-39331 Msa1343500:five_prime_UTR 40.0%
TTGTATACGTAGTGTGTGTG+TGG - tig0006451:39379-39398 Msa1343500:five_prime_UTR 40.0%
! CGAGAACGAGAGAGGAATTT+TGG + tig0006451:32789-32808 None:intergenic 45.0%
! TGATTAGCTAGCTAGCTCAG+AGG - tig0006451:33204-33223 Msa1343500:intron 45.0%
! GATTAGCTAGCTAGCTCAGA+GGG - tig0006451:33205-33224 Msa1343500:intron 45.0%
GACACTAGTAGTAGTAGGGT+AGG + tig0006451:33755-33774 None:intergenic 45.0%
TGGCTGATCACTGGATCATT+TGG - tig0006451:34011-34030 Msa1343500:intron 45.0%
TTCCTCTGTCGGATCATTTG+TGG - tig0006451:34141-34160 Msa1343500:intron 45.0%
TCCTCTGTCGGATCATTTGT+GGG - tig0006451:34142-34161 Msa1343500:intron 45.0%
TTGCTGCATACGGAGAACAA+AGG + tig0006451:34310-34329 None:intergenic 45.0%
TTGTTCTCCGTATGCAGCAA+AGG - tig0006451:34310-34329 Msa1343500:CDS 45.0%
GACACCATTGGTCAGAAAGA+TGG - tig0006451:34372-34391 Msa1343500:CDS 45.0%
! TTTTACTGTGACGAAGCGTG+TGG - tig0006451:34434-34453 Msa1343500:intron 45.0%
CTTTGACACAAAGAGGAGAG+AGG + tig0006451:34592-34611 None:intergenic 45.0%
AATCTGACTACGAACGGAAG+AGG + tig0006451:34660-34679 None:intergenic 45.0%
GGAGGTGGTTGTCATACTAA+TGG - tig0006451:34707-34726 Msa1343500:intron 45.0%
AAGCGGAACAAGTACAACGA+TGG - tig0006451:34791-34810 Msa1343500:intron 45.0%
AGCGGAACAAGTACAACGAT+GGG - tig0006451:34792-34811 Msa1343500:intron 45.0%
! AATGGTAGAGCATCAGGGAA+TGG - tig0006451:34836-34855 Msa1343500:intron 45.0%
! GGAAAGGGTATGAAATGGAG+AGG + tig0006451:35472-35491 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0006451:36236-36255 Msa1343500:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0006451:36237-36256 Msa1343500:intron 45.0%
CAGTCTCAATGGACATGTTC+TGG - tig0006451:36427-36446 Msa1343500:intron 45.0%
AACAATTCCAGACCTACCTC+AGG + tig0006451:36498-36517 None:intergenic 45.0%
GGAATAATTGCAACAGGTGG+AGG + tig0006451:36615-36634 None:intergenic 45.0%
AGGGGAATAATTGCAACAGG+TGG + tig0006451:36618-36637 None:intergenic 45.0%
CCTAGGGGAATAATTGCAAC+AGG + tig0006451:36621-36640 None:intergenic 45.0%
CCTGTTGCAATTATTCCCCT+AGG - tig0006451:36618-36637 Msa1343500:intron 45.0%
CTTGCAGAAGAAGACTCTGA+AGG - tig0006451:36777-36796 Msa1343500:intron 45.0%
AAGGAGGGAGAATATGTACC+TGG + tig0006451:36990-37009 None:intergenic 45.0%
TAGCACCCTAATGCCAATGA+GGG + tig0006451:37173-37192 None:intergenic 45.0%
TTAGCACCCTAATGCCAATG+AGG + tig0006451:37174-37193 None:intergenic 45.0%
CTCTCCTGGTTTCCATTTAG+AGG + tig0006451:37247-37266 None:intergenic 45.0%
GATGGCTAGCAATGTCACTA+TGG - tig0006451:37286-37305 Msa1343500:CDS 45.0%
ACTTCAAGCCATACTTGCCA+TGG + tig0006451:37550-37569 None:intergenic 45.0%
ATGGCAAGTATGGCTTGAAG+TGG - tig0006451:37549-37568 Msa1343500:CDS 45.0%
CAAGTATGGCTTGAAGTGGA+CGG - tig0006451:37553-37572 Msa1343500:CDS 45.0%
GCTTAACATTGGGAGCTACA+TGG - tig0006451:37718-37737 Msa1343500:CDS 45.0%
ACATGGGTGGAGTAGATCTT+TGG - tig0006451:37735-37754 Msa1343500:CDS 45.0%
CTCAAGCATCTTGTCATGCA+TGG + tig0006451:37804-37823 None:intergenic 45.0%
CATGCATGACAAGATGCTTG+AGG - tig0006451:37802-37821 Msa1343500:CDS 45.0%
TTTGTCCGGGTTTGAACCTA+GGG - tig0006451:38189-38208 Msa1343500:intron 45.0%
!! GTTTGATTTGCCCTGTAGGT+TGG - tig0006451:38560-38579 Msa1343500:intron 45.0%
CTTGTGAAAGTCCAACCTAC+AGG + tig0006451:38574-38593 None:intergenic 45.0%
GGTTCCCCATCTATTTGAAC+TGG + tig0006451:38650-38669 None:intergenic 45.0%
ACTCTATGTAGCCTGGTTGT+AGG + tig0006451:38679-38698 None:intergenic 45.0%
AGAGTTAACTCATCGTGGAC+AGG - tig0006451:38694-38713 Msa1343500:intron 45.0%
TATGTGTACGGATTCCCGTT+AGG - tig0006451:38780-38799 Msa1343500:intron 45.0%
GGATTCCCGTTAGGAATCTT+AGG - tig0006451:38789-38808 Msa1343500:intron 45.0%
CTCAGGTATTCATGTTGAGG+AGG - tig0006451:38905-38924 Msa1343500:intron 45.0%
ATAGCAGCTGCTTGTCCTTT+AGG + tig0006451:38946-38965 None:intergenic 45.0%
TTAGAAGGCTGAACGAGAAG+CGG + tig0006451:39069-39088 None:intergenic 45.0%
GAGCGCAAAAACCCAAAGTT+GGG + tig0006451:39100-39119 None:intergenic 45.0%
ATGGTCCTATAAAAGGGGTC+TGG + tig0006451:39122-39141 None:intergenic 45.0%
! TTAGCTGCTTTGTGGAAGTG+TGG + tig0006451:39184-39203 None:intergenic 45.0%
GGTTGCAATATACACAGCCT+AGG + tig0006451:39240-39259 None:intergenic 45.0%
AGGCTGTGTATATTGCAACC+CGG - tig0006451:39240-39259 Msa1343500:five_prime_UTR 45.0%
GTTTCCTTGGAAGAAGGGGA+AGG - tig0006451:32721-32740 Msa1343500:three_prime_UTR 50.0%
CTTGGAAGAAGGGGAAGGAA+GGG - tig0006451:32726-32745 Msa1343500:three_prime_UTR 50.0%
TTGGAAGAAGGGGAAGGAAG+GGG - tig0006451:32727-32746 Msa1343500:three_prime_UTR 50.0%
! CAGCCTTGTGAATCCCATTC+TGG - tig0006451:33694-33713 Msa1343500:intron 50.0%
AGCGACGAGCGTCTTTGAAT+TGG - tig0006451:34069-34088 Msa1343500:intron 50.0%
ATTGGATTAAAGCTGCGGCC+AGG - tig0006451:34087-34106 Msa1343500:intron 50.0%
TTGGATTAAAGCTGCGGCCA+GGG - tig0006451:34088-34107 Msa1343500:intron 50.0%
ACCCACAAATGATCCGACAG+AGG + tig0006451:34146-34165 None:intergenic 50.0%
ACAAACCGAGCAACGATGGA+GGG + tig0006451:34270-34289 None:intergenic 50.0%
GGACTGTAAATGTGTGGCTC+AGG - tig0006451:34331-34350 Msa1343500:CDS 50.0%
TGTAAATGTGTGGCTCAGGC+TGG - tig0006451:34335-34354 Msa1343500:CDS 50.0%
GTAAATGTGTGGCTCAGGCT+GGG - tig0006451:34336-34355 Msa1343500:CDS 50.0%
ACGACAATGCCATGTAGGAG+AGG + tig0006451:34477-34496 None:intergenic 50.0%
CTCCTACATGGCATTGTCGT+TGG - tig0006451:34477-34496 Msa1343500:intron 50.0%
CACCAACGACAATGCCATGT+AGG + tig0006451:34482-34501 None:intergenic 50.0%
TTGTTCAGACTGTGCCCTGT+TGG - tig0006451:35424-35443 Msa1343500:CDS 50.0%
TTCTCCTGACAATGACCCTG+TGG - tig0006451:35824-35843 Msa1343500:intron 50.0%
ATAGCCACAGGGTCATTGTC+AGG + tig0006451:35831-35850 None:intergenic 50.0%
GGACTCAAGACATAGCCACA+GGG + tig0006451:35842-35861 None:intergenic 50.0%
AGGACTCAAGACATAGCCAC+AGG + tig0006451:35843-35862 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0006451:36238-36257 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0006451:36235-36254 Msa1343500:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0006451:36241-36260 Msa1343500:intron 50.0%
!! GTATTGGTTTGTGGTGGGGA+TGG - tig0006451:36540-36559 Msa1343500:intron 50.0%
GCAATTATTCCCCTAGGCAC+TGG - tig0006451:36624-36643 Msa1343500:intron 50.0%
TCCAGGGTTATGAATTGGGG+AGG - tig0006451:36657-36676 Msa1343500:intron 50.0%
TCCTCCCCAATTCATAACCC+TGG + tig0006451:36661-36680 None:intergenic 50.0%
AGGGTTATGAATTGGGGAGG+AGG - tig0006451:36660-36679 Msa1343500:intron 50.0%
TTCTCTGCACTGGATGGACA+GGG - tig0006451:36684-36703 Msa1343500:intron 50.0%
!! GAACTTGTGCTGACTTGCCA+TGG - tig0006451:37530-37549 Msa1343500:CDS 50.0%
! CTGACTTGCCATGGCAAGTA+TGG - tig0006451:37539-37558 Msa1343500:CDS 50.0%
AACATTGGGAGCTACATGGG+TGG - tig0006451:37722-37741 Msa1343500:CDS 50.0%
CCTATACCTGAAGTTTCCCC+AGG + tig0006451:37853-37872 None:intergenic 50.0%
CCTGGGGAAACTTCAGGTAT+AGG - tig0006451:37850-37869 Msa1343500:CDS 50.0%
CTAGGTTCAAACCCGGACAA+AGG + tig0006451:38190-38209 None:intergenic 50.0%
CTTTGTCCGGGTTTGAACCT+AGG - tig0006451:38188-38207 Msa1343500:intron 50.0%
ATAGGCCCTAGGTTCAAACC+CGG + tig0006451:38197-38216 None:intergenic 50.0%
! CAAGCAAGAAGGCTAGCTCA+AGG - tig0006451:38590-38609 Msa1343500:intron 50.0%
GGAGCGCAAAAACCCAAAGT+TGG + tig0006451:39101-39120 None:intergenic 50.0%
ACTGTTGCGTCTAACACCCT+AGG - tig0006451:39220-39239 Msa1343500:five_prime_UTR 50.0%
CCTTCCTTCCCCTTCTTCCA+AGG + tig0006451:32728-32747 None:intergenic 55.0%
CCTTGGAAGAAGGGGAAGGA+AGG - tig0006451:32725-32744 Msa1343500:three_prime_UTR 55.0%
TGGAAGAAGGGGAAGGAAGG+GGG - tig0006451:32728-32747 Msa1343500:three_prime_UTR 55.0%
GAAGGAAGGGGGGTTGTAAC+AGG - tig0006451:32739-32758 Msa1343500:three_prime_UTR 55.0%
CTGAAGAGCGAGAACGAGAG+AGG + tig0006451:32797-32816 None:intergenic 55.0%
CTCTCTCGTTCTCGCTCTTC+AGG - tig0006451:32795-32814 Msa1343500:three_prime_UTR 55.0%
TAGCTAGCTAGCTCAGAGGG+TGG - tig0006451:33208-33227 Msa1343500:intron 55.0%
TACTCCCCTCCATCGTTGCT+CGG - tig0006451:34262-34281 Msa1343500:CDS 55.0%
CAAACCGAGCAACGATGGAG+GGG + tig0006451:34269-34288 None:intergenic 55.0%
CACAAACCGAGCAACGATGG+AGG + tig0006451:34271-34290 None:intergenic 55.0%
! CTCCATCGTTGCTCGGTTTG+TGG - tig0006451:34269-34288 Msa1343500:CDS 55.0%
CACCACAAACCGAGCAACGA+TGG + tig0006451:34274-34293 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0006451:36243-36262 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0006451:36249-36268 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0006451:36250-36269 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0006451:36249-36268 Msa1343500:intron 55.0%
GAGTGCTTCTCAAGGTCCTG+AGG - tig0006451:36479-36498 Msa1343500:intron 55.0%
GCTTCTCAAGGTCCTGAGGT+AGG - tig0006451:36483-36502 Msa1343500:intron 55.0%
TCAAGGTCCTGAGGTAGGTC+TGG - tig0006451:36488-36507 Msa1343500:intron 55.0%
TGGGGATGGCACTGTTGCAT+GGG - tig0006451:36554-36573 Msa1343500:intron 55.0%
CTTCTCTGCACTGGATGGAC+AGG - tig0006451:36683-36702 Msa1343500:intron 55.0%
TGTTTGTGGAGCATGGCACC+TGG - tig0006451:37832-37851 Msa1343500:CDS 55.0%
GTTTGTGGAGCATGGCACCT+GGG - tig0006451:37833-37852 Msa1343500:CDS 55.0%
TTTGTGGAGCATGGCACCTG+GGG - tig0006451:37834-37853 Msa1343500:CDS 55.0%
ATGGCACCTGGGGAAACTTC+AGG - tig0006451:37844-37863 Msa1343500:CDS 55.0%
GGTTCAAACCCGGACAAAGG+AGG + tig0006451:38187-38206 None:intergenic 55.0%
! GCGCTCCAGACCCCTTTTAT+AGG - tig0006451:39114-39133 Msa1343500:intron 55.0%
GGAAGAAGGGGAAGGAAGGG+GGG - tig0006451:32729-32748 Msa1343500:three_prime_UTR 60.0%
! ATGGAGGGGAGTACGTGGTG+AGG + tig0006451:34255-34274 None:intergenic 60.0%
! CAACGATGGAGGGGAGTACG+TGG + tig0006451:34260-34279 None:intergenic 60.0%
!! ACCAGAAGTGGTGGGCAGCT+TGG - tig0006451:34944-34963 Msa1343500:intron 60.0%
!! CCAGAAGTGGTGGGCAGCTT+GGG - tig0006451:34945-34964 Msa1343500:intron 60.0%
GTGGGGATGGCACTGTTGCA+TGG - tig0006451:36553-36572 Msa1343500:intron 60.0%
GGAGGCTTCTCTGCACTGGA+TGG - tig0006451:36678-36697 Msa1343500:intron 60.0%
TCTGCACTGGATGGACAGGG+CGG - tig0006451:36687-36706 Msa1343500:intron 60.0%
CCCAAGCTGCCCACCACTTC+TGG + tig0006451:34948-34967 None:intergenic 65.0%
GGGAGGAGGCTTCTCTGCAC+TGG - tig0006451:36674-36693 Msa1343500:intron 65.0%
CTGCACTGGATGGACAGGGC+GGG - tig0006451:36688-36707 Msa1343500:intron 65.0%
Chromosome Type Strat End Strand Name
tig0006451 gene 32651 39449 32651 ID=Msa1343500;Name=Msa1343500
tig0006451 mRNA 32651 39449 32651 ID=Msa1343500-mRNA-1;Parent=Msa1343500;Name=Msa1343500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=303|1|1|1|0.85|0.75|8|387|705
tig0006451 exon 32651 33190 32651 ID=Msa1343500-mRNA-1:exon:4186;Parent=Msa1343500-mRNA-1
tig0006451 exon 33385 33522 33385 ID=Msa1343500-mRNA-1:exon:4185;Parent=Msa1343500-mRNA-1
tig0006451 exon 34235 34402 34235 ID=Msa1343500-mRNA-1:exon:4184;Parent=Msa1343500-mRNA-1
tig0006451 exon 34503 34622 34503 ID=Msa1343500-mRNA-1:exon:4183;Parent=Msa1343500-mRNA-1
tig0006451 exon 35110 35186 35110 ID=Msa1343500-mRNA-1:exon:4182;Parent=Msa1343500-mRNA-1
tig0006451 exon 35257 35632 35257 ID=Msa1343500-mRNA-1:exon:4181;Parent=Msa1343500-mRNA-1
tig0006451 exon 37088 38204 37088 ID=Msa1343500-mRNA-1:exon:4180;Parent=Msa1343500-mRNA-1
tig0006451 exon 39178 39449 39178 ID=Msa1343500-mRNA-1:exon:4179;Parent=Msa1343500-mRNA-1
tig0006451 five_prime_UTR 39178 39449 39178 ID=Msa1343500-mRNA-1:five_prime_utr;Parent=Msa1343500-mRNA-1
tig0006451 five_prime_UTR 38174 38204 38174 ID=Msa1343500-mRNA-1:five_prime_utr;Parent=Msa1343500-mRNA-1
tig0006451 CDS 37088 38173 37088 ID=Msa1343500-mRNA-1:cds;Parent=Msa1343500-mRNA-1
tig0006451 CDS 35257 35632 35257 ID=Msa1343500-mRNA-1:cds;Parent=Msa1343500-mRNA-1
tig0006451 CDS 35110 35186 35110 ID=Msa1343500-mRNA-1:cds;Parent=Msa1343500-mRNA-1
tig0006451 CDS 34503 34622 34503 ID=Msa1343500-mRNA-1:cds;Parent=Msa1343500-mRNA-1
tig0006451 CDS 34235 34402 34235 ID=Msa1343500-mRNA-1:cds;Parent=Msa1343500-mRNA-1
tig0006451 CDS 33385 33522 33385 ID=Msa1343500-mRNA-1:cds;Parent=Msa1343500-mRNA-1
tig0006451 CDS 33038 33190 33038 ID=Msa1343500-mRNA-1:cds;Parent=Msa1343500-mRNA-1
tig0006451 three_prime_UTR 32651 33037 32651 ID=Msa1343500-mRNA-1:three_prime_utr;Parent=Msa1343500-mRNA-1
Gene Sequence

>Msa1343500

ATGAGTTTTGTCATGTTCGATTTGGGAATTGTAATTTTGAGGTTTCTTACAAGCCCTGATGCTTCCATTGCATCTATTTTTGGATGGCTGATCACTGGATCATTTGGACTTGTAGCCGTCATATACGCTGTTCTCAAGTGGCAGCGACGAGCGTCTTTGAATTGGATTAAAGCTGCGGCCAGGGAAAAGAAGAAAGTTTGGAAAAAATTTAAAGTTCCTCTGTCGGATCATTTGTGGGTTGAAGATTTTACTTATGGGGAACAACCATCCACTTGTTGTTTCTGTTTGACTTCCCTATGGCCTTCTCAAAATTTAGGTGCAACAGCCTCACCACGTACTCCCCTCCATCGTTGCTCGGTTTGTGGTGTCGCAGCTCATTTCCTTTGTTCTCCGTATGCAGCAAAGGACTGTAAATGTGTGGCTCAGGCTGGGTTTAGTCATATTAGACACCATTGGTCAGAAAGATGGGTTAATGTGGATGATCATCATGAGATGTCTGCCTTCTGTTTTTACTGTGACGAAGCGTGTGGTGTCCCGTTTGTAAAATCCTCTCCTACATGGCATTGTCGTTGGTGTCAGCGCCTCATTCATGTGAAATGTCATAACAATTTGACTAGAGATTCTGGTGATTTTTGTGATTTGGGTTCTTTGAGGCCAATTATCCTCTCTCCTCTTTGTGTCAAAGAAGTTGATGAAAATCAAAAGGGTGGAAAACTAAGTTCTATTATAACCTCTTCCGTTCGTAGTCAGATTAGAAAGCGGCGTAACCATAATAAAAATGGAGGTGGTTGTCATACTAATGGTAAGTCACGAGGTTCAGCCGTTGCTGATCCAACATTATTAGAATATGTGTTTAACAGTCTTAAGCGGAACAAGTACAACGATGGGAAGCTCTTTGACCCCACAAAAAATGGTAGAGCATCAGGGAATGGTTTAAATGTTACCCCTAGCCAAATCAAGAAATACACGTTGGTTGATTTGCCAAAAGATGCTAGGCCACTTTTGGTCTTCATCAATACCAGAAGTGGTGGGCAGCTTGGGCCTTCTCTTCACAGAAGATTGAATATGCTACTAAATCCTGTTCAGGTCTTTGTATTGAGTGCTTCTCAAGGTCCTGAGGTAGGTCTGGAATTGTTCAAAAGTGTACCATATTTTAGAGTATTGGTTTGTGGTGGGGATGGCACTGTTGCATGGGTCCTCGATGCTATAGAAAAACACAATTTTGAGTCACCTCCACCTGTTGCAATTATTCCCCTAGGCACTGGAAATGATTTGTCCAGGGTTATGAATTGGGGAGGAGGCTTCTCTGCACTGGATGGACAGGGCGGGCTGACCATGCTTTTGCATGACATTAGCATTGCAGCAGTTACTATGTTAGATCGTTGGGAAGTTAAACTTGCAGAAGAAGACTCTGAAGGAAAACCACATAAAGTGAAAACTAAATCCATGATGAACTACCTAGGAATTGGATGTGATGCAAAGGTTGCATATGAATTTCATGTTACTCGAGAGATAAATCCTGAAAAGTTTAGTAGCCAGTTTTTTAATAAATTACGATATGCAAAAGAAGGAGCAAGAGACATTATGGACAGAACTTGTGCTGACTTGCCATGGCAAGTATGGCTTGAAGTGGACGGAAGAGACATTGAGATTCCCAAGGATTCAGAAGGCTTAATTGTGCTTAACATTGGGAGCTACATGGGTGGAGTAGATCTTTGGAAAAATGACTATGAGCATGATGATGATGATTTCAGTCTTCAATCCATGCATGACAAGATGCTTGAGGTAGTATGTGTTTGTGGAGCATGGCACCTGGGGAAACTTCAGGTTGGACTTTCACAAGCAAGAAGGCTAGCTCAAGGCAAAGTCATCAAGATACACTCTTCCAGTCCTTTCCCAGTTCAAATAGATGGGGAACCATTTATCCTACAACCAGGCTACATAGAGTTAACTCATCGTGGACAGGTATTCATGTTGAGGAGGACTTCAGAAGATGAGCCTAAAGGACAAGCAGCTGCTATAATGACAGAAGTATTATTAGAAGCGGAATGCAAGGGCATTATTAATACATCTCAGAGAAAAGTTCTTCTCAAGGACATAGCCATCAATCTTTCTTAA
Protein sequence

>Msa1343500

MSFVMFDLGIVILRFLTSPDASIASIFGWLITGSFGLVAVIYAVLKWQRRASLNWIKAAAREKKKVWKKFKVPLSDHLWVEDFTYGEQPSTCCFCLTSLWPSQNLGATASPRTPLHRCSVCGVAAHFLCSPYAAKDCKCVAQAGFSHIRHHWSERWVNVDDHHEMSAFCFYCDEACGVPFVKSSPTWHCRWCQRLIHVKCHNNLTRDSGDFCDLGSLRPIILSPLCVKEVDENQKGGKLSSIITSSVRSQIRKRRNHNKNGGGCHTNGKSRGSAVADPTLLEYVFNSLKRNKYNDGKLFDPTKNGRASGNGLNVTPSQIKKYTLVDLPKDARPLLVFINTRSGGQLGPSLHRRLNMLLNPVQVFVLSASQGPEVGLELFKSVPYFRVLVCGGDGTVAWVLDAIEKHNFESPPPVAIIPLGTGNDLSRVMNWGGGFSALDGQGGLTMLLHDISIAAVTMLDRWEVKLAEEDSEGKPHKVKTKSMMNYLGIGCDAKVAYEFHVTREINPEKFSSQFFNKLRYAKEGARDIMDRTCADLPWQVWLEVDGRDIEIPKDSEGLIVLNIGSYMGGVDLWKNDYEHDDDDFSLQSMHDKMLEVVCVCGAWHLGKLQVGLSQARRLAQGKVIKIHSSSPFPVQIDGEPFILQPGYIELTHRGQVFMLRRTSEDEPKGQAAAIMTEVLLEAECKGIINTSQRKVLLKDIAINLS*