Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571190 | XP_013447001.1 | 67.476 | 206 | 27 | 3 | 1 | 205 | 1 | 167 | 1.97e-86 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571190 | sp|P50700|OSL3_ARATH | 44.393 | 214 | 101 | 2 | 1 | 201 | 1 | 209 | 2.75e-51 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571190 | A0A072TVX9 | 67.476 | 206 | 27 | 3 | 1 | 205 | 1 | 167 | 9.43e-87 | 268 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0570250 | Msa0571190 | 0.855187 | 7.462892e-62 | -8.615850e-47 |
| Msa0570490 | Msa0571190 | 0.800948 | 1.134171e-48 | -8.615850e-47 |
| Msa0570770 | Msa0571190 | 0.839370 | 1.649827e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571190 | MtrunA17_Chr8g0386351 | 67.476 | 206 | 27 | 3 | 1 | 205 | 43 | 209 | 1.98e-90 | 270 |
| Msa0571190 | MtrunA17_Chr8g0386341 | 45.495 | 222 | 93 | 5 | 2 | 205 | 28 | 239 | 8.22e-53 | 174 |
| Msa0571190 | MtrunA17_Chr5g0397821 | 46.040 | 202 | 89 | 5 | 20 | 206 | 21 | 217 | 1.70e-45 | 155 |
| Msa0571190 | MtrunA17_Chr5g0397831 | 44.186 | 172 | 79 | 2 | 4 | 158 | 3 | 174 | 1.08e-44 | 153 |
| Msa0571190 | MtrunA17_Chr5g0424221 | 34.137 | 249 | 134 | 10 | 3 | 234 | 8 | 243 | 1.38e-29 | 114 |
| Msa0571190 | MtrunA17_Chr5g0428801 | 45.865 | 133 | 61 | 4 | 6 | 129 | 10 | 140 | 4.92e-29 | 114 |
| Msa0571190 | MtrunA17_Chr2g0311531 | 38.071 | 197 | 95 | 8 | 22 | 202 | 26 | 211 | 1.76e-28 | 110 |
| Msa0571190 | MtrunA17_Chr3g0142781 | 34.742 | 213 | 116 | 8 | 1 | 198 | 4 | 208 | 1.03e-25 | 105 |
| Msa0571190 | MtrunA17_Chr8g0352471 | 33.010 | 206 | 118 | 6 | 6 | 198 | 9 | 207 | 1.04e-25 | 105 |
| Msa0571190 | MtrunA17_Chr8g0392961 | 45.217 | 115 | 51 | 4 | 27 | 132 | 31 | 142 | 1.05e-25 | 103 |
| Msa0571190 | MtrunA17_Chr1g0156711 | 33.175 | 211 | 128 | 5 | 1 | 201 | 1 | 208 | 1.52e-25 | 104 |
| Msa0571190 | MtrunA17_Chr4g0037351 | 39.490 | 157 | 81 | 6 | 8 | 153 | 9 | 162 | 1.71e-25 | 104 |
| Msa0571190 | MtrunA17_Chr1g0154591 | 42.969 | 128 | 62 | 3 | 20 | 137 | 10 | 136 | 8.21e-25 | 100 |
| Msa0571190 | MtrunA17_Chr6g0482741 | 37.410 | 139 | 72 | 5 | 6 | 132 | 2 | 137 | 1.00e-24 | 100 |
| Msa0571190 | MtrunA17_Chr8g0351851 | 29.362 | 235 | 148 | 7 | 1 | 226 | 1 | 226 | 1.41e-24 | 100 |
| Msa0571190 | MtrunA17_Chr8g0371771 | 38.462 | 143 | 76 | 6 | 18 | 153 | 26 | 163 | 2.27e-24 | 101 |
| Msa0571190 | MtrunA17_Chr8g0371781 | 45.763 | 118 | 53 | 4 | 22 | 129 | 27 | 143 | 2.31e-24 | 101 |
| Msa0571190 | MtrunA17_Chr5g0405581 | 33.010 | 206 | 122 | 7 | 6 | 198 | 9 | 211 | 1.60e-23 | 98.6 |
| Msa0571190 | MtrunA17_Chr5g0405611 | 31.707 | 246 | 132 | 12 | 8 | 224 | 83 | 321 | 1.73e-23 | 100 |
| Msa0571190 | MtrunA17_Chr3g0141341 | 41.270 | 126 | 66 | 4 | 20 | 137 | 9 | 134 | 1.80e-23 | 97.1 |
| Msa0571190 | MtrunA17_Chr8g0357311 | 31.250 | 208 | 123 | 6 | 4 | 198 | 7 | 207 | 2.34e-23 | 97.4 |
| Msa0571190 | MtrunA17_Chr7g0239131 | 33.010 | 206 | 115 | 7 | 7 | 198 | 6 | 202 | 2.36e-23 | 97.1 |
| Msa0571190 | MtrunA17_Chr2g0311561 | 38.125 | 160 | 81 | 6 | 20 | 162 | 8 | 166 | 1.11e-22 | 96.3 |
| Msa0571190 | MtrunA17_Chr4g0037331 | 37.349 | 166 | 85 | 8 | 1 | 153 | 1 | 160 | 1.88e-22 | 96.7 |
| Msa0571190 | MtrunA17_Chr6g0452331 | 35.088 | 171 | 98 | 6 | 17 | 176 | 23 | 191 | 2.70e-22 | 94.7 |
| Msa0571190 | MtrunA17_Chr7g0265011 | 39.855 | 138 | 65 | 6 | 8 | 129 | 46 | 181 | 4.07e-22 | 94.7 |
| Msa0571190 | MtrunA17_Chr2g0311521 | 40.288 | 139 | 67 | 6 | 8 | 131 | 8 | 145 | 6.86e-22 | 97.1 |
| Msa0571190 | MtrunA17_Chr3g0112091 | 40.323 | 124 | 62 | 5 | 20 | 132 | 14 | 136 | 1.54e-21 | 92.0 |
| Msa0571190 | MtrunA17_Chr1g0180231 | 38.732 | 142 | 74 | 6 | 1 | 132 | 1 | 139 | 1.80e-21 | 91.7 |
| Msa0571190 | MtrunA17_Chr1g0179871 | 38.732 | 142 | 74 | 6 | 1 | 132 | 1 | 139 | 1.80e-21 | 91.7 |
| Msa0571190 | MtrunA17_Chr2g0312181 | 37.681 | 138 | 77 | 3 | 4 | 132 | 3 | 140 | 8.22e-21 | 90.1 |
| Msa0571190 | MtrunA17_Chr8g0386361 | 73.684 | 57 | 10 | 2 | 1 | 56 | 1 | 53 | 1.44e-20 | 85.9 |
| Msa0571190 | MtrunA17_Chr8g0386361 | 75.000 | 36 | 9 | 0 | 169 | 204 | 73 | 108 | 2.72e-12 | 63.2 |
| Msa0571190 | MtrunA17_Chr1g0179891 | 37.313 | 134 | 72 | 5 | 9 | 132 | 3 | 134 | 1.39e-19 | 86.7 |
| Msa0571190 | MtrunA17_Chr4g0031221 | 39.062 | 128 | 67 | 4 | 12 | 129 | 18 | 144 | 2.51e-19 | 86.3 |
| Msa0571190 | MtrunA17_Chr1g0179851 | 40.678 | 118 | 58 | 5 | 22 | 129 | 18 | 133 | 4.27e-19 | 85.1 |
| Msa0571190 | MtrunA17_Chr1g0180121 | 35.971 | 139 | 76 | 6 | 1 | 129 | 1 | 136 | 4.48e-19 | 85.1 |
| Msa0571190 | MtrunA17_Chr1g0180221 | 36.170 | 141 | 76 | 6 | 1 | 129 | 38 | 176 | 2.37e-18 | 84.0 |
| Msa0571190 | MtrunA17_Chr2g0311551 | 40.496 | 121 | 59 | 5 | 22 | 130 | 22 | 141 | 4.02e-18 | 85.9 |
| Msa0571190 | MtrunA17_Chr1g0180161 | 34.532 | 139 | 78 | 6 | 1 | 129 | 1 | 136 | 5.79e-18 | 82.4 |
| Msa0571190 | MtrunA17_Chr5g0406771 | 36.154 | 130 | 72 | 4 | 13 | 131 | 3 | 132 | 8.31e-18 | 80.1 |
| Msa0571190 | MtrunA17_Chr2g0311501 | 36.735 | 98 | 58 | 4 | 61 | 155 | 5 | 101 | 5.06e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571190 | AT4G11650.1 | 44.393 | 214 | 101 | 2 | 1 | 201 | 1 | 209 | 2.79e-52 | 173 |
| Msa0571190 | AT1G77700.3 | 46.617 | 133 | 60 | 4 | 8 | 135 | 46 | 172 | 7.53e-31 | 119 |
| Msa0571190 | AT1G77700.2 | 46.617 | 133 | 60 | 4 | 8 | 135 | 46 | 172 | 1.51e-30 | 118 |
| Msa0571190 | AT1G77700.1 | 49.180 | 122 | 51 | 4 | 19 | 135 | 85 | 200 | 2.90e-30 | 118 |
| Msa0571190 | AT1G75050.1 | 43.411 | 129 | 65 | 2 | 8 | 129 | 10 | 137 | 1.50e-27 | 108 |
| Msa0571190 | AT1G75030.1 | 40.000 | 135 | 72 | 3 | 3 | 129 | 4 | 137 | 1.53e-26 | 105 |
| Msa0571190 | AT1G75800.1 | 33.649 | 211 | 118 | 8 | 4 | 198 | 3 | 207 | 3.19e-26 | 107 |
| Msa0571190 | AT1G73620.1 | 32.751 | 229 | 122 | 10 | 20 | 227 | 39 | 256 | 2.17e-25 | 103 |
| Msa0571190 | AT1G18250.1 | 44.915 | 118 | 55 | 3 | 20 | 129 | 18 | 133 | 2.76e-25 | 102 |
| Msa0571190 | AT4G36010.1 | 50.000 | 116 | 46 | 5 | 25 | 129 | 25 | 139 | 2.90e-25 | 103 |
| Msa0571190 | AT4G36010.2 | 50.000 | 116 | 46 | 5 | 25 | 129 | 25 | 139 | 2.90e-25 | 103 |
| Msa0571190 | AT1G18250.2 | 43.697 | 119 | 57 | 3 | 19 | 129 | 18 | 134 | 7.44e-25 | 101 |
| Msa0571190 | AT2G17860.1 | 42.857 | 140 | 68 | 5 | 1 | 129 | 1 | 139 | 8.44e-25 | 101 |
| Msa0571190 | AT5G24620.1 | 41.985 | 131 | 65 | 4 | 9 | 129 | 11 | 140 | 1.00e-24 | 104 |
| Msa0571190 | AT5G24620.4 | 41.985 | 131 | 65 | 4 | 9 | 129 | 66 | 195 | 1.08e-24 | 104 |
| Msa0571190 | AT5G24620.3 | 41.985 | 131 | 65 | 4 | 9 | 129 | 87 | 216 | 1.25e-24 | 104 |
| Msa0571190 | AT4G38660.1 | 37.975 | 158 | 83 | 7 | 6 | 153 | 13 | 165 | 2.06e-24 | 102 |
| Msa0571190 | AT1G75040.1 | 39.259 | 135 | 73 | 3 | 2 | 129 | 3 | 135 | 8.75e-24 | 98.6 |
| Msa0571190 | AT5G40020.1 | 30.213 | 235 | 138 | 8 | 2 | 215 | 7 | 236 | 9.59e-24 | 98.6 |
| Msa0571190 | AT4G38660.2 | 40.136 | 147 | 73 | 7 | 17 | 153 | 2 | 143 | 1.56e-23 | 99.4 |
| Msa0571190 | AT4G38670.3 | 40.714 | 140 | 70 | 6 | 1 | 129 | 2 | 139 | 2.75e-22 | 95.1 |
| Msa0571190 | AT4G38670.1 | 40.714 | 140 | 70 | 6 | 1 | 129 | 2 | 139 | 2.75e-22 | 95.1 |
| Msa0571190 | AT5G02140.2 | 39.568 | 139 | 66 | 6 | 2 | 129 | 6 | 137 | 2.99e-22 | 94.4 |
| Msa0571190 | AT1G19320.1 | 37.500 | 144 | 70 | 6 | 3 | 132 | 9 | 146 | 3.20e-22 | 94.4 |
| Msa0571190 | AT5G02140.1 | 39.568 | 139 | 66 | 6 | 2 | 129 | 6 | 137 | 4.17e-22 | 95.1 |
| Msa0571190 | AT1G20030.2 | 32.719 | 217 | 123 | 8 | 25 | 225 | 22 | 231 | 6.01e-22 | 95.1 |
| Msa0571190 | AT1G20030.1 | 32.719 | 217 | 123 | 8 | 25 | 225 | 5 | 214 | 6.09e-22 | 94.7 |
| Msa0571190 | AT5G38280.1 | 39.259 | 135 | 70 | 5 | 6 | 129 | 7 | 140 | 6.96e-22 | 97.1 |
| Msa0571190 | AT5G38280.2 | 39.259 | 135 | 70 | 5 | 6 | 129 | 7 | 140 | 7.41e-22 | 97.1 |
| Msa0571190 | AT4G38670.2 | 41.935 | 124 | 60 | 5 | 17 | 129 | 1 | 123 | 2.79e-21 | 92.0 |
| Msa0571190 | AT4G24180.6 | 29.577 | 213 | 110 | 8 | 10 | 198 | 20 | 216 | 3.42e-21 | 91.7 |
| Msa0571190 | AT4G24180.3 | 36.111 | 144 | 59 | 6 | 10 | 129 | 20 | 154 | 5.67e-21 | 92.4 |
| Msa0571190 | AT4G24180.1 | 36.111 | 144 | 59 | 6 | 10 | 129 | 20 | 154 | 1.09e-20 | 91.3 |
| Msa0571190 | AT4G24180.5 | 29.302 | 215 | 110 | 9 | 8 | 198 | 15 | 211 | 6.86e-20 | 88.2 |
| Msa0571190 | AT2G28790.2 | 37.931 | 145 | 72 | 5 | 2 | 129 | 25 | 168 | 8.97e-20 | 88.2 |
| Msa0571190 | AT4G24180.4 | 35.616 | 146 | 59 | 7 | 8 | 129 | 15 | 149 | 1.24e-19 | 88.6 |
| Msa0571190 | AT2G28790.1 | 38.194 | 144 | 71 | 5 | 3 | 129 | 1 | 143 | 1.65e-19 | 87.0 |
| Msa0571190 | AT4G24180.2 | 35.616 | 146 | 59 | 7 | 8 | 129 | 15 | 149 | 1.73e-19 | 87.8 |
| Msa0571190 | AT1G70250.1 | 35.714 | 112 | 63 | 4 | 25 | 129 | 147 | 256 | 2.27e-13 | 71.6 |
Find 86 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTAATGGTGGAAACAATT+TGG | 0.186661 | 4_1:-73741609 | Msa0571190:CDS |
| GAACATCATCAGGACGAATT+TGG | 0.191722 | 4_1:-73741751 | Msa0571190:CDS |
| CAATGGCTGCAACAACAATT+TGG | 0.283897 | 4_1:-73741495 | Msa0571190:CDS |
| CTTGCCGAATACACACTTAA+TGG | 0.300034 | 4_1:-73741623 | Msa0571190:CDS |
| AACATCATCAGGACGAATTT+GGG | 0.304200 | 4_1:-73741750 | Msa0571190:CDS |
| TCCACCATTAAGTGTGTATT+CGG | 0.323800 | 4_1:+73741619 | None:intergenic |
| ATTGATGTATCTTTGATTGA+TGG | 0.329561 | 4_1:-73741467 | Msa0571190:CDS |
| GCCCTCAGTTGCAGCTTATC+AGG | 0.333283 | 4_1:-73741662 | Msa0571190:CDS |
| GGTTGTCGTTTCGACAATTC+AGG | 0.333834 | 4_1:-73741719 | Msa0571190:CDS |
| AAATTGTTGTTGCAGCCATT+GGG | 0.346723 | 4_1:+73741497 | None:intergenic |
| ATGAGCTGGCAAATGGTAAT+TGG | 0.362148 | 4_1:-73739048 | Msa0571190:CDS |
| TTTGATATATCTGTAATTGA+TGG | 0.362969 | 4_1:-73741581 | Msa0571190:CDS |
| CAAATTGTTGTTGCAGCCAT+TGG | 0.368280 | 4_1:+73741496 | None:intergenic |
| GGACGAATTTGGGGCCGATC+AGG | 0.419497 | 4_1:-73741740 | Msa0571190:CDS |
| TGGTCCATTGACGTCGCTGC+TGG | 0.438296 | 4_1:-73741773 | Msa0571190:CDS |
| CTGCCGACCTCCGCCTGGTA+TGG | 0.442970 | 4_1:+73741814 | None:intergenic |
| AAAGCTGCAACATGGTAACT+TGG | 0.444646 | 4_1:+73737181 | None:intergenic |
| GAAAACACAGCTGTTGGGAT+TGG | 0.450587 | 4_1:+73741180 | None:intergenic |
| CTAAATTGCATTGAAGTGTT+GGG | 0.451005 | 4_1:+73741527 | None:intergenic |
| TGCGGAATCAACCACTTTGG+CGG | 0.470235 | 4_1:-73741157 | Msa0571190:CDS |
| TCACGATATGAGCTGGCAAA+TGG | 0.476186 | 4_1:-73739055 | Msa0571190:CDS |
| GTCTGGCCAGCGGCCATACC+AGG | 0.479006 | 4_1:-73741827 | Msa0571190:CDS |
| GGCCGTGGTAGTTGTCAAAC+CGG | 0.480258 | 4_1:-73741698 | Msa0571190:CDS |
| CCGCAGAAAACACAGCTGTT+GGG | 0.482743 | 4_1:+73741175 | None:intergenic |
| TCCGCAGAAAACACAGCTGT+TGG | 0.488206 | 4_1:+73741174 | None:intergenic |
| GGGGTTGAACTAAATTGCAT+TGG | 0.488757 | 4_1:+73741548 | None:intergenic |
| ATATATGGTGGAAGGTGTCT+TGG | 0.496015 | 4_1:-73737361 | Msa0571190:CDS |
| TGGTATGGCCGCTGGCCAGA+CGG | 0.499890 | 4_1:+73741829 | None:intergenic |
| GTCGCTGCTGGAACATCATC+AGG | 0.501576 | 4_1:-73741761 | Msa0571190:CDS |
| ACTAAATTGCATTGAAGTGT+TGG | 0.503761 | 4_1:+73741526 | None:intergenic |
| ACGAATGTTCCTACACCGTC+TGG | 0.506701 | 4_1:-73741844 | Msa0571190:CDS |
| GCTCATATCGTGAAAATGTC+GGG | 0.507732 | 4_1:+73739065 | None:intergenic |
| TCCAACTGCCGACCTCCGCC+TGG | 0.510908 | 4_1:+73741809 | None:intergenic |
| GATTGGTGGTGTAGCGGAGA+AGG | 0.512006 | 4_1:+73741197 | None:intergenic |
| AAAAGCAGCAAAAGTGACTC+TGG | 0.513034 | 4_1:+73737212 | None:intergenic |
| CCTCCGCCTGGTATGGCCGC+TGG | 0.517645 | 4_1:+73741821 | None:intergenic |
| AATTGTTGTTGCAGCCATTG+GGG | 0.522078 | 4_1:+73741498 | None:intergenic |
| ACCAGGCGGAGGTCGGCAGT+TGG | 0.533130 | 4_1:-73741810 | Msa0571190:CDS |
| TAAATTGCATTGAAGTGTTG+GGG | 0.533389 | 4_1:+73741528 | None:intergenic |
| TTCTGCGGAATCAACCACTT+TGG | 0.535133 | 4_1:-73741160 | Msa0571190:CDS |
| TGTTCCAGCAGCGACGTCAA+TGG | 0.535856 | 4_1:+73741769 | None:intergenic |
| AACACAGCTGTTGGGATTGG+TGG | 0.536868 | 4_1:+73741183 | None:intergenic |
| GAGGGCACCACCGCAATCAC+CGG | 0.541371 | 4_1:+73741679 | None:intergenic |
| TACCTGATAAGCTGCAACTG+AGG | 0.544615 | 4_1:+73741660 | None:intergenic |
| AGTGACTCTGGAGGGTGGCA+CGG | 0.549659 | 4_1:+73737224 | None:intergenic |
| GTTAAAACTGTTACATGTCC+CGG | 0.549846 | 4_1:-73741341 | Msa0571190:CDS |
| CGTTTCGACAATTCAGGCCG+TGG | 0.551961 | 4_1:-73741713 | Msa0571190:CDS |
| GTGTATTCGGCAAGTGTGAT+CGG | 0.554160 | 4_1:+73741632 | None:intergenic |
| GGCACGGCCGTGCCACATGT+TGG | 0.557392 | 4_1:+73737240 | None:intergenic |
| TACTTTGTTGCATACATCAG+AGG | 0.558852 | 4_1:+73741415 | None:intergenic |
| CAACAAAGTACTAAACTGCA+TGG | 0.571869 | 4_1:-73741402 | Msa0571190:CDS |
| AGCTCATATCGTGAAAATGT+CGG | 0.573525 | 4_1:+73739064 | None:intergenic |
| TGTCGAAACGACAACCTGAT+CGG | 0.577257 | 4_1:+73741726 | None:intergenic |
| CGGCCATACCAGGCGGAGGT+CGG | 0.578735 | 4_1:-73741817 | Msa0571190:CDS |
| TTCCTACACCGTCTGGCCAG+CGG | 0.580783 | 4_1:-73741837 | Msa0571190:CDS |
| AAGCTGCAACATGGTAACTT+GGG | 0.588122 | 4_1:+73737182 | None:intergenic |
| TGTCTTGGAGCAAAAGAAAG+AGG | 0.588846 | 4_1:-73737346 | Msa0571190:CDS |
| CCAGCGGCCATACCAGGCGG+AGG | 0.591443 | 4_1:-73741821 | Msa0571190:CDS |
| AGGAACGAATATATGGTGGA+AGG | 0.599653 | 4_1:-73737369 | Msa0571190:CDS |
| TCTCTACCAAGTCAGAAGCT+TGG | 0.600115 | 4_1:-73737274 | Msa0571190:CDS |
| ACCTGATAAGCTGCAACTGA+GGG | 0.600649 | 4_1:+73741661 | None:intergenic |
| TGGAGCAAAAGAAAGAGGAC+TGG | 0.601219 | 4_1:-73737341 | Msa0571190:CDS |
| AGTTGGACAGTGGCAAAACA+TGG | 0.608478 | 4_1:-73741793 | Msa0571190:CDS |
| GGCCGCTGGCCAGACGGTGT+AGG | 0.621284 | 4_1:+73741835 | None:intergenic |
| ATTGTTGTTGCAGCCATTGG+GGG | 0.624229 | 4_1:+73741499 | None:intergenic |
| GCCGTGCCAAGCTTCTGACT+TGG | 0.627522 | 4_1:+73737268 | None:intergenic |
| TGGTGGTGTAGCGGAGAAGG+CGG | 0.630758 | 4_1:+73741200 | None:intergenic |
| ACCAAGTCAGAAGCTTGGCA+CGG | 0.631803 | 4_1:-73737269 | Msa0571190:CDS |
| GCAGCAAAAGTGACTCTGGA+GGG | 0.635350 | 4_1:+73737216 | None:intergenic |
| GCAAAAGTGACTCTGGAGGG+TGG | 0.648299 | 4_1:+73737219 | None:intergenic |
| GTTGGGTTGATGATAAGCAT+CGG | 0.648766 | 4_1:+73741367 | None:intergenic |
| GCCGAATACACACTTAATGG+TGG | 0.649752 | 4_1:-73741620 | Msa0571190:CDS |
| GCACGGCTAGTGCCAACATG+TGG | 0.653810 | 4_1:-73737252 | Msa0571190:CDS |
| ACATCATCAGGACGAATTTG+GGG | 0.655310 | 4_1:-73741749 | Msa0571190:CDS |
| AAATCAGTAAAGCTGCAACA+TGG | 0.657188 | 4_1:+73737173 | None:intergenic |
| GTAACATACAACCGCCAAAG+TGG | 0.657809 | 4_1:+73741146 | None:intergenic |
| GCTAGTGCCAACATGTGGCA+CGG | 0.658904 | 4_1:-73737247 | Msa0571190:CDS |
| TGTTGGGATTGGTGGTGTAG+CGG | 0.659240 | 4_1:+73741191 | None:intergenic |
| GGAGGTCGGCAGTTGGACAG+TGG | 0.660752 | 4_1:-73741803 | Msa0571190:CDS |
| AGCAGCAAAAGTGACTCTGG+AGG | 0.665988 | 4_1:+73737215 | None:intergenic |
| CACCGGTTTGACAACTACCA+CGG | 0.669452 | 4_1:+73741696 | None:intergenic |
| AGTTGTCAAACCGGTGATTG+CGG | 0.672636 | 4_1:-73741689 | Msa0571190:CDS |
| TGTCAAACCGGTGATTGCGG+TGG | 0.678969 | 4_1:-73741686 | Msa0571190:CDS |
| TGGCCAGCGGCCATACCAGG+CGG | 0.687968 | 4_1:-73741824 | Msa0571190:CDS |
| AAATTGCATTGAAGTGTTGG+GGG | 0.696220 | 4_1:+73741529 | None:intergenic |
| AAAACTGTTACATGTCCCGG+TGG | 0.730785 | 4_1:-73741338 | Msa0571190:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAGTAGAAT+CGG | - | chr4_1:73738090-73738109 | Msa0571190:intron | 10.0% |
| !! | TAAATGATAAAATTGTAAAA+GGG | + | chr4_1:73739265-73739284 | None:intergenic | 10.0% |
| !! | TTAAATGATAAAATTGTAAA+AGG | + | chr4_1:73739266-73739285 | None:intergenic | 10.0% |
| !! | GAAAAATATGTATATATAAT+AGG | - | chr4_1:73739473-73739492 | Msa0571190:intron | 10.0% |
| !! | AAAATATGTATATATAATAG+GGG | - | chr4_1:73739475-73739494 | Msa0571190:intron | 10.0% |
| !! | AAGTTAATAGTATTAATTAA+GGG | - | chr4_1:73741161-73741180 | Msa0571190:CDS | 10.0% |
| !! | TTAAAGTAAAATATTCAAAA+AGG | + | chr4_1:73741649-73741668 | None:intergenic | 10.0% |
| !!! | ATTGCTTTTTATTTTATTTT+AGG | - | chr4_1:73741669-73741688 | Msa0571190:CDS | 10.0% |
| !! | TTTCTTAACATATATCAAAA+AGG | + | chr4_1:73738597-73738616 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr4_1:73738741-73738760 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr4_1:73738844-73738863 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr4_1:73738868-73738887 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr4_1:73738867-73738886 | Msa0571190:intron | 15.0% |
| !! | CAAATATAGAAAAAACTTAT+TGG | - | chr4_1:73739122-73739141 | Msa0571190:intron | 15.0% |
| !! | AAAGAAATAATTAATAGAGT+TGG | - | chr4_1:73739508-73739527 | Msa0571190:intron | 15.0% |
| !! | AAAGAAAGAAAGAAAAAAAA+AGG | + | chr4_1:73740140-73740159 | None:intergenic | 15.0% |
| !! | ATATTTGATGAAAATATAGT+GGG | + | chr4_1:73740199-73740218 | None:intergenic | 15.0% |
| !! | TATATTTGATGAAAATATAG+TGG | + | chr4_1:73740200-73740219 | None:intergenic | 15.0% |
| !!! | TGGTACAATTTTTTTATTAA+CGG | + | chr4_1:73740607-73740626 | None:intergenic | 15.0% |
| !! | AAATCACTTATTTCAATAAA+AGG | - | chr4_1:73740929-73740948 | Msa0571190:intron | 15.0% |
| !! | AATCACTTATTTCAATAAAA+GGG | - | chr4_1:73740930-73740949 | Msa0571190:intron | 15.0% |
| !!! | TTAATACTATTAACTTGTAT+TGG | + | chr4_1:73741157-73741176 | None:intergenic | 15.0% |
| !! | CAAGTTAATAGTATTAATTA+AGG | - | chr4_1:73741160-73741179 | Msa0571190:CDS | 15.0% |
| !! | TAATTAAACTCTTAACAAAA+AGG | - | chr4_1:73741530-73741549 | Msa0571190:CDS | 15.0% |
| !! | AATTAAACTCTTAACAAAAA+GGG | - | chr4_1:73741531-73741550 | Msa0571190:CDS | 15.0% |
| !! | TTTGATATATCTGTAATTGA+TGG | - | chr4_1:73737477-73737496 | Msa0571190:intron | 20.0% |
| !! | TAGGTACAATAATATTTCAA+GGG | + | chr4_1:73737770-73737789 | None:intergenic | 20.0% |
| !! | ATAGGTACAATAATATTTCA+AGG | + | chr4_1:73737771-73737790 | None:intergenic | 20.0% |
| !! | ATATTAGAAAACATAATAGG+TGG | + | chr4_1:73737805-73737824 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGACAGAGTAA+AGG | + | chr4_1:73738080-73738099 | None:intergenic | 20.0% |
| !! | AGATTATGAACATAAATAGT+TGG | + | chr4_1:73738206-73738225 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr4_1:73738781-73738800 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr4_1:73738858-73738877 | Msa0571190:intron | 20.0% |
| !!! | AATCACTTTTGTTTTTACAA+TGG | - | chr4_1:73739059-73739078 | Msa0571190:CDS | 20.0% |
| !!! | ATCACTTTTGTTTTTACAAT+GGG | - | chr4_1:73739060-73739079 | Msa0571190:CDS | 20.0% |
| !! | GCAAAAATGTCTTATAATAA+AGG | - | chr4_1:73739538-73739557 | Msa0571190:intron | 20.0% |
| !!! | ACATCTAGTAATTTGTATAA+AGG | - | chr4_1:73741203-73741222 | Msa0571190:CDS | 20.0% |
| !! | TGTATAAAGGCTTATATTTA+AGG | - | chr4_1:73741216-73741235 | Msa0571190:intron | 20.0% |
| !! | TTCAAAGAGGATTTATAATA+AGG | - | chr4_1:73741251-73741270 | Msa0571190:intron | 20.0% |
| !! | TCAAAGAGGATTTATAATAA+GGG | - | chr4_1:73741252-73741271 | Msa0571190:intron | 20.0% |
| !! | ATAAATAGATGTATGTGTAA+AGG | - | chr4_1:73741302-73741321 | Msa0571190:intron | 20.0% |
| !!! | AAGACATAGTTTCTTTTTTT+GGG | - | chr4_1:73741434-73741453 | Msa0571190:CDS | 20.0% |
| !!! | TGTTAAGTTATTTTACACAT+GGG | + | chr4_1:73741498-73741517 | None:intergenic | 20.0% |
| !!! | TTATTTTAGGAACGAATATA+TGG | - | chr4_1:73741682-73741701 | Msa0571190:CDS | 20.0% |
| !! | TAAAAACTAAGCAACTAAAA+GGG | + | chr4_1:73741912-73741931 | None:intergenic | 20.0% |
| !! | TTAAAAACTAAGCAACTAAA+AGG | + | chr4_1:73741913-73741932 | None:intergenic | 20.0% |
| ! | ATTGATGTATCTTTGATTGA+TGG | - | chr4_1:73737591-73737610 | Msa0571190:intron | 25.0% |
| ! | TAGGTGGAGTTATATTATAT+AGG | + | chr4_1:73737789-73737808 | None:intergenic | 25.0% |
| ! | CGCATATTAGAAAACATAAT+AGG | + | chr4_1:73737808-73737827 | None:intergenic | 25.0% |
| ! | TAATATGCGCAAACAAATAA+CGG | - | chr4_1:73737819-73737838 | Msa0571190:intron | 25.0% |
| ! | TCTACTTAAATACACCAAAT+CGG | + | chr4_1:73738055-73738074 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAGTAGAATCGG+AGG | - | chr4_1:73738093-73738112 | Msa0571190:intron | 25.0% |
| ! | CAAGTGTATACAAATTTGTA+GGG | + | chr4_1:73738172-73738191 | None:intergenic | 25.0% |
| ! | TATGAACATAAATAGTTGGA+GGG | + | chr4_1:73738202-73738221 | None:intergenic | 25.0% |
| ! | TTATGAACATAAATAGTTGG+AGG | + | chr4_1:73738203-73738222 | None:intergenic | 25.0% |
| !!! | TTTTTTAAGAAGTTAGCCTT+AGG | - | chr4_1:73738662-73738681 | Msa0571190:intron | 25.0% |
| !!! | TTTTTAAGAAGTTAGCCTTA+GGG | - | chr4_1:73738663-73738682 | Msa0571190:intron | 25.0% |
| !!! | GAACATTTTTGGTAAAATCA+CGG | - | chr4_1:73738998-73739017 | Msa0571190:intron | 25.0% |
| !!! | AACATTTTTGGTAAAATCAC+GGG | - | chr4_1:73738999-73739018 | Msa0571190:intron | 25.0% |
| !! | TAGAGAAAGTTTCTTCTTTT+AGG | - | chr4_1:73739201-73739220 | Msa0571190:intron | 25.0% |
| ! | AAAGATCTTGTATTTAAGAG+CGG | - | chr4_1:73739576-73739595 | Msa0571190:intron | 25.0% |
| !! | AAGTGGTAGTGTAAATATTT+AGG | + | chr4_1:73739617-73739636 | None:intergenic | 25.0% |
| ! | GTAAGTTAAAAGAACTAAAG+TGG | + | chr4_1:73739634-73739653 | None:intergenic | 25.0% |
| !! | AGATGATAAATGTTGGTAAA+TGG | + | chr4_1:73739656-73739675 | None:intergenic | 25.0% |
| ! | TTTCCTTTACACATTTATTC+AGG | - | chr4_1:73739924-73739943 | Msa0571190:intron | 25.0% |
| ! | TTCCTTTACACATTTATTCA+GGG | - | chr4_1:73739925-73739944 | Msa0571190:intron | 25.0% |
| ! | GAAAGAAAGAAAAAAAAAGG+TGG | + | chr4_1:73740137-73740156 | None:intergenic | 25.0% |
| ! | GTCAAAGGAGTTTATAATAA+AGG | + | chr4_1:73740717-73740736 | None:intergenic | 25.0% |
| ! | CAAATTCGCTAAAAACAAAA+AGG | - | chr4_1:73740844-73740863 | Msa0571190:intron | 25.0% |
| ! | AAATAGAAAAACGAGTTAGA+GGG | - | chr4_1:73740953-73740972 | Msa0571190:intron | 25.0% |
| !!! | GACTAGATTTTTTTTCAAAG+AGG | - | chr4_1:73741238-73741257 | Msa0571190:intron | 25.0% |
| !! | AAAAGTAGCAATTTTTGCAT+TGG | - | chr4_1:73741366-73741385 | Msa0571190:CDS | 25.0% |
| !! | TTTTTGCATTGGAAATTGTA+CGG | - | chr4_1:73741377-73741396 | Msa0571190:CDS | 25.0% |
| !!! | CAAGACATAGTTTCTTTTTT+TGG | - | chr4_1:73741433-73741452 | Msa0571190:CDS | 25.0% |
| !!! | GTGTTAAGTTATTTTACACA+TGG | + | chr4_1:73741499-73741518 | None:intergenic | 25.0% |
| ! | ACTTAATGGTGGAAACAATT+TGG | - | chr4_1:73737449-73737468 | Msa0571190:intron | 30.0% |
| !! | TAAATTGCATTGAAGTGTTG+GGG | + | chr4_1:73737533-73737552 | None:intergenic | 30.0% |
| ! | CTAAATTGCATTGAAGTGTT+GGG | + | chr4_1:73737534-73737553 | None:intergenic | 30.0% |
| ACTAAATTGCATTGAAGTGT+TGG | + | chr4_1:73737535-73737554 | None:intergenic | 30.0% | |
| !! | GTAACAGTTTTAACATCGTT+GGG | + | chr4_1:73737711-73737730 | None:intergenic | 30.0% |
| !! | TGTAACAGTTTTAACATCGT+TGG | + | chr4_1:73737712-73737731 | None:intergenic | 30.0% |
| ! | ATTTTATAGTTAGTACCACC+GGG | + | chr4_1:73737738-73737757 | None:intergenic | 30.0% |
| ! | GATTTTATAGTTAGTACCAC+CGG | + | chr4_1:73737739-73737758 | None:intergenic | 30.0% |
| TACACCAAATCGGTATAAAA+GGG | + | chr4_1:73738045-73738064 | None:intergenic | 30.0% | |
| ATACACCAAATCGGTATAAA+AGG | + | chr4_1:73738046-73738065 | None:intergenic | 30.0% | |
| GCAAGTGTATACAAATTTGT+AGG | + | chr4_1:73738173-73738192 | None:intergenic | 30.0% | |
| TTGCTAACAATTCTCAATGT+TGG | - | chr4_1:73738393-73738412 | Msa0571190:intron | 30.0% | |
| AATTCTCAATGTTGGAACTT+GGG | - | chr4_1:73738401-73738420 | Msa0571190:intron | 30.0% | |
| TTTATGTTGTGTTATGATGC+TGG | - | chr4_1:73738446-73738465 | Msa0571190:intron | 30.0% | |
| TATAGTGAAAATGTTCCCTA+AGG | + | chr4_1:73738681-73738700 | None:intergenic | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr4_1:73738949-73738968 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr4_1:73738950-73738969 | Msa0571190:intron | 30.0% |
| GAGTACTTAACATATCCTTA+GGG | - | chr4_1:73738976-73738995 | Msa0571190:intron | 30.0% | |
| ! | ATATCCTTAGGGAACATTTT+TGG | - | chr4_1:73738987-73739006 | Msa0571190:intron | 30.0% |
| TTTACCAAAAATGTTCCCTA+AGG | + | chr4_1:73738994-73739013 | None:intergenic | 30.0% | |
| CTCTTGAAGATGATAAATGT+TGG | + | chr4_1:73739663-73739682 | None:intergenic | 30.0% | |
| !!! | AGAATTTTTCAAGACACATG+TGG | + | chr4_1:73739876-73739895 | None:intergenic | 30.0% |
| AACCCTGAATAAATGTGTAA+AGG | + | chr4_1:73739930-73739949 | None:intergenic | 30.0% | |
| ! | ATTCCTAAAACAGAAAGCAT+GGG | + | chr4_1:73740054-73740073 | None:intergenic | 30.0% |
| AAAAAAAAAGGTGGAACAGA+GGG | + | chr4_1:73740128-73740147 | None:intergenic | 30.0% | |
| ! | AATATAGTGGGAAGAAAAAG+AGG | + | chr4_1:73740187-73740206 | None:intergenic | 30.0% |
| !! | ATTCTGCAATTCTGAAGTAA+TGG | + | chr4_1:73740271-73740290 | None:intergenic | 30.0% |
| AGAATTTACCTAAGAGATGA+AGG | - | chr4_1:73740286-73740305 | Msa0571190:intron | 30.0% | |
| ATACAAATCCTTCATCTCTT+AGG | + | chr4_1:73740297-73740316 | None:intergenic | 30.0% | |
| AGTGAAGAATCAGATTGATT+TGG | + | chr4_1:73740327-73740346 | None:intergenic | 30.0% | |
| ! | TTTAGAGTAGGTACAAAAGA+AGG | - | chr4_1:73740510-73740529 | Msa0571190:intron | 30.0% |
| GAAATAGAAAAACGAGTTAG+AGG | - | chr4_1:73740952-73740971 | Msa0571190:intron | 30.0% | |
| AATAGAAAAACGAGTTAGAG+GGG | - | chr4_1:73740954-73740973 | Msa0571190:intron | 30.0% | |
| AAAGGGAATAATATCCTGTT+TGG | - | chr4_1:73741067-73741086 | Msa0571190:intron | 30.0% | |
| TTCCTTAAACAATACCCTTA+GGG | - | chr4_1:73741457-73741476 | Msa0571190:CDS | 30.0% | |
| !! | TTTTAGGAACGAATATATGG+TGG | - | chr4_1:73741685-73741704 | Msa0571190:CDS | 30.0% |
| AACATCATCAGGACGAATTT+GGG | - | chr4_1:73737308-73737327 | Msa0571190:CDS | 35.0% | |
| TCCACCATTAAGTGTGTATT+CGG | + | chr4_1:73737442-73737461 | None:intergenic | 35.0% | |
| !! | AAATTGCATTGAAGTGTTGG+GGG | + | chr4_1:73737532-73737551 | None:intergenic | 35.0% |
| ! | AAATTGTTGTTGCAGCCATT+GGG | + | chr4_1:73737564-73737583 | None:intergenic | 35.0% |
| TACTTTGTTGCATACATCAG+AGG | + | chr4_1:73737646-73737665 | None:intergenic | 35.0% | |
| ! | CAACAAAGTACTAAACTGCA+TGG | - | chr4_1:73737656-73737675 | Msa0571190:intron | 35.0% |
| GTTAAAACTGTTACATGTCC+CGG | - | chr4_1:73737717-73737736 | Msa0571190:intron | 35.0% | |
| ACACCAAATCGGTATAAAAG+GGG | + | chr4_1:73738044-73738063 | None:intergenic | 35.0% | |
| AAAGTAGAATCGGAGGAAAA+AGG | - | chr4_1:73738100-73738119 | Msa0571190:intron | 35.0% | |
| AAGTAGAATCGGAGGAAAAA+GGG | - | chr4_1:73738101-73738120 | Msa0571190:intron | 35.0% | |
| ! | GTTAATCCTCTTGTTTGTCT+AGG | - | chr4_1:73738270-73738289 | Msa0571190:intron | 35.0% |
| !! | TTTGTCTAGGCATTGGTATT+TGG | - | chr4_1:73738283-73738302 | Msa0571190:intron | 35.0% |
| ! | GTGGATTACTTGATTAAGTC+TGG | - | chr4_1:73738305-73738324 | Msa0571190:intron | 35.0% |
| ACTTGATTAAGTCTGGACAT+TGG | - | chr4_1:73738312-73738331 | Msa0571190:intron | 35.0% | |
| CAATTCTCAATGTTGGAACT+TGG | - | chr4_1:73738400-73738419 | Msa0571190:intron | 35.0% | |
| ATTCTCAATGTTGGAACTTG+GGG | - | chr4_1:73738402-73738421 | Msa0571190:intron | 35.0% | |
| TTGGTCCATATTGATCAAGT+AGG | - | chr4_1:73738472-73738491 | Msa0571190:intron | 35.0% | |
| TGGTCCATATTGATCAAGTA+GGG | - | chr4_1:73738473-73738492 | Msa0571190:intron | 35.0% | |
| ATACCCCTACTTGATCAATA+TGG | + | chr4_1:73738480-73738499 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_1:73738715-73738734 | None:intergenic | 35.0% |
| TGTGCTGAGTATTAATTGGA+GGG | + | chr4_1:73738815-73738834 | None:intergenic | 35.0% | |
| GTAGTGTGCTGAGTATTAAT+TGG | + | chr4_1:73738819-73738838 | None:intergenic | 35.0% | |
| ! | GGAGTACTTAACATATCCTT+AGG | - | chr4_1:73738975-73738994 | Msa0571190:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | chr4_1:73739101-73739120 | None:intergenic | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | chr4_1:73739102-73739121 | None:intergenic | 35.0% |
| TTTCTTAACATGTGCCCTAA+GGG | - | chr4_1:73739224-73739243 | Msa0571190:intron | 35.0% | |
| GACAAATAGTGCATTGTGAT+TGG | + | chr4_1:73739789-73739808 | None:intergenic | 35.0% | |
| GCACTATTTGTCACAATTCA+AGG | - | chr4_1:73739797-73739816 | Msa0571190:intron | 35.0% | |
| CTATTTGTCACAATTCAAGG+AGG | - | chr4_1:73739800-73739819 | Msa0571190:intron | 35.0% | |
| AGCTCATATCGTGAAAATGT+CGG | + | chr4_1:73739997-73740016 | None:intergenic | 35.0% | |
| GATTCCTAAAACAGAAAGCA+TGG | + | chr4_1:73740055-73740074 | None:intergenic | 35.0% | |
| GAAAAAAAAAGGTGGAACAG+AGG | + | chr4_1:73740129-73740148 | None:intergenic | 35.0% | |
| AAGAAAAAGAGGAAGGTTGA+AGG | + | chr4_1:73740176-73740195 | None:intergenic | 35.0% | |
| !!! | AAGCTCATGCTTTTTTCATC+TGG | - | chr4_1:73740232-73740251 | Msa0571190:intron | 35.0% |
| !!! | AGCTCATGCTTTTTTCATCT+GGG | - | chr4_1:73740233-73740252 | Msa0571190:intron | 35.0% |
| ! | TGTTGATGCATGTTTAGAGT+AGG | - | chr4_1:73740498-73740517 | Msa0571190:intron | 35.0% |
| AAAAGAAGGACTGGAAATGA+AGG | - | chr4_1:73740524-73740543 | Msa0571190:intron | 35.0% | |
| AGCTACACGAAATTTGTCAA+AGG | + | chr4_1:73740732-73740751 | None:intergenic | 35.0% | |
| ! | AGAAACTAGGGTTTTTGTGA+CGG | - | chr4_1:73741032-73741051 | Msa0571190:intron | 35.0% |
| ATGCTTAAACAATGCCCTTA+GGG | + | chr4_1:73741344-73741363 | None:intergenic | 35.0% | |
| GTTCCTTAAACAATACCCTT+AGG | - | chr4_1:73741456-73741475 | Msa0571190:CDS | 35.0% | |
| AAATCAGTAAAGCTGCAACA+TGG | + | chr4_1:73741888-73741907 | None:intergenic | 35.0% | |
| GAACATCATCAGGACGAATT+TGG | - | chr4_1:73737307-73737326 | Msa0571190:CDS | 40.0% | |
| ACATCATCAGGACGAATTTG+GGG | - | chr4_1:73737309-73737328 | Msa0571190:CDS | 40.0% | |
| CTTGCCGAATACACACTTAA+TGG | - | chr4_1:73737435-73737454 | Msa0571190:intron | 40.0% | |
| GGGGTTGAACTAAATTGCAT+TGG | + | chr4_1:73737513-73737532 | None:intergenic | 40.0% | |
| ! | CAATTTAGTTCAACCCCCAA+TGG | - | chr4_1:73737516-73737535 | Msa0571190:intron | 40.0% |
| ! | AATTGTTGTTGCAGCCATTG+GGG | + | chr4_1:73737563-73737582 | None:intergenic | 40.0% |
| ! | CAAATTGTTGTTGCAGCCAT+TGG | + | chr4_1:73737565-73737584 | None:intergenic | 40.0% |
| CAATGGCTGCAACAACAATT+TGG | - | chr4_1:73737563-73737582 | Msa0571190:intron | 40.0% | |
| !! | GTTGGGTTGATGATAAGCAT+CGG | + | chr4_1:73737694-73737713 | None:intergenic | 40.0% |
| ACTTTGGCGGTTGTATGTTA+CGG | - | chr4_1:73737914-73737933 | Msa0571190:intron | 40.0% | |
| CACCAAATCGGTATAAAAGG+GGG | + | chr4_1:73738043-73738062 | None:intergenic | 40.0% | |
| AGTAGAATCGGAGGAAAAAG+GGG | - | chr4_1:73738102-73738121 | Msa0571190:intron | 40.0% | |
| ! | AAGTCTGGACATTGGTGATT+TGG | - | chr4_1:73738320-73738339 | Msa0571190:intron | 40.0% |
| ! | GTATGCTCAGATTTTTGCTG+AGG | - | chr4_1:73738342-73738361 | Msa0571190:intron | 40.0% |
| ! | AACTTGGGGAATTTCAAGTG+AGG | - | chr4_1:73738416-73738435 | Msa0571190:intron | 40.0% |
| TGTGTTATGATGCTGGAACT+TGG | - | chr4_1:73738453-73738472 | Msa0571190:intron | 40.0% | |
| GGTCCATATTGATCAAGTAG+GGG | - | chr4_1:73738474-73738493 | Msa0571190:intron | 40.0% | |
| ATGAGTGTATCGTTGTTCAC+AGG | - | chr4_1:73738513-73738532 | Msa0571190:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_1:73738954-73738973 | None:intergenic | 40.0% |
| GTGTGCTGAGTATTAATTGG+AGG | + | chr4_1:73738816-73738835 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr4_1:73738954-73738973 | Msa0571190:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr4_1:73739084-73739103 | Msa0571190:CDS | 40.0% |
| GTTTCTTAACATGTGCCCTA+AGG | - | chr4_1:73739223-73739242 | Msa0571190:intron | 40.0% | |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | + | chr4_1:73739241-73739260 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | + | chr4_1:73739242-73739261 | None:intergenic | 40.0% |
| GATCTTGTATTTAAGAGCGG+AGG | - | chr4_1:73739579-73739598 | Msa0571190:intron | 40.0% | |
| !! | TTCAGGGTTGTTTTGCAACA+AGG | - | chr4_1:73739941-73739960 | Msa0571190:intron | 40.0% |
| GCTCATATCGTGAAAATGTC+GGG | + | chr4_1:73739996-73740015 | None:intergenic | 40.0% | |
| ! | GACATTTTCACGATATGAGC+TGG | - | chr4_1:73739996-73740015 | Msa0571190:intron | 40.0% |
| ATGAGCTGGCAAATGGTAAT+TGG | - | chr4_1:73740010-73740029 | Msa0571190:intron | 40.0% | |
| ! | TCACCCATGCTTTCTGTTTT+AGG | - | chr4_1:73740048-73740067 | Msa0571190:intron | 40.0% |
| AATAAAGACAAGCGTGTGAG+AGG | + | chr4_1:73740077-73740096 | None:intergenic | 40.0% | |
| TAGTGGGAAGAAAAAGAGGA+AGG | + | chr4_1:73740183-73740202 | None:intergenic | 40.0% | |
| AGTAGGTACAAAAGAAGGAC+TGG | - | chr4_1:73740515-73740534 | Msa0571190:intron | 40.0% | |
| AGATTTCCTGGGAAGTAAGA+AGG | - | chr4_1:73740569-73740588 | Msa0571190:intron | 40.0% | |
| AGAAAATATCGCGAACGCTT+TGG | + | chr4_1:73740627-73740646 | None:intergenic | 40.0% | |
| CATCAAAGAGGGGTGATTTA+GGG | + | chr4_1:73741001-73741020 | None:intergenic | 40.0% | |
| TCTTCTCCATCCATCAAAGA+GGG | + | chr4_1:73741012-73741031 | None:intergenic | 40.0% | |
| TTCTTCTCCATCCATCAAAG+AGG | + | chr4_1:73741013-73741032 | None:intergenic | 40.0% | |
| TGGATGGAGAAGAAGAAACT+AGG | - | chr4_1:73741019-73741038 | Msa0571190:intron | 40.0% | |
| GGATGGAGAAGAAGAAACTA+GGG | - | chr4_1:73741020-73741039 | Msa0571190:intron | 40.0% | |
| AAATTCACACACAGCCAAAC+AGG | + | chr4_1:73741084-73741103 | None:intergenic | 40.0% | |
| AAATGCTAACAAGTGCCCTA+AGG | - | chr4_1:73741326-73741345 | Msa0571190:intron | 40.0% | |
| AATGCTAACAAGTGCCCTAA+GGG | - | chr4_1:73741327-73741346 | Msa0571190:intron | 40.0% | |
| GATGCTTAAACAATGCCCTT+AGG | + | chr4_1:73741345-73741364 | None:intergenic | 40.0% | |
| !! | TGCCCTAAGGGTATTGTTTA+AGG | + | chr4_1:73741462-73741481 | None:intergenic | 40.0% |
| ! | AGGAACGAATATATGGTGGA+AGG | - | chr4_1:73741689-73741708 | Msa0571190:CDS | 40.0% |
| !! | ATATATGGTGGAAGGTGTCT+TGG | - | chr4_1:73741697-73741716 | Msa0571190:CDS | 40.0% |
| TGTCTTGGAGCAAAAGAAAG+AGG | - | chr4_1:73741712-73741731 | Msa0571190:CDS | 40.0% | |
| AAAAGCAGCAAAAGTGACTC+TGG | + | chr4_1:73741849-73741868 | None:intergenic | 40.0% | |
| AAGCTGCAACATGGTAACTT+GGG | + | chr4_1:73741879-73741898 | None:intergenic | 40.0% | |
| AAAGCTGCAACATGGTAACT+TGG | + | chr4_1:73741880-73741899 | None:intergenic | 40.0% | |
| AGTTGGACAGTGGCAAAACA+TGG | - | chr4_1:73737265-73737284 | Msa0571190:CDS | 45.0% | |
| TGTCGAAACGACAACCTGAT+CGG | + | chr4_1:73737335-73737354 | None:intergenic | 45.0% | |
| ! | GGTTGTCGTTTCGACAATTC+AGG | - | chr4_1:73737339-73737358 | Msa0571190:CDS | 45.0% |
| AGTTGTCAAACCGGTGATTG+CGG | - | chr4_1:73737369-73737388 | Msa0571190:CDS | 45.0% | |
| ACCTGATAAGCTGCAACTGA+GGG | + | chr4_1:73737400-73737419 | None:intergenic | 45.0% | |
| TACCTGATAAGCTGCAACTG+AGG | + | chr4_1:73737401-73737420 | None:intergenic | 45.0% | |
| GTGTATTCGGCAAGTGTGAT+CGG | + | chr4_1:73737429-73737448 | None:intergenic | 45.0% | |
| GCCGAATACACACTTAATGG+TGG | - | chr4_1:73737438-73737457 | Msa0571190:intron | 45.0% | |
| ! | ATTGTTGTTGCAGCCATTGG+GGG | + | chr4_1:73737562-73737581 | None:intergenic | 45.0% |
| AAAACTGTTACATGTCCCGG+TGG | - | chr4_1:73737720-73737739 | Msa0571190:intron | 45.0% | |
| GAAAACACAGCTGTTGGGAT+TGG | + | chr4_1:73737881-73737900 | None:intergenic | 45.0% | |
| TTCTGCGGAATCAACCACTT+TGG | - | chr4_1:73737898-73737917 | Msa0571190:intron | 45.0% | |
| GTAACATACAACCGCCAAAG+TGG | + | chr4_1:73737915-73737934 | None:intergenic | 45.0% | |
| GCTAGTAAGCGATGAATGCT+TGG | + | chr4_1:73737942-73737961 | None:intergenic | 45.0% | |
| AGCTAACTCTCATCGCATGA+AGG | - | chr4_1:73737959-73737978 | Msa0571190:intron | 45.0% | |
| !! | GACCCCCTTTTATACCGATT+TGG | - | chr4_1:73738038-73738057 | Msa0571190:intron | 45.0% |
| CCAATGCCTAGACAAACAAG+AGG | + | chr4_1:73738279-73738298 | None:intergenic | 45.0% | |
| ! | CCTCTTGTTTGTCTAGGCAT+TGG | - | chr4_1:73738276-73738295 | Msa0571190:intron | 45.0% |
| !! | GTCTAGGCATTGGTATTTGG+TGG | - | chr4_1:73738286-73738305 | Msa0571190:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_1:73738953-73738972 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr4_1:73738953-73738972 | Msa0571190:intron | 45.0% |
| TGTCACAATTCAAGGAGGTG+TGG | - | chr4_1:73739805-73739824 | Msa0571190:intron | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr4_1:73739817-73739836 | Msa0571190:intron | 45.0% |
| TCACGATATGAGCTGGCAAA+TGG | - | chr4_1:73740003-73740022 | Msa0571190:intron | 45.0% | |
| ! | ATGCTTCTGGGTTTTCCTGA+AGG | - | chr4_1:73740470-73740489 | Msa0571190:intron | 45.0% |
| TGCATCAACACTGTTCCTTC+AGG | + | chr4_1:73740488-73740507 | None:intergenic | 45.0% | |
| ! | GCGTTCGCGATATTTTCTTG+AGG | - | chr4_1:73740629-73740648 | Msa0571190:intron | 45.0% |
| ! | ACGAGTTAGAGGGGTGATTT+TGG | - | chr4_1:73740963-73740982 | Msa0571190:intron | 45.0% |
| ! | CGAGTTAGAGGGGTGATTTT+GGG | - | chr4_1:73740964-73740983 | Msa0571190:intron | 45.0% |
| CCATCAAAGAGGGGTGATTT+AGG | + | chr4_1:73741002-73741021 | None:intergenic | 45.0% | |
| CCTAAATCACCCCTCTTTGA+TGG | - | chr4_1:73740999-73741018 | Msa0571190:intron | 45.0% | |
| AATCACCCCTCTTTGATGGA+TGG | - | chr4_1:73741003-73741022 | Msa0571190:intron | 45.0% | |
| CTTCTCCATCCATCAAAGAG+GGG | + | chr4_1:73741011-73741030 | None:intergenic | 45.0% | |
| CTTGCTAACAAGTGCCCTAA+GGG | + | chr4_1:73741474-73741493 | None:intergenic | 45.0% | |
| TCTTGCTAACAAGTGCCCTA+AGG | + | chr4_1:73741475-73741494 | None:intergenic | 45.0% | |
| TGGAGCAAAAGAAAGAGGAC+TGG | - | chr4_1:73741717-73741736 | Msa0571190:CDS | 45.0% | |
| TCTCTACCAAGTCAGAAGCT+TGG | - | chr4_1:73741784-73741803 | Msa0571190:CDS | 45.0% | |
| !! | AAAAATATGTATATATAATA+GGG | - | chr4_1:73739474-73739493 | Msa0571190:intron | 5.0% |
| ACGAATGTTCCTACACCGTC+TGG | - | chr4_1:73737214-73737233 | Msa0571190:CDS | 50.0% | |
| !! | CACCGGTTTGACAACTACCA+CGG | + | chr4_1:73737365-73737384 | None:intergenic | 50.0% |
| !! | TGTTGGGATTGGTGGTGTAG+CGG | + | chr4_1:73737870-73737889 | None:intergenic | 50.0% |
| AACACAGCTGTTGGGATTGG+TGG | + | chr4_1:73737878-73737897 | None:intergenic | 50.0% | |
| CCGCAGAAAACACAGCTGTT+GGG | + | chr4_1:73737886-73737905 | None:intergenic | 50.0% | |
| ! | CCCAACAGCTGTGTTTTCTG+CGG | - | chr4_1:73737883-73737902 | Msa0571190:intron | 50.0% |
| TCCGCAGAAAACACAGCTGT+TGG | + | chr4_1:73737887-73737906 | None:intergenic | 50.0% | |
| TGCGGAATCAACCACTTTGG+CGG | - | chr4_1:73737901-73737920 | Msa0571190:intron | 50.0% | |
| TCACAGGTTGCTGTGTGAGT+TGG | - | chr4_1:73738529-73738548 | Msa0571190:intron | 50.0% | |
| CACAGGTTGCTGTGTGAGTT+GGG | - | chr4_1:73738530-73738549 | Msa0571190:intron | 50.0% | |
| ACAGGTTGCTGTGTGAGTTG+GGG | - | chr4_1:73738531-73738550 | Msa0571190:intron | 50.0% | |
| ACTAGAGCGAGAGATGCTTC+TGG | - | chr4_1:73740457-73740476 | Msa0571190:intron | 50.0% | |
| CTAGAGCGAGAGATGCTTCT+GGG | - | chr4_1:73740458-73740477 | Msa0571190:intron | 50.0% | |
| ATGACCTCTGCGAGATTTCC+TGG | - | chr4_1:73740557-73740576 | Msa0571190:intron | 50.0% | |
| TGACCTCTGCGAGATTTCCT+GGG | - | chr4_1:73740558-73740577 | Msa0571190:intron | 50.0% | |
| CCTTTGCCTTCTTACTTCCC+AGG | + | chr4_1:73740578-73740597 | None:intergenic | 50.0% | |
| CCTGGGAAGTAAGAAGGCAA+AGG | - | chr4_1:73740575-73740594 | Msa0571190:intron | 50.0% | |
| TGACGGCTCACAAGAGAGAA+AGG | - | chr4_1:73741049-73741068 | Msa0571190:intron | 50.0% | |
| GACGGCTCACAAGAGAGAAA+GGG | - | chr4_1:73741050-73741069 | Msa0571190:intron | 50.0% | |
| ACCAAGTCAGAAGCTTGGCA+CGG | - | chr4_1:73741789-73741808 | Msa0571190:CDS | 50.0% | |
| GCAGCAAAAGTGACTCTGGA+GGG | + | chr4_1:73741845-73741864 | None:intergenic | 50.0% | |
| AGCAGCAAAAGTGACTCTGG+AGG | + | chr4_1:73741846-73741865 | None:intergenic | 50.0% | |
| TGTTCCAGCAGCGACGTCAA+TGG | + | chr4_1:73737292-73737311 | None:intergenic | 55.0% | |
| GTCGCTGCTGGAACATCATC+AGG | - | chr4_1:73737297-73737316 | Msa0571190:CDS | 55.0% | |
| CGTTTCGACAATTCAGGCCG+TGG | - | chr4_1:73737345-73737364 | Msa0571190:CDS | 55.0% | |
| GGCCGTGGTAGTTGTCAAAC+CGG | - | chr4_1:73737360-73737379 | Msa0571190:CDS | 55.0% | |
| TGTCAAACCGGTGATTGCGG+TGG | - | chr4_1:73737372-73737391 | Msa0571190:intron | 55.0% | |
| GCCCTCAGTTGCAGCTTATC+AGG | - | chr4_1:73737396-73737415 | Msa0571190:intron | 55.0% | |
| !! | GATTGGTGGTGTAGCGGAGA+AGG | + | chr4_1:73737864-73737883 | None:intergenic | 55.0% |
| CTTCCCAGGAAATCTCGCAG+AGG | + | chr4_1:73740564-73740583 | None:intergenic | 55.0% | |
| GCTAGTGCCAACATGTGGCA+CGG | - | chr4_1:73741811-73741830 | Msa0571190:CDS | 55.0% | |
| ! | GCAAAAGTGACTCTGGAGGG+TGG | + | chr4_1:73741842-73741861 | None:intergenic | 55.0% |
| TTCCTACACCGTCTGGCCAG+CGG | - | chr4_1:73737221-73737240 | Msa0571190:CDS | 60.0% | |
| TGGTCCATTGACGTCGCTGC+TGG | - | chr4_1:73737285-73737304 | Msa0571190:CDS | 60.0% | |
| ! | GGACGAATTTGGGGCCGATC+AGG | - | chr4_1:73737318-73737337 | Msa0571190:CDS | 60.0% |
| ! | TGGTGGTGTAGCGGAGAAGG+CGG | + | chr4_1:73737861-73737880 | None:intergenic | 60.0% |
| GCCGTGCCAAGCTTCTGACT+TGG | + | chr4_1:73741793-73741812 | None:intergenic | 60.0% | |
| GCACGGCTAGTGCCAACATG+TGG | - | chr4_1:73741806-73741825 | Msa0571190:CDS | 60.0% | |
| ! | AGTGACTCTGGAGGGTGGCA+CGG | + | chr4_1:73741837-73741856 | None:intergenic | 60.0% |
| TGGTATGGCCGCTGGCCAGA+CGG | + | chr4_1:73737232-73737251 | None:intergenic | 65.0% | |
| GGAGGTCGGCAGTTGGACAG+TGG | - | chr4_1:73737255-73737274 | Msa0571190:CDS | 65.0% | |
| !! | GAGGGCACCACCGCAATCAC+CGG | + | chr4_1:73737382-73737401 | None:intergenic | 65.0% |
| GTCTGGCCAGCGGCCATACC+AGG | - | chr4_1:73737231-73737250 | Msa0571190:CDS | 70.0% | |
| TGGCCAGCGGCCATACCAGG+CGG | - | chr4_1:73737234-73737253 | Msa0571190:CDS | 70.0% | |
| CGGCCATACCAGGCGGAGGT+CGG | - | chr4_1:73737241-73737260 | Msa0571190:CDS | 70.0% | |
| CTGCCGACCTCCGCCTGGTA+TGG | + | chr4_1:73737247-73737266 | None:intergenic | 70.0% | |
| ACCAGGCGGAGGTCGGCAGT+TGG | - | chr4_1:73737248-73737267 | Msa0571190:CDS | 70.0% | |
| TCCAACTGCCGACCTCCGCC+TGG | + | chr4_1:73737252-73737271 | None:intergenic | 70.0% | |
| GGCACGGCCGTGCCACATGT+TGG | + | chr4_1:73741821-73741840 | None:intergenic | 70.0% | |
| GGCCGCTGGCCAGACGGTGT+AGG | + | chr4_1:73737226-73737245 | None:intergenic | 75.0% | |
| CCTCCGCCTGGTATGGCCGC+TGG | + | chr4_1:73737240-73737259 | None:intergenic | 75.0% | |
| CCAGCGGCCATACCAGGCGG+AGG | - | chr4_1:73737237-73737256 | Msa0571190:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 73737129 | 73741951 | 73737129 | ID=Msa0571190;Name=Msa0571190 |
| chr4_1 | mRNA | 73737129 | 73741951 | 73737129 | ID=Msa0571190-mRNA-1;Parent=Msa0571190;Name=Msa0571190-mRNA-1;_AED=0.47;_eAED=0.52;_QI=0|0|0|0.75|1|1|4|0|344 |
| chr4_1 | exon | 73741339 | 73741951 | 73741339 | ID=Msa0571190-mRNA-1:exon:25317;Parent=Msa0571190-mRNA-1 |
| chr4_1 | exon | 73741155 | 73741222 | 73741155 | ID=Msa0571190-mRNA-1:exon:25316;Parent=Msa0571190-mRNA-1 |
| chr4_1 | exon | 73739042 | 73739134 | 73739042 | ID=Msa0571190-mRNA-1:exon:25315;Parent=Msa0571190-mRNA-1 |
| chr4_1 | exon | 73737129 | 73737389 | 73737129 | ID=Msa0571190-mRNA-1:exon:25314;Parent=Msa0571190-mRNA-1 |
| chr4_1 | CDS | 73741339 | 73741951 | 73741339 | ID=Msa0571190-mRNA-1:cds;Parent=Msa0571190-mRNA-1 |
| chr4_1 | CDS | 73741155 | 73741222 | 73741155 | ID=Msa0571190-mRNA-1:cds;Parent=Msa0571190-mRNA-1 |
| chr4_1 | CDS | 73739042 | 73739134 | 73739042 | ID=Msa0571190-mRNA-1:cds;Parent=Msa0571190-mRNA-1 |
| chr4_1 | CDS | 73737129 | 73737389 | 73737129 | ID=Msa0571190-mRNA-1:cds;Parent=Msa0571190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
