AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0570490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570490 MtrunA17_Chr8g0382711 98.592 213 3 0 1 213 1 213 1.62e-155 429
Msa0570490 MtrunA17_Chr4g0052911 53.846 130 59 1 76 204 108 237 1.10e-42 144
Msa0570490 MtrunA17_Chr8g0339171 40.000 110 55 2 104 213 46 144 1.09e-19 82.0
Msa0570490 MtrunA17_Chr4g0033841 28.090 178 111 4 36 203 48 218 5.01e-17 76.6
Msa0570490 MtrunA17_Chr5g0396231 39.623 106 50 4 102 206 407 499 1.61e-15 74.7
Msa0570490 MtrunA17_Chr7g0234801 38.235 102 50 3 108 208 52 141 8.71e-13 66.6
Msa0570490 MtrunA17_Chr8g0377771 36.885 122 63 4 89 208 36 145 1.47e-12 65.9
Msa0570490 MtrunA17_Chr8g0339141 36.449 107 55 3 103 208 53 147 8.32e-12 63.9
Msa0570490 MtrunA17_Chr1g0179681 35.075 134 66 5 81 206 123 243 1.34e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0570490 AT4G39710.1 76.471 170 40 0 44 213 48 217 1.11e-94 275
Msa0570490 AT4G39710.3 76.471 170 40 0 44 213 48 217 1.11e-94 275
Msa0570490 AT4G39710.2 75.630 119 29 0 44 162 48 166 2.27e-62 192
Msa0570490 AT5G45680.1 56.911 123 53 0 83 205 84 206 6.53e-44 146
Msa0570490 AT5G48580.1 39.806 103 51 2 104 206 48 139 1.65e-18 79.3
Msa0570490 AT3G25220.1 40.777 103 50 2 104 206 48 139 1.04e-17 77.0
Msa0570490 AT2G43560.1 32.317 164 85 5 49 203 66 212 1.15e-15 73.2
Msa0570490 AT2G43560.2 32.317 164 85 5 49 203 10 156 1.34e-15 72.0
Msa0570490 AT5G05420.1 37.736 106 52 4 102 206 50 142 1.21e-14 68.6
Msa0570490 AT3G25230.1 37.008 127 66 4 84 208 32 146 3.18e-13 68.2
Msa0570490 AT3G25230.2 37.008 127 66 4 84 208 32 146 3.32e-13 68.2
Msa0570490 AT5G48570.1 36.634 101 53 2 108 208 65 154 1.26e-11 63.5
Msa0570490 AT3G10060.1 30.000 160 91 5 55 206 70 216 2.55e-11 61.2

Find 97 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTGGATCAGGGAATTT+TGG 0.124572 4_1:+72622154 Msa0570490:CDS
GATTAATGAAATGGACATTT+TGG 0.163340 4_1:+72623730 Msa0570490:intron
GGATCCTCTTTACTCTTAAA+AGG 0.163499 4_1:-72623859 None:intergenic
GCAAAGATGAATCATGATTT+TGG 0.221122 4_1:+72624092 Msa0570490:three_prime_UTR
AGTTAAAATGTACAATTTCT+TGG 0.227295 4_1:+72624133 Msa0570490:three_prime_UTR
AATGTGAATTTCAGGTAATT+AGG 0.235234 4_1:+72622132 Msa0570490:intron
TAAATTTGTTGGTCTTTATT+CGG 0.242676 4_1:+72622940 Msa0570490:CDS
TACTCTTAAAAGGGGTATTC+AGG 0.261225 4_1:-72623849 None:intergenic
TGCTGAGCATAACACCTTAT+TGG 0.271308 4_1:-72621629 None:intergenic
TGTGATTATGTTGAGGGTTT+TGG 0.277118 4_1:+72621820 Msa0570490:CDS
GGATGAAAGATACAAGTAAT+AGG 0.280772 4_1:-72624029 None:intergenic
GGTAATTAGGGGATTGGATC+AGG 0.291509 4_1:+72622145 Msa0570490:intron
GAGCTTAATTATGTTAAATC+TGG 0.297049 4_1:+72621787 Msa0570490:CDS
GTTAGGCAGATTCTCCTTCC+TGG 0.307741 4_1:+72623774 Msa0570490:three_prime_UTR
AAATTTGTTGGTCTTTATTC+GGG 0.311128 4_1:+72622941 Msa0570490:CDS
CTGTATGATATTAAATTTGT+TGG 0.318710 4_1:+72622929 Msa0570490:CDS
ACAGACACTAAGATAGAAAA+TGG 0.322917 4_1:+72621519 Msa0570490:exon
CGTTAGTTGGAATTGGTATT+GGG 0.335154 4_1:+72621674 Msa0570490:CDS
ATGTGAATTTCAGGTAATTA+GGG 0.335286 4_1:+72622133 Msa0570490:intron
GAACCTGCAGGCTGCTTCTC+AGG 0.336346 4_1:+72622338 Msa0570490:CDS
TTTGGTGATGAAGCTCCTTT+AGG 0.338411 4_1:+72621838 Msa0570490:CDS
GAGAAGCAGCCTGCAGGTTC+AGG 0.345343 4_1:-72622335 None:intergenic
AATTGTTTAGATTAATGAAA+TGG 0.357207 4_1:+72623721 Msa0570490:intron
CTCTCATTCTCACTCTGTTC+AGG 0.375218 4_1:+72621544 Msa0570490:CDS
AAGAAGCCGTTAGTTGGAAT+TGG 0.375819 4_1:+72621667 Msa0570490:CDS
CCGTTAGTTGGAATTGGTAT+TGG 0.376392 4_1:+72621673 Msa0570490:CDS
ATATGAACCGCACGTGGATT+AGG 0.387620 4_1:+72623008 Msa0570490:three_prime_UTR
GGTTATTGTGATTATGTTGA+GGG 0.390983 4_1:+72621814 Msa0570490:CDS
CCTTCTTGTATGAAATTGAA+TGG 0.401384 4_1:+72621589 Msa0570490:CDS
CATGTCCAACTGCACTAAAC+AGG 0.407915 4_1:-72623821 None:intergenic
GATCCTCTTTACTCTTAAAA+GGG 0.410956 4_1:-72623858 None:intergenic
AATTATGTTAAATCTGGGCT+TGG 0.422396 4_1:+72621793 Msa0570490:CDS
ATTGTAGCAGCATGGGTAAT+GGG 0.427828 4_1:+72621697 Msa0570490:CDS
GATGAAAGATACAAGTAATA+GGG 0.430280 4_1:-72624028 None:intergenic
TTTCAATATTGCACTCTGAA+TGG 0.431230 4_1:+72623971 Msa0570490:three_prime_UTR
ATTTCAGGTAATTAGGGGAT+TGG 0.431931 4_1:+72622139 Msa0570490:intron
AACGAAAAGAAGCCGTTAGT+TGG 0.432641 4_1:+72621661 Msa0570490:CDS
CTATTCCTGTTTAGTGCAGT+TGG 0.438216 4_1:+72623816 Msa0570490:three_prime_UTR
ATGATATGAGTAACTCCATT+TGG 0.450015 4_1:-72621459 None:intergenic
GGGATTAACGGCGTTGGATG+CGG 0.454068 4_1:+72621717 Msa0570490:CDS
AGCTTAATTATGTTAAATCT+GGG 0.462974 4_1:+72621788 Msa0570490:CDS
AAGTTATAAAGTATCCAATA+AGG 0.464158 4_1:+72621615 Msa0570490:CDS
GTGTGCTGTTTGCAATGAAA+TGG 0.477161 4_1:+72624070 Msa0570490:three_prime_UTR
AGCATGGGTAATGGGATTAA+CGG 0.477643 4_1:+72621705 Msa0570490:CDS
CACAGAGGAAGAAGATCAAA+AGG 0.482520 4_1:-72624050 None:intergenic
AATAGGTGACTGCAATATAC+CGG 0.483379 4_1:+72622892 Msa0570490:intron
ATTTCATACAAGAAGGAAAA+CGG 0.483988 4_1:-72621582 None:intergenic
CCATTCAATTTCATACAAGA+AGG 0.487470 4_1:-72621589 None:intergenic
GATTGTAGCAGCATGGGTAA+TGG 0.497305 4_1:+72621696 Msa0570490:CDS
TGAGTGAGGATCAACTTGTT+AGG 0.500172 4_1:+72623757 Msa0570490:three_prime_UTR
TGGTTATTGTGATTATGTTG+AGG 0.508666 4_1:+72621813 Msa0570490:CDS
TGATATATATTAGACAAGTC+TGG 0.509545 4_1:+72623895 Msa0570490:three_prime_UTR
AGAAAGGATGGTATGCCAAA+TGG 0.512086 4_1:+72621444 None:intergenic
ATTCCTCCATTGTTAGCGTA+TGG 0.515896 4_1:+72622311 Msa0570490:CDS
TGTGTGTATATAGTTCTCTA+AGG 0.516338 4_1:-72621497 None:intergenic
AATTTGAGAGAGCTGGAACC+AGG 0.519696 4_1:-72623792 None:intergenic
ATATATCACCGCACCAGAGT+TGG 0.530324 4_1:-72623880 None:intergenic
AAACCTGAGAAGCAGCCTGC+AGG 0.532161 4_1:-72622341 None:intergenic
TACAGAAGAGTTGCATTGCC+CGG 0.539306 4_1:-72622911 None:intergenic
GAATAGTAATTTGAGAGAGC+TGG 0.541808 4_1:-72623799 None:intergenic
AATATAATACCTATCCGCAT+TGG 0.544357 4_1:-72622194 None:intergenic
GGTAATGGGATTAACGGCGT+TGG 0.544791 4_1:+72621711 Msa0570490:CDS
AGGCCACTCACTATGCGTAT+TGG 0.545910 4_1:+72622026 Msa0570490:CDS
CAATATTGCACTCTGAATGG+TGG 0.547408 4_1:+72623974 Msa0570490:three_prime_UTR
ACATCAATAAGCTCTCCTAA+AGG 0.553954 4_1:-72621853 None:intergenic
ATAATACCTATCCGCATTGG+AGG 0.554118 4_1:-72622191 None:intergenic
GCGTATGGTCCTGAACCTGC+AGG 0.559980 4_1:+72622326 Msa0570490:CDS
CTCACTATGCGTATTGGTGT+TGG 0.565060 4_1:+72622032 Msa0570490:CDS
ATAGTAGTTATAAACGTGCT+AGG 0.567467 4_1:+72622006 Msa0570490:CDS
TATTGGGATTGTAGCAGCAT+GGG 0.571835 4_1:+72621690 Msa0570490:CDS
TCAATGAAGTCAAAATTGAT+CGG 0.581630 4_1:+72622973 Msa0570490:exon
GAGTAAAGAGGATCCAACTC+TGG 0.582557 4_1:+72623867 Msa0570490:three_prime_UTR
GCCACATGGTGTAGAAAGGA+TGG 0.591372 4_1:+72621432 None:intergenic
AATTGAATACTATGCTACTG+TGG 0.592481 4_1:+72621750 Msa0570490:CDS
GTAATTAGGGGATTGGATCA+GGG 0.593610 4_1:+72622146 Msa0570490:CDS
ATTGAATACTATGCTACTGT+GGG 0.611936 4_1:+72621751 Msa0570490:CDS
ATCCTCTTTACTCTTAAAAG+GGG 0.619462 4_1:-72623857 None:intergenic
CCAATACCAATTCCAACTAA+CGG 0.620051 4_1:-72621673 None:intergenic
TGAGAGAGCTGGAACCAGGA+AGG 0.621370 4_1:-72623788 None:intergenic
TATGCGTATTGGTGTTGGCA+AGG 0.622438 4_1:+72622037 Msa0570490:CDS
GTATTGGGATTGTAGCAGCA+TGG 0.623097 4_1:+72621689 Msa0570490:CDS
TGTGAATTTCAGGTAATTAG+GGG 0.623369 4_1:+72622134 Msa0570490:intron
ACATAATTAAGCTCACACAT+TGG 0.625130 4_1:-72621778 None:intergenic
AGAAGGAAAACGGTTATGAA+CGG 0.643601 4_1:-72621572 None:intergenic
GTGTTATGCTCAGCACGTAA+CGG 0.647081 4_1:+72621637 Msa0570490:CDS
ATAGGTGACTGCAATATACC+GGG 0.650180 4_1:+72622893 Msa0570490:intron
GGCGTGCCTCCAATGCGGAT+AGG 0.651340 4_1:+72622185 Msa0570490:CDS
TCAGGACCATACGCTAACAA+TGG 0.656714 4_1:-72622317 None:intergenic
ACTATCGAATACTATTCCAT+CGG 0.660108 4_1:-72621988 None:intergenic
GGACCATACGCTAACAATGG+AGG 0.666829 4_1:-72622314 None:intergenic
ATACACATATGAACCGCACG+TGG 0.667589 4_1:+72623002 Msa0570490:three_prime_UTR
ACACCAATACGCATAGTGAG+TGG 0.668322 4_1:-72622029 None:intergenic
AAGAGGATCCAACTCTGGTG+CGG 0.676952 4_1:+72623872 Msa0570490:three_prime_UTR
TATACTGCTAGATTCGCCGA+TGG 0.684653 4_1:+72621972 Msa0570490:CDS
GTGAAGGCGTGCCTCCAATG+CGG 0.705907 4_1:+72622180 Msa0570490:CDS
AAATTCACCTAATCCACGTG+CGG 0.710191 4_1:-72623015 None:intergenic
TCATTGCAAACAGCACACAG+AGG 0.755533 4_1:-72624065 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTACTATTTTTACTT+AGG + chr4_1:72622269-72622288 Msa0570490:intron 10.0%
!! AATTGTTTAGATTAATGAAA+TGG + chr4_1:72623721-72623740 Msa0570490:intron 15.0%
!!! AAGTTATAAAGTATCCAATA+AGG + chr4_1:72621615-72621634 Msa0570490:CDS 20.0%
!! AGCTTAATTATGTTAAATCT+GGG + chr4_1:72621788-72621807 Msa0570490:CDS 20.0%
!!! ATTTACTATTTTTACTTAGG+TGG + chr4_1:72622272-72622291 Msa0570490:intron 20.0%
!!! TTTACTATTTTTACTTAGGT+GGG + chr4_1:72622273-72622292 Msa0570490:intron 20.0%
!! TGAAACATTAATTGTGTATT+TGG + chr4_1:72622472-72622491 Msa0570490:intron 20.0%
!! ACATTGGTAGAAAATATATT+GGG - chr4_1:72622521-72622540 None:intergenic 20.0%
!! TACATTGGTAGAAAATATAT+TGG - chr4_1:72622522-72622541 None:intergenic 20.0%
!! AGTAGCAACTTATTTAAATT+CGG - chr4_1:72622566-72622585 None:intergenic 20.0%
!!! TTGTGTTTTTCTTAATTGAA+AGG + chr4_1:72622744-72622763 Msa0570490:intron 20.0%
!! CTGTATGATATTAAATTTGT+TGG + chr4_1:72622929-72622948 Msa0570490:CDS 20.0%
!!! TAAATTTGTTGGTCTTTATT+CGG + chr4_1:72622940-72622959 Msa0570490:CDS 20.0%
!!! TAAACTAATACATTTTTCTC+TGG + chr4_1:72623579-72623598 Msa0570490:intron 20.0%
!! AGTTAAAATGTACAATTTCT+TGG + chr4_1:72624133-72624152 Msa0570490:three_prime_UTR 20.0%
! ATTTCATACAAGAAGGAAAA+CGG - chr4_1:72621585-72621604 None:intergenic 25.0%
! GAGCTTAATTATGTTAAATC+TGG + chr4_1:72621787-72621806 Msa0570490:CDS 25.0%
!!! TTTCATGTTTTTGTTGAGTT+TGG + chr4_1:72622096-72622115 Msa0570490:intron 25.0%
!! AATGTGAATTTCAGGTAATT+AGG + chr4_1:72622132-72622151 Msa0570490:intron 25.0%
!! ATGTGAATTTCAGGTAATTA+GGG + chr4_1:72622133-72622152 Msa0570490:intron 25.0%
! TAAAAAATGTAGTAGACACT+TGG + chr4_1:72622440-72622459 Msa0570490:intron 25.0%
! ATTGGTAGAAAATATATTGG+GGG - chr4_1:72622519-72622538 None:intergenic 25.0%
! CATTGGTAGAAAATATATTG+GGG - chr4_1:72622520-72622539 None:intergenic 25.0%
! GAATTTAAATAAGTTGCTAC+TGG + chr4_1:72622565-72622584 Msa0570490:intron 25.0%
!! ATTAAACCATGGATTTTGTT+AGG + chr4_1:72622770-72622789 Msa0570490:intron 25.0%
!!! AAATTTGTTGGTCTTTATTC+GGG + chr4_1:72622941-72622960 Msa0570490:CDS 25.0%
! TCAATGAAGTCAAAATTGAT+CGG + chr4_1:72622973-72622992 Msa0570490:exon 25.0%
! CAAAATATTCTCAAAAGATC+AGG - chr4_1:72623041-72623060 None:intergenic 25.0%
!! CTGTTTAAAATATTGACACA+GGG + chr4_1:72623318-72623337 Msa0570490:intron 25.0%
!! AACATTTTTCTTGTGCAATA+TGG + chr4_1:72623350-72623369 Msa0570490:intron 25.0%
! CATTCATCTTAAATATCACT+CGG - chr4_1:72623483-72623502 None:intergenic 25.0%
!! AGTGATATTTAAGATGAATG+AGG + chr4_1:72623483-72623502 Msa0570490:intron 25.0%
!!! GCGTATCATTATAGTTTTAA+AGG - chr4_1:72623617-72623636 None:intergenic 25.0%
! TTAAAACTATAATGATACGC+CGG + chr4_1:72623617-72623636 Msa0570490:intron 25.0%
!!! GGTCTTGATTTTCTAAAAAT+AGG + chr4_1:72623656-72623675 Msa0570490:intron 25.0%
!! GATTAATGAAATGGACATTT+TGG + chr4_1:72623730-72623749 Msa0570490:intron 25.0%
! TGATATATATTAGACAAGTC+TGG + chr4_1:72623895-72623914 Msa0570490:three_prime_UTR 25.0%
! GATGAAAGATACAAGTAATA+GGG - chr4_1:72624031-72624050 None:intergenic 25.0%
ATGATATGAGTAACTCCATT+TGG - chr4_1:72621462-72621481 None:intergenic 30.0%
TGTGTGTATATAGTTCTCTA+AGG - chr4_1:72621500-72621519 None:intergenic 30.0%
ACAGACACTAAGATAGAAAA+TGG + chr4_1:72621519-72621538 Msa0570490:exon 30.0%
CCATTCAATTTCATACAAGA+AGG - chr4_1:72621592-72621611 None:intergenic 30.0%
CCTTCTTGTATGAAATTGAA+TGG + chr4_1:72621589-72621608 Msa0570490:CDS 30.0%
AATTGAATACTATGCTACTG+TGG + chr4_1:72621750-72621769 Msa0570490:CDS 30.0%
ATTGAATACTATGCTACTGT+GGG + chr4_1:72621751-72621770 Msa0570490:CDS 30.0%
ACATAATTAAGCTCACACAT+TGG - chr4_1:72621781-72621800 None:intergenic 30.0%
AATTATGTTAAATCTGGGCT+TGG + chr4_1:72621793-72621812 Msa0570490:CDS 30.0%
TGGTTATTGTGATTATGTTG+AGG + chr4_1:72621813-72621832 Msa0570490:CDS 30.0%
GGTTATTGTGATTATGTTGA+GGG + chr4_1:72621814-72621833 Msa0570490:CDS 30.0%
ACTATCGAATACTATTCCAT+CGG - chr4_1:72621991-72622010 None:intergenic 30.0%
ATAGTAGTTATAAACGTGCT+AGG + chr4_1:72622006-72622025 Msa0570490:CDS 30.0%
! TGTGAATTTCAGGTAATTAG+GGG + chr4_1:72622134-72622153 Msa0570490:intron 30.0%
AATATAATACCTATCCGCAT+TGG - chr4_1:72622197-72622216 None:intergenic 30.0%
! GTTTAAGTTTCATGCATTCA+TGG + chr4_1:72622228-72622247 Msa0570490:intron 30.0%
!! GTGTAATTTGCTACTAAACA+TGG + chr4_1:72622391-72622410 Msa0570490:intron 30.0%
TTGGTAGAAAATATATTGGG+GGG - chr4_1:72622518-72622537 None:intergenic 30.0%
!!! TGTAGCTGCTTTTTTTACAT+TGG - chr4_1:72622537-72622556 None:intergenic 30.0%
AGCACACACAAAAACAAATT+CGG - chr4_1:72622719-72622738 None:intergenic 30.0%
!! TTGAAAGGAGTATTAAACCA+TGG + chr4_1:72622759-72622778 Msa0570490:intron 30.0%
TTACATGACATGGTCAATAT+TGG - chr4_1:72623190-72623209 None:intergenic 30.0%
! CATACTGTGTTTTATCATGA+AGG - chr4_1:72623252-72623271 None:intergenic 30.0%
! GCTGTTTAAAATATTGACAC+AGG + chr4_1:72623317-72623336 Msa0570490:intron 30.0%
CACAAGAAAAATGTTCACAA+AGG - chr4_1:72623345-72623364 None:intergenic 30.0%
CATTATTAACCTTATCCTAG+TGG + chr4_1:72623414-72623433 Msa0570490:intron 30.0%
ATCCTCTTTACTCTTAAAAG+GGG - chr4_1:72623860-72623879 None:intergenic 30.0%
GATCCTCTTTACTCTTAAAA+GGG - chr4_1:72623861-72623880 None:intergenic 30.0%
TTTCAATATTGCACTCTGAA+TGG + chr4_1:72623971-72623990 Msa0570490:three_prime_UTR 30.0%
GGATGAAAGATACAAGTAAT+AGG - chr4_1:72624032-72624051 None:intergenic 30.0%
! GCAAAGATGAATCATGATTT+TGG + chr4_1:72624092-72624111 Msa0570490:three_prime_UTR 30.0%
! AGATGAATCATGATTTTGGA+TGG + chr4_1:72624096-72624115 Msa0570490:three_prime_UTR 30.0%
AGAAGGAAAACGGTTATGAA+CGG - chr4_1:72621575-72621594 None:intergenic 35.0%
CCAATACCAATTCCAACTAA+CGG - chr4_1:72621676-72621695 None:intergenic 35.0%
CGTTAGTTGGAATTGGTATT+GGG + chr4_1:72621674-72621693 Msa0570490:CDS 35.0%
! TGTGATTATGTTGAGGGTTT+TGG + chr4_1:72621820-72621839 Msa0570490:CDS 35.0%
ACATCAATAAGCTCTCCTAA+AGG - chr4_1:72621856-72621875 None:intergenic 35.0%
TTGTTGAGTTTGGACTTACA+AGG + chr4_1:72622106-72622125 Msa0570490:intron 35.0%
TGTTGAGTTTGGACTTACAA+GGG + chr4_1:72622107-72622126 Msa0570490:intron 35.0%
! ATTTCAGGTAATTAGGGGAT+TGG + chr4_1:72622139-72622158 Msa0570490:intron 35.0%
!!! AGTTTTGTCGCTGATTCAAT+AGG + chr4_1:72622875-72622894 Msa0570490:intron 35.0%
AATAGGTGACTGCAATATAC+CGG + chr4_1:72622892-72622911 Msa0570490:intron 35.0%
GATAAAACAATCTGAGTGCT+AGG - chr4_1:72623090-72623109 None:intergenic 35.0%
ATTGACCATGTCATGTAATC+AGG + chr4_1:72623192-72623211 Msa0570490:intron 35.0%
! GGAAGCTTTTATGCATTTGT+AGG + chr4_1:72623213-72623232 Msa0570490:intron 35.0%
!! AATGAAATGGACATTTTGGC+TGG + chr4_1:72623734-72623753 Msa0570490:three_prime_UTR 35.0%
GAATAGTAATTTGAGAGAGC+TGG - chr4_1:72623802-72623821 None:intergenic 35.0%
!! TACTCTTAAAAGGGGTATTC+AGG - chr4_1:72623852-72623871 None:intergenic 35.0%
!! TACCCCTTTTAAGAGTAAAG+AGG + chr4_1:72623855-72623874 Msa0570490:three_prime_UTR 35.0%
GGATCCTCTTTACTCTTAAA+AGG - chr4_1:72623862-72623881 None:intergenic 35.0%
TGCTGAGCATAACACCTTAT+TGG - chr4_1:72621632-72621651 None:intergenic 40.0%
AACGAAAAGAAGCCGTTAGT+TGG + chr4_1:72621661-72621680 Msa0570490:CDS 40.0%
AAGAAGCCGTTAGTTGGAAT+TGG + chr4_1:72621667-72621686 Msa0570490:CDS 40.0%
CCGTTAGTTGGAATTGGTAT+TGG + chr4_1:72621673-72621692 Msa0570490:CDS 40.0%
TATTGGGATTGTAGCAGCAT+GGG + chr4_1:72621690-72621709 Msa0570490:CDS 40.0%
ATTGTAGCAGCATGGGTAAT+GGG + chr4_1:72621697-72621716 Msa0570490:CDS 40.0%
!! AGCATGGGTAATGGGATTAA+CGG + chr4_1:72621705-72621724 Msa0570490:CDS 40.0%
!! TTTGGTGATGAAGCTCCTTT+AGG + chr4_1:72621838-72621857 Msa0570490:CDS 40.0%
CAAGGGTGAATGTGAATTTC+AGG + chr4_1:72622124-72622143 Msa0570490:intron 40.0%
GTAATTAGGGGATTGGATCA+GGG + chr4_1:72622146-72622165 Msa0570490:CDS 40.0%
! GGATTGGATCAGGGAATTTT+GGG + chr4_1:72622155-72622174 Msa0570490:CDS 40.0%
! GATTGGATCAGGGAATTTTG+GGG + chr4_1:72622156-72622175 Msa0570490:CDS 40.0%
! ATTGGATCAGGGAATTTTGG+GGG + chr4_1:72622157-72622176 Msa0570490:CDS 40.0%
ATAATACCTATCCGCATTGG+AGG - chr4_1:72622194-72622213 None:intergenic 40.0%
ATTCCTCCATTGTTAGCGTA+TGG + chr4_1:72622311-72622330 Msa0570490:CDS 40.0%
! ACCATGGATTTTGTTAGGCT+TGG + chr4_1:72622775-72622794 Msa0570490:intron 40.0%
TCCAAGCCTAACAAAATCCA+TGG - chr4_1:72622779-72622798 None:intergenic 40.0%
ATAGGTGACTGCAATATACC+GGG + chr4_1:72622893-72622912 Msa0570490:intron 40.0%
AAATTCACCTAATCCACGTG+CGG - chr4_1:72623018-72623037 None:intergenic 40.0%
AGAGCAAACAGAAAGTAAGC+TGG - chr4_1:72623112-72623131 None:intergenic 40.0%
AGCTTCCTGATTACATGACA+TGG - chr4_1:72623200-72623219 None:intergenic 40.0%
TTTGCTGACACACATGATCA+TGG + chr4_1:72623283-72623302 Msa0570490:intron 40.0%
TTAACCTTATCCTAGTGGCT+TGG + chr4_1:72623419-72623438 Msa0570490:intron 40.0%
AATCAAGACCAGAGAATGCA+TGG - chr4_1:72623646-72623665 None:intergenic 40.0%
! TGAGTGAGGATCAACTTGTT+AGG + chr4_1:72623757-72623776 Msa0570490:three_prime_UTR 40.0%
CTATTCCTGTTTAGTGCAGT+TGG + chr4_1:72623816-72623835 Msa0570490:three_prime_UTR 40.0%
CAATATTGCACTCTGAATGG+TGG + chr4_1:72623974-72623993 Msa0570490:three_prime_UTR 40.0%
CACAGAGGAAGAAGATCAAA+AGG - chr4_1:72624053-72624072 None:intergenic 40.0%
!! GTGTGCTGTTTGCAATGAAA+TGG + chr4_1:72624070-72624089 Msa0570490:three_prime_UTR 40.0%
CTCTCATTCTCACTCTGTTC+AGG + chr4_1:72621544-72621563 Msa0570490:CDS 45.0%
GTGTTATGCTCAGCACGTAA+CGG + chr4_1:72621637-72621656 Msa0570490:CDS 45.0%
GTATTGGGATTGTAGCAGCA+TGG + chr4_1:72621689-72621708 Msa0570490:CDS 45.0%
GATTGTAGCAGCATGGGTAA+TGG + chr4_1:72621696-72621715 Msa0570490:CDS 45.0%
TATACTGCTAGATTCGCCGA+TGG + chr4_1:72621972-72621991 Msa0570490:CDS 45.0%
ACACCAATACGCATAGTGAG+TGG - chr4_1:72622032-72622051 None:intergenic 45.0%
! CTCACTATGCGTATTGGTGT+TGG + chr4_1:72622032-72622051 Msa0570490:CDS 45.0%
!! TATGCGTATTGGTGTTGGCA+AGG + chr4_1:72622037-72622056 Msa0570490:CDS 45.0%
GGTAATTAGGGGATTGGATC+AGG + chr4_1:72622145-72622164 Msa0570490:intron 45.0%
! GGGATTGGATCAGGGAATTT+TGG + chr4_1:72622154-72622173 Msa0570490:CDS 45.0%
! TTGGATCAGGGAATTTTGGG+GGG + chr4_1:72622158-72622177 Msa0570490:CDS 45.0%
TCAGGACCATACGCTAACAA+TGG - chr4_1:72622320-72622339 None:intergenic 45.0%
TACAGAAGAGTTGCATTGCC+CGG - chr4_1:72622914-72622933 None:intergenic 45.0%
ATACACATATGAACCGCACG+TGG + chr4_1:72623002-72623021 Msa0570490:three_prime_UTR 45.0%
ATATGAACCGCACGTGGATT+AGG + chr4_1:72623008-72623027 Msa0570490:three_prime_UTR 45.0%
TAAGCCAAGCCACTAGGATA+AGG - chr4_1:72623426-72623445 None:intergenic 45.0%
TACGAATAAGCCAAGCCACT+AGG - chr4_1:72623432-72623451 None:intergenic 45.0%
ACCAGAGAATGCATGGAAAC+CGG - chr4_1:72623639-72623658 None:intergenic 45.0%
AATTTGAGAGAGCTGGAACC+AGG - chr4_1:72623795-72623814 None:intergenic 45.0%
CATGTCCAACTGCACTAAAC+AGG - chr4_1:72623824-72623843 None:intergenic 45.0%
GAGTAAAGAGGATCCAACTC+TGG + chr4_1:72623867-72623886 Msa0570490:three_prime_UTR 45.0%
ATATATCACCGCACCAGAGT+TGG - chr4_1:72623883-72623902 None:intergenic 45.0%
TCATTGCAAACAGCACACAG+AGG - chr4_1:72624068-72624087 None:intergenic 45.0%
!! GGTAATGGGATTAACGGCGT+TGG + chr4_1:72621711-72621730 Msa0570490:CDS 50.0%
AGGCCACTCACTATGCGTAT+TGG + chr4_1:72622026-72622045 Msa0570490:CDS 50.0%
GGACCATACGCTAACAATGG+AGG - chr4_1:72622317-72622336 None:intergenic 50.0%
!!! GACATTTTGGCTGGTGAGTG+AGG + chr4_1:72623743-72623762 Msa0570490:three_prime_UTR 50.0%
GTTAGGCAGATTCTCCTTCC+TGG + chr4_1:72623774-72623793 Msa0570490:three_prime_UTR 50.0%
AAGAGGATCCAACTCTGGTG+CGG + chr4_1:72623872-72623891 Msa0570490:three_prime_UTR 50.0%
! GGGATTAACGGCGTTGGATG+CGG + chr4_1:72621717-72621736 Msa0570490:CDS 55.0%
!! CAGGGAATTTTGGGGGGTGA+AGG + chr4_1:72622164-72622183 Msa0570490:CDS 55.0%
AAACCTGAGAAGCAGCCTGC+AGG - chr4_1:72622344-72622363 None:intergenic 55.0%
! GCCGGTTTCCATGCATTCTC+TGG + chr4_1:72623635-72623654 Msa0570490:intron 55.0%
TGAGAGAGCTGGAACCAGGA+AGG - chr4_1:72623791-72623810 None:intergenic 55.0%
! GTGAAGGCGTGCCTCCAATG+CGG + chr4_1:72622180-72622199 Msa0570490:CDS 60.0%
GCGTATGGTCCTGAACCTGC+AGG + chr4_1:72622326-72622345 Msa0570490:CDS 60.0%
GAGAAGCAGCCTGCAGGTTC+AGG - chr4_1:72622338-72622357 None:intergenic 60.0%
GAACCTGCAGGCTGCTTCTC+AGG + chr4_1:72622338-72622357 Msa0570490:CDS 60.0%
GGCGTGCCTCCAATGCGGAT+AGG + chr4_1:72622185-72622204 Msa0570490:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 72621447 72624156 72621447 ID=Msa0570490;Name=Msa0570490
chr4_1 mRNA 72621447 72624156 72621447 ID=Msa0570490-mRNA-1;Parent=Msa0570490;Name=Msa0570490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=91|1|1|1|0.8|0.66|6|476|213
chr4_1 exon 72621447 72621873 72621447 ID=Msa0570490-mRNA-1:exon:24845;Parent=Msa0570490-mRNA-1
chr4_1 exon 72621966 72622058 72621966 ID=Msa0570490-mRNA-1:exon:24846;Parent=Msa0570490-mRNA-1
chr4_1 exon 72622146 72622206 72622146 ID=Msa0570490-mRNA-1:exon:24847;Parent=Msa0570490-mRNA-1
chr4_1 exon 72622291 72622359 72622291 ID=Msa0570490-mRNA-1:exon:24848;Parent=Msa0570490-mRNA-1
chr4_1 exon 72622897 72623029 72622897 ID=Msa0570490-mRNA-1:exon:24849;Parent=Msa0570490-mRNA-1
chr4_1 exon 72623731 72624156 72623731 ID=Msa0570490-mRNA-1:exon:24850;Parent=Msa0570490-mRNA-1
chr4_1 five_prime_UTR 72621447 72621537 72621447 ID=Msa0570490-mRNA-1:five_prime_utr;Parent=Msa0570490-mRNA-1
chr4_1 CDS 72621538 72621873 72621538 ID=Msa0570490-mRNA-1:cds;Parent=Msa0570490-mRNA-1
chr4_1 CDS 72621966 72622058 72621966 ID=Msa0570490-mRNA-1:cds;Parent=Msa0570490-mRNA-1
chr4_1 CDS 72622146 72622206 72622146 ID=Msa0570490-mRNA-1:cds;Parent=Msa0570490-mRNA-1
chr4_1 CDS 72622291 72622359 72622291 ID=Msa0570490-mRNA-1:cds;Parent=Msa0570490-mRNA-1
chr4_1 CDS 72622897 72622979 72622897 ID=Msa0570490-mRNA-1:cds;Parent=Msa0570490-mRNA-1
chr4_1 three_prime_UTR 72622980 72623029 72622980 ID=Msa0570490-mRNA-1:three_prime_utr;Parent=Msa0570490-mRNA-1
chr4_1 three_prime_UTR 72623731 72624156 72623731 ID=Msa0570490-mRNA-1:three_prime_utr;Parent=Msa0570490-mRNA-1
Gene Sequence

>Msa0570490

ATGGCACTCTCATTCTCACTCTGTTCAGGCGCAACCGTTCATAACCGTTTTCCTTCTTGTATGAAATTGAATGGTAAAAGTTATAAAGTATCCAATAAGGTGTTATGCTCAGCACGTAACGGTAACGAAAAGAAGCCGTTAGTTGGAATTGGTATTGGGATTGTAGCAGCATGGGTAATGGGATTAACGGCGTTGGATGCGGATGCAACGAGAATTGAATACTATGCTACTGTGGGAGAGCCAATGTGTGAGCTTAATTATGTTAAATCTGGGCTTGGTTATTGTGATTATGTTGAGGGTTTTGGTGATGAAGCTCCTTTAGGAGAGCTTATTGATATTCACTATACTGCTAGATTCGCCGATGGAATAGTATTCGATAGTAGTTATAAACGTGCTAGGCCACTCACTATGCGTATTGGTGTTGGCAAGGTAATTAGGGGATTGGATCAGGGAATTTTGGGGGGTGAAGGCGTGCCTCCAATGCGGATAGGTGGGAAACGCAAACTCATGATTCCTCCATTGTTAGCGTATGGTCCTGAACCTGCAGGCTGCTTCTCAGGTGACTGCAATATACCGGGCAATGCAACTCTTCTGTATGATATTAAATTTGTTGGTCTTTATTCGGGCAATCGAAGTCAATGA

Protein sequence

>Msa0570490

MALSFSLCSGATVHNRFPSCMKLNGKSYKVSNKVLCSARNGNEKKPLVGIGIGIVAAWVMGLTALDADATRIEYYATVGEPMCELNYVKSGLGYCDYVEGFGDEAPLGELIDIHYTARFADGIVFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMRIGGKRKLMIPPLLAYGPEPAGCFSGDCNIPGNATLLYDIKFVGLYSGNRSQ*