AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0570250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570250 MtrunA17_Chr8g0385601 92.377 223 14 2 1 221 1 222 2.39e-152 421
Msa0570250 MtrunA17_Chr8g0385631 82.273 220 38 1 1 220 1 219 3.40e-127 358
Msa0570250 MtrunA17_Chr3g0131541 64.216 204 66 3 1 201 1 200 2.07e-91 267
Msa0570250 MtrunA17_Chr3g0131551 61.579 190 70 2 1 187 7 196 5.34e-83 246
Msa0570250 MtrunA17_Chr8g0385611 72.611 157 43 0 1 157 1 157 3.74e-77 229
Msa0570250 MtrunA17_Chr8g0385621 70.909 55 16 0 158 212 1 55 2.54e-20 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570250 AT3G23760.1 63.842 177 61 2 9 183 11 186 1.90e-82 244
Msa0570250 AT4G14100.1 59.116 181 73 1 9 189 8 187 5.74e-81 241

Find 89 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCTTCTGTTGTGTATT+TGG 0.136397 4_1:-72342285 None:intergenic
CTGTATAATAATCTTTGTTT+TGG 0.162154 4_1:+72342422 Msa0570250:three_prime_UTR
GCTTGATGGTGCTAATTATT+TGG 0.169784 4_1:+72341941 Msa0570250:CDS
TATCTTTGTTACTATAAATA+AGG 0.174666 4_1:+72342502 Msa0570250:three_prime_UTR
GCTCCTTCTGTTGTGTATTT+GGG 0.213711 4_1:-72342284 None:intergenic
TCCGGCCACGGCGCCGGAAT+TGG 0.215529 4_1:-72341690 None:intergenic
GGGAGAAAGTGGAATTTATT+TGG 0.265467 4_1:+72342000 Msa0570250:CDS
GGCCATTGCTTTGCTGATTT+CGG 0.266745 4_1:-72341589 None:intergenic
CCACGACCCAATTGGCTTGA+TGG 0.304709 4_1:+72341927 Msa0570250:CDS
CTTGATGGTGCTAATTATTT+GGG 0.312059 4_1:+72341942 Msa0570250:CDS
TGTTTCTCAACCTTTAGTTT+TGG 0.347136 4_1:-72341496 None:intergenic
CCGGCCACGGCGCCGGAATT+GGG 0.367218 4_1:-72341689 None:intergenic
ATCTTTGTTACTATAAATAA+GGG 0.369691 4_1:+72342503 Msa0570250:three_prime_UTR
GACCGCAGAGGACCCAATTC+CGG 0.375381 4_1:+72341677 Msa0570250:CDS
AAATACTATCCTTAACTTGA+TGG 0.381850 4_1:+72341448 Msa0570250:five_prime_UTR
ATCTACTATGTACCTATTGC+TGG 0.382566 4_1:+72342652 Msa0570250:three_prime_UTR
TGAGAACATCAAGCTGGTAT+TGG 0.386461 4_1:-72341809 None:intergenic
AGGACTGAGTGGAACTGTTC+CGG 0.404511 4_1:-72341708 None:intergenic
ATTAGCACCATCAAGCCAAT+TGG 0.405118 4_1:-72341934 None:intergenic
CGTTACTTCCCATCAAGTTA+AGG 0.406563 4_1:-72341457 None:intergenic
GGTTTATAATAAGCTTTGCT+TGG 0.415342 4_1:+72342460 Msa0570250:three_prime_UTR
TATAAATCATATGATATTGT+TGG 0.417733 4_1:-72342384 None:intergenic
TTCTCAAATATGACCTTGAA+TGG 0.424620 4_1:+72341826 Msa0570250:CDS
AATGTTGAAATTTCGTCCAT+TGG 0.430457 4_1:-72341784 None:intergenic
CAGTATGAACGACGTGGATA+AGG 0.432799 4_1:-72341543 None:intergenic
AAGTTAAGGATAGTATTTAT+CGG 0.441239 4_1:-72341443 None:intergenic
ATGTTGAAATTTCGTCCATT+GGG 0.444878 4_1:-72341783 None:intergenic
CTCTTCGAAAACAAGACTTA+TGG 0.444999 4_1:+72341751 Msa0570250:CDS
ATTCACCCAGCCAAAACTAA+AGG 0.447343 4_1:+72341486 Msa0570250:five_prime_UTR
AACTGTTCCGGCCACGGCGC+CGG 0.448851 4_1:-72341696 None:intergenic
TGGTGCCATTGTTCCATTCA+AGG 0.450465 4_1:-72341839 None:intergenic
ATAAATCATATGATATTGTT+GGG 0.451260 4_1:-72342383 None:intergenic
ATGATACAACCACCAGCAAT+AGG 0.455297 4_1:-72342664 None:intergenic
GTTTATAATAAGCTTTGCTT+GGG 0.458543 4_1:+72342461 Msa0570250:three_prime_UTR
CCCAATTCCGGCGCCGTGGC+CGG 0.459468 4_1:+72341689 Msa0570250:CDS
TTGGTATTCCACGACCCAAT+TGG 0.459870 4_1:+72341919 Msa0570250:CDS
AATTGGGTCCTCTGCGGTCG+AGG 0.465296 4_1:-72341673 None:intergenic
AACATTACACAGAAAATTGT+CGG 0.472163 4_1:-72341976 None:intergenic
GTTGAGTAGCAACAACTTGA+AGG 0.480615 4_1:+72342525 Msa0570250:three_prime_UTR
ACTAATGAGTGAGATGAGAT+AGG 0.485469 4_1:+72342357 Msa0570250:CDS
CTCCTTCTGTTGTGTATTTG+GGG 0.486624 4_1:-72342283 None:intergenic
TGTTATAACTTCAAATATTG+TGG 0.488840 4_1:+72342690 Msa0570250:three_prime_UTR
GTGTAATGTTTGGGAGAAAG+TGG 0.494163 4_1:+72341989 Msa0570250:CDS
CGGTCGAGGTTGAGAGATGA+AGG 0.502745 4_1:-72341659 None:intergenic
AATACTATCCTTAACTTGAT+GGG 0.507432 4_1:+72341449 Msa0570250:five_prime_UTR
AGCCGCTTCTGTTGAGGAGT+AGG 0.512649 4_1:-72341728 None:intergenic
ACTTTGCAAGTGTGCTCGAA+AGG 0.514114 4_1:-72341882 None:intergenic
TTAGCACCATCAAGCCAATT+GGG 0.517591 4_1:-72341933 None:intergenic
ACTAGATGATGCCCATTGGC+AGG 0.518656 4_1:+72342222 Msa0570250:CDS
AACAAGACTTATGGTACGAT+TGG 0.522229 4_1:+72341760 Msa0570250:CDS
GAGTGGAACTGTTCCGGCCA+CGG 0.525676 4_1:-72341702 None:intergenic
AGGTTGAGAGATGAAGGAAG+AGG 0.542859 4_1:-72341653 None:intergenic
ATTGCTTTGCTGATTTCGGA+AGG 0.543100 4_1:-72341585 None:intergenic
GAAGAGAGCCGCTTCTGTTG+AGG 0.544198 4_1:-72341734 None:intergenic
TAATAACAAAGGTTCATTGA+AGG 0.546726 4_1:-72342622 None:intergenic
TACTGATGTGATGACATTTG+AGG 0.549841 4_1:+72342189 Msa0570250:CDS
AATGCATTCTTCTGTGGCAG+AGG 0.552048 4_1:-72341610 None:intergenic
AATAGACAGGAGCCTGCCAA+TGG 0.552630 4_1:-72342234 None:intergenic
TTATGGTACGATTGGCCCAA+TGG 0.556501 4_1:+72341768 Msa0570250:CDS
CTTTGCAAGTGTGCTCGAAA+GGG 0.564893 4_1:-72341881 None:intergenic
CCATCAAGCCAATTGGGTCG+TGG 0.576651 4_1:-72341927 None:intergenic
ATAGACAGGAGCCTGCCAAT+GGG 0.577912 4_1:-72342233 None:intergenic
GTCCTACTCCTCAACAGAAG+CGG 0.579821 4_1:+72341726 Msa0570250:CDS
AACCCCAAATACACAACAGA+AGG 0.582352 4_1:+72342281 Msa0570250:CDS
TCGTAGAAGATCCACTTGAC+AGG 0.590706 4_1:-72342050 None:intergenic
TCACTAAAAGACCTGTCAAG+TGG 0.590795 4_1:+72342039 Msa0570250:CDS
TATGACCTTGAATGGAACAA+TGG 0.591932 4_1:+72341834 Msa0570250:CDS
TTCCGAAATCAGCAAAGCAA+TGG 0.592636 4_1:+72341587 Msa0570250:exon
CTTAACTTGATGGGAAGTAA+CGG 0.594348 4_1:+72341458 Msa0570250:five_prime_UTR
GCCTTACTAAAACAATAGAC+AGG 0.594404 4_1:-72342247 None:intergenic
CAGTACTAGATGATGCCCAT+TGG 0.597150 4_1:+72342218 Msa0570250:CDS
CATATTTGAGAACATCAAGC+TGG 0.600302 4_1:-72341815 None:intergenic
AGGGTCGAGAGTGTAGAGAA+AGG 0.604953 4_1:-72341862 None:intergenic
CAAACAAATGCATTCTTCTG+TGG 0.604964 4_1:-72341616 None:intergenic
AGGACCCAATTCCGGCGCCG+TGG 0.623491 4_1:+72341685 Msa0570250:CDS
TACTATGTACCTATTGCTGG+TGG 0.629263 4_1:+72342655 Msa0570250:three_prime_UTR
GATGTGATGACATTTGAGGT+TGG 0.629445 4_1:+72342193 Msa0570250:CDS
AATCATATGATATTGTTGGG+TGG 0.638483 4_1:-72342380 None:intergenic
GTCAAGTGGATCTTCTACGA+CGG 0.641430 4_1:+72342053 Msa0570250:CDS
GCAGCTTCTTACAAATATCG+TGG 0.645047 4_1:-72341421 None:intergenic
AAAGTGACTCAATATGATGT+TGG 0.647948 4_1:+72341900 Msa0570250:CDS
CGCCGGAATTGGGTCCTCTG+CGG 0.648334 4_1:-72341679 None:intergenic
TGTTGAGGAGTAGGACTGAG+TGG 0.648618 4_1:-72341719 None:intergenic
AATATCGTGGATCTTCACTT+CGG 0.660843 4_1:-72341408 None:intergenic
AGATGAATACATAATAACAA+AGG 0.672843 4_1:-72342633 None:intergenic
GTCGAGAGTGTAGAGAAAGG+TGG 0.677328 4_1:-72341859 None:intergenic
TCTCTCAACCTCGACCGCAG+AGG 0.678519 4_1:+72341665 Msa0570250:CDS
CAGTATCAGTATGAACGACG+TGG 0.680246 4_1:-72341549 None:intergenic
CTTATTATAAACCAGCACCG+AGG 0.764812 4_1:-72342450 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTCATTATATGATGAT+TGG + chr4_1:72342150-72342169 Msa0570250:intron 15.0%
!! ATAAATCATATGATATTGTT+GGG - chr4_1:72342386-72342405 None:intergenic 15.0%
!! TATAAATCATATGATATTGT+TGG - chr4_1:72342387-72342406 None:intergenic 15.0%
!!! TGTATAATAATCTTTGTTTT+GGG + chr4_1:72342423-72342442 Msa0570250:three_prime_UTR 15.0%
!! TATCTTTGTTACTATAAATA+AGG + chr4_1:72342502-72342521 Msa0570250:three_prime_UTR 15.0%
!! ATCTTTGTTACTATAAATAA+GGG + chr4_1:72342503-72342522 Msa0570250:three_prime_UTR 15.0%
!! TAAATTCATTATATGATGAT+TGG + chr4_1:72342150-72342169 Msa0570250:intron 15.0%
!! ATAAATCATATGATATTGTT+GGG - chr4_1:72342386-72342405 None:intergenic 15.0%
!! TATAAATCATATGATATTGT+TGG - chr4_1:72342387-72342406 None:intergenic 15.0%
!!! TGTATAATAATCTTTGTTTT+GGG + chr4_1:72342423-72342442 Msa0570250:three_prime_UTR 15.0%
!! TATCTTTGTTACTATAAATA+AGG + chr4_1:72342502-72342521 Msa0570250:three_prime_UTR 15.0%
!! ATCTTTGTTACTATAAATAA+GGG + chr4_1:72342503-72342522 Msa0570250:three_prime_UTR 15.0%
!! AAGTTAAGGATAGTATTTAT+CGG - chr4_1:72341446-72341465 None:intergenic 20.0%
!!! CTGTATAATAATCTTTGTTT+TGG + chr4_1:72342422-72342441 Msa0570250:three_prime_UTR 20.0%
!!! GTATAATAATCTTTGTTTTG+GGG + chr4_1:72342424-72342443 Msa0570250:three_prime_UTR 20.0%
!! AGATGAATACATAATAACAA+AGG - chr4_1:72342636-72342655 None:intergenic 20.0%
!! TGTTATAACTTCAAATATTG+TGG + chr4_1:72342690-72342709 Msa0570250:three_prime_UTR 20.0%
!! AAGTTAAGGATAGTATTTAT+CGG - chr4_1:72341446-72341465 None:intergenic 20.0%
!!! CTGTATAATAATCTTTGTTT+TGG + chr4_1:72342422-72342441 Msa0570250:three_prime_UTR 20.0%
!!! GTATAATAATCTTTGTTTTG+GGG + chr4_1:72342424-72342443 Msa0570250:three_prime_UTR 20.0%
!! AGATGAATACATAATAACAA+AGG - chr4_1:72342636-72342655 None:intergenic 20.0%
!! TGTTATAACTTCAAATATTG+TGG + chr4_1:72342690-72342709 Msa0570250:three_prime_UTR 20.0%
!! AAATACTATCCTTAACTTGA+TGG + chr4_1:72341448-72341467 Msa0570250:five_prime_UTR 25.0%
!! AATACTATCCTTAACTTGAT+GGG + chr4_1:72341449-72341468 Msa0570250:five_prime_UTR 25.0%
! AACATTACACAGAAAATTGT+CGG - chr4_1:72341979-72341998 None:intergenic 25.0%
!! ACAATTTTCTGTGTAATGTT+TGG + chr4_1:72341979-72341998 Msa0570250:CDS 25.0%
!! CAATTTTCTGTGTAATGTTT+GGG + chr4_1:72341980-72341999 Msa0570250:CDS 25.0%
! CTACATATAGCTAAAATTAC+TGG + chr4_1:72342104-72342123 Msa0570250:intron 25.0%
! GTTTATAATAAGCTTTGCTT+GGG + chr4_1:72342461-72342480 Msa0570250:three_prime_UTR 25.0%
! TAATAACAAAGGTTCATTGA+AGG - chr4_1:72342625-72342644 None:intergenic 25.0%
!! AAATACTATCCTTAACTTGA+TGG + chr4_1:72341448-72341467 Msa0570250:five_prime_UTR 25.0%
!! AATACTATCCTTAACTTGAT+GGG + chr4_1:72341449-72341468 Msa0570250:five_prime_UTR 25.0%
! AACATTACACAGAAAATTGT+CGG - chr4_1:72341979-72341998 None:intergenic 25.0%
!! ACAATTTTCTGTGTAATGTT+TGG + chr4_1:72341979-72341998 Msa0570250:CDS 25.0%
!! CAATTTTCTGTGTAATGTTT+GGG + chr4_1:72341980-72341999 Msa0570250:CDS 25.0%
! CTACATATAGCTAAAATTAC+TGG + chr4_1:72342104-72342123 Msa0570250:intron 25.0%
! GTTTATAATAAGCTTTGCTT+GGG + chr4_1:72342461-72342480 Msa0570250:three_prime_UTR 25.0%
! TAATAACAAAGGTTCATTGA+AGG - chr4_1:72342625-72342644 None:intergenic 25.0%
!! TGTTTCTCAACCTTTAGTTT+TGG - chr4_1:72341499-72341518 None:intergenic 30.0%
ATGTTGAAATTTCGTCCATT+GGG - chr4_1:72341786-72341805 None:intergenic 30.0%
AATGTTGAAATTTCGTCCAT+TGG - chr4_1:72341787-72341806 None:intergenic 30.0%
TTCTCAAATATGACCTTGAA+TGG + chr4_1:72341826-72341845 Msa0570250:CDS 30.0%
AAAGTGACTCAATATGATGT+TGG + chr4_1:72341900-72341919 Msa0570250:CDS 30.0%
!! CTTGATGGTGCTAATTATTT+GGG + chr4_1:72341942-72341961 Msa0570250:CDS 30.0%
!!! TCCTGTCTATTGTTTTAGTA+AGG + chr4_1:72342246-72342265 Msa0570250:CDS 30.0%
!!! CTATTGTTGATGATTTTCGT+TGG + chr4_1:72342332-72342351 Msa0570250:CDS 30.0%
AATCATATGATATTGTTGGG+TGG - chr4_1:72342383-72342402 None:intergenic 30.0%
!!! TAATAATCTTTGTTTTGGGG+AGG + chr4_1:72342427-72342446 Msa0570250:three_prime_UTR 30.0%
GGTTTATAATAAGCTTTGCT+TGG + chr4_1:72342460-72342479 Msa0570250:three_prime_UTR 30.0%
!! ACAACTTGAAGGTTTGTTTT+AGG + chr4_1:72342536-72342555 Msa0570250:three_prime_UTR 30.0%
!! TGTTTCTCAACCTTTAGTTT+TGG - chr4_1:72341499-72341518 None:intergenic 30.0%
ATGTTGAAATTTCGTCCATT+GGG - chr4_1:72341786-72341805 None:intergenic 30.0%
AATGTTGAAATTTCGTCCAT+TGG - chr4_1:72341787-72341806 None:intergenic 30.0%
TTCTCAAATATGACCTTGAA+TGG + chr4_1:72341826-72341845 Msa0570250:CDS 30.0%
AAAGTGACTCAATATGATGT+TGG + chr4_1:72341900-72341919 Msa0570250:CDS 30.0%
!! CTTGATGGTGCTAATTATTT+GGG + chr4_1:72341942-72341961 Msa0570250:CDS 30.0%
!!! TCCTGTCTATTGTTTTAGTA+AGG + chr4_1:72342246-72342265 Msa0570250:CDS 30.0%
!!! CTATTGTTGATGATTTTCGT+TGG + chr4_1:72342332-72342351 Msa0570250:CDS 30.0%
AATCATATGATATTGTTGGG+TGG - chr4_1:72342383-72342402 None:intergenic 30.0%
!!! TAATAATCTTTGTTTTGGGG+AGG + chr4_1:72342427-72342446 Msa0570250:three_prime_UTR 30.0%
GGTTTATAATAAGCTTTGCT+TGG + chr4_1:72342460-72342479 Msa0570250:three_prime_UTR 30.0%
!! ACAACTTGAAGGTTTGTTTT+AGG + chr4_1:72342536-72342555 Msa0570250:three_prime_UTR 30.0%
AATATCGTGGATCTTCACTT+CGG - chr4_1:72341411-72341430 None:intergenic 35.0%
! CTTAACTTGATGGGAAGTAA+CGG + chr4_1:72341458-72341477 Msa0570250:five_prime_UTR 35.0%
CAAACAAATGCATTCTTCTG+TGG - chr4_1:72341619-72341638 None:intergenic 35.0%
CTCTTCGAAAACAAGACTTA+TGG + chr4_1:72341751-72341770 Msa0570250:CDS 35.0%
AACAAGACTTATGGTACGAT+TGG + chr4_1:72341760-72341779 Msa0570250:CDS 35.0%
CATATTTGAGAACATCAAGC+TGG - chr4_1:72341818-72341837 None:intergenic 35.0%
TATGACCTTGAATGGAACAA+TGG + chr4_1:72341834-72341853 Msa0570250:CDS 35.0%
!! GCTTGATGGTGCTAATTATT+TGG + chr4_1:72341941-72341960 Msa0570250:CDS 35.0%
GGGAGAAAGTGGAATTTATT+TGG + chr4_1:72342000-72342019 Msa0570250:CDS 35.0%
TACTGATGTGATGACATTTG+AGG + chr4_1:72342189-72342208 Msa0570250:CDS 35.0%
GCCTTACTAAAACAATAGAC+AGG - chr4_1:72342250-72342269 None:intergenic 35.0%
!!! CTATTGTTTTAGTAAGGCTG+AGG + chr4_1:72342252-72342271 Msa0570250:CDS 35.0%
ACTAATGAGTGAGATGAGAT+AGG + chr4_1:72342357-72342376 Msa0570250:CDS 35.0%
ATCTACTATGTACCTATTGC+TGG + chr4_1:72342652-72342671 Msa0570250:three_prime_UTR 35.0%
AATATCGTGGATCTTCACTT+CGG - chr4_1:72341411-72341430 None:intergenic 35.0%
! CTTAACTTGATGGGAAGTAA+CGG + chr4_1:72341458-72341477 Msa0570250:five_prime_UTR 35.0%
CAAACAAATGCATTCTTCTG+TGG - chr4_1:72341619-72341638 None:intergenic 35.0%
CTCTTCGAAAACAAGACTTA+TGG + chr4_1:72341751-72341770 Msa0570250:CDS 35.0%
AACAAGACTTATGGTACGAT+TGG + chr4_1:72341760-72341779 Msa0570250:CDS 35.0%
CATATTTGAGAACATCAAGC+TGG - chr4_1:72341818-72341837 None:intergenic 35.0%
TATGACCTTGAATGGAACAA+TGG + chr4_1:72341834-72341853 Msa0570250:CDS 35.0%
!! GCTTGATGGTGCTAATTATT+TGG + chr4_1:72341941-72341960 Msa0570250:CDS 35.0%
GGGAGAAAGTGGAATTTATT+TGG + chr4_1:72342000-72342019 Msa0570250:CDS 35.0%
TACTGATGTGATGACATTTG+AGG + chr4_1:72342189-72342208 Msa0570250:CDS 35.0%
GCCTTACTAAAACAATAGAC+AGG - chr4_1:72342250-72342269 None:intergenic 35.0%
!!! CTATTGTTTTAGTAAGGCTG+AGG + chr4_1:72342252-72342271 Msa0570250:CDS 35.0%
ACTAATGAGTGAGATGAGAT+AGG + chr4_1:72342357-72342376 Msa0570250:CDS 35.0%
ATCTACTATGTACCTATTGC+TGG + chr4_1:72342652-72342671 Msa0570250:three_prime_UTR 35.0%
GCAGCTTCTTACAAATATCG+TGG - chr4_1:72341424-72341443 None:intergenic 40.0%
CGTTACTTCCCATCAAGTTA+AGG - chr4_1:72341460-72341479 None:intergenic 40.0%
ATTCACCCAGCCAAAACTAA+AGG + chr4_1:72341486-72341505 Msa0570250:five_prime_UTR 40.0%
!!! CTCAACCTTTAGTTTTGGCT+GGG - chr4_1:72341494-72341513 None:intergenic 40.0%
!!! TCTCAACCTTTAGTTTTGGC+TGG - chr4_1:72341495-72341514 None:intergenic 40.0%
!! ATTGCTTTGCTGATTTCGGA+AGG - chr4_1:72341588-72341607 None:intergenic 40.0%
TTCCGAAATCAGCAAAGCAA+TGG + chr4_1:72341587-72341606 Msa0570250:exon 40.0%
TGAGAACATCAAGCTGGTAT+TGG - chr4_1:72341812-72341831 None:intergenic 40.0%
TTAGCACCATCAAGCCAATT+GGG - chr4_1:72341936-72341955 None:intergenic 40.0%
ATTAGCACCATCAAGCCAAT+TGG - chr4_1:72341937-72341956 None:intergenic 40.0%
GTGTAATGTTTGGGAGAAAG+TGG + chr4_1:72341989-72342008 Msa0570250:CDS 40.0%
TCACTAAAAGACCTGTCAAG+TGG + chr4_1:72342039-72342058 Msa0570250:CDS 40.0%
ATATGATGATTGGTGAGTGC+AGG + chr4_1:72342160-72342179 Msa0570250:intron 40.0%
! GATGTGATGACATTTGAGGT+TGG + chr4_1:72342193-72342212 Msa0570250:CDS 40.0%
AACCCCAAATACACAACAGA+AGG + chr4_1:72342281-72342300 Msa0570250:CDS 40.0%
CTCCTTCTGTTGTGTATTTG+GGG - chr4_1:72342286-72342305 None:intergenic 40.0%
GCTCCTTCTGTTGTGTATTT+GGG - chr4_1:72342287-72342306 None:intergenic 40.0%
TGCTCCTTCTGTTGTGTATT+TGG - chr4_1:72342288-72342307 None:intergenic 40.0%
CTTATTATAAACCAGCACCG+AGG - chr4_1:72342453-72342472 None:intergenic 40.0%
GTTGAGTAGCAACAACTTGA+AGG + chr4_1:72342525-72342544 Msa0570250:three_prime_UTR 40.0%
!!! GAAGGTTTGTTTTAGGCTAG+TGG + chr4_1:72342543-72342562 Msa0570250:three_prime_UTR 40.0%
TACTATGTACCTATTGCTGG+TGG + chr4_1:72342655-72342674 Msa0570250:three_prime_UTR 40.0%
ATGATACAACCACCAGCAAT+AGG - chr4_1:72342667-72342686 None:intergenic 40.0%
GCAGCTTCTTACAAATATCG+TGG - chr4_1:72341424-72341443 None:intergenic 40.0%
CGTTACTTCCCATCAAGTTA+AGG - chr4_1:72341460-72341479 None:intergenic 40.0%
ATTCACCCAGCCAAAACTAA+AGG + chr4_1:72341486-72341505 Msa0570250:five_prime_UTR 40.0%
!!! CTCAACCTTTAGTTTTGGCT+GGG - chr4_1:72341494-72341513 None:intergenic 40.0%
!!! TCTCAACCTTTAGTTTTGGC+TGG - chr4_1:72341495-72341514 None:intergenic 40.0%
!! ATTGCTTTGCTGATTTCGGA+AGG - chr4_1:72341588-72341607 None:intergenic 40.0%
TTCCGAAATCAGCAAAGCAA+TGG + chr4_1:72341587-72341606 Msa0570250:exon 40.0%
TGAGAACATCAAGCTGGTAT+TGG - chr4_1:72341812-72341831 None:intergenic 40.0%
TTAGCACCATCAAGCCAATT+GGG - chr4_1:72341936-72341955 None:intergenic 40.0%
ATTAGCACCATCAAGCCAAT+TGG - chr4_1:72341937-72341956 None:intergenic 40.0%
GTGTAATGTTTGGGAGAAAG+TGG + chr4_1:72341989-72342008 Msa0570250:CDS 40.0%
TCACTAAAAGACCTGTCAAG+TGG + chr4_1:72342039-72342058 Msa0570250:CDS 40.0%
ATATGATGATTGGTGAGTGC+AGG + chr4_1:72342160-72342179 Msa0570250:intron 40.0%
! GATGTGATGACATTTGAGGT+TGG + chr4_1:72342193-72342212 Msa0570250:CDS 40.0%
AACCCCAAATACACAACAGA+AGG + chr4_1:72342281-72342300 Msa0570250:CDS 40.0%
CTCCTTCTGTTGTGTATTTG+GGG - chr4_1:72342286-72342305 None:intergenic 40.0%
GCTCCTTCTGTTGTGTATTT+GGG - chr4_1:72342287-72342306 None:intergenic 40.0%
TGCTCCTTCTGTTGTGTATT+TGG - chr4_1:72342288-72342307 None:intergenic 40.0%
CTTATTATAAACCAGCACCG+AGG - chr4_1:72342453-72342472 None:intergenic 40.0%
GTTGAGTAGCAACAACTTGA+AGG + chr4_1:72342525-72342544 Msa0570250:three_prime_UTR 40.0%
!!! GAAGGTTTGTTTTAGGCTAG+TGG + chr4_1:72342543-72342562 Msa0570250:three_prime_UTR 40.0%
TACTATGTACCTATTGCTGG+TGG + chr4_1:72342655-72342674 Msa0570250:three_prime_UTR 40.0%
ATGATACAACCACCAGCAAT+AGG - chr4_1:72342667-72342686 None:intergenic 40.0%
CAGTATGAACGACGTGGATA+AGG - chr4_1:72341546-72341565 None:intergenic 45.0%
CAGTATCAGTATGAACGACG+TGG - chr4_1:72341552-72341571 None:intergenic 45.0%
!! GGCCATTGCTTTGCTGATTT+CGG - chr4_1:72341592-72341611 None:intergenic 45.0%
AATGCATTCTTCTGTGGCAG+AGG - chr4_1:72341613-72341632 None:intergenic 45.0%
AGGTTGAGAGATGAAGGAAG+AGG - chr4_1:72341656-72341675 None:intergenic 45.0%
! TTATGGTACGATTGGCCCAA+TGG + chr4_1:72341768-72341787 Msa0570250:CDS 45.0%
!! TGGTGCCATTGTTCCATTCA+AGG - chr4_1:72341842-72341861 None:intergenic 45.0%
CTTTGCAAGTGTGCTCGAAA+GGG - chr4_1:72341884-72341903 None:intergenic 45.0%
ACTTTGCAAGTGTGCTCGAA+AGG - chr4_1:72341885-72341904 None:intergenic 45.0%
TTGGTATTCCACGACCCAAT+TGG + chr4_1:72341919-72341938 Msa0570250:CDS 45.0%
TCGTAGAAGATCCACTTGAC+AGG - chr4_1:72342053-72342072 None:intergenic 45.0%
GTCAAGTGGATCTTCTACGA+CGG + chr4_1:72342053-72342072 Msa0570250:CDS 45.0%
CAGTACTAGATGATGCCCAT+TGG + chr4_1:72342218-72342237 Msa0570250:CDS 45.0%
CAGTATGAACGACGTGGATA+AGG - chr4_1:72341546-72341565 None:intergenic 45.0%
CAGTATCAGTATGAACGACG+TGG - chr4_1:72341552-72341571 None:intergenic 45.0%
!! GGCCATTGCTTTGCTGATTT+CGG - chr4_1:72341592-72341611 None:intergenic 45.0%
AATGCATTCTTCTGTGGCAG+AGG - chr4_1:72341613-72341632 None:intergenic 45.0%
AGGTTGAGAGATGAAGGAAG+AGG - chr4_1:72341656-72341675 None:intergenic 45.0%
! TTATGGTACGATTGGCCCAA+TGG + chr4_1:72341768-72341787 Msa0570250:CDS 45.0%
!! TGGTGCCATTGTTCCATTCA+AGG - chr4_1:72341842-72341861 None:intergenic 45.0%
CTTTGCAAGTGTGCTCGAAA+GGG - chr4_1:72341884-72341903 None:intergenic 45.0%
ACTTTGCAAGTGTGCTCGAA+AGG - chr4_1:72341885-72341904 None:intergenic 45.0%
TTGGTATTCCACGACCCAAT+TGG + chr4_1:72341919-72341938 Msa0570250:CDS 45.0%
TCGTAGAAGATCCACTTGAC+AGG - chr4_1:72342053-72342072 None:intergenic 45.0%
GTCAAGTGGATCTTCTACGA+CGG + chr4_1:72342053-72342072 Msa0570250:CDS 45.0%
CAGTACTAGATGATGCCCAT+TGG + chr4_1:72342218-72342237 Msa0570250:CDS 45.0%
AGGACTGAGTGGAACTGTTC+CGG - chr4_1:72341711-72341730 None:intergenic 50.0%
TGTTGAGGAGTAGGACTGAG+TGG - chr4_1:72341722-72341741 None:intergenic 50.0%
GTCCTACTCCTCAACAGAAG+CGG + chr4_1:72341726-72341745 Msa0570250:CDS 50.0%
! GTCGAGAGTGTAGAGAAAGG+TGG - chr4_1:72341862-72341881 None:intergenic 50.0%
! AGGGTCGAGAGTGTAGAGAA+AGG - chr4_1:72341865-72341884 None:intergenic 50.0%
ACTAGATGATGCCCATTGGC+AGG + chr4_1:72342222-72342241 Msa0570250:CDS 50.0%
ATAGACAGGAGCCTGCCAAT+GGG - chr4_1:72342236-72342255 None:intergenic 50.0%
AATAGACAGGAGCCTGCCAA+TGG - chr4_1:72342237-72342256 None:intergenic 50.0%
!!! TCTTTGTTTTGGGGAGGCCT+CGG + chr4_1:72342433-72342452 Msa0570250:three_prime_UTR 50.0%
AGGACTGAGTGGAACTGTTC+CGG - chr4_1:72341711-72341730 None:intergenic 50.0%
TGTTGAGGAGTAGGACTGAG+TGG - chr4_1:72341722-72341741 None:intergenic 50.0%
GTCCTACTCCTCAACAGAAG+CGG + chr4_1:72341726-72341745 Msa0570250:CDS 50.0%
! GTCGAGAGTGTAGAGAAAGG+TGG - chr4_1:72341862-72341881 None:intergenic 50.0%
! AGGGTCGAGAGTGTAGAGAA+AGG - chr4_1:72341865-72341884 None:intergenic 50.0%
ACTAGATGATGCCCATTGGC+AGG + chr4_1:72342222-72342241 Msa0570250:CDS 50.0%
ATAGACAGGAGCCTGCCAAT+GGG - chr4_1:72342236-72342255 None:intergenic 50.0%
AATAGACAGGAGCCTGCCAA+TGG - chr4_1:72342237-72342256 None:intergenic 50.0%
!!! TCTTTGTTTTGGGGAGGCCT+CGG + chr4_1:72342433-72342452 Msa0570250:three_prime_UTR 50.0%
CGGTCGAGGTTGAGAGATGA+AGG - chr4_1:72341662-72341681 None:intergenic 55.0%
AGCCGCTTCTGTTGAGGAGT+AGG - chr4_1:72341731-72341750 None:intergenic 55.0%
GAAGAGAGCCGCTTCTGTTG+AGG - chr4_1:72341737-72341756 None:intergenic 55.0%
CCATCAAGCCAATTGGGTCG+TGG - chr4_1:72341930-72341949 None:intergenic 55.0%
!! CCACGACCCAATTGGCTTGA+TGG + chr4_1:72341927-72341946 Msa0570250:CDS 55.0%
CGGTCGAGGTTGAGAGATGA+AGG - chr4_1:72341662-72341681 None:intergenic 55.0%
AGCCGCTTCTGTTGAGGAGT+AGG - chr4_1:72341731-72341750 None:intergenic 55.0%
GAAGAGAGCCGCTTCTGTTG+AGG - chr4_1:72341737-72341756 None:intergenic 55.0%
CCATCAAGCCAATTGGGTCG+TGG - chr4_1:72341930-72341949 None:intergenic 55.0%
!! CCACGACCCAATTGGCTTGA+TGG + chr4_1:72341927-72341946 Msa0570250:CDS 55.0%
TCTCTCAACCTCGACCGCAG+AGG + chr4_1:72341665-72341684 Msa0570250:CDS 60.0%
AATTGGGTCCTCTGCGGTCG+AGG - chr4_1:72341676-72341695 None:intergenic 60.0%
GACCGCAGAGGACCCAATTC+CGG + chr4_1:72341677-72341696 Msa0570250:CDS 60.0%
GAGTGGAACTGTTCCGGCCA+CGG - chr4_1:72341705-72341724 None:intergenic 60.0%
TCTCTCAACCTCGACCGCAG+AGG + chr4_1:72341665-72341684 Msa0570250:CDS 60.0%
AATTGGGTCCTCTGCGGTCG+AGG - chr4_1:72341676-72341695 None:intergenic 60.0%
GACCGCAGAGGACCCAATTC+CGG + chr4_1:72341677-72341696 Msa0570250:CDS 60.0%
GAGTGGAACTGTTCCGGCCA+CGG - chr4_1:72341705-72341724 None:intergenic 60.0%
CGCCGGAATTGGGTCCTCTG+CGG - chr4_1:72341682-72341701 None:intergenic 65.0%
!! TTTTGGGGAGGCCTCGGTGC+TGG + chr4_1:72342439-72342458 Msa0570250:three_prime_UTR 65.0%
CGCCGGAATTGGGTCCTCTG+CGG - chr4_1:72341682-72341701 None:intergenic 65.0%
!! TTTTGGGGAGGCCTCGGTGC+TGG + chr4_1:72342439-72342458 Msa0570250:three_prime_UTR 65.0%
AGGACCCAATTCCGGCGCCG+TGG + chr4_1:72341685-72341704 Msa0570250:CDS 70.0%
AACTGTTCCGGCCACGGCGC+CGG - chr4_1:72341699-72341718 None:intergenic 70.0%
AGGACCCAATTCCGGCGCCG+TGG + chr4_1:72341685-72341704 Msa0570250:CDS 70.0%
AACTGTTCCGGCCACGGCGC+CGG - chr4_1:72341699-72341718 None:intergenic 70.0%
! CCGGCCACGGCGCCGGAATT+GGG - chr4_1:72341692-72341711 None:intergenic 75.0%
CCCAATTCCGGCGCCGTGGC+CGG + chr4_1:72341689-72341708 Msa0570250:CDS 75.0%
! TCCGGCCACGGCGCCGGAAT+TGG - chr4_1:72341693-72341712 None:intergenic 75.0%
! CCGGCCACGGCGCCGGAATT+GGG - chr4_1:72341692-72341711 None:intergenic 75.0%
CCCAATTCCGGCGCCGTGGC+CGG + chr4_1:72341689-72341708 Msa0570250:CDS 75.0%
! TCCGGCCACGGCGCCGGAAT+TGG - chr4_1:72341693-72341712 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 72341385 72342730 72341385 ID=Msa0570250;Name=Msa0570250
chr4_1 mRNA 72341385 72342730 72341385 ID=Msa0570250-mRNA-1;Parent=Msa0570250;Name=Msa0570250-mRNA-1;_AED=0.31;_eAED=0.31;_QI=221|1|1|1|1|1|2|352|221
chr4_1 exon 72341385 72342074 72341385 ID=Msa0570250-mRNA-1:exon:24697;Parent=Msa0570250-mRNA-1
chr4_1 exon 72342182 72342730 72342182 ID=Msa0570250-mRNA-1:exon:24698;Parent=Msa0570250-mRNA-1
chr4_1 five_prime_UTR 72341385 72341605 72341385 ID=Msa0570250-mRNA-1:five_prime_utr;Parent=Msa0570250-mRNA-1
chr4_1 CDS 72341606 72342074 72341606 ID=Msa0570250-mRNA-1:cds;Parent=Msa0570250-mRNA-1
chr4_1 CDS 72342182 72342378 72342182 ID=Msa0570250-mRNA-1:cds;Parent=Msa0570250-mRNA-1
chr4_1 three_prime_UTR 72342379 72342730 72342379 ID=Msa0570250-mRNA-1:three_prime_utr;Parent=Msa0570250-mRNA-1
Gene Sequence

>Msa0570250

ATGGCCTCTGCCACAGAAGAATGCATTTGTTTGTTTTTGTGTCTCTTCCTCTTCCTTCATCTCTCAACCTCGACCGCAGAGGACCCAATTCCGGCGCCGTGGCCGGAACAGTTCCACTCAGTCCTACTCCTCAACAGAAGCGGCTCTCTTCGAAAACAAGACTTATGGTACGATTGGCCCAATGGACGAAATTTCAACATTATCCAATACCAGCTTGATGTTCTCAAATATGACCTTGAATGGAACAATGGCACCACCTTTCTCTACACTCTCGACCCTTTCGAGCACACTTGCAAAGTGACTCAATATGATGTTGGTATTCCACGACCCAATTGGCTTGATGGTGCTAATTATTTGGGTCAACAATATGCCGACAATTTTCTGTGTAATGTTTGGGAGAAAGTGGAATTTATTTGGTACTTTGAAGATGTTCTCACTAAAAGACCTGTCAAGTGGATCTTCTACGACGGAATGATTACTGATGTGATGACATTTGAGGTTGGAGCAGTACTAGATGATGCCCATTGGCAGGCTCCTGTCTATTGTTTTAGTAAGGCTGAGGCTGCTGAACCCCAAATACACAACAGAAGGAGCAGTTTCTCATTAGATTTAGAAGCTGCTATTGTTGATGATTTTCGTTGGACACTAATGAGTGAGATGAGATAG

Protein sequence

>Msa0570250

MASATEECICLFLCLFLFLHLSTSTAEDPIPAPWPEQFHSVLLLNRSGSLRKQDLWYDWPNGRNFNIIQYQLDVLKYDLEWNNGTTFLYTLDPFEHTCKVTQYDVGIPRPNWLDGANYLGQQYADNFLCNVWEKVEFIWYFEDVLTKRPVKWIFYDGMITDVMTFEVGAVLDDAHWQAPVYCFSKAEAAEPQIHNRRSSFSLDLEAAIVDDFRWTLMSEMR*