Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880380 | XP_013447004.1 | 97.173 | 283 | 7 | 1 | 1 | 283 | 1 | 282 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880380 | sp|Q54KJ8|T2EB_DICDI | 27.574 | 272 | 173 | 9 | 10 | 275 | 6 | 259 | 2.69e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880380 | A0A072TV28 | 97.173 | 283 | 7 | 1 | 1 | 283 | 1 | 282 | 0.0 | 562 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0571210 | Msa0880380 | 0.836554 | 8.742616e-57 | -8.615850e-47 |
| Msa0844970 | Msa0880380 | 0.804890 | 1.738422e-49 | -8.615850e-47 |
| Msa0880380 | Msa0946560 | 0.950165 | 2.892734e-108 | -8.615850e-47 |
| Msa0880380 | Msa1267790 | 0.952355 | 2.897589e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880380 | MtrunA17_Chr5g0397801 | 74.113 | 282 | 58 | 2 | 1 | 282 | 1 | 267 | 5.64e-149 | 417 |
| Msa0880380 | MtrunA17_Chr8g0386401 | 97.087 | 206 | 5 | 1 | 78 | 283 | 1 | 205 | 9.23e-147 | 409 |
| Msa0880380 | MtrunA17_Chr8g0386391 | 96.970 | 66 | 2 | 0 | 1 | 66 | 1 | 66 | 3.68e-39 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880380 | AT4G20330.1 | 66.312 | 282 | 92 | 2 | 1 | 282 | 1 | 279 | 9.74e-124 | 355 |
| Msa0880380 | AT4G21010.1 | 58.363 | 281 | 109 | 5 | 1 | 280 | 1 | 274 | 2.92e-96 | 285 |
Find 79 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTGCAGTGTGAATTTA+AGG | 0.122923 | 6_1:+26933638 | None:intergenic |
| TGCCCGTCGTATTCTACTTT+TGG | 0.214350 | 6_1:+26935194 | None:intergenic |
| TCCACCTTAATGTTTGCTTT+GGG | 0.248514 | 6_1:+26934193 | None:intergenic |
| ATCCACCTTAATGTTTGCTT+TGG | 0.267923 | 6_1:+26934192 | None:intergenic |
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 6_1:+26936239 | None:intergenic |
| CAGGAGTTGTTGTTTACTTT+AGG | 0.277978 | 6_1:+26933936 | None:intergenic |
| TGAAAGCTGCAGGGCAGATT+TGG | 0.288630 | 6_1:-26934264 | Msa0880380:CDS |
| ATGTTTGCTTTGGGGTCATT+CGG | 0.320738 | 6_1:+26934202 | None:intergenic |
| CTCTTTGCAGTGTTGGTAGC+AGG | 0.337273 | 6_1:+26934082 | None:intergenic |
| TCCCTTGCAGTGAGCTAATC+AGG | 0.340539 | 6_1:+26933917 | None:intergenic |
| CATGCTTCATTTATTTGCTC+TGG | 0.343949 | 6_1:+26935269 | None:intergenic |
| AACACACTCCTGATAGTTTC+AGG | 0.345135 | 6_1:+26933673 | None:intergenic |
| CAATGTGATGGAAGACTTGC+AGG | 0.356725 | 6_1:-26934965 | Msa0880380:intron |
| ATTGGTCAGCTTGGTTCTCT+TGG | 0.364216 | 6_1:+26933985 | None:intergenic |
| CGCTTCATCTGAGCACCAAC+GGG | 0.368774 | 6_1:+26936122 | None:intergenic |
| CATTGGGGTAAGCATCCTTT+AGG | 0.372124 | 6_1:+26934983 | None:intergenic |
| CTTAGACTTGGACTTGGACT+TGG | 0.379977 | 6_1:+26934021 | None:intergenic |
| TGTTTGCTTTGGGGTCATTC+GGG | 0.391698 | 6_1:+26934203 | None:intergenic |
| TGCAAGTCTTCCATCACATT+GGG | 0.401716 | 6_1:+26934967 | None:intergenic |
| GCTGACCAATTCCCATCTTC+CGG | 0.404549 | 6_1:-26933972 | Msa0880380:CDS |
| TGACCCCAAAGCAAACATTA+AGG | 0.415737 | 6_1:-26934197 | Msa0880380:CDS |
| TTGTAGGCTTTGAAAGCTGC+AGG | 0.415846 | 6_1:-26934274 | Msa0880380:intron |
| ATGACCTAAAGCAGCTGTTT+CGG | 0.418120 | 6_1:-26934168 | Msa0880380:CDS |
| GAGAAGGATCTTCAAAAGAA+TGG | 0.418846 | 6_1:-26934112 | Msa0880380:CDS |
| ATAGGCAAAGTATGGTCTTA+AGG | 0.421161 | 6_1:-26935064 | Msa0880380:intron |
| AAGCTCCGGAAGATGGGAAT+TGG | 0.433158 | 6_1:+26933967 | None:intergenic |
| CTTGGACTTGGACTTGGACT+TGG | 0.442430 | 6_1:+26934027 | None:intergenic |
| TACTCCGAAACAGCTGCTTT+AGG | 0.444378 | 6_1:+26934164 | None:intergenic |
| GAAACTATCAGGAGTGTGTT+TGG | 0.445326 | 6_1:-26933670 | Msa0880380:three_prime_UTR |
| AGCATTGCGTCGAGCAAAGT+TGG | 0.452004 | 6_1:-26936272 | Msa0880380:CDS |
| AGTCCTCCTCTTTGCAGTGT+TGG | 0.455410 | 6_1:+26934075 | None:intergenic |
| GATTTCATTCTTCTTAGACT+TGG | 0.459783 | 6_1:+26934009 | None:intergenic |
| TTAGCTTAAGCTAGATCAGC+AGG | 0.464163 | 6_1:-26933869 | Msa0880380:three_prime_UTR |
| CCACCTTAATGTTTGCTTTG+GGG | 0.471247 | 6_1:+26934194 | None:intergenic |
| TCAGTGGATCTGCTGGTCAC+TGG | 0.473850 | 6_1:+26936592 | None:intergenic |
| CGGTTACTCAGTGGATCTGC+TGG | 0.487745 | 6_1:+26936585 | None:intergenic |
| GCTGTCCAACTTTGATTCAC+AGG | 0.488075 | 6_1:-26934239 | Msa0880380:CDS |
| AGGACTGCAGCACAAATTGA+TGG | 0.492183 | 6_1:-26934058 | Msa0880380:CDS |
| ACATCAAGGGTGTAAGCAAA+TGG | 0.493627 | 6_1:-26933781 | Msa0880380:three_prime_UTR |
| GATGCATTTGCAGCCACCAC+CGG | 0.494981 | 6_1:+26936230 | None:intergenic |
| GCTGCAAATGCATCAGCAAA+TGG | 0.504031 | 6_1:-26936221 | Msa0880380:CDS |
| AAGCATGCTATGTTGATATG+AGG | 0.505702 | 6_1:-26935253 | Msa0880380:CDS |
| GTCGTCCTGTGAATCAAAGT+TGG | 0.513690 | 6_1:+26934234 | None:intergenic |
| ATTCTTCTTAGACTTGGACT+TGG | 0.515148 | 6_1:+26934015 | None:intergenic |
| CTGCAAGTCTTCCATCACAT+TGG | 0.523283 | 6_1:+26934966 | None:intergenic |
| CTCTGCAAGAGCAACTAGAT+AGG | 0.523289 | 6_1:-26936334 | Msa0880380:CDS |
| AAGTAGAATACGACGGGCAA+CGG | 0.531226 | 6_1:-26935190 | Msa0880380:CDS |
| CGGGCAACGGTTCTCTTACA+AGG | 0.541030 | 6_1:-26935177 | Msa0880380:intron |
| AAGATGGGAATTGGTCAGCT+TGG | 0.557060 | 6_1:+26933976 | None:intergenic |
| TGTTATTGATCTATTGCTTG+AGG | 0.558507 | 6_1:-26936099 | Msa0880380:intron |
| ACCCAAAAGTAGAATACGAC+GGG | 0.561755 | 6_1:-26935196 | Msa0880380:CDS |
| GGATGCTTACCCCAATGTGA+TGG | 0.574607 | 6_1:-26934977 | Msa0880380:CDS |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 6_1:-26936243 | Msa0880380:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 6_1:-26936249 | Msa0880380:CDS |
| ACGCTTCATCTGAGCACCAA+CGG | 0.595575 | 6_1:+26936121 | None:intergenic |
| TCTGCTGGTCACTGGCTGTG+TGG | 0.600374 | 6_1:+26936600 | None:intergenic |
| AGCTTCTTCAACTTATACGT+AGG | 0.600973 | 6_1:-26935032 | Msa0880380:CDS |
| TCCTGATTAGCTCACTGCAA+GGG | 0.613343 | 6_1:-26933918 | Msa0880380:three_prime_UTR |
| GGTGTAAGCAAATGGTGGAC+TGG | 0.615267 | 6_1:-26933773 | Msa0880380:three_prime_UTR |
| TGATATGATTGATATAGAGA+AGG | 0.617718 | 6_1:-26934128 | Msa0880380:CDS |
| CTCCTGATTAGCTCACTGCA+AGG | 0.620794 | 6_1:-26933919 | Msa0880380:three_prime_UTR |
| CCCCAAAGCAAACATTAAGG+TGG | 0.623815 | 6_1:-26934194 | Msa0880380:CDS |
| AATTCTCAAGTGACACTGAG+AGG | 0.626331 | 6_1:-26936175 | Msa0880380:CDS |
| AGCATGCTATGTTGATATGA+GGG | 0.636991 | 6_1:-26935252 | Msa0880380:CDS |
| GGCACCTTTCGGTTACTCAG+TGG | 0.639375 | 6_1:+26936576 | None:intergenic |
| TGTAGGCTTTGAAAGCTGCA+GGG | 0.643501 | 6_1:-26934273 | Msa0880380:intron |
| TGGCTGTGTGCAATCAATGA+CGG | 0.655075 | 6_1:+26936620 | None:intergenic |
| CTACCAACACTGCAAAGAGG+AGG | 0.656479 | 6_1:-26934078 | Msa0880380:CDS |
| TCAAGGGTGTAAGCAAATGG+TGG | 0.658420 | 6_1:-26933778 | Msa0880380:three_prime_UTR |
| CTGCTACCAACACTGCAAAG+AGG | 0.665956 | 6_1:-26934081 | Msa0880380:CDS |
| GCTTCATCTGAGCACCAACG+GGG | 0.666699 | 6_1:+26936123 | None:intergenic |
| ACTTATACGTAGGTATCCAG+AGG | 0.677982 | 6_1:-26935022 | Msa0880380:CDS |
| AGATCCACTGAGTAACCGAA+AGG | 0.686502 | 6_1:-26936580 | Msa0880380:intron |
| CTTATACGTAGGTATCCAGA+GGG | 0.688413 | 6_1:-26935021 | Msa0880380:CDS |
| AACCCAAAAGTAGAATACGA+CGG | 0.689064 | 6_1:-26935197 | Msa0880380:CDS |
| GCAAGTCTTCCATCACATTG+GGG | 0.693489 | 6_1:+26934968 | None:intergenic |
| CTTCATCTGAGCACCAACGG+GGG | 0.696908 | 6_1:+26936124 | None:intergenic |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 6_1:-26936246 | Msa0880380:CDS |
| TCTATATCAATCATATCACG+AGG | 0.742182 | 6_1:+26934133 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACCTTAATTTATAATAA+TGG | + | chr6_1:26935631-26935650 | None:intergenic | 10.0% |
| !! | GAAAAATAAAATATTAAACA+AGG | + | chr6_1:26936590-26936609 | None:intergenic | 10.0% |
| !!! | TTTTAGAGGATTTTTAAAAA+AGG | + | chr6_1:26933805-26933824 | None:intergenic | 15.0% |
| !! | TTAATTTATAATAATGGCAA+CGG | + | chr6_1:26935625-26935644 | None:intergenic | 15.0% |
| !! | AATAAACAAAACAAATGAAT+AGG | + | chr6_1:26935761-26935780 | None:intergenic | 15.0% |
| !! | AAAAACAAATATCAAAAGTA+GGG | + | chr6_1:26936475-26936494 | None:intergenic | 15.0% |
| !! | TAAAAACAAATATCAAAAGT+AGG | + | chr6_1:26936476-26936495 | None:intergenic | 15.0% |
| !!! | TTTTTAGTTTTTATACATCA+AGG | - | chr6_1:26936490-26936509 | Msa0880380:intron | 15.0% |
| !!! | TTTTAGTTTTTATACATCAA+GGG | - | chr6_1:26936491-26936510 | Msa0880380:intron | 15.0% |
| !! | GATGTGAAAATAAAAAGTAA+CGG | + | chr6_1:26933761-26933780 | None:intergenic | 20.0% |
| !!! | TTTTTAAAAAAGGAATGGTT+AGG | + | chr6_1:26933795-26933814 | None:intergenic | 20.0% |
| !!! | TAAAAATCCTCTAAAAACTT+AGG | - | chr6_1:26933809-26933828 | Msa0880380:three_prime_UTR | 20.0% |
| !!! | AAAAATCCTCTAAAAACTTA+GGG | - | chr6_1:26933810-26933829 | Msa0880380:three_prime_UTR | 20.0% |
| !!! | TTCAATTCAATTTTGTTGTT+TGG | - | chr6_1:26934227-26934246 | Msa0880380:CDS | 20.0% |
| !!! | TTGTTTGGTTTTTCATTTAT+TGG | - | chr6_1:26934242-26934261 | Msa0880380:CDS | 20.0% |
| !!! | TATTAGTTTCAATTTGCAAT+TGG | + | chr6_1:26934420-26934439 | None:intergenic | 20.0% |
| !! | CAAATTGAAACTAATATGTT+TGG | - | chr6_1:26934424-26934443 | Msa0880380:intron | 20.0% |
| !! | ATTAAGTTCTCAATATGTTA+GGG | + | chr6_1:26934565-26934584 | None:intergenic | 20.0% |
| !! | AATTAAGTTCTCAATATGTT+AGG | + | chr6_1:26934566-26934585 | None:intergenic | 20.0% |
| !! | ACTTAAATAGATGTCATAAA+GGG | - | chr6_1:26934644-26934663 | Msa0880380:intron | 20.0% |
| !!! | GTTATTTGTTTTTTGTCTAT+AGG | - | chr6_1:26935203-26935222 | Msa0880380:CDS | 20.0% |
| !!! | AAGAAGATCAAATGTTTTAT+GGG | - | chr6_1:26935524-26935543 | Msa0880380:intron | 20.0% |
| !! | GTTGCCATTATTATAAATTA+AGG | - | chr6_1:26935624-26935643 | Msa0880380:intron | 20.0% |
| !! | ATAAATTAAGGTTAATACTG+AGG | - | chr6_1:26935636-26935655 | Msa0880380:intron | 20.0% |
| !! | TTAATGTTTGTCTTGAAATA+TGG | - | chr6_1:26935858-26935877 | Msa0880380:intron | 20.0% |
| !! | CTACAAAAAGATATCATTAT+GGG | + | chr6_1:26935997-26936016 | None:intergenic | 20.0% |
| !!! | GAGGATTTTTAAAAAAGGAA+TGG | + | chr6_1:26933800-26933819 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTTGGTGAAAAA+TGG | - | chr6_1:26933928-26933947 | Msa0880380:three_prime_UTR | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | - | chr6_1:26934082-26934101 | Msa0880380:CDS | 25.0% |
| ! | TTTCATTTATTGGAAGTTTC+TGG | - | chr6_1:26934252-26934271 | Msa0880380:CDS | 25.0% |
| ! | GACTTAAATAGATGTCATAA+AGG | - | chr6_1:26934643-26934662 | Msa0880380:intron | 25.0% |
| ! | TACATATCACTTATGTAGAA+TGG | - | chr6_1:26934705-26934724 | Msa0880380:intron | 25.0% |
| ! | ATACTCTTAATCAATGTTCA+CGG | + | chr6_1:26934758-26934777 | None:intergenic | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | + | chr6_1:26935181-26935200 | None:intergenic | 25.0% |
| ! | ACATTTGATCTTCTTCAAAA+GGG | + | chr6_1:26935519-26935538 | None:intergenic | 25.0% |
| ! | AACATTTGATCTTCTTCAAA+AGG | + | chr6_1:26935520-26935539 | None:intergenic | 25.0% |
| !! | GAAGAAGATCAAATGTTTTA+TGG | - | chr6_1:26935523-26935542 | Msa0880380:intron | 25.0% |
| ! | ATAATAACATTGCACATTAG+TGG | - | chr6_1:26935551-26935570 | Msa0880380:intron | 25.0% |
| ! | TAATAACATTGCACATTAGT+GGG | - | chr6_1:26935552-26935571 | Msa0880380:intron | 25.0% |
| ! | ATGGAAATAGAGATTATAGA+TGG | - | chr6_1:26935877-26935896 | Msa0880380:intron | 25.0% |
| ! | GTCAAAATCTTGTATATAGT+TGG | - | chr6_1:26935953-26935972 | Msa0880380:intron | 25.0% |
| ! | CCTACAAAAAGATATCATTA+TGG | + | chr6_1:26935998-26936017 | None:intergenic | 25.0% |
| !! | CCATAATGATATCTTTTTGT+AGG | - | chr6_1:26935995-26936014 | Msa0880380:intron | 25.0% |
| ! | TGATATGATTGATATAGAGA+AGG | - | chr6_1:26936157-26936176 | Msa0880380:CDS | 25.0% |
| !! | ACAAAACCCTAAGTTTTTAG+AGG | + | chr6_1:26933819-26933838 | None:intergenic | 30.0% |
| CATCAATGAAATTTCGAAAG+AGG | + | chr6_1:26933856-26933875 | None:intergenic | 30.0% | |
| TTGTGAACAATCCTTTATTC+AGG | - | chr6_1:26933886-26933905 | Msa0880380:three_prime_UTR | 30.0% | |
| TGTTATTGATCTATTGCTTG+AGG | - | chr6_1:26934186-26934205 | Msa0880380:CDS | 30.0% | |
| ! | CTATTGCTTGAGGTAATTTT+TGG | - | chr6_1:26934196-26934215 | Msa0880380:CDS | 30.0% |
| TAACCTCAAACTTAACAGAT+GGG | + | chr6_1:26934372-26934391 | None:intergenic | 30.0% | |
| TTAACCTCAAACTTAACAGA+TGG | + | chr6_1:26934373-26934392 | None:intergenic | 30.0% | |
| TTGAAACTAATATGTTTGGC+TGG | - | chr6_1:26934428-26934447 | Msa0880380:intron | 30.0% | |
| GTTTGCAAATTAAGCATACA+AGG | - | chr6_1:26934611-26934630 | Msa0880380:intron | 30.0% | |
| ! | AGTCATCTTCCAAGATATTT+TGG | - | chr6_1:26934824-26934843 | Msa0880380:intron | 30.0% |
| CATCAAACTCCAAAATATCT+TGG | + | chr6_1:26934836-26934855 | None:intergenic | 30.0% | |
| !!! | CAAGATATTTTGGAGTTTGA+TGG | - | chr6_1:26934834-26934853 | Msa0880380:intron | 30.0% |
| ACCAATGAAATTCCACAATT+AGG | - | chr6_1:26934926-26934945 | Msa0880380:intron | 30.0% | |
| TCCTAATTGTGGAATTTCAT+TGG | + | chr6_1:26934930-26934949 | None:intergenic | 30.0% | |
| ! | TCGTCAAAACCATATTGATT+TGG | - | chr6_1:26934956-26934975 | Msa0880380:intron | 30.0% |
| !!! | ACCATATTGATTTGGTGTTT+TGG | - | chr6_1:26934964-26934983 | Msa0880380:intron | 30.0% |
| ACCAAAACACCAAATCAATA+TGG | + | chr6_1:26934968-26934987 | None:intergenic | 30.0% | |
| ! | CTCTTACAAGGTAACTTTTA+CGG | - | chr6_1:26935120-26935139 | Msa0880380:intron | 30.0% |
| ! | TCTTACAAGGTAACTTTTAC+GGG | - | chr6_1:26935121-26935140 | Msa0880380:intron | 30.0% |
| ! | TTTTGTCTATAGGCAAAGTA+TGG | - | chr6_1:26935213-26935232 | Msa0880380:CDS | 30.0% |
| AATTCTCATTTCTCACAGAT+TGG | - | chr6_1:26935442-26935461 | Msa0880380:intron | 30.0% | |
| ! | TAAGGAGCAAGATTTTGTAA+TGG | + | chr6_1:26935685-26935704 | None:intergenic | 30.0% |
| TTACAAAATCTTGCTCCTTA+AGG | - | chr6_1:26935685-26935704 | Msa0880380:intron | 30.0% | |
| AGATTATAGATGGAACTATC+AGG | - | chr6_1:26935887-26935906 | Msa0880380:intron | 30.0% | |
| !!! | TAGTTGGCTTTTCAATGAAT+AGG | - | chr6_1:26935969-26935988 | Msa0880380:intron | 30.0% |
| TCTATATCAATCATATCACG+AGG | + | chr6_1:26936155-26936174 | None:intergenic | 30.0% | |
| GATTTCATTCTTCTTAGACT+TGG | + | chr6_1:26936279-26936298 | None:intergenic | 30.0% | |
| TGAAAACATGGCGTTGTTAA+CGG | + | chr6_1:26933733-26933752 | None:intergenic | 35.0% | |
| ! | GTAACGGAAGATTGAAAACA+TGG | + | chr6_1:26933745-26933764 | None:intergenic | 35.0% |
| GAACAACTTCACCTGAATAA+AGG | + | chr6_1:26933900-26933919 | None:intergenic | 35.0% | |
| TAGCAGAAAACCTAATACTC+CGG | - | chr6_1:26934036-26934055 | Msa0880380:CDS | 35.0% | |
| ! | CATTTATTGGAAGTTTCTGG+TGG | - | chr6_1:26934255-26934274 | Msa0880380:CDS | 35.0% |
| AGTTCTCAATATGTTAGGGT+GGG | + | chr6_1:26934561-26934580 | None:intergenic | 35.0% | |
| AAGTTCTCAATATGTTAGGG+TGG | + | chr6_1:26934562-26934581 | None:intergenic | 35.0% | |
| CAAATTAAGCATACAAGGTC+AGG | - | chr6_1:26934616-26934635 | Msa0880380:intron | 35.0% | |
| ATCACTTATGTAGAATGGTG+TGG | - | chr6_1:26934710-26934729 | Msa0880380:intron | 35.0% | |
| ATGCATCTTGTAGATCGTTA+TGG | + | chr6_1:26934787-26934806 | None:intergenic | 35.0% | |
| TAACGATCTACAAGATGCAT+AGG | - | chr6_1:26934787-26934806 | Msa0880380:intron | 35.0% | |
| ! | GAGTTTGATGGATGTTATGT+TGG | - | chr6_1:26934846-26934865 | Msa0880380:intron | 35.0% |
| GTAAGCTATCTTAAGTAGCA+TGG | + | chr6_1:26934908-26934927 | None:intergenic | 35.0% | |
| GACGAATCAATTCCTAATTG+TGG | + | chr6_1:26934941-26934960 | None:intergenic | 35.0% | |
| CATGCTTCATTTATTTGCTC+TGG | + | chr6_1:26935019-26935038 | None:intergenic | 35.0% | |
| AAGCATGCTATGTTGATATG+AGG | - | chr6_1:26935032-26935051 | Msa0880380:CDS | 35.0% | |
| AGCATGCTATGTTGATATGA+GGG | - | chr6_1:26935033-26935052 | Msa0880380:CDS | 35.0% | |
| !! | AAGATGTTTTTGAGAGTCTG+AGG | - | chr6_1:26935062-26935081 | Msa0880380:CDS | 35.0% |
| AACCCAAAAGTAGAATACGA+CGG | - | chr6_1:26935088-26935107 | Msa0880380:intron | 35.0% | |
| ! | ATAGGCAAAGTATGGTCTTA+AGG | - | chr6_1:26935221-26935240 | Msa0880380:CDS | 35.0% |
| AGCTTCTTCAACTTATACGT+AGG | - | chr6_1:26935253-26935272 | Msa0880380:CDS | 35.0% | |
| AGGTAGAATGACTTCTGTTA+GGG | - | chr6_1:26935340-26935359 | Msa0880380:intron | 35.0% | |
| ACATTTCTTACAGCACCTTA+AGG | + | chr6_1:26935703-26935722 | None:intergenic | 35.0% | |
| !! | TTAAGGTGCTGTAAGAAATG+TGG | - | chr6_1:26935702-26935721 | Msa0880380:intron | 35.0% |
| GAATAGGAAGTGAATGAACA+AGG | + | chr6_1:26935745-26935764 | None:intergenic | 35.0% | |
| CATGTAAACGTCAATGAGAA+TGG | + | chr6_1:26935807-26935826 | None:intergenic | 35.0% | |
| TACATGATACCGAGACATTA+AGG | - | chr6_1:26935821-26935840 | Msa0880380:intron | 35.0% | |
| ACATGATACCGAGACATTAA+GGG | - | chr6_1:26935822-26935841 | Msa0880380:intron | 35.0% | |
| AAAAACATCACCTATCACCA+AGG | + | chr6_1:26935920-26935939 | None:intergenic | 35.0% | |
| TCCACCTTAATGTTTGCTTT+GGG | + | chr6_1:26936095-26936114 | None:intergenic | 35.0% | |
| ATCCACCTTAATGTTTGCTT+TGG | + | chr6_1:26936096-26936115 | None:intergenic | 35.0% | |
| GAGAAGGATCTTCAAAAGAA+TGG | - | chr6_1:26936173-26936192 | Msa0880380:CDS | 35.0% | |
| ATTCTTCTTAGACTTGGACT+TGG | + | chr6_1:26936273-26936292 | None:intergenic | 35.0% | |
| !! | TTTAGGTTCTGAAAAAGCTC+CGG | + | chr6_1:26936335-26936354 | None:intergenic | 35.0% |
| !! | CAGGAGTTGTTGTTTACTTT+AGG | + | chr6_1:26936352-26936371 | None:intergenic | 35.0% |
| ! | CAGCAGGTTGAAAAATATTC+AGG | - | chr6_1:26936432-26936451 | Msa0880380:intron | 35.0% |
| ! | CAGGTTGAAAAATATTCAGG+AGG | - | chr6_1:26936435-26936454 | Msa0880380:intron | 35.0% |
| TGTCTTGCAGTGTGAATTTA+AGG | + | chr6_1:26936650-26936669 | None:intergenic | 35.0% | |
| !!! | TCGTGCGACTTTCAAGTTTT+TGG | - | chr6_1:26933918-26933937 | Msa0880380:three_prime_UTR | 40.0% |
| AATTCTCAAGTGACACTGAG+AGG | - | chr6_1:26934110-26934129 | Msa0880380:CDS | 40.0% | |
| ! | TTAACAGATGGGCTTCTCAA+AGG | + | chr6_1:26934361-26934380 | None:intergenic | 40.0% |
| AAGCCCATCTGTTAAGTTTG+AGG | - | chr6_1:26934366-26934385 | Msa0880380:intron | 40.0% | |
| TGAGTTTGGCTAAATCACTG+TGG | - | chr6_1:26934455-26934474 | Msa0880380:intron | 40.0% | |
| GAGTTTGGCTAAATCACTGT+GGG | - | chr6_1:26934456-26934475 | Msa0880380:intron | 40.0% | |
| AGTTTGGCTAAATCACTGTG+GGG | - | chr6_1:26934457-26934476 | Msa0880380:intron | 40.0% | |
| GTGATATGTAAACGAACCTG+TGG | + | chr6_1:26934695-26934714 | None:intergenic | 40.0% | |
| ACCCAAAAGTAGAATACGAC+GGG | - | chr6_1:26935089-26935108 | Msa0880380:intron | 40.0% | |
| ACTTATACGTAGGTATCCAG+AGG | - | chr6_1:26935263-26935282 | Msa0880380:CDS | 40.0% | |
| CTTATACGTAGGTATCCAGA+GGG | - | chr6_1:26935264-26935283 | Msa0880380:CDS | 40.0% | |
| CCTTTAGGTCAAAAACAGCA+AGG | + | chr6_1:26935290-26935309 | None:intergenic | 40.0% | |
| !!! | CCTTGCTGTTTTTGACCTAA+AGG | - | chr6_1:26935287-26935306 | Msa0880380:CDS | 40.0% |
| TGCAAGTCTTCCATCACATT+GGG | + | chr6_1:26935321-26935340 | None:intergenic | 40.0% | |
| CAGGTAGAATGACTTCTGTT+AGG | - | chr6_1:26935339-26935358 | Msa0880380:intron | 40.0% | |
| GAAAAAACGTCGTCAGGAAA+TGG | + | chr6_1:26935387-26935406 | None:intergenic | 40.0% | |
| AATGAACAAGGTAGCAGGAA+AGG | + | chr6_1:26935733-26935752 | None:intergenic | 40.0% | |
| AAGTGAATGAACAAGGTAGC+AGG | + | chr6_1:26935738-26935757 | None:intergenic | 40.0% | |
| TGAGAATGGAAGCAAAGAGA+AGG | + | chr6_1:26935793-26935812 | None:intergenic | 40.0% | |
| TCACTCTTCCCTTAATGTCT+CGG | + | chr6_1:26935833-26935852 | None:intergenic | 40.0% | |
| AACTATCAGGTCATATGCCT+TGG | - | chr6_1:26935900-26935919 | Msa0880380:intron | 40.0% | |
| !! | ATGTTTGCTTTGGGGTCATT+CGG | + | chr6_1:26936086-26936105 | None:intergenic | 40.0% |
| TGACCCCAAAGCAAACATTA+AGG | - | chr6_1:26936088-26936107 | Msa0880380:intron | 40.0% | |
| CCACCTTAATGTTTGCTTTG+GGG | + | chr6_1:26936094-26936113 | None:intergenic | 40.0% | |
| ATGACCTAAAGCAGCTGTTT+CGG | - | chr6_1:26936117-26936136 | Msa0880380:CDS | 40.0% | |
| TTAGCTTAAGCTAGATCAGC+AGG | - | chr6_1:26936416-26936435 | Msa0880380:intron | 40.0% | |
| ! | ACATCAAGGGTGTAAGCAAA+TGG | - | chr6_1:26936504-26936523 | Msa0880380:intron | 40.0% |
| !! | TTTTTCGGCCTGAAACTATC+AGG | - | chr6_1:26936604-26936623 | Msa0880380:five_prime_UTR | 40.0% |
| AACACACTCCTGATAGTTTC+AGG | + | chr6_1:26936615-26936634 | None:intergenic | 40.0% | |
| ! | GAAACTATCAGGAGTGTGTT+TGG | - | chr6_1:26936615-26936634 | Msa0880380:five_prime_UTR | 40.0% |
| TGGCTGTGTGCAATCAATGA+CGG | + | chr6_1:26933668-26933687 | None:intergenic | 45.0% | |
| AGATCCACTGAGTAACCGAA+AGG | - | chr6_1:26933705-26933724 | Msa0880380:three_prime_UTR | 45.0% | |
| CTCTGCAAGAGCAACTAGAT+AGG | - | chr6_1:26933951-26933970 | Msa0880380:CDS | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | - | chr6_1:26934039-26934058 | Msa0880380:CDS | 45.0% | |
| AAAACCTAATACTCCGGTGG+TGG | - | chr6_1:26934042-26934061 | Msa0880380:CDS | 45.0% | |
| GCTGCAAATGCATCAGCAAA+TGG | - | chr6_1:26934064-26934083 | Msa0880380:CDS | 45.0% | |
| AATATACGTAAAGCCCCCGT+TGG | - | chr6_1:26934148-26934167 | Msa0880380:CDS | 45.0% | |
| TGATTTCGATGCATGAGACG+AGG | - | chr6_1:26934289-26934308 | Msa0880380:intron | 45.0% | |
| GATTTCGATGCATGAGACGA+GGG | - | chr6_1:26934290-26934309 | Msa0880380:intron | 45.0% | |
| TCTCAATATGTTAGGGTGGG+CGG | + | chr6_1:26934558-26934577 | None:intergenic | 45.0% | |
| TATGTAAACGAACCTGTGGC+AGG | + | chr6_1:26934691-26934710 | None:intergenic | 45.0% | |
| !! | GCCCGTCGTATTCTACTTTT+GGG | + | chr6_1:26935093-26935112 | None:intergenic | 45.0% |
| ! | TGCCCGTCGTATTCTACTTT+TGG | + | chr6_1:26935094-26935113 | None:intergenic | 45.0% |
| AAGTAGAATACGACGGGCAA+CGG | - | chr6_1:26935095-26935114 | Msa0880380:intron | 45.0% | |
| CATTGGGGTAAGCATCCTTT+AGG | + | chr6_1:26935305-26935324 | None:intergenic | 45.0% | |
| GCAAGTCTTCCATCACATTG+GGG | + | chr6_1:26935320-26935339 | None:intergenic | 45.0% | |
| CTGCAAGTCTTCCATCACAT+TGG | + | chr6_1:26935322-26935341 | None:intergenic | 45.0% | |
| ! | CAATGTGATGGAAGACTTGC+AGG | - | chr6_1:26935320-26935339 | Msa0880380:intron | 45.0% |
| GCTACTGAAAAAACGTCGTC+AGG | + | chr6_1:26935393-26935412 | None:intergenic | 45.0% | |
| !!! | CGACGTTTTTTCAGTAGCAG+TGG | - | chr6_1:26935395-26935414 | Msa0880380:intron | 45.0% |
| !!! | TTCCACTTTTTCCCAACCCT+TGG | - | chr6_1:26935591-26935610 | Msa0880380:intron | 45.0% |
| !! | CGGTTTTAATGCCAAGGGTT+GGG | + | chr6_1:26935605-26935624 | None:intergenic | 45.0% |
| !! | ACGGTTTTAATGCCAAGGGT+TGG | + | chr6_1:26935606-26935625 | None:intergenic | 45.0% |
| !! | GGCAACGGTTTTAATGCCAA+GGG | + | chr6_1:26935610-26935629 | None:intergenic | 45.0% |
| !! | TGGCAACGGTTTTAATGCCA+AGG | + | chr6_1:26935611-26935630 | None:intergenic | 45.0% |
| ! | AGGTCATATGCCTTGGTGAT+AGG | - | chr6_1:26935907-26935926 | Msa0880380:intron | 45.0% |
| !! | TTGTAGGCTTTGAAAGCTGC+AGG | - | chr6_1:26936011-26936030 | Msa0880380:intron | 45.0% |
| !! | TGTAGGCTTTGAAAGCTGCA+GGG | - | chr6_1:26936012-26936031 | Msa0880380:intron | 45.0% |
| GCTGTCCAACTTTGATTCAC+AGG | - | chr6_1:26936046-26936065 | Msa0880380:intron | 45.0% | |
| GTCGTCCTGTGAATCAAAGT+TGG | + | chr6_1:26936054-26936073 | None:intergenic | 45.0% | |
| !! | TGTTTGCTTTGGGGTCATTC+GGG | + | chr6_1:26936085-26936104 | None:intergenic | 45.0% |
| CCCCAAAGCAAACATTAAGG+TGG | - | chr6_1:26936091-26936110 | Msa0880380:intron | 45.0% | |
| ! | TACTCCGAAACAGCTGCTTT+AGG | + | chr6_1:26936124-26936143 | None:intergenic | 45.0% |
| AGGACTGCAGCACAAATTGA+TGG | - | chr6_1:26936227-26936246 | Msa0880380:CDS | 45.0% | |
| CTTAGACTTGGACTTGGACT+TGG | + | chr6_1:26936267-26936286 | None:intergenic | 45.0% | |
| ! | ATTGGTCAGCTTGGTTCTCT+TGG | + | chr6_1:26936303-26936322 | None:intergenic | 45.0% |
| AAGATGGGAATTGGTCAGCT+TGG | + | chr6_1:26936312-26936331 | None:intergenic | 45.0% | |
| CTGAAAAAGCTCCGGAAGAT+GGG | + | chr6_1:26936327-26936346 | None:intergenic | 45.0% | |
| TCTGAAAAAGCTCCGGAAGA+TGG | + | chr6_1:26936328-26936347 | None:intergenic | 45.0% | |
| ! | TCCTGATTAGCTCACTGCAA+GGG | - | chr6_1:26936367-26936386 | Msa0880380:five_prime_UTR | 45.0% |
| ! | TCAAGGGTGTAAGCAAATGG+TGG | - | chr6_1:26936507-26936526 | Msa0880380:intron | 45.0% |
| !!! | TTGTTTAATATTTTATTTTT+CGG | - | chr6_1:26936589-26936608 | Msa0880380:five_prime_UTR | 5.0% |
| GCGTTGTTAACGGCACCTTT+CGG | + | chr6_1:26933723-26933742 | None:intergenic | 50.0% | |
| AGCATTGCGTCGAGCAAAGT+TGG | - | chr6_1:26934013-26934032 | Msa0880380:CDS | 50.0% | |
| ACGCTTCATCTGAGCACCAA+CGG | + | chr6_1:26934167-26934186 | None:intergenic | 50.0% | |
| GTTTGGCTGGACACTGAGTT+TGG | - | chr6_1:26934441-26934460 | Msa0880380:intron | 50.0% | |
| TCAAATCCCAATCCTGCCAC+AGG | - | chr6_1:26934676-26934695 | Msa0880380:intron | 50.0% | |
| AACGAACCTGTGGCAGGATT+GGG | + | chr6_1:26934685-26934704 | None:intergenic | 50.0% | |
| AAACGAACCTGTGGCAGGAT+TGG | + | chr6_1:26934686-26934705 | None:intergenic | 50.0% | |
| TCAAAAACAGCAAGGCCCTC+TGG | + | chr6_1:26935282-26935301 | None:intergenic | 50.0% | |
| GGATGCTTACCCCAATGTGA+TGG | - | chr6_1:26935308-26935327 | Msa0880380:intron | 50.0% | |
| TGCCAAGGGTTGGGAAAAAG+TGG | + | chr6_1:26935596-26935615 | None:intergenic | 50.0% | |
| TGAAAGCTGCAGGGCAGATT+TGG | - | chr6_1:26936021-26936040 | Msa0880380:intron | 50.0% | |
| !! | CTCTTTGCAGTGTTGGTAGC+AGG | + | chr6_1:26936206-26936225 | None:intergenic | 50.0% |
| CTGCTACCAACACTGCAAAG+AGG | - | chr6_1:26936204-26936223 | Msa0880380:CDS | 50.0% | |
| CTACCAACACTGCAAAGAGG+AGG | - | chr6_1:26936207-26936226 | Msa0880380:CDS | 50.0% | |
| AGTCCTCCTCTTTGCAGTGT+TGG | + | chr6_1:26936213-26936232 | None:intergenic | 50.0% | |
| CTTGGACTTGGACTTGGACT+TGG | + | chr6_1:26936261-26936280 | None:intergenic | 50.0% | |
| GCTGACCAATTCCCATCTTC+CGG | - | chr6_1:26936313-26936332 | Msa0880380:CDS | 50.0% | |
| AAGCTCCGGAAGATGGGAAT+TGG | + | chr6_1:26936321-26936340 | None:intergenic | 50.0% | |
| ! | CTCCTGATTAGCTCACTGCA+AGG | - | chr6_1:26936366-26936385 | Msa0880380:five_prime_UTR | 50.0% |
| TCCCTTGCAGTGAGCTAATC+AGG | + | chr6_1:26936371-26936390 | None:intergenic | 50.0% | |
| !! | GGTGTAAGCAAATGGTGGAC+TGG | - | chr6_1:26936512-26936531 | Msa0880380:intron | 50.0% |
| TCAGTGGATCTGCTGGTCAC+TGG | + | chr6_1:26933696-26933715 | None:intergenic | 55.0% | |
| CGGTTACTCAGTGGATCTGC+TGG | + | chr6_1:26933703-26933722 | None:intergenic | 55.0% | |
| GGCACCTTTCGGTTACTCAG+TGG | + | chr6_1:26933712-26933731 | None:intergenic | 55.0% | |
| GATGCATTTGCAGCCACCAC+CGG | + | chr6_1:26934058-26934077 | None:intergenic | 55.0% | |
| CTTCATCTGAGCACCAACGG+GGG | + | chr6_1:26934164-26934183 | None:intergenic | 55.0% | |
| GCTTCATCTGAGCACCAACG+GGG | + | chr6_1:26934165-26934184 | None:intergenic | 55.0% | |
| CGCTTCATCTGAGCACCAAC+GGG | + | chr6_1:26934166-26934185 | None:intergenic | 55.0% | |
| CGGGCAACGGTTCTCTTACA+AGG | - | chr6_1:26935108-26935127 | Msa0880380:intron | 55.0% | |
| ! | TCTGCTGGTCACTGGCTGTG+TGG | + | chr6_1:26933688-26933707 | None:intergenic | 60.0% |
| ! | GCAGCCACCACCGGAGTATT+AGG | + | chr6_1:26934049-26934068 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 26933622 | 26936685 | 26933622 | ID=Msa0880380;Name=Msa0880380 |
| chr6_1 | mRNA | 26933622 | 26936685 | 26933622 | ID=Msa0880380-mRNA-1;Parent=Msa0880380;Name=Msa0880380-mRNA-1;_AED=0.20;_eAED=0.20;_QI=144|1|1|1|0.75|0.6|5|327|283 |
| chr6_1 | exon | 26933622 | 26934290 | 26933622 | ID=Msa0880380-mRNA-1:exon:6585;Parent=Msa0880380-mRNA-1 |
| chr6_1 | exon | 26934966 | 26935082 | 26934966 | ID=Msa0880380-mRNA-1:exon:6584;Parent=Msa0880380-mRNA-1 |
| chr6_1 | exon | 26935178 | 26935309 | 26935178 | ID=Msa0880380-mRNA-1:exon:6583;Parent=Msa0880380-mRNA-1 |
| chr6_1 | exon | 26936100 | 26936399 | 26936100 | ID=Msa0880380-mRNA-1:exon:6582;Parent=Msa0880380-mRNA-1 |
| chr6_1 | exon | 26936581 | 26936685 | 26936581 | ID=Msa0880380-mRNA-1:exon:6581;Parent=Msa0880380-mRNA-1 |
| chr6_1 | five_prime_UTR | 26936581 | 26936685 | 26936581 | ID=Msa0880380-mRNA-1:five_prime_utr;Parent=Msa0880380-mRNA-1 |
| chr6_1 | five_prime_UTR | 26936361 | 26936399 | 26936361 | ID=Msa0880380-mRNA-1:five_prime_utr;Parent=Msa0880380-mRNA-1 |
| chr6_1 | CDS | 26936100 | 26936360 | 26936100 | ID=Msa0880380-mRNA-1:cds;Parent=Msa0880380-mRNA-1 |
| chr6_1 | CDS | 26935178 | 26935309 | 26935178 | ID=Msa0880380-mRNA-1:cds;Parent=Msa0880380-mRNA-1 |
| chr6_1 | CDS | 26934966 | 26935082 | 26934966 | ID=Msa0880380-mRNA-1:cds;Parent=Msa0880380-mRNA-1 |
| chr6_1 | CDS | 26933949 | 26934290 | 26933949 | ID=Msa0880380-mRNA-1:cds;Parent=Msa0880380-mRNA-1 |
| chr6_1 | three_prime_UTR | 26933622 | 26933948 | 26933622 | ID=Msa0880380-mRNA-1:three_prime_utr;Parent=Msa0880380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
