Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267790 | XP_013447004.1 | 97.173 | 283 | 7 | 1 | 1 | 283 | 1 | 282 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267790 | sp|Q54KJ8|T2EB_DICDI | 27.574 | 272 | 173 | 9 | 10 | 275 | 6 | 259 | 2.69e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267790 | A0A072TV28 | 97.173 | 283 | 7 | 1 | 1 | 283 | 1 | 282 | 0.0 | 562 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0571210 | Msa1267790 | 0.872719 | 2.561573e-67 | -8.615850e-47 |
| Msa0880380 | Msa1267790 | 0.952355 | 2.897589e-110 | -8.615850e-47 |
| Msa0946560 | Msa1267790 | 0.998244 | 9.462621e-260 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267790 | MtrunA17_Chr5g0397801 | 74.113 | 282 | 58 | 2 | 1 | 282 | 1 | 267 | 5.64e-149 | 417 |
| Msa1267790 | MtrunA17_Chr8g0386401 | 97.087 | 206 | 5 | 1 | 78 | 283 | 1 | 205 | 9.23e-147 | 409 |
| Msa1267790 | MtrunA17_Chr8g0386391 | 96.970 | 66 | 2 | 0 | 1 | 66 | 1 | 66 | 3.68e-39 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267790 | AT4G20330.1 | 66.312 | 282 | 92 | 2 | 1 | 282 | 1 | 279 | 9.74e-124 | 355 |
| Msa1267790 | AT4G21010.1 | 58.363 | 281 | 109 | 5 | 1 | 280 | 1 | 274 | 2.92e-96 | 285 |
Find 79 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTGCAGTGTGAATTTA+AGG | 0.122923 | 8_2:-73268306 | None:intergenic |
| TGCCCGTCGTATTCTACTTT+TGG | 0.214350 | 8_2:-73266750 | None:intergenic |
| TCCACCTTAATGTTTGCTTT+GGG | 0.248514 | 8_2:-73267751 | None:intergenic |
| ATCCACCTTAATGTTTGCTT+TGG | 0.267923 | 8_2:-73267752 | None:intergenic |
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 8_2:-73265701 | None:intergenic |
| CAGGAGTTGTTGTTTACTTT+AGG | 0.277978 | 8_2:-73268008 | None:intergenic |
| TGAAAGCTGCAGGGCAGATT+TGG | 0.288630 | 8_2:+73267680 | Msa1267790:CDS |
| ATGTTTGCTTTGGGGTCATT+CGG | 0.320738 | 8_2:-73267742 | None:intergenic |
| CTCTTTGCAGTGTTGGTAGC+AGG | 0.337273 | 8_2:-73267862 | None:intergenic |
| TCCCTTGCAGTGAGCTAATC+AGG | 0.340539 | 8_2:-73268027 | None:intergenic |
| CATGCTTCATTTATTTGCTC+TGG | 0.343949 | 8_2:-73266675 | None:intergenic |
| AACACACTCCTGATAGTTTC+AGG | 0.345135 | 8_2:-73268271 | None:intergenic |
| CAATGTGATGGAAGACTTGC+AGG | 0.356725 | 8_2:+73266979 | Msa1267790:CDS |
| ATTGGTCAGCTTGGTTCTCT+TGG | 0.364216 | 8_2:-73267959 | None:intergenic |
| CGCTTCATCTGAGCACCAAC+GGG | 0.368774 | 8_2:-73265818 | None:intergenic |
| CATTGGGGTAAGCATCCTTT+AGG | 0.372124 | 8_2:-73266961 | None:intergenic |
| CTTAGACTTGGACTTGGACT+TGG | 0.379977 | 8_2:-73267923 | None:intergenic |
| TGTTTGCTTTGGGGTCATTC+GGG | 0.391698 | 8_2:-73267741 | None:intergenic |
| TGCAAGTCTTCCATCACATT+GGG | 0.401716 | 8_2:-73266977 | None:intergenic |
| GCTGACCAATTCCCATCTTC+CGG | 0.404549 | 8_2:+73267972 | Msa1267790:CDS |
| TGACCCCAAAGCAAACATTA+AGG | 0.415737 | 8_2:+73267747 | Msa1267790:CDS |
| TTGTAGGCTTTGAAAGCTGC+AGG | 0.415846 | 8_2:+73267670 | Msa1267790:intron |
| ATGACCTAAAGCAGCTGTTT+CGG | 0.418120 | 8_2:+73267776 | Msa1267790:CDS |
| GAGAAGGATCTTCAAAAGAA+TGG | 0.418846 | 8_2:+73267832 | Msa1267790:CDS |
| ATAGGCAAAGTATGGTCTTA+AGG | 0.421161 | 8_2:+73266880 | Msa1267790:intron |
| AAGCTCCGGAAGATGGGAAT+TGG | 0.433158 | 8_2:-73267977 | None:intergenic |
| CTTGGACTTGGACTTGGACT+TGG | 0.442430 | 8_2:-73267917 | None:intergenic |
| TACTCCGAAACAGCTGCTTT+AGG | 0.444378 | 8_2:-73267780 | None:intergenic |
| GAAACTATCAGGAGTGTGTT+TGG | 0.445326 | 8_2:+73268274 | Msa1267790:three_prime_UTR |
| AGCATTGCGTCGAGCAAAGT+TGG | 0.452004 | 8_2:+73265668 | Msa1267790:CDS |
| AGTCCTCCTCTTTGCAGTGT+TGG | 0.455410 | 8_2:-73267869 | None:intergenic |
| GATTTCATTCTTCTTAGACT+TGG | 0.459783 | 8_2:-73267935 | None:intergenic |
| TTAGCTTAAGCTAGATCAGC+AGG | 0.464163 | 8_2:+73268075 | Msa1267790:three_prime_UTR |
| CCACCTTAATGTTTGCTTTG+GGG | 0.471247 | 8_2:-73267750 | None:intergenic |
| TCAGTGGATCTGCTGGTCAC+TGG | 0.473850 | 8_2:-73265348 | None:intergenic |
| CGGTTACTCAGTGGATCTGC+TGG | 0.487745 | 8_2:-73265355 | None:intergenic |
| GCTGTCCAACTTTGATTCAC+AGG | 0.488075 | 8_2:+73267705 | Msa1267790:CDS |
| AGGACTGCAGCACAAATTGA+TGG | 0.492183 | 8_2:+73267886 | Msa1267790:CDS |
| ACATCAAGGGTGTAAGCAAA+TGG | 0.493627 | 8_2:+73268163 | Msa1267790:three_prime_UTR |
| GATGCATTTGCAGCCACCAC+CGG | 0.494981 | 8_2:-73265710 | None:intergenic |
| GCTGCAAATGCATCAGCAAA+TGG | 0.504031 | 8_2:+73265719 | Msa1267790:CDS |
| AAGCATGCTATGTTGATATG+AGG | 0.505702 | 8_2:+73266691 | Msa1267790:CDS |
| GTCGTCCTGTGAATCAAAGT+TGG | 0.513690 | 8_2:-73267710 | None:intergenic |
| ATTCTTCTTAGACTTGGACT+TGG | 0.515148 | 8_2:-73267929 | None:intergenic |
| CTGCAAGTCTTCCATCACAT+TGG | 0.523283 | 8_2:-73266978 | None:intergenic |
| CTCTGCAAGAGCAACTAGAT+AGG | 0.523289 | 8_2:+73265606 | Msa1267790:CDS |
| AAGTAGAATACGACGGGCAA+CGG | 0.531226 | 8_2:+73266754 | Msa1267790:CDS |
| CGGGCAACGGTTCTCTTACA+AGG | 0.541030 | 8_2:+73266767 | Msa1267790:CDS |
| AAGATGGGAATTGGTCAGCT+TGG | 0.557060 | 8_2:-73267968 | None:intergenic |
| TGTTATTGATCTATTGCTTG+AGG | 0.558507 | 8_2:+73265841 | Msa1267790:CDS |
| ACCCAAAAGTAGAATACGAC+GGG | 0.561755 | 8_2:+73266748 | Msa1267790:CDS |
| GGATGCTTACCCCAATGTGA+TGG | 0.574607 | 8_2:+73266967 | Msa1267790:CDS |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 8_2:+73265697 | Msa1267790:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 8_2:+73265691 | Msa1267790:CDS |
| ACGCTTCATCTGAGCACCAA+CGG | 0.595575 | 8_2:-73265819 | None:intergenic |
| TCTGCTGGTCACTGGCTGTG+TGG | 0.600374 | 8_2:-73265340 | None:intergenic |
| AGCTTCTTCAACTTATACGT+AGG | 0.600973 | 8_2:+73266912 | Msa1267790:CDS |
| TCCTGATTAGCTCACTGCAA+GGG | 0.613343 | 8_2:+73268026 | Msa1267790:three_prime_UTR |
| GGTGTAAGCAAATGGTGGAC+TGG | 0.615267 | 8_2:+73268171 | Msa1267790:three_prime_UTR |
| TGATATGATTGATATAGAGA+AGG | 0.617718 | 8_2:+73267816 | Msa1267790:CDS |
| CTCCTGATTAGCTCACTGCA+AGG | 0.620794 | 8_2:+73268025 | Msa1267790:three_prime_UTR |
| CCCCAAAGCAAACATTAAGG+TGG | 0.623815 | 8_2:+73267750 | Msa1267790:CDS |
| AATTCTCAAGTGACACTGAG+AGG | 0.626331 | 8_2:+73265765 | Msa1267790:CDS |
| AGCATGCTATGTTGATATGA+GGG | 0.636991 | 8_2:+73266692 | Msa1267790:CDS |
| GGCACCTTTCGGTTACTCAG+TGG | 0.639375 | 8_2:-73265364 | None:intergenic |
| TGTAGGCTTTGAAAGCTGCA+GGG | 0.643501 | 8_2:+73267671 | Msa1267790:intron |
| TGGCTGTGTGCAATCAATGA+CGG | 0.655075 | 8_2:-73265320 | None:intergenic |
| CTACCAACACTGCAAAGAGG+AGG | 0.656479 | 8_2:+73267866 | Msa1267790:CDS |
| TCAAGGGTGTAAGCAAATGG+TGG | 0.658420 | 8_2:+73268166 | Msa1267790:three_prime_UTR |
| CTGCTACCAACACTGCAAAG+AGG | 0.665956 | 8_2:+73267863 | Msa1267790:CDS |
| GCTTCATCTGAGCACCAACG+GGG | 0.666699 | 8_2:-73265817 | None:intergenic |
| ACTTATACGTAGGTATCCAG+AGG | 0.677982 | 8_2:+73266922 | Msa1267790:CDS |
| AGATCCACTGAGTAACCGAA+AGG | 0.686502 | 8_2:+73265360 | Msa1267790:five_prime_UTR |
| CTTATACGTAGGTATCCAGA+GGG | 0.688413 | 8_2:+73266923 | Msa1267790:CDS |
| AACCCAAAAGTAGAATACGA+CGG | 0.689064 | 8_2:+73266747 | Msa1267790:CDS |
| GCAAGTCTTCCATCACATTG+GGG | 0.693489 | 8_2:-73266976 | None:intergenic |
| CTTCATCTGAGCACCAACGG+GGG | 0.696908 | 8_2:-73265816 | None:intergenic |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 8_2:+73265694 | Msa1267790:CDS |
| TCTATATCAATCATATCACG+AGG | 0.742182 | 8_2:-73267811 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACCTTAATTTATAATAA+TGG | - | chr8_2:73267290-73267309 | None:intergenic | 10.0% |
| !! | GAAAAATAAAATATTAAACA+AGG | - | chr8_2:73268249-73268268 | None:intergenic | 10.0% |
| !!! | TTTTAGAGGATTTTTAAAAA+AGG | - | chr8_2:73265460-73265479 | None:intergenic | 15.0% |
| !!! | TTGTTTGTTTTTTCATTTAT+TGG | + | chr8_2:73265897-73265916 | Msa1267790:intron | 15.0% |
| !! | ATTGAAACTAATAATATGTT+TGG | + | chr8_2:73266082-73266101 | Msa1267790:intron | 15.0% |
| !! | TTAATTTATAATAATGGCAA+CGG | - | chr8_2:73267284-73267303 | None:intergenic | 15.0% |
| !! | AATAAACAAAACAAATGAAT+AGG | - | chr8_2:73267420-73267439 | None:intergenic | 15.0% |
| !! | AAAAACAAATATCAAAAGTA+GGG | - | chr8_2:73268134-73268153 | None:intergenic | 15.0% |
| !! | TAAAAACAAATATCAAAAGT+AGG | - | chr8_2:73268135-73268154 | None:intergenic | 15.0% |
| !!! | TTTTTAGTTTTTATACATCA+AGG | + | chr8_2:73268149-73268168 | Msa1267790:three_prime_UTR | 15.0% |
| !!! | TTTTAGTTTTTATACATCAA+GGG | + | chr8_2:73268150-73268169 | Msa1267790:three_prime_UTR | 15.0% |
| !! | GATGTGAAAATAAAAAGTAA+CGG | - | chr8_2:73265416-73265435 | None:intergenic | 20.0% |
| !!! | TTTTTAAAAAAGGAATGGTT+AGG | - | chr8_2:73265450-73265469 | None:intergenic | 20.0% |
| !!! | TAAAAATCCTCTAAAAACTT+AGG | + | chr8_2:73265464-73265483 | Msa1267790:intron | 20.0% |
| !!! | AAAAATCCTCTAAAAACTTA+GGG | + | chr8_2:73265465-73265484 | Msa1267790:intron | 20.0% |
| !!! | TATTAGTTTCAATTTGCAAT+TGG | - | chr8_2:73266075-73266094 | None:intergenic | 20.0% |
| !! | ATTAAGTTCTCAATATGTTA+GGG | - | chr8_2:73266223-73266242 | None:intergenic | 20.0% |
| !! | AATTAAGTTCTCAATATGTT+AGG | - | chr8_2:73266224-73266243 | None:intergenic | 20.0% |
| !! | ACTTAAATAGATGACATAAA+GGG | + | chr8_2:73266302-73266321 | Msa1267790:intron | 20.0% |
| !!! | GTTATTTGTTTTTTGTCTAT+AGG | + | chr8_2:73266862-73266881 | Msa1267790:intron | 20.0% |
| !!! | AAGAAGATCAAATGTTTTAT+GGG | + | chr8_2:73267183-73267202 | Msa1267790:intron | 20.0% |
| !! | GTTGCCATTATTATAAATTA+AGG | + | chr8_2:73267283-73267302 | Msa1267790:intron | 20.0% |
| !! | ATAAATTAAGGTTAATACTG+AGG | + | chr8_2:73267295-73267314 | Msa1267790:intron | 20.0% |
| !! | TTAATGTTTGTCTTGAAATA+TGG | + | chr8_2:73267517-73267536 | Msa1267790:intron | 20.0% |
| !!! | TCATAATGATATCTTTTTGT+AGG | + | chr8_2:73267654-73267673 | Msa1267790:intron | 20.0% |
| !!! | GAGGATTTTTAAAAAAGGAA+TGG | - | chr8_2:73265455-73265474 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTTGGTGAAAAA+TGG | + | chr8_2:73265583-73265602 | Msa1267790:exon | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | + | chr8_2:73265737-73265756 | Msa1267790:CDS | 25.0% |
| ! | TTTCATTTATTGGAAGTTTC+TGG | + | chr8_2:73265907-73265926 | Msa1267790:intron | 25.0% |
| ! | AAACTAATAATATGTTTGGC+TGG | + | chr8_2:73266086-73266105 | Msa1267790:intron | 25.0% |
| ! | GACTTAAATAGATGACATAA+AGG | + | chr8_2:73266301-73266320 | Msa1267790:intron | 25.0% |
| ! | TACATATCACTTATGTAGAA+TGG | + | chr8_2:73266363-73266382 | Msa1267790:intron | 25.0% |
| ! | ATACTCTTAATCAATGTTCA+CGG | - | chr8_2:73266416-73266435 | None:intergenic | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | - | chr8_2:73266840-73266859 | None:intergenic | 25.0% |
| ! | ACATTTGATCTTCTTCAAAA+GGG | - | chr8_2:73267178-73267197 | None:intergenic | 25.0% |
| ! | AACATTTGATCTTCTTCAAA+AGG | - | chr8_2:73267179-73267198 | None:intergenic | 25.0% |
| !! | GAAGAAGATCAAATGTTTTA+TGG | + | chr8_2:73267182-73267201 | Msa1267790:intron | 25.0% |
| ! | ATAATAACATTGCACATTAG+TGG | + | chr8_2:73267210-73267229 | Msa1267790:intron | 25.0% |
| ! | TAATAACATTGCACATTAGT+GGG | + | chr8_2:73267211-73267230 | Msa1267790:intron | 25.0% |
| ! | ATGGAAATAGAGATTATAGA+TGG | + | chr8_2:73267536-73267555 | Msa1267790:intron | 25.0% |
| ! | GTCAAAATCTTGTATATAGT+TGG | + | chr8_2:73267612-73267631 | Msa1267790:intron | 25.0% |
| ! | TGATATGATTGATATAGAGA+AGG | + | chr8_2:73267816-73267835 | Msa1267790:CDS | 25.0% |
| !! | ACAAAACCCTAAGTTTTTAG+AGG | - | chr8_2:73265474-73265493 | None:intergenic | 30.0% |
| CATCAATGAAATTTCGAAAG+AGG | - | chr8_2:73265511-73265530 | None:intergenic | 30.0% | |
| TTGTGAACAATCCTTTATTC+AGG | + | chr8_2:73265541-73265560 | Msa1267790:intron | 30.0% | |
| TGTTATTGATCTATTGCTTG+AGG | + | chr8_2:73265841-73265860 | Msa1267790:CDS | 30.0% | |
| ! | CTATTGCTTGAGGTAATTTT+TGG | + | chr8_2:73265851-73265870 | Msa1267790:intron | 30.0% |
| TAACCTCAAACTTAACAGAT+GGG | - | chr8_2:73266027-73266046 | None:intergenic | 30.0% | |
| TTAACCTCAAACTTAACAGA+TGG | - | chr8_2:73266028-73266047 | None:intergenic | 30.0% | |
| GTTTGCAAATTAAGCATACA+AGG | + | chr8_2:73266269-73266288 | Msa1267790:intron | 30.0% | |
| ! | AGTCATCTTCCAAGATATTT+TGG | + | chr8_2:73266483-73266502 | Msa1267790:intron | 30.0% |
| CATCAAACTCCAAAATATCT+TGG | - | chr8_2:73266495-73266514 | None:intergenic | 30.0% | |
| !!! | CAAGATATTTTGGAGTTTGA+TGG | + | chr8_2:73266493-73266512 | Msa1267790:intron | 30.0% |
| ACCAATGAAATTCCACAATT+AGG | + | chr8_2:73266585-73266604 | Msa1267790:intron | 30.0% | |
| TCCTAATTGTGGAATTTCAT+TGG | - | chr8_2:73266589-73266608 | None:intergenic | 30.0% | |
| ! | TCGTCAAAACCATATTGATT+TGG | + | chr8_2:73266615-73266634 | Msa1267790:intron | 30.0% |
| !!! | ACCATATTGATTTGGTGTTT+TGG | + | chr8_2:73266623-73266642 | Msa1267790:intron | 30.0% |
| ACCAAAACACCAAATCAATA+TGG | - | chr8_2:73266627-73266646 | None:intergenic | 30.0% | |
| ! | CTCTTACAAGGTAACTTTTA+CGG | + | chr8_2:73266779-73266798 | Msa1267790:intron | 30.0% |
| ! | TCTTACAAGGTAACTTTTAC+GGG | + | chr8_2:73266780-73266799 | Msa1267790:intron | 30.0% |
| ! | TTTTGTCTATAGGCAAAGTA+TGG | + | chr8_2:73266872-73266891 | Msa1267790:intron | 30.0% |
| AATTCTCATTTCTCACAGAT+TGG | + | chr8_2:73267101-73267120 | Msa1267790:intron | 30.0% | |
| ! | TAAGGAGCAAGATTTTGTAA+TGG | - | chr8_2:73267344-73267363 | None:intergenic | 30.0% |
| TTACAAAATCTTGCTCCTTA+AGG | + | chr8_2:73267344-73267363 | Msa1267790:intron | 30.0% | |
| AGATTATAGATGGAACTATC+AGG | + | chr8_2:73267546-73267565 | Msa1267790:intron | 30.0% | |
| AAAAACATCACCTATCACTA+AGG | - | chr8_2:73267579-73267598 | None:intergenic | 30.0% | |
| !!! | TAGTTGGCTTTTCAATGAAT+AGG | + | chr8_2:73267628-73267647 | Msa1267790:intron | 30.0% |
| TCTATATCAATCATATCACG+AGG | - | chr8_2:73267814-73267833 | None:intergenic | 30.0% | |
| GATTTCATTCTTCTTAGACT+TGG | - | chr8_2:73267938-73267957 | None:intergenic | 30.0% | |
| TGAAAACATGGCGTTGTTAA+CGG | - | chr8_2:73265388-73265407 | None:intergenic | 35.0% | |
| ! | GTAACGGAAGATTGAAAACA+TGG | - | chr8_2:73265400-73265419 | None:intergenic | 35.0% |
| GAACAACTTCACCTGAATAA+AGG | - | chr8_2:73265555-73265574 | None:intergenic | 35.0% | |
| !!! | TCGTGCGATTTTCAAGTTTT+TGG | + | chr8_2:73265573-73265592 | Msa1267790:five_prime_UTR | 35.0% |
| TAGCAGAAAACCTAATACTC+CGG | + | chr8_2:73265691-73265710 | Msa1267790:CDS | 35.0% | |
| ! | CATTTATTGGAAGTTTCTGG+TGG | + | chr8_2:73265910-73265929 | Msa1267790:intron | 35.0% |
| AGTTCTCAATATGTTAGGGT+GGG | - | chr8_2:73266219-73266238 | None:intergenic | 35.0% | |
| AAGTTCTCAATATGTTAGGG+TGG | - | chr8_2:73266220-73266239 | None:intergenic | 35.0% | |
| CAAATTAAGCATACAAGGTC+AGG | + | chr8_2:73266274-73266293 | Msa1267790:intron | 35.0% | |
| ATCACTTATGTAGAATGGTG+TGG | + | chr8_2:73266368-73266387 | Msa1267790:intron | 35.0% | |
| ATGCATCTTGTAGATCGTTA+TGG | - | chr8_2:73266446-73266465 | None:intergenic | 35.0% | |
| TAACGATCTACAAGATGCAT+AGG | + | chr8_2:73266446-73266465 | Msa1267790:intron | 35.0% | |
| ! | GAGTTTGATGGATGTTATGT+TGG | + | chr8_2:73266505-73266524 | Msa1267790:intron | 35.0% |
| GTAAGCTATCTTAAGTAGCA+TGG | - | chr8_2:73266567-73266586 | None:intergenic | 35.0% | |
| GACGAATCAATTCCTAATTG+TGG | - | chr8_2:73266600-73266619 | None:intergenic | 35.0% | |
| CATGCTTCATTTATTTGCTC+TGG | - | chr8_2:73266678-73266697 | None:intergenic | 35.0% | |
| AAGCATGCTATGTTGATATG+AGG | + | chr8_2:73266691-73266710 | Msa1267790:CDS | 35.0% | |
| AGCATGCTATGTTGATATGA+GGG | + | chr8_2:73266692-73266711 | Msa1267790:CDS | 35.0% | |
| !! | AAGATGTTTTTGAGAGTCTG+AGG | + | chr8_2:73266721-73266740 | Msa1267790:CDS | 35.0% |
| AACCCAAAAGTAGAATACGA+CGG | + | chr8_2:73266747-73266766 | Msa1267790:CDS | 35.0% | |
| ! | ATAGGCAAAGTATGGTCTTA+AGG | + | chr8_2:73266880-73266899 | Msa1267790:intron | 35.0% |
| AGCTTCTTCAACTTATACGT+AGG | + | chr8_2:73266912-73266931 | Msa1267790:CDS | 35.0% | |
| AGGTAGAATGACTTCTGTTA+GGG | + | chr8_2:73266999-73267018 | Msa1267790:intron | 35.0% | |
| ACATTTCTTACAGCACCTTA+AGG | - | chr8_2:73267362-73267381 | None:intergenic | 35.0% | |
| !! | TTAAGGTGCTGTAAGAAATG+TGG | + | chr8_2:73267361-73267380 | Msa1267790:intron | 35.0% |
| GAATAGGAAGTGAATGAACA+AGG | - | chr8_2:73267404-73267423 | None:intergenic | 35.0% | |
| CATGTAAACGTCAATGAGAA+TGG | - | chr8_2:73267466-73267485 | None:intergenic | 35.0% | |
| TACATGATACCGAGACATTA+AGG | + | chr8_2:73267480-73267499 | Msa1267790:intron | 35.0% | |
| ACATGATACCGAGACATTAA+GGG | + | chr8_2:73267481-73267500 | Msa1267790:intron | 35.0% | |
| TCCACCTTAATGTTTGCTTT+GGG | - | chr8_2:73267754-73267773 | None:intergenic | 35.0% | |
| ATCCACCTTAATGTTTGCTT+TGG | - | chr8_2:73267755-73267774 | None:intergenic | 35.0% | |
| GAGAAGGATCTTCAAAAGAA+TGG | + | chr8_2:73267832-73267851 | Msa1267790:CDS | 35.0% | |
| ATTCTTCTTAGACTTGGACT+TGG | - | chr8_2:73267932-73267951 | None:intergenic | 35.0% | |
| !! | TTTAGGTTCTGAAAAAGCTC+CGG | - | chr8_2:73267994-73268013 | None:intergenic | 35.0% |
| !! | CAGGAGTTGTTGTTTACTTT+AGG | - | chr8_2:73268011-73268030 | None:intergenic | 35.0% |
| ! | CAGCAGGTTGAAAAATATTC+AGG | + | chr8_2:73268091-73268110 | Msa1267790:three_prime_UTR | 35.0% |
| ! | CAGGTTGAAAAATATTCAGG+AGG | + | chr8_2:73268094-73268113 | Msa1267790:three_prime_UTR | 35.0% |
| TGTCTTGCAGTGTGAATTTA+AGG | - | chr8_2:73268309-73268328 | None:intergenic | 35.0% | |
| AATTCTCAAGTGACACTGAG+AGG | + | chr8_2:73265765-73265784 | Msa1267790:CDS | 40.0% | |
| ! | TTAACAGATGGGCTTCTCAA+AGG | - | chr8_2:73266016-73266035 | None:intergenic | 40.0% |
| AAGCCCATCTGTTAAGTTTG+AGG | + | chr8_2:73266021-73266040 | Msa1267790:intron | 40.0% | |
| TGAGTTTGGCTAAATCACTG+TGG | + | chr8_2:73266113-73266132 | Msa1267790:intron | 40.0% | |
| GAGTTTGGCTAAATCACTGT+GGG | + | chr8_2:73266114-73266133 | Msa1267790:intron | 40.0% | |
| AGTTTGGCTAAATCACTGTG+GGG | + | chr8_2:73266115-73266134 | Msa1267790:intron | 40.0% | |
| GTGATATGTAAACGAACCTG+TGG | - | chr8_2:73266353-73266372 | None:intergenic | 40.0% | |
| ACCCAAAAGTAGAATACGAC+GGG | + | chr8_2:73266748-73266767 | Msa1267790:CDS | 40.0% | |
| ACTTATACGTAGGTATCCAG+AGG | + | chr8_2:73266922-73266941 | Msa1267790:CDS | 40.0% | |
| CTTATACGTAGGTATCCAGA+GGG | + | chr8_2:73266923-73266942 | Msa1267790:CDS | 40.0% | |
| CCTTTAGGTCAAAAACAGCA+AGG | - | chr8_2:73266949-73266968 | None:intergenic | 40.0% | |
| !!! | CCTTGCTGTTTTTGACCTAA+AGG | + | chr8_2:73266946-73266965 | Msa1267790:CDS | 40.0% |
| TGCAAGTCTTCCATCACATT+GGG | - | chr8_2:73266980-73266999 | None:intergenic | 40.0% | |
| CAGGTAGAATGACTTCTGTT+AGG | + | chr8_2:73266998-73267017 | Msa1267790:intron | 40.0% | |
| GAAAAAACGTCGTCAGGAAA+TGG | - | chr8_2:73267046-73267065 | None:intergenic | 40.0% | |
| AATGAACAAGGTAGCAGGAA+AGG | - | chr8_2:73267392-73267411 | None:intergenic | 40.0% | |
| AAGTGAATGAACAAGGTAGC+AGG | - | chr8_2:73267397-73267416 | None:intergenic | 40.0% | |
| TGAGAATGGAAGCAAAGAGA+AGG | - | chr8_2:73267452-73267471 | None:intergenic | 40.0% | |
| TCACTCTTCCCTTAATGTCT+CGG | - | chr8_2:73267492-73267511 | None:intergenic | 40.0% | |
| AGGTCATATGCCTTAGTGAT+AGG | + | chr8_2:73267566-73267585 | Msa1267790:intron | 40.0% | |
| !! | ATGTTTGCTTTGGGGTCATT+CGG | - | chr8_2:73267745-73267764 | None:intergenic | 40.0% |
| TGACCCCAAAGCAAACATTA+AGG | + | chr8_2:73267747-73267766 | Msa1267790:CDS | 40.0% | |
| CCACCTTAATGTTTGCTTTG+GGG | - | chr8_2:73267753-73267772 | None:intergenic | 40.0% | |
| ATGACCTAAAGCAGCTGTTT+CGG | + | chr8_2:73267776-73267795 | Msa1267790:CDS | 40.0% | |
| TTAGCTTAAGCTAGATCAGC+AGG | + | chr8_2:73268075-73268094 | Msa1267790:three_prime_UTR | 40.0% | |
| ! | ACATCAAGGGTGTAAGCAAA+TGG | + | chr8_2:73268163-73268182 | Msa1267790:three_prime_UTR | 40.0% |
| !! | TTTTTCGGCCTGAAACTATC+AGG | + | chr8_2:73268263-73268282 | Msa1267790:three_prime_UTR | 40.0% |
| AACACACTCCTGATAGTTTC+AGG | - | chr8_2:73268274-73268293 | None:intergenic | 40.0% | |
| ! | GAAACTATCAGGAGTGTGTT+TGG | + | chr8_2:73268274-73268293 | Msa1267790:three_prime_UTR | 40.0% |
| TGGCTGTGTGCAATCAATGA+CGG | - | chr8_2:73265323-73265342 | None:intergenic | 45.0% | |
| AGATCCACTGAGTAACCGAA+AGG | + | chr8_2:73265360-73265379 | Msa1267790:five_prime_UTR | 45.0% | |
| CTCTGCAAGAGCAACTAGAT+AGG | + | chr8_2:73265606-73265625 | Msa1267790:CDS | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | + | chr8_2:73265694-73265713 | Msa1267790:CDS | 45.0% | |
| AAAACCTAATACTCCGGTGG+TGG | + | chr8_2:73265697-73265716 | Msa1267790:CDS | 45.0% | |
| GCTGCAAATGCATCAGCAAA+TGG | + | chr8_2:73265719-73265738 | Msa1267790:CDS | 45.0% | |
| AATATACGTAAAGCCCCCGT+TGG | + | chr8_2:73265803-73265822 | Msa1267790:CDS | 45.0% | |
| ! | TTTTCCCTCGTCTCATGCAT+CGG | - | chr8_2:73265952-73265971 | None:intergenic | 45.0% |
| TCTCAATATGTTAGGGTGGG+CGG | - | chr8_2:73266216-73266235 | None:intergenic | 45.0% | |
| TATGTAAACGAACCTGTGGC+AGG | - | chr8_2:73266349-73266368 | None:intergenic | 45.0% | |
| !! | GCCCGTCGTATTCTACTTTT+GGG | - | chr8_2:73266752-73266771 | None:intergenic | 45.0% |
| ! | TGCCCGTCGTATTCTACTTT+TGG | - | chr8_2:73266753-73266772 | None:intergenic | 45.0% |
| AAGTAGAATACGACGGGCAA+CGG | + | chr8_2:73266754-73266773 | Msa1267790:CDS | 45.0% | |
| CATTGGGGTAAGCATCCTTT+AGG | - | chr8_2:73266964-73266983 | None:intergenic | 45.0% | |
| GCAAGTCTTCCATCACATTG+GGG | - | chr8_2:73266979-73266998 | None:intergenic | 45.0% | |
| CTGCAAGTCTTCCATCACAT+TGG | - | chr8_2:73266981-73267000 | None:intergenic | 45.0% | |
| ! | CAATGTGATGGAAGACTTGC+AGG | + | chr8_2:73266979-73266998 | Msa1267790:CDS | 45.0% |
| GCTACTGAAAAAACGTCGTC+AGG | - | chr8_2:73267052-73267071 | None:intergenic | 45.0% | |
| !!! | CGACGTTTTTTCAGTAGCAG+TGG | + | chr8_2:73267054-73267073 | Msa1267790:intron | 45.0% |
| !!! | TTCCACTTTTTCCCAACCCT+TGG | + | chr8_2:73267250-73267269 | Msa1267790:intron | 45.0% |
| !! | CGGTTTTAATGCCAAGGGTT+GGG | - | chr8_2:73267264-73267283 | None:intergenic | 45.0% |
| !! | ACGGTTTTAATGCCAAGGGT+TGG | - | chr8_2:73267265-73267284 | None:intergenic | 45.0% |
| !! | GGCAACGGTTTTAATGCCAA+GGG | - | chr8_2:73267269-73267288 | None:intergenic | 45.0% |
| !! | TGGCAACGGTTTTAATGCCA+AGG | - | chr8_2:73267270-73267289 | None:intergenic | 45.0% |
| !! | TTGTAGGCTTTGAAAGCTGC+AGG | + | chr8_2:73267670-73267689 | Msa1267790:intron | 45.0% |
| !! | TGTAGGCTTTGAAAGCTGCA+GGG | + | chr8_2:73267671-73267690 | Msa1267790:intron | 45.0% |
| GCTGTCCAACTTTGATTCAC+AGG | + | chr8_2:73267705-73267724 | Msa1267790:CDS | 45.0% | |
| GTCGTCCTGTGAATCAAAGT+TGG | - | chr8_2:73267713-73267732 | None:intergenic | 45.0% | |
| !! | TGTTTGCTTTGGGGTCATTC+GGG | - | chr8_2:73267744-73267763 | None:intergenic | 45.0% |
| CCCCAAAGCAAACATTAAGG+TGG | + | chr8_2:73267750-73267769 | Msa1267790:CDS | 45.0% | |
| ! | TACTCCGAAACAGCTGCTTT+AGG | - | chr8_2:73267783-73267802 | None:intergenic | 45.0% |
| AGGACTGCAGCACAAATTGA+TGG | + | chr8_2:73267886-73267905 | Msa1267790:CDS | 45.0% | |
| CTTAGACTTGGACTTGGACT+TGG | - | chr8_2:73267926-73267945 | None:intergenic | 45.0% | |
| ! | ATTGGTCAGCTTGGTTCTCT+TGG | - | chr8_2:73267962-73267981 | None:intergenic | 45.0% |
| AAGATGGGAATTGGTCAGCT+TGG | - | chr8_2:73267971-73267990 | None:intergenic | 45.0% | |
| CTGAAAAAGCTCCGGAAGAT+GGG | - | chr8_2:73267986-73268005 | None:intergenic | 45.0% | |
| TCTGAAAAAGCTCCGGAAGA+TGG | - | chr8_2:73267987-73268006 | None:intergenic | 45.0% | |
| ! | TCCTGATTAGCTCACTGCAA+GGG | + | chr8_2:73268026-73268045 | Msa1267790:three_prime_UTR | 45.0% |
| ! | TCAAGGGTGTAAGCAAATGG+TGG | + | chr8_2:73268166-73268185 | Msa1267790:three_prime_UTR | 45.0% |
| !!! | TTGTTTAATATTTTATTTTT+CGG | + | chr8_2:73268248-73268267 | Msa1267790:three_prime_UTR | 5.0% |
| GCGTTGTTAACGGCACCTTT+CGG | - | chr8_2:73265378-73265397 | None:intergenic | 50.0% | |
| AGCATTGCGTCGAGCAAAGT+TGG | + | chr8_2:73265668-73265687 | Msa1267790:CDS | 50.0% | |
| ACGCTTCATCTGAGCACCAA+CGG | - | chr8_2:73265822-73265841 | None:intergenic | 50.0% | |
| TGATTCCGATGCATGAGACG+AGG | + | chr8_2:73265944-73265963 | Msa1267790:intron | 50.0% | |
| GATTCCGATGCATGAGACGA+GGG | + | chr8_2:73265945-73265964 | Msa1267790:intron | 50.0% | |
| GTTTGGCTGGACACTGAGTT+TGG | + | chr8_2:73266099-73266118 | Msa1267790:intron | 50.0% | |
| TCAAATCCCAATCCTGCCAC+AGG | + | chr8_2:73266334-73266353 | Msa1267790:intron | 50.0% | |
| AACGAACCTGTGGCAGGATT+GGG | - | chr8_2:73266343-73266362 | None:intergenic | 50.0% | |
| AAACGAACCTGTGGCAGGAT+TGG | - | chr8_2:73266344-73266363 | None:intergenic | 50.0% | |
| TCAAAAACAGCAAGGCCCTC+TGG | - | chr8_2:73266941-73266960 | None:intergenic | 50.0% | |
| GGATGCTTACCCCAATGTGA+TGG | + | chr8_2:73266967-73266986 | Msa1267790:CDS | 50.0% | |
| TGCCAAGGGTTGGGAAAAAG+TGG | - | chr8_2:73267255-73267274 | None:intergenic | 50.0% | |
| TGAAAGCTGCAGGGCAGATT+TGG | + | chr8_2:73267680-73267699 | Msa1267790:CDS | 50.0% | |
| !! | CTCTTTGCAGTGTTGGTAGC+AGG | - | chr8_2:73267865-73267884 | None:intergenic | 50.0% |
| CTGCTACCAACACTGCAAAG+AGG | + | chr8_2:73267863-73267882 | Msa1267790:CDS | 50.0% | |
| CTACCAACACTGCAAAGAGG+AGG | + | chr8_2:73267866-73267885 | Msa1267790:CDS | 50.0% | |
| AGTCCTCCTCTTTGCAGTGT+TGG | - | chr8_2:73267872-73267891 | None:intergenic | 50.0% | |
| CTTGGACTTGGACTTGGACT+TGG | - | chr8_2:73267920-73267939 | None:intergenic | 50.0% | |
| GCTGACCAATTCCCATCTTC+CGG | + | chr8_2:73267972-73267991 | Msa1267790:CDS | 50.0% | |
| AAGCTCCGGAAGATGGGAAT+TGG | - | chr8_2:73267980-73267999 | None:intergenic | 50.0% | |
| ! | CTCCTGATTAGCTCACTGCA+AGG | + | chr8_2:73268025-73268044 | Msa1267790:three_prime_UTR | 50.0% |
| TCCCTTGCAGTGAGCTAATC+AGG | - | chr8_2:73268030-73268049 | None:intergenic | 50.0% | |
| !! | GGTGTAAGCAAATGGTGGAC+TGG | + | chr8_2:73268171-73268190 | Msa1267790:three_prime_UTR | 50.0% |
| TCAGTGGATCTGCTGGTCAC+TGG | - | chr8_2:73265351-73265370 | None:intergenic | 55.0% | |
| CGGTTACTCAGTGGATCTGC+TGG | - | chr8_2:73265358-73265377 | None:intergenic | 55.0% | |
| GGCACCTTTCGGTTACTCAG+TGG | - | chr8_2:73265367-73265386 | None:intergenic | 55.0% | |
| GATGCATTTGCAGCCACCAC+CGG | - | chr8_2:73265713-73265732 | None:intergenic | 55.0% | |
| CTTCATCTGAGCACCAACGG+GGG | - | chr8_2:73265819-73265838 | None:intergenic | 55.0% | |
| GCTTCATCTGAGCACCAACG+GGG | - | chr8_2:73265820-73265839 | None:intergenic | 55.0% | |
| CGCTTCATCTGAGCACCAAC+GGG | - | chr8_2:73265821-73265840 | None:intergenic | 55.0% | |
| CGGGCAACGGTTCTCTTACA+AGG | + | chr8_2:73266767-73266786 | Msa1267790:CDS | 55.0% | |
| ! | TCTGCTGGTCACTGGCTGTG+TGG | - | chr8_2:73265343-73265362 | None:intergenic | 60.0% |
| ! | GCAGCCACCACCGGAGTATT+AGG | - | chr8_2:73265704-73265723 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 73265277 | 73268344 | 73265277 | ID=Msa1267790;Name=Msa1267790 |
| chr8_2 | mRNA | 73265277 | 73268344 | 73265277 | ID=Msa1267790-mRNA-1;Parent=Msa1267790;Name=Msa1267790-mRNA-1;_AED=0.22;_eAED=0.22;_QI=144|1|1|1|0.75|0.6|5|327|283 |
| chr8_2 | exon | 73265277 | 73265381 | 73265277 | ID=Msa1267790-mRNA-1:exon:24830;Parent=Msa1267790-mRNA-1 |
| chr8_2 | exon | 73265563 | 73265862 | 73265563 | ID=Msa1267790-mRNA-1:exon:24831;Parent=Msa1267790-mRNA-1 |
| chr8_2 | exon | 73266657 | 73266788 | 73266657 | ID=Msa1267790-mRNA-1:exon:24832;Parent=Msa1267790-mRNA-1 |
| chr8_2 | exon | 73266884 | 73267000 | 73266884 | ID=Msa1267790-mRNA-1:exon:24833;Parent=Msa1267790-mRNA-1 |
| chr8_2 | exon | 73267676 | 73268344 | 73267676 | ID=Msa1267790-mRNA-1:exon:24834;Parent=Msa1267790-mRNA-1 |
| chr8_2 | five_prime_UTR | 73265277 | 73265381 | 73265277 | ID=Msa1267790-mRNA-1:five_prime_utr;Parent=Msa1267790-mRNA-1 |
| chr8_2 | five_prime_UTR | 73265563 | 73265601 | 73265563 | ID=Msa1267790-mRNA-1:five_prime_utr;Parent=Msa1267790-mRNA-1 |
| chr8_2 | CDS | 73265602 | 73265862 | 73265602 | ID=Msa1267790-mRNA-1:cds;Parent=Msa1267790-mRNA-1 |
| chr8_2 | CDS | 73266657 | 73266788 | 73266657 | ID=Msa1267790-mRNA-1:cds;Parent=Msa1267790-mRNA-1 |
| chr8_2 | CDS | 73266884 | 73267000 | 73266884 | ID=Msa1267790-mRNA-1:cds;Parent=Msa1267790-mRNA-1 |
| chr8_2 | CDS | 73267676 | 73268017 | 73267676 | ID=Msa1267790-mRNA-1:cds;Parent=Msa1267790-mRNA-1 |
| chr8_2 | three_prime_UTR | 73268018 | 73268344 | 73268018 | ID=Msa1267790-mRNA-1:three_prime_utr;Parent=Msa1267790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
