Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571210 | XP_013447004.1 | 97.173 | 283 | 7 | 1 | 1 | 283 | 1 | 282 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571210 | sp|Q54KJ8|T2EB_DICDI | 27.574 | 272 | 173 | 9 | 10 | 275 | 6 | 259 | 2.69e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571210 | A0A072TV28 | 97.173 | 283 | 7 | 1 | 1 | 283 | 1 | 282 | 0.0 | 562 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0571210 | Msa0880380 | 0.836554 | 8.742616e-57 | -8.615850e-47 |
| Msa0571210 | Msa0946560 | 0.876367 | 1.477766e-68 | -8.615850e-47 |
| Msa0571210 | Msa1267790 | 0.872719 | 2.561573e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571210 | MtrunA17_Chr5g0397801 | 74.113 | 282 | 58 | 2 | 1 | 282 | 1 | 267 | 5.64e-149 | 417 |
| Msa0571210 | MtrunA17_Chr8g0386401 | 97.087 | 206 | 5 | 1 | 78 | 283 | 1 | 205 | 9.23e-147 | 409 |
| Msa0571210 | MtrunA17_Chr8g0386391 | 96.970 | 66 | 2 | 0 | 1 | 66 | 1 | 66 | 3.68e-39 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571210 | AT4G20330.1 | 66.312 | 282 | 92 | 2 | 1 | 282 | 1 | 279 | 9.74e-124 | 355 |
| Msa0571210 | AT4G21010.1 | 58.363 | 281 | 109 | 5 | 1 | 280 | 1 | 274 | 2.92e-96 | 285 |
Find 82 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTGCAGTGTGAATTTA+AGG | 0.122923 | 4_1:-73787866 | None:intergenic |
| TGCCCGTCGTATTCTACTTT+TGG | 0.214350 | 4_1:-73786294 | None:intergenic |
| TCCACCTTAATGTTTGCTTT+GGG | 0.248514 | 4_1:-73787311 | None:intergenic |
| ATCCACCTTAATGTTTGCTT+TGG | 0.267923 | 4_1:-73787312 | None:intergenic |
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 4_1:-73785245 | None:intergenic |
| CAGGAGTTGTTGTTTACTTT+AGG | 0.277978 | 4_1:-73787568 | None:intergenic |
| TGAAAGCTGCAGGGCAGATT+TGG | 0.288630 | 4_1:+73787240 | Msa0571210:CDS |
| ATGTTTGCTTTGGGGTCATT+CGG | 0.320738 | 4_1:-73787302 | None:intergenic |
| CTCTTTGCAGTGTTGGTAGC+AGG | 0.337273 | 4_1:-73787422 | None:intergenic |
| TCCCTTGCAGTGAGCTAATC+AGG | 0.340539 | 4_1:-73787587 | None:intergenic |
| CATGCTTCATTTATTTGCTC+TGG | 0.343949 | 4_1:-73786219 | None:intergenic |
| AACACACTCCTGATAGTTTC+AGG | 0.345135 | 4_1:-73787831 | None:intergenic |
| CAATGTGATGGAAGACTTGC+AGG | 0.356725 | 4_1:+73786523 | Msa0571210:CDS |
| TTCAGCAGATTAATAATATA+CGG | 0.357327 | 4_1:+73785333 | Msa0571210:CDS |
| ATTGGTCAGCTTGGTTCTCT+TGG | 0.364216 | 4_1:-73787519 | None:intergenic |
| CGCTTCATCTGAGCACCAAC+GGG | 0.368774 | 4_1:-73785362 | None:intergenic |
| CATTGGGGTAAGCATCCTTT+AGG | 0.372124 | 4_1:-73786505 | None:intergenic |
| CTTAGACTTGGACTTGGACT+TGG | 0.379977 | 4_1:-73787483 | None:intergenic |
| TGTTTGCTTTGGGGTCATTC+GGG | 0.391698 | 4_1:-73787301 | None:intergenic |
| TGCAAGTCTTCCATCACATT+GGG | 0.401716 | 4_1:-73786521 | None:intergenic |
| GCTGACCAATTCCCATCTTC+CGG | 0.404549 | 4_1:+73787532 | Msa0571210:CDS |
| TGACCCCAAAGCAAACATTA+AGG | 0.415737 | 4_1:+73787307 | Msa0571210:CDS |
| TTGTAGGCTTTGAAAGCTGC+AGG | 0.415846 | 4_1:+73787230 | Msa0571210:intron |
| ATGACCTAAAGCAGCTGTTT+CGG | 0.418120 | 4_1:+73787336 | Msa0571210:CDS |
| GAGAAGGATCTTCAAAAGAA+TGG | 0.418846 | 4_1:+73787392 | Msa0571210:CDS |
| ATAGGCAAAGTATGGTCTTA+AGG | 0.421161 | 4_1:+73786424 | Msa0571210:intron |
| AAGCTCCGGAAGATGGGAAT+TGG | 0.433158 | 4_1:-73787537 | None:intergenic |
| CTTGGACTTGGACTTGGACT+TGG | 0.442430 | 4_1:-73787477 | None:intergenic |
| TACTCCGAAACAGCTGCTTT+AGG | 0.444378 | 4_1:-73787340 | None:intergenic |
| GAAACTATCAGGAGTGTGTT+TGG | 0.445326 | 4_1:+73787834 | Msa0571210:three_prime_UTR |
| AGCATTGCGTCGAGCAAAGT+TGG | 0.452004 | 4_1:+73785212 | Msa0571210:CDS |
| AGTCCTCCTCTTTGCAGTGT+TGG | 0.455410 | 4_1:-73787429 | None:intergenic |
| GATTTCATTCTTCTTAGACT+TGG | 0.459783 | 4_1:-73787495 | None:intergenic |
| TTAGCTTAAGCTAGATCAGC+AGG | 0.464163 | 4_1:+73787635 | Msa0571210:three_prime_UTR |
| CCACCTTAATGTTTGCTTTG+GGG | 0.471247 | 4_1:-73787310 | None:intergenic |
| TCAGTGGATCTGCTGGTCAC+TGG | 0.473850 | 4_1:-73784882 | None:intergenic |
| GCTGTCCAACTTTGATTCAC+AGG | 0.488075 | 4_1:+73787265 | Msa0571210:CDS |
| AGGACTGCAGCACAAATTGA+TGG | 0.492183 | 4_1:+73787446 | Msa0571210:CDS |
| ACATCAAGGGTGTAAGCAAA+TGG | 0.493627 | 4_1:+73787723 | Msa0571210:three_prime_UTR |
| GATGCATTTGCAGCCACCAC+CGG | 0.494981 | 4_1:-73785254 | None:intergenic |
| GCTGCAAATGCATCAGCAAA+TGG | 0.504031 | 4_1:+73785263 | Msa0571210:CDS |
| AAGCATGCTATGTTGATATG+AGG | 0.505702 | 4_1:+73786235 | Msa0571210:CDS |
| CGGCTACTCAGTGGATCTGC+TGG | 0.507587 | 4_1:-73784889 | None:intergenic |
| TATTCAGGCGAAGCTGTTCG+TGG | 0.510564 | 4_1:+73785100 | Msa0571210:intron |
| GTCGTCCTGTGAATCAAAGT+TGG | 0.513690 | 4_1:-73787270 | None:intergenic |
| ATTCTTCTTAGACTTGGACT+TGG | 0.515148 | 4_1:-73787489 | None:intergenic |
| CTGCAAGTCTTCCATCACAT+TGG | 0.523283 | 4_1:-73786522 | None:intergenic |
| CTCTGCAAGAGCAACTAGAT+AGG | 0.523289 | 4_1:+73785150 | Msa0571210:CDS |
| AAGTAGAATACGACGGGCAA+CGG | 0.531226 | 4_1:+73786298 | Msa0571210:CDS |
| CGGGCAACGGTTCTCTTACA+AGG | 0.541030 | 4_1:+73786311 | Msa0571210:CDS |
| AAGATGGGAATTGGTCAGCT+TGG | 0.557060 | 4_1:-73787528 | None:intergenic |
| ACCCAAAAGTAGAATACGAC+GGG | 0.561755 | 4_1:+73786292 | Msa0571210:CDS |
| GGATGCTTACCCCAATGTGA+TGG | 0.574607 | 4_1:+73786511 | Msa0571210:CDS |
| ATTCAGGCGAAGCTGTTCGT+GGG | 0.581448 | 4_1:+73785101 | Msa0571210:intron |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 4_1:+73785241 | Msa0571210:CDS |
| TGTTATTGATCTATTGCTTG+AGG | 0.583522 | 4_1:+73785385 | Msa0571210:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 4_1:+73785235 | Msa0571210:CDS |
| ACGCTTCATCTGAGCACCAA+CGG | 0.595575 | 4_1:-73785363 | None:intergenic |
| TCTGCTGGTCACTGGCTGTG+TGG | 0.600374 | 4_1:-73784874 | None:intergenic |
| AGCTTCTTCAACTTATACGT+AGG | 0.600973 | 4_1:+73786456 | Msa0571210:CDS |
| TCCTGATTAGCTCACTGCAA+GGG | 0.613343 | 4_1:+73787586 | Msa0571210:three_prime_UTR |
| GGTGTAAGCAAATGGTGGAC+TGG | 0.615267 | 4_1:+73787731 | Msa0571210:three_prime_UTR |
| TGATATGATTGATATAGAGA+AGG | 0.617718 | 4_1:+73787376 | Msa0571210:CDS |
| CTCCTGATTAGCTCACTGCA+AGG | 0.620794 | 4_1:+73787585 | Msa0571210:three_prime_UTR |
| CCCCAAAGCAAACATTAAGG+TGG | 0.623815 | 4_1:+73787310 | Msa0571210:CDS |
| AATTCTCAAGTGACACTGAG+AGG | 0.626331 | 4_1:+73785309 | Msa0571210:CDS |
| AGCATGCTATGTTGATATGA+GGG | 0.636991 | 4_1:+73786236 | Msa0571210:CDS |
| TGTAGGCTTTGAAAGCTGCA+GGG | 0.643501 | 4_1:+73787231 | Msa0571210:intron |
| CTACCAACACTGCAAAGAGG+AGG | 0.656479 | 4_1:+73787426 | Msa0571210:CDS |
| TCAAGGGTGTAAGCAAATGG+TGG | 0.658420 | 4_1:+73787726 | Msa0571210:three_prime_UTR |
| CTGCTACCAACACTGCAAAG+AGG | 0.665956 | 4_1:+73787423 | Msa0571210:CDS |
| GCTTCATCTGAGCACCAACG+GGG | 0.666699 | 4_1:-73785361 | None:intergenic |
| GGCACCTTTCGGCTACTCAG+TGG | 0.667607 | 4_1:-73784898 | None:intergenic |
| ACTTATACGTAGGTATCCAG+AGG | 0.677982 | 4_1:+73786466 | Msa0571210:CDS |
| AGATCCACTGAGTAGCCGAA+AGG | 0.684598 | 4_1:+73784894 | Msa0571210:five_prime_UTR |
| CTTATACGTAGGTATCCAGA+GGG | 0.688413 | 4_1:+73786467 | Msa0571210:CDS |
| AACCCAAAAGTAGAATACGA+CGG | 0.689064 | 4_1:+73786291 | Msa0571210:CDS |
| TGGCTGTATGCAATCAATGA+CGG | 0.689987 | 4_1:-73784854 | None:intergenic |
| GCAAGTCTTCCATCACATTG+GGG | 0.693489 | 4_1:-73786520 | None:intergenic |
| CTTCATCTGAGCACCAACGG+GGG | 0.696908 | 4_1:-73785360 | None:intergenic |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 4_1:+73785238 | Msa0571210:CDS |
| TCTATATCAATCATATCACG+AGG | 0.742182 | 4_1:-73787371 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACCTTAATTTATAATAA+TGG | - | chr4_1:73786848-73786867 | None:intergenic | 10.0% |
| !! | GAAAAATAAAATATTAAACA+AGG | - | chr4_1:73787809-73787828 | None:intergenic | 10.0% |
| !! | TAAAAAATGAATTATGAATG+TGG | - | chr4_1:73784989-73785008 | None:intergenic | 15.0% |
| !!! | TTGTTTGTTTTTTCATTTAT+TGG | + | chr4_1:73785441-73785460 | Msa0571210:intron | 15.0% |
| !! | ATTGAAACTAATAATATGTT+TGG | + | chr4_1:73785626-73785645 | Msa0571210:intron | 15.0% |
| !!! | TTTTATGGGTAATATAATAT+GGG | + | chr4_1:73786741-73786760 | Msa0571210:intron | 15.0% |
| !! | TTAATTTATAATAATGGCAA+CGG | - | chr4_1:73786842-73786861 | None:intergenic | 15.0% |
| !! | AATAAACAAAACAAATGTAT+AGG | - | chr4_1:73786980-73786999 | None:intergenic | 15.0% |
| !! | AAAAACAAATATCAAAAGTA+GGG | - | chr4_1:73787694-73787713 | None:intergenic | 15.0% |
| !! | TAAAAACAAATATCAAAAGT+AGG | - | chr4_1:73787695-73787714 | None:intergenic | 15.0% |
| !!! | TTTTTAGTTTTTATACATCA+AGG | + | chr4_1:73787709-73787728 | Msa0571210:three_prime_UTR | 15.0% |
| !!! | TTTTAGTTTTTATACATCAA+GGG | + | chr4_1:73787710-73787729 | Msa0571210:three_prime_UTR | 15.0% |
| !! | GATGTGAAAATAAAAAGTAA+CGG | - | chr4_1:73784950-73784969 | None:intergenic | 20.0% |
| !! | TTCAGCAGATTAATAATATA+CGG | + | chr4_1:73785333-73785352 | Msa0571210:CDS | 20.0% |
| !!! | TATTAGTTTCAATTTGCAAT+TGG | - | chr4_1:73785619-73785638 | None:intergenic | 20.0% |
| !! | ATTAAGTTCTCAATATGTTA+GGG | - | chr4_1:73785767-73785786 | None:intergenic | 20.0% |
| !! | AATTAAGTTCTCAATATGTT+AGG | - | chr4_1:73785768-73785787 | None:intergenic | 20.0% |
| !! | ACTTAAATAGATGACATAAA+GGG | + | chr4_1:73785846-73785865 | Msa0571210:intron | 20.0% |
| !!! | GTTATTTGTTTTTTGTCTAT+AGG | + | chr4_1:73786406-73786425 | Msa0571210:intron | 20.0% |
| !!! | AAGAAGATCAAATGTTTTAT+GGG | + | chr4_1:73786727-73786746 | Msa0571210:intron | 20.0% |
| !!! | GTTTTATGGGTAATATAATA+TGG | + | chr4_1:73786740-73786759 | Msa0571210:intron | 20.0% |
| !! | GTTGCCATTATTATAAATTA+AGG | + | chr4_1:73786841-73786860 | Msa0571210:intron | 20.0% |
| !! | ATAAATTAAGGTTAATACTG+AGG | + | chr4_1:73786853-73786872 | Msa0571210:intron | 20.0% |
| !! | TTAATGTTTGTCTTGAAATA+TGG | + | chr4_1:73787077-73787096 | Msa0571210:intron | 20.0% |
| !!! | TCATAATGATATCTTTTTGT+AGG | + | chr4_1:73787214-73787233 | Msa0571210:intron | 20.0% |
| ! | AATGAATTATGAATGTGGTT+AGG | - | chr4_1:73784984-73785003 | None:intergenic | 25.0% |
| !!! | TAACAATCCTCTAAAATCTT+AGG | + | chr4_1:73785007-73785026 | Msa0571210:intron | 25.0% |
| !!! | AACAATCCTCTAAAATCTTA+GGG | + | chr4_1:73785008-73785027 | Msa0571210:intron | 25.0% |
| !!! | TTCAAGTTTTTGGTGAAAAA+TGG | + | chr4_1:73785127-73785146 | Msa0571210:exon | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | + | chr4_1:73785281-73785300 | Msa0571210:CDS | 25.0% |
| ! | TTTCATTTATTGGAAGTTTC+TGG | + | chr4_1:73785451-73785470 | Msa0571210:intron | 25.0% |
| ! | AAACTAATAATATGTTTGGC+TGG | + | chr4_1:73785630-73785649 | Msa0571210:intron | 25.0% |
| ! | GACTTAAATAGATGACATAA+AGG | + | chr4_1:73785845-73785864 | Msa0571210:intron | 25.0% |
| ! | TACATATCACTTATGTAGAA+TGG | + | chr4_1:73785907-73785926 | Msa0571210:intron | 25.0% |
| ! | ATACTCTTAATCAATGTTCA+CGG | - | chr4_1:73785960-73785979 | None:intergenic | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | - | chr4_1:73786384-73786403 | None:intergenic | 25.0% |
| ! | ACATTTGATCTTCTTCAAAA+GGG | - | chr4_1:73786722-73786741 | None:intergenic | 25.0% |
| ! | AACATTTGATCTTCTTCAAA+AGG | - | chr4_1:73786723-73786742 | None:intergenic | 25.0% |
| !! | GAAGAAGATCAAATGTTTTA+TGG | + | chr4_1:73786726-73786745 | Msa0571210:intron | 25.0% |
| ! | ATAATAACATTGCACATTAG+TGG | + | chr4_1:73786768-73786787 | Msa0571210:intron | 25.0% |
| ! | TAATAACATTGCACATTAGT+GGG | + | chr4_1:73786769-73786788 | Msa0571210:intron | 25.0% |
| ! | ATGGAAATAGAGATTATAGA+TGG | + | chr4_1:73787096-73787115 | Msa0571210:intron | 25.0% |
| ! | GTCAAAATCTTGTATATAGT+TGG | + | chr4_1:73787172-73787191 | Msa0571210:intron | 25.0% |
| ! | TGATATGATTGATATAGAGA+AGG | + | chr4_1:73787376-73787395 | Msa0571210:CDS | 25.0% |
| ! | ACAAAACCCTAAGATTTTAG+AGG | - | chr4_1:73785017-73785036 | None:intergenic | 30.0% |
| TAGTGAACAATCCTTTATTC+AGG | + | chr4_1:73785085-73785104 | Msa0571210:intron | 30.0% | |
| TGTTATTGATCTATTGCTTG+AGG | + | chr4_1:73785385-73785404 | Msa0571210:CDS | 30.0% | |
| TAACCTCAAACTTAACAGAT+GGG | - | chr4_1:73785571-73785590 | None:intergenic | 30.0% | |
| TTAACCTCAAACTTAACAGA+TGG | - | chr4_1:73785572-73785591 | None:intergenic | 30.0% | |
| GTTTGCAAATTAAGCATACA+AGG | + | chr4_1:73785813-73785832 | Msa0571210:intron | 30.0% | |
| ! | AGTCATCTTCCAAGATATTT+TGG | + | chr4_1:73786027-73786046 | Msa0571210:intron | 30.0% |
| CATCAAACTCCAAAATATCT+TGG | - | chr4_1:73786039-73786058 | None:intergenic | 30.0% | |
| !!! | CAAGATATTTTGGAGTTTGA+TGG | + | chr4_1:73786037-73786056 | Msa0571210:intron | 30.0% |
| ACCAATGAAATTCCACAATT+AGG | + | chr4_1:73786129-73786148 | Msa0571210:intron | 30.0% | |
| TCCTAATTGTGGAATTTCAT+TGG | - | chr4_1:73786133-73786152 | None:intergenic | 30.0% | |
| ! | TCGTCAAAACCATATTGATT+TGG | + | chr4_1:73786159-73786178 | Msa0571210:intron | 30.0% |
| !!! | ACCATATTGATTTGGTGTTT+TGG | + | chr4_1:73786167-73786186 | Msa0571210:intron | 30.0% |
| ACCAAAACACCAAATCAATA+TGG | - | chr4_1:73786171-73786190 | None:intergenic | 30.0% | |
| ! | CTCTTACAAGGTAACTTTTA+CGG | + | chr4_1:73786323-73786342 | Msa0571210:intron | 30.0% |
| ! | TCTTACAAGGTAACTTTTAC+GGG | + | chr4_1:73786324-73786343 | Msa0571210:intron | 30.0% |
| ! | TTTTGTCTATAGGCAAAGTA+TGG | + | chr4_1:73786416-73786435 | Msa0571210:intron | 30.0% |
| AATTCTCATTTCTCACAGAT+TGG | + | chr4_1:73786645-73786664 | Msa0571210:intron | 30.0% | |
| ! | AGGAGCAAGATTTTGTAATA+TGG | - | chr4_1:73786902-73786921 | None:intergenic | 30.0% |
| TTACAAAATCTTGCTCCTTA+AGG | + | chr4_1:73786904-73786923 | Msa0571210:intron | 30.0% | |
| AGATTATAGATGGAACTATC+AGG | + | chr4_1:73787106-73787125 | Msa0571210:intron | 30.0% | |
| AAAAACATCACCTATCACTA+AGG | - | chr4_1:73787139-73787158 | None:intergenic | 30.0% | |
| !!! | TAGTTGGCTTTTCAATGAAT+AGG | + | chr4_1:73787188-73787207 | Msa0571210:intron | 30.0% |
| TCTATATCAATCATATCACG+AGG | - | chr4_1:73787374-73787393 | None:intergenic | 30.0% | |
| GATTTCATTCTTCTTAGACT+TGG | - | chr4_1:73787498-73787517 | None:intergenic | 30.0% | |
| TGAAAACATGGCGTTGTTAA+CGG | - | chr4_1:73784922-73784941 | None:intergenic | 35.0% | |
| ! | GTAACGGAAGATTGAAAACA+TGG | - | chr4_1:73784934-73784953 | None:intergenic | 35.0% |
| !!! | TCGTGGGATTTTCAAGTTTT+TGG | + | chr4_1:73785117-73785136 | Msa0571210:five_prime_UTR | 35.0% |
| TAGCAGAAAACCTAATACTC+CGG | + | chr4_1:73785235-73785254 | Msa0571210:CDS | 35.0% | |
| ! | CTATTGCTTGAGGTAGTTTT+TGG | + | chr4_1:73785395-73785414 | Msa0571210:intron | 35.0% |
| ! | CATTTATTGGAAGTTTCTGG+TGG | + | chr4_1:73785454-73785473 | Msa0571210:intron | 35.0% |
| AGTTCTCAATATGTTAGGGT+GGG | - | chr4_1:73785763-73785782 | None:intergenic | 35.0% | |
| AAGTTCTCAATATGTTAGGG+TGG | - | chr4_1:73785764-73785783 | None:intergenic | 35.0% | |
| CAAATTAAGCATACAAGGTC+AGG | + | chr4_1:73785818-73785837 | Msa0571210:intron | 35.0% | |
| ATCACTTATGTAGAATGGTG+TGG | + | chr4_1:73785912-73785931 | Msa0571210:intron | 35.0% | |
| ATGCATCTTGTAGATCGTTA+TGG | - | chr4_1:73785990-73786009 | None:intergenic | 35.0% | |
| TAACGATCTACAAGATGCAT+AGG | + | chr4_1:73785990-73786009 | Msa0571210:intron | 35.0% | |
| ! | GAGTTTGATGGATGTTATGT+TGG | + | chr4_1:73786049-73786068 | Msa0571210:intron | 35.0% |
| GTAAGCTATCTTAAGTAGCA+TGG | - | chr4_1:73786111-73786130 | None:intergenic | 35.0% | |
| GACGAATCAATTCCTAATTG+TGG | - | chr4_1:73786144-73786163 | None:intergenic | 35.0% | |
| CATGCTTCATTTATTTGCTC+TGG | - | chr4_1:73786222-73786241 | None:intergenic | 35.0% | |
| AAGCATGCTATGTTGATATG+AGG | + | chr4_1:73786235-73786254 | Msa0571210:CDS | 35.0% | |
| AGCATGCTATGTTGATATGA+GGG | + | chr4_1:73786236-73786255 | Msa0571210:CDS | 35.0% | |
| !! | AAGATGTTTTTGAGAGTCTG+AGG | + | chr4_1:73786265-73786284 | Msa0571210:CDS | 35.0% |
| AACCCAAAAGTAGAATACGA+CGG | + | chr4_1:73786291-73786310 | Msa0571210:CDS | 35.0% | |
| ! | ATAGGCAAAGTATGGTCTTA+AGG | + | chr4_1:73786424-73786443 | Msa0571210:intron | 35.0% |
| AGCTTCTTCAACTTATACGT+AGG | + | chr4_1:73786456-73786475 | Msa0571210:CDS | 35.0% | |
| AGGTAGAATGACTTCTGTTA+GGG | + | chr4_1:73786543-73786562 | Msa0571210:intron | 35.0% | |
| ACATTTCTTACAGCACCTTA+AGG | - | chr4_1:73786922-73786941 | None:intergenic | 35.0% | |
| !! | TTAAGGTGCTGTAAGAAATG+TGG | + | chr4_1:73786921-73786940 | Msa0571210:intron | 35.0% |
| GTATAGGAAGTGAATGAACA+AGG | - | chr4_1:73786964-73786983 | None:intergenic | 35.0% | |
| CATGTAAACGTCAATGAGAA+TGG | - | chr4_1:73787026-73787045 | None:intergenic | 35.0% | |
| TACATGATACCGAGACATTA+AGG | + | chr4_1:73787040-73787059 | Msa0571210:intron | 35.0% | |
| ACATGATACCGAGACATTAA+GGG | + | chr4_1:73787041-73787060 | Msa0571210:intron | 35.0% | |
| TCCACCTTAATGTTTGCTTT+GGG | - | chr4_1:73787314-73787333 | None:intergenic | 35.0% | |
| ATCCACCTTAATGTTTGCTT+TGG | - | chr4_1:73787315-73787334 | None:intergenic | 35.0% | |
| GAGAAGGATCTTCAAAAGAA+TGG | + | chr4_1:73787392-73787411 | Msa0571210:CDS | 35.0% | |
| ATTCTTCTTAGACTTGGACT+TGG | - | chr4_1:73787492-73787511 | None:intergenic | 35.0% | |
| !! | TTTAGGTTCTGAAAAAGCTC+CGG | - | chr4_1:73787554-73787573 | None:intergenic | 35.0% |
| !! | CAGGAGTTGTTGTTTACTTT+AGG | - | chr4_1:73787571-73787590 | None:intergenic | 35.0% |
| ! | CAGCAGGTTGAAAAATATTC+AGG | + | chr4_1:73787651-73787670 | Msa0571210:three_prime_UTR | 35.0% |
| ! | CAGGTTGAAAAATATTCAGG+AGG | + | chr4_1:73787654-73787673 | Msa0571210:three_prime_UTR | 35.0% |
| TGTCTTGCAGTGTGAATTTA+AGG | - | chr4_1:73787869-73787888 | None:intergenic | 35.0% | |
| TGGCTGTATGCAATCAATGA+CGG | - | chr4_1:73784857-73784876 | None:intergenic | 40.0% | |
| AATTCTCAAGTGACACTGAG+AGG | + | chr4_1:73785309-73785328 | Msa0571210:CDS | 40.0% | |
| ! | TTAACAGATGGGCTTCTCAA+AGG | - | chr4_1:73785560-73785579 | None:intergenic | 40.0% |
| AAGCCCATCTGTTAAGTTTG+AGG | + | chr4_1:73785565-73785584 | Msa0571210:intron | 40.0% | |
| TGAGTTTGGCTAAATCACTG+TGG | + | chr4_1:73785657-73785676 | Msa0571210:intron | 40.0% | |
| GAGTTTGGCTAAATCACTGT+GGG | + | chr4_1:73785658-73785677 | Msa0571210:intron | 40.0% | |
| AGTTTGGCTAAATCACTGTG+GGG | + | chr4_1:73785659-73785678 | Msa0571210:intron | 40.0% | |
| GTGATATGTAAACGAACCTG+TGG | - | chr4_1:73785897-73785916 | None:intergenic | 40.0% | |
| ACCCAAAAGTAGAATACGAC+GGG | + | chr4_1:73786292-73786311 | Msa0571210:CDS | 40.0% | |
| ACTTATACGTAGGTATCCAG+AGG | + | chr4_1:73786466-73786485 | Msa0571210:CDS | 40.0% | |
| CTTATACGTAGGTATCCAGA+GGG | + | chr4_1:73786467-73786486 | Msa0571210:CDS | 40.0% | |
| CCTTTAGGTCAAAAACAGCA+AGG | - | chr4_1:73786493-73786512 | None:intergenic | 40.0% | |
| !!! | CCTTGCTGTTTTTGACCTAA+AGG | + | chr4_1:73786490-73786509 | Msa0571210:CDS | 40.0% |
| TGCAAGTCTTCCATCACATT+GGG | - | chr4_1:73786524-73786543 | None:intergenic | 40.0% | |
| CAGGTAGAATGACTTCTGTT+AGG | + | chr4_1:73786542-73786561 | Msa0571210:intron | 40.0% | |
| GAAAAAACGTCGTCAGGAAA+TGG | - | chr4_1:73786590-73786609 | None:intergenic | 40.0% | |
| AATGAACAAGGTAGCAGGAA+AGG | - | chr4_1:73786952-73786971 | None:intergenic | 40.0% | |
| AAGTGAATGAACAAGGTAGC+AGG | - | chr4_1:73786957-73786976 | None:intergenic | 40.0% | |
| TGAGAATGGAAGCAAAGAGA+AGG | - | chr4_1:73787012-73787031 | None:intergenic | 40.0% | |
| TCACTCTTCCCTTAATGTCT+CGG | - | chr4_1:73787052-73787071 | None:intergenic | 40.0% | |
| AGGTCATATGCCTTAGTGAT+AGG | + | chr4_1:73787126-73787145 | Msa0571210:intron | 40.0% | |
| !! | ATGTTTGCTTTGGGGTCATT+CGG | - | chr4_1:73787305-73787324 | None:intergenic | 40.0% |
| TGACCCCAAAGCAAACATTA+AGG | + | chr4_1:73787307-73787326 | Msa0571210:CDS | 40.0% | |
| CCACCTTAATGTTTGCTTTG+GGG | - | chr4_1:73787313-73787332 | None:intergenic | 40.0% | |
| ATGACCTAAAGCAGCTGTTT+CGG | + | chr4_1:73787336-73787355 | Msa0571210:CDS | 40.0% | |
| TTAGCTTAAGCTAGATCAGC+AGG | + | chr4_1:73787635-73787654 | Msa0571210:three_prime_UTR | 40.0% | |
| ! | ACATCAAGGGTGTAAGCAAA+TGG | + | chr4_1:73787723-73787742 | Msa0571210:three_prime_UTR | 40.0% |
| !! | TTTTTCGGCCTGAAACTATC+AGG | + | chr4_1:73787823-73787842 | Msa0571210:three_prime_UTR | 40.0% |
| AACACACTCCTGATAGTTTC+AGG | - | chr4_1:73787834-73787853 | None:intergenic | 40.0% | |
| ! | GAAACTATCAGGAGTGTGTT+TGG | + | chr4_1:73787834-73787853 | Msa0571210:three_prime_UTR | 40.0% |
| CATCAACGAGCTTTCGAAAG+AGG | - | chr4_1:73785054-73785073 | None:intergenic | 45.0% | |
| GAACAGCTTCGCCTGAATAA+AGG | - | chr4_1:73785099-73785118 | None:intergenic | 45.0% | |
| CTCTGCAAGAGCAACTAGAT+AGG | + | chr4_1:73785150-73785169 | Msa0571210:CDS | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | + | chr4_1:73785238-73785257 | Msa0571210:CDS | 45.0% | |
| AAAACCTAATACTCCGGTGG+TGG | + | chr4_1:73785241-73785260 | Msa0571210:CDS | 45.0% | |
| GCTGCAAATGCATCAGCAAA+TGG | + | chr4_1:73785263-73785282 | Msa0571210:CDS | 45.0% | |
| ! | TTTTCCCTCGTCTCATGCAT+CGG | - | chr4_1:73785496-73785515 | None:intergenic | 45.0% |
| TCTCAATATGTTAGGGTGGG+CGG | - | chr4_1:73785760-73785779 | None:intergenic | 45.0% | |
| TATGTAAACGAACCTGTGGC+AGG | - | chr4_1:73785893-73785912 | None:intergenic | 45.0% | |
| !! | GCCCGTCGTATTCTACTTTT+GGG | - | chr4_1:73786296-73786315 | None:intergenic | 45.0% |
| ! | TGCCCGTCGTATTCTACTTT+TGG | - | chr4_1:73786297-73786316 | None:intergenic | 45.0% |
| AAGTAGAATACGACGGGCAA+CGG | + | chr4_1:73786298-73786317 | Msa0571210:CDS | 45.0% | |
| CATTGGGGTAAGCATCCTTT+AGG | - | chr4_1:73786508-73786527 | None:intergenic | 45.0% | |
| GCAAGTCTTCCATCACATTG+GGG | - | chr4_1:73786523-73786542 | None:intergenic | 45.0% | |
| CTGCAAGTCTTCCATCACAT+TGG | - | chr4_1:73786525-73786544 | None:intergenic | 45.0% | |
| ! | CAATGTGATGGAAGACTTGC+AGG | + | chr4_1:73786523-73786542 | Msa0571210:CDS | 45.0% |
| GCTACTGAAAAAACGTCGTC+AGG | - | chr4_1:73786596-73786615 | None:intergenic | 45.0% | |
| !!! | CGACGTTTTTTCAGTAGCAG+TGG | + | chr4_1:73786598-73786617 | Msa0571210:intron | 45.0% |
| !!! | TTCCACTTTTTCCCAACCCT+TGG | + | chr4_1:73786808-73786827 | Msa0571210:intron | 45.0% |
| !! | CGGTTTTAATGCCAAGGGTT+GGG | - | chr4_1:73786822-73786841 | None:intergenic | 45.0% |
| !! | ACGGTTTTAATGCCAAGGGT+TGG | - | chr4_1:73786823-73786842 | None:intergenic | 45.0% |
| !! | GGCAACGGTTTTAATGCCAA+GGG | - | chr4_1:73786827-73786846 | None:intergenic | 45.0% |
| !! | TGGCAACGGTTTTAATGCCA+AGG | - | chr4_1:73786828-73786847 | None:intergenic | 45.0% |
| !! | TTGTAGGCTTTGAAAGCTGC+AGG | + | chr4_1:73787230-73787249 | Msa0571210:intron | 45.0% |
| !! | TGTAGGCTTTGAAAGCTGCA+GGG | + | chr4_1:73787231-73787250 | Msa0571210:intron | 45.0% |
| GCTGTCCAACTTTGATTCAC+AGG | + | chr4_1:73787265-73787284 | Msa0571210:CDS | 45.0% | |
| GTCGTCCTGTGAATCAAAGT+TGG | - | chr4_1:73787273-73787292 | None:intergenic | 45.0% | |
| !! | TGTTTGCTTTGGGGTCATTC+GGG | - | chr4_1:73787304-73787323 | None:intergenic | 45.0% |
| CCCCAAAGCAAACATTAAGG+TGG | + | chr4_1:73787310-73787329 | Msa0571210:CDS | 45.0% | |
| ! | TACTCCGAAACAGCTGCTTT+AGG | - | chr4_1:73787343-73787362 | None:intergenic | 45.0% |
| AGGACTGCAGCACAAATTGA+TGG | + | chr4_1:73787446-73787465 | Msa0571210:CDS | 45.0% | |
| CTTAGACTTGGACTTGGACT+TGG | - | chr4_1:73787486-73787505 | None:intergenic | 45.0% | |
| ! | ATTGGTCAGCTTGGTTCTCT+TGG | - | chr4_1:73787522-73787541 | None:intergenic | 45.0% |
| AAGATGGGAATTGGTCAGCT+TGG | - | chr4_1:73787531-73787550 | None:intergenic | 45.0% | |
| CTGAAAAAGCTCCGGAAGAT+GGG | - | chr4_1:73787546-73787565 | None:intergenic | 45.0% | |
| TCTGAAAAAGCTCCGGAAGA+TGG | - | chr4_1:73787547-73787566 | None:intergenic | 45.0% | |
| ! | TCCTGATTAGCTCACTGCAA+GGG | + | chr4_1:73787586-73787605 | Msa0571210:three_prime_UTR | 45.0% |
| ! | TCAAGGGTGTAAGCAAATGG+TGG | + | chr4_1:73787726-73787745 | Msa0571210:three_prime_UTR | 45.0% |
| !!! | TTGTTTAATATTTTATTTTT+CGG | + | chr4_1:73787808-73787827 | Msa0571210:three_prime_UTR | 5.0% |
| AGATCCACTGAGTAGCCGAA+AGG | + | chr4_1:73784894-73784913 | Msa0571210:five_prime_UTR | 50.0% | |
| GCGTTGTTAACGGCACCTTT+CGG | - | chr4_1:73784912-73784931 | None:intergenic | 50.0% | |
| TATTCAGGCGAAGCTGTTCG+TGG | + | chr4_1:73785100-73785119 | Msa0571210:intron | 50.0% | |
| ATTCAGGCGAAGCTGTTCGT+GGG | + | chr4_1:73785101-73785120 | Msa0571210:intron | 50.0% | |
| AGCATTGCGTCGAGCAAAGT+TGG | + | chr4_1:73785212-73785231 | Msa0571210:CDS | 50.0% | |
| AATATACGGAAAGCCCCCGT+TGG | + | chr4_1:73785347-73785366 | Msa0571210:CDS | 50.0% | |
| ACGCTTCATCTGAGCACCAA+CGG | - | chr4_1:73785366-73785385 | None:intergenic | 50.0% | |
| TGATTCCGATGCATGAGACG+AGG | + | chr4_1:73785488-73785507 | Msa0571210:intron | 50.0% | |
| GATTCCGATGCATGAGACGA+GGG | + | chr4_1:73785489-73785508 | Msa0571210:intron | 50.0% | |
| GTTTGGCTGGACACTGAGTT+TGG | + | chr4_1:73785643-73785662 | Msa0571210:intron | 50.0% | |
| TCAAATCCCAATCCTGCCAC+AGG | + | chr4_1:73785878-73785897 | Msa0571210:intron | 50.0% | |
| AACGAACCTGTGGCAGGATT+GGG | - | chr4_1:73785887-73785906 | None:intergenic | 50.0% | |
| AAACGAACCTGTGGCAGGAT+TGG | - | chr4_1:73785888-73785907 | None:intergenic | 50.0% | |
| TCAAAAACAGCAAGGCCCTC+TGG | - | chr4_1:73786485-73786504 | None:intergenic | 50.0% | |
| GGATGCTTACCCCAATGTGA+TGG | + | chr4_1:73786511-73786530 | Msa0571210:CDS | 50.0% | |
| TGCCAAGGGTTGGGAAAAAG+TGG | - | chr4_1:73786813-73786832 | None:intergenic | 50.0% | |
| TGAAAGCTGCAGGGCAGATT+TGG | + | chr4_1:73787240-73787259 | Msa0571210:CDS | 50.0% | |
| !! | CTCTTTGCAGTGTTGGTAGC+AGG | - | chr4_1:73787425-73787444 | None:intergenic | 50.0% |
| CTGCTACCAACACTGCAAAG+AGG | + | chr4_1:73787423-73787442 | Msa0571210:CDS | 50.0% | |
| CTACCAACACTGCAAAGAGG+AGG | + | chr4_1:73787426-73787445 | Msa0571210:CDS | 50.0% | |
| AGTCCTCCTCTTTGCAGTGT+TGG | - | chr4_1:73787432-73787451 | None:intergenic | 50.0% | |
| CTTGGACTTGGACTTGGACT+TGG | - | chr4_1:73787480-73787499 | None:intergenic | 50.0% | |
| GCTGACCAATTCCCATCTTC+CGG | + | chr4_1:73787532-73787551 | Msa0571210:CDS | 50.0% | |
| AAGCTCCGGAAGATGGGAAT+TGG | - | chr4_1:73787540-73787559 | None:intergenic | 50.0% | |
| ! | CTCCTGATTAGCTCACTGCA+AGG | + | chr4_1:73787585-73787604 | Msa0571210:three_prime_UTR | 50.0% |
| TCCCTTGCAGTGAGCTAATC+AGG | - | chr4_1:73787590-73787609 | None:intergenic | 50.0% | |
| !! | GGTGTAAGCAAATGGTGGAC+TGG | + | chr4_1:73787731-73787750 | Msa0571210:three_prime_UTR | 50.0% |
| TCAGTGGATCTGCTGGTCAC+TGG | - | chr4_1:73784885-73784904 | None:intergenic | 55.0% | |
| GATGCATTTGCAGCCACCAC+CGG | - | chr4_1:73785257-73785276 | None:intergenic | 55.0% | |
| CTTCATCTGAGCACCAACGG+GGG | - | chr4_1:73785363-73785382 | None:intergenic | 55.0% | |
| GCTTCATCTGAGCACCAACG+GGG | - | chr4_1:73785364-73785383 | None:intergenic | 55.0% | |
| CGCTTCATCTGAGCACCAAC+GGG | - | chr4_1:73785365-73785384 | None:intergenic | 55.0% | |
| CGGGCAACGGTTCTCTTACA+AGG | + | chr4_1:73786311-73786330 | Msa0571210:CDS | 55.0% | |
| ! | TCTGCTGGTCACTGGCTGTG+TGG | - | chr4_1:73784877-73784896 | None:intergenic | 60.0% |
| CGGCTACTCAGTGGATCTGC+TGG | - | chr4_1:73784892-73784911 | None:intergenic | 60.0% | |
| GGCACCTTTCGGCTACTCAG+TGG | - | chr4_1:73784901-73784920 | None:intergenic | 60.0% | |
| ! | GCAGCCACCACCGGAGTATT+AGG | - | chr4_1:73785248-73785267 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 73784811 | 73787904 | 73784811 | ID=Msa0571210;Name=Msa0571210 |
| chr4_1 | mRNA | 73784811 | 73787904 | 73784811 | ID=Msa0571210-mRNA-1;Parent=Msa0571210;Name=Msa0571210-mRNA-1;_AED=0.22;_eAED=0.22;_QI=144|1|1|1|0.75|0.6|5|327|283 |
| chr4_1 | exon | 73784811 | 73784915 | 73784811 | ID=Msa0571210-mRNA-1:exon:25324;Parent=Msa0571210-mRNA-1 |
| chr4_1 | exon | 73785107 | 73785406 | 73785107 | ID=Msa0571210-mRNA-1:exon:25325;Parent=Msa0571210-mRNA-1 |
| chr4_1 | exon | 73786201 | 73786332 | 73786201 | ID=Msa0571210-mRNA-1:exon:25326;Parent=Msa0571210-mRNA-1 |
| chr4_1 | exon | 73786428 | 73786544 | 73786428 | ID=Msa0571210-mRNA-1:exon:25327;Parent=Msa0571210-mRNA-1 |
| chr4_1 | exon | 73787236 | 73787904 | 73787236 | ID=Msa0571210-mRNA-1:exon:25328;Parent=Msa0571210-mRNA-1 |
| chr4_1 | five_prime_UTR | 73784811 | 73784915 | 73784811 | ID=Msa0571210-mRNA-1:five_prime_utr;Parent=Msa0571210-mRNA-1 |
| chr4_1 | five_prime_UTR | 73785107 | 73785145 | 73785107 | ID=Msa0571210-mRNA-1:five_prime_utr;Parent=Msa0571210-mRNA-1 |
| chr4_1 | CDS | 73785146 | 73785406 | 73785146 | ID=Msa0571210-mRNA-1:cds;Parent=Msa0571210-mRNA-1 |
| chr4_1 | CDS | 73786201 | 73786332 | 73786201 | ID=Msa0571210-mRNA-1:cds;Parent=Msa0571210-mRNA-1 |
| chr4_1 | CDS | 73786428 | 73786544 | 73786428 | ID=Msa0571210-mRNA-1:cds;Parent=Msa0571210-mRNA-1 |
| chr4_1 | CDS | 73787236 | 73787577 | 73787236 | ID=Msa0571210-mRNA-1:cds;Parent=Msa0571210-mRNA-1 |
| chr4_1 | three_prime_UTR | 73787578 | 73787904 | 73787578 | ID=Msa0571210-mRNA-1:three_prime_utr;Parent=Msa0571210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
