Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946560 | XP_013447004.1 | 97.173 | 283 | 7 | 1 | 1 | 283 | 1 | 282 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946560 | sp|Q54KJ8|T2EB_DICDI | 27.574 | 272 | 173 | 9 | 10 | 275 | 6 | 259 | 2.69e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0571210 | Msa0946560 | 0.876367 | 1.477766e-68 | -8.615850e-47 |
| Msa0880380 | Msa0946560 | 0.950165 | 2.892734e-108 | -8.615850e-47 |
| Msa0946560 | Msa1267790 | 0.998244 | 9.462621e-260 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946560 | MtrunA17_Chr5g0397801 | 74.113 | 282 | 58 | 2 | 1 | 282 | 1 | 267 | 5.64e-149 | 417 |
| Msa0946560 | MtrunA17_Chr8g0386401 | 97.087 | 206 | 5 | 1 | 78 | 283 | 1 | 205 | 9.23e-147 | 409 |
| Msa0946560 | MtrunA17_Chr8g0386391 | 96.970 | 66 | 2 | 0 | 1 | 66 | 1 | 66 | 3.68e-39 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946560 | AT4G20330.1 | 66.312 | 282 | 92 | 2 | 1 | 282 | 1 | 279 | 9.74e-124 | 355 |
| Msa0946560 | AT4G21010.1 | 58.363 | 281 | 109 | 5 | 1 | 280 | 1 | 274 | 2.92e-96 | 285 |
Find 79 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTGCAGTGTGAATTTA+AGG | 0.122923 | 6_3:-27962977 | None:intergenic |
| TGCCCGTCGTATTCTACTTT+TGG | 0.214350 | 6_3:-27961421 | None:intergenic |
| TCCACCTTAATGTTTGCTTT+GGG | 0.248514 | 6_3:-27962422 | None:intergenic |
| ATCCACCTTAATGTTTGCTT+TGG | 0.267923 | 6_3:-27962423 | None:intergenic |
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 6_3:-27960372 | None:intergenic |
| CAGGAGTTGTTGTTTACTTT+AGG | 0.277978 | 6_3:-27962679 | None:intergenic |
| TGAAAGCTGCAGGGCAGATT+TGG | 0.288630 | 6_3:+27962351 | Msa0946560:CDS |
| ATGTTTGCTTTGGGGTCATT+CGG | 0.320738 | 6_3:-27962413 | None:intergenic |
| CTCTTTGCAGTGTTGGTAGC+AGG | 0.337273 | 6_3:-27962533 | None:intergenic |
| TCCCTTGCAGTGAGCTAATC+AGG | 0.340539 | 6_3:-27962698 | None:intergenic |
| CATGCTTCATTTATTTGCTC+TGG | 0.343949 | 6_3:-27961346 | None:intergenic |
| AACACACTCCTGATAGTTTC+AGG | 0.345135 | 6_3:-27962942 | None:intergenic |
| CAATGTGATGGAAGACTTGC+AGG | 0.356725 | 6_3:+27961650 | Msa0946560:CDS |
| ATTGGTCAGCTTGGTTCTCT+TGG | 0.364216 | 6_3:-27962630 | None:intergenic |
| CGCTTCATCTGAGCACCAAC+GGG | 0.368774 | 6_3:-27960489 | None:intergenic |
| CATTGGGGTAAGCATCCTTT+AGG | 0.372124 | 6_3:-27961632 | None:intergenic |
| CTTAGACTTGGACTTGGACT+TGG | 0.379977 | 6_3:-27962594 | None:intergenic |
| TGTTTGCTTTGGGGTCATTC+GGG | 0.391698 | 6_3:-27962412 | None:intergenic |
| TGCAAGTCTTCCATCACATT+GGG | 0.401716 | 6_3:-27961648 | None:intergenic |
| GCTGACCAATTCCCATCTTC+CGG | 0.404549 | 6_3:+27962643 | Msa0946560:CDS |
| TGACCCCAAAGCAAACATTA+AGG | 0.415737 | 6_3:+27962418 | Msa0946560:CDS |
| TTGTAGGCTTTGAAAGCTGC+AGG | 0.415846 | 6_3:+27962341 | Msa0946560:intron |
| ATGACCTAAAGCAGCTGTTT+CGG | 0.418120 | 6_3:+27962447 | Msa0946560:CDS |
| GAGAAGGATCTTCAAAAGAA+TGG | 0.418846 | 6_3:+27962503 | Msa0946560:CDS |
| ATAGGCAAAGTATGGTCTTA+AGG | 0.421161 | 6_3:+27961551 | Msa0946560:intron |
| AAGCTCCGGAAGATGGGAAT+TGG | 0.433158 | 6_3:-27962648 | None:intergenic |
| CTTGGACTTGGACTTGGACT+TGG | 0.442430 | 6_3:-27962588 | None:intergenic |
| TACTCCGAAACAGCTGCTTT+AGG | 0.444378 | 6_3:-27962451 | None:intergenic |
| GAAACTATCAGGAGTGTGTT+TGG | 0.445326 | 6_3:+27962945 | Msa0946560:three_prime_UTR |
| AGCATTGCGTCGAGCAAAGT+TGG | 0.452004 | 6_3:+27960339 | Msa0946560:CDS |
| AGTCCTCCTCTTTGCAGTGT+TGG | 0.455410 | 6_3:-27962540 | None:intergenic |
| GATTTCATTCTTCTTAGACT+TGG | 0.459783 | 6_3:-27962606 | None:intergenic |
| TTAGCTTAAGCTAGATCAGC+AGG | 0.464163 | 6_3:+27962746 | Msa0946560:three_prime_UTR |
| CCACCTTAATGTTTGCTTTG+GGG | 0.471247 | 6_3:-27962421 | None:intergenic |
| TCAGTGGATCTGCTGGTCAC+TGG | 0.473850 | 6_3:-27960019 | None:intergenic |
| CGGTTACTCAGTGGATCTGC+TGG | 0.487745 | 6_3:-27960026 | None:intergenic |
| GCTGTCCAACTTTGATTCAC+AGG | 0.488075 | 6_3:+27962376 | Msa0946560:CDS |
| AGGACTGCAGCACAAATTGA+TGG | 0.492183 | 6_3:+27962557 | Msa0946560:CDS |
| ACATCAAGGGTGTAAGCAAA+TGG | 0.493627 | 6_3:+27962834 | Msa0946560:three_prime_UTR |
| GATGCATTTGCAGCCACCAC+CGG | 0.494981 | 6_3:-27960381 | None:intergenic |
| GCTGCAAATGCATCAGCAAA+TGG | 0.504031 | 6_3:+27960390 | Msa0946560:CDS |
| AAGCATGCTATGTTGATATG+AGG | 0.505702 | 6_3:+27961362 | Msa0946560:CDS |
| GTCGTCCTGTGAATCAAAGT+TGG | 0.513690 | 6_3:-27962381 | None:intergenic |
| ATTCTTCTTAGACTTGGACT+TGG | 0.515148 | 6_3:-27962600 | None:intergenic |
| CTGCAAGTCTTCCATCACAT+TGG | 0.523283 | 6_3:-27961649 | None:intergenic |
| CTCTGCAAGAGCAACTAGAT+AGG | 0.523289 | 6_3:+27960277 | Msa0946560:CDS |
| AAGTAGAATACGACGGGCAA+CGG | 0.531226 | 6_3:+27961425 | Msa0946560:CDS |
| CGGGCAACGGTTCTCTTACA+AGG | 0.541030 | 6_3:+27961438 | Msa0946560:CDS |
| AAGATGGGAATTGGTCAGCT+TGG | 0.557060 | 6_3:-27962639 | None:intergenic |
| TGTTATTGATCTATTGCTTG+AGG | 0.558507 | 6_3:+27960512 | Msa0946560:CDS |
| ACCCAAAAGTAGAATACGAC+GGG | 0.561755 | 6_3:+27961419 | Msa0946560:CDS |
| GGATGCTTACCCCAATGTGA+TGG | 0.574607 | 6_3:+27961638 | Msa0946560:CDS |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 6_3:+27960368 | Msa0946560:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 6_3:+27960362 | Msa0946560:CDS |
| ACGCTTCATCTGAGCACCAA+CGG | 0.595575 | 6_3:-27960490 | None:intergenic |
| TCTGCTGGTCACTGGCTGTG+TGG | 0.600374 | 6_3:-27960011 | None:intergenic |
| AGCTTCTTCAACTTATACGT+AGG | 0.600973 | 6_3:+27961583 | Msa0946560:CDS |
| TCCTGATTAGCTCACTGCAA+GGG | 0.613343 | 6_3:+27962697 | Msa0946560:three_prime_UTR |
| GGTGTAAGCAAATGGTGGAC+TGG | 0.615267 | 6_3:+27962842 | Msa0946560:three_prime_UTR |
| TGATATGATTGATATAGAGA+AGG | 0.617718 | 6_3:+27962487 | Msa0946560:CDS |
| CTCCTGATTAGCTCACTGCA+AGG | 0.620794 | 6_3:+27962696 | Msa0946560:three_prime_UTR |
| CCCCAAAGCAAACATTAAGG+TGG | 0.623815 | 6_3:+27962421 | Msa0946560:CDS |
| AATTCTCAAGTGACACTGAG+AGG | 0.626331 | 6_3:+27960436 | Msa0946560:CDS |
| AGCATGCTATGTTGATATGA+GGG | 0.636991 | 6_3:+27961363 | Msa0946560:CDS |
| GGCACCTTTCGGTTACTCAG+TGG | 0.639375 | 6_3:-27960035 | None:intergenic |
| TGTAGGCTTTGAAAGCTGCA+GGG | 0.643501 | 6_3:+27962342 | Msa0946560:intron |
| TGGCTGTGTGCAATCAATGA+CGG | 0.655075 | 6_3:-27959991 | None:intergenic |
| CTACCAACACTGCAAAGAGG+AGG | 0.656479 | 6_3:+27962537 | Msa0946560:CDS |
| TCAAGGGTGTAAGCAAATGG+TGG | 0.658420 | 6_3:+27962837 | Msa0946560:three_prime_UTR |
| CTGCTACCAACACTGCAAAG+AGG | 0.665956 | 6_3:+27962534 | Msa0946560:CDS |
| GCTTCATCTGAGCACCAACG+GGG | 0.666699 | 6_3:-27960488 | None:intergenic |
| ACTTATACGTAGGTATCCAG+AGG | 0.677982 | 6_3:+27961593 | Msa0946560:CDS |
| AGATCCACTGAGTAACCGAA+AGG | 0.686502 | 6_3:+27960031 | Msa0946560:five_prime_UTR |
| CTTATACGTAGGTATCCAGA+GGG | 0.688413 | 6_3:+27961594 | Msa0946560:CDS |
| AACCCAAAAGTAGAATACGA+CGG | 0.689064 | 6_3:+27961418 | Msa0946560:CDS |
| GCAAGTCTTCCATCACATTG+GGG | 0.693489 | 6_3:-27961647 | None:intergenic |
| CTTCATCTGAGCACCAACGG+GGG | 0.696908 | 6_3:-27960487 | None:intergenic |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 6_3:+27960365 | Msa0946560:CDS |
| TCTATATCAATCATATCACG+AGG | 0.742182 | 6_3:-27962482 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACCTTAATTTATAATAA+TGG | - | chr6_3:27961961-27961980 | None:intergenic | 10.0% |
| !! | GAAAAATAAAATATTAAACA+AGG | - | chr6_3:27962920-27962939 | None:intergenic | 10.0% |
| !!! | TTTTAGAGGATTTTTAAAAA+AGG | - | chr6_3:27960131-27960150 | None:intergenic | 15.0% |
| !!! | TTGTTTGTTTTTTCATTTAT+TGG | + | chr6_3:27960568-27960587 | Msa0946560:intron | 15.0% |
| !! | ATTGAAACTAATAATATGTT+TGG | + | chr6_3:27960753-27960772 | Msa0946560:intron | 15.0% |
| !! | TTAATTTATAATAATGGCAA+CGG | - | chr6_3:27961955-27961974 | None:intergenic | 15.0% |
| !! | AATAAACAAAACAAATGAAT+AGG | - | chr6_3:27962091-27962110 | None:intergenic | 15.0% |
| !! | AAAAACAAATATCAAAAGTA+GGG | - | chr6_3:27962805-27962824 | None:intergenic | 15.0% |
| !! | TAAAAACAAATATCAAAAGT+AGG | - | chr6_3:27962806-27962825 | None:intergenic | 15.0% |
| !!! | TTTTTAGTTTTTATACATCA+AGG | + | chr6_3:27962820-27962839 | Msa0946560:three_prime_UTR | 15.0% |
| !!! | TTTTAGTTTTTATACATCAA+GGG | + | chr6_3:27962821-27962840 | Msa0946560:three_prime_UTR | 15.0% |
| !! | GATGTGAAAATAAAAAGTAA+CGG | - | chr6_3:27960087-27960106 | None:intergenic | 20.0% |
| !!! | TTTTTAAAAAAGGAATGGTT+AGG | - | chr6_3:27960121-27960140 | None:intergenic | 20.0% |
| !!! | TAAAAATCCTCTAAAAACTT+AGG | + | chr6_3:27960135-27960154 | Msa0946560:intron | 20.0% |
| !!! | AAAAATCCTCTAAAAACTTA+GGG | + | chr6_3:27960136-27960155 | Msa0946560:intron | 20.0% |
| !!! | TATTAGTTTCAATTTGCAAT+TGG | - | chr6_3:27960746-27960765 | None:intergenic | 20.0% |
| !! | ATTAAGTTCTCAATATGTTA+GGG | - | chr6_3:27960894-27960913 | None:intergenic | 20.0% |
| !! | AATTAAGTTCTCAATATGTT+AGG | - | chr6_3:27960895-27960914 | None:intergenic | 20.0% |
| !! | ACTTAAATAGATGACATAAA+GGG | + | chr6_3:27960973-27960992 | Msa0946560:intron | 20.0% |
| !!! | GTTATTTGTTTTTTGTCTAT+AGG | + | chr6_3:27961533-27961552 | Msa0946560:intron | 20.0% |
| !!! | AAGAAGATCAAATGTTTTAT+GGG | + | chr6_3:27961854-27961873 | Msa0946560:intron | 20.0% |
| !! | GTTGCCATTATTATAAATTA+AGG | + | chr6_3:27961954-27961973 | Msa0946560:intron | 20.0% |
| !! | ATAAATTAAGGTTAATACTG+AGG | + | chr6_3:27961966-27961985 | Msa0946560:intron | 20.0% |
| !! | TTAATGTTTGTCTTGAAATA+TGG | + | chr6_3:27962188-27962207 | Msa0946560:intron | 20.0% |
| !!! | TCATAATGATATCTTTTTGT+AGG | + | chr6_3:27962325-27962344 | Msa0946560:intron | 20.0% |
| !!! | GAGGATTTTTAAAAAAGGAA+TGG | - | chr6_3:27960126-27960145 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTTGGTGAAAAA+TGG | + | chr6_3:27960254-27960273 | Msa0946560:exon | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | + | chr6_3:27960408-27960427 | Msa0946560:CDS | 25.0% |
| ! | TTTCATTTATTGGAAGTTTC+TGG | + | chr6_3:27960578-27960597 | Msa0946560:intron | 25.0% |
| ! | AAACTAATAATATGTTTGGC+TGG | + | chr6_3:27960757-27960776 | Msa0946560:intron | 25.0% |
| ! | GACTTAAATAGATGACATAA+AGG | + | chr6_3:27960972-27960991 | Msa0946560:intron | 25.0% |
| ! | TACATATCACTTATGTAGAA+TGG | + | chr6_3:27961034-27961053 | Msa0946560:intron | 25.0% |
| ! | ATACTCTTAATCAATGTTCA+CGG | - | chr6_3:27961087-27961106 | None:intergenic | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | - | chr6_3:27961511-27961530 | None:intergenic | 25.0% |
| ! | ACATTTGATCTTCTTCAAAA+GGG | - | chr6_3:27961849-27961868 | None:intergenic | 25.0% |
| ! | AACATTTGATCTTCTTCAAA+AGG | - | chr6_3:27961850-27961869 | None:intergenic | 25.0% |
| !! | GAAGAAGATCAAATGTTTTA+TGG | + | chr6_3:27961853-27961872 | Msa0946560:intron | 25.0% |
| ! | ATAATAACATTGCACATTAG+TGG | + | chr6_3:27961881-27961900 | Msa0946560:intron | 25.0% |
| ! | TAATAACATTGCACATTAGT+GGG | + | chr6_3:27961882-27961901 | Msa0946560:intron | 25.0% |
| ! | ATGGAAATAGAGATTATAGA+TGG | + | chr6_3:27962207-27962226 | Msa0946560:intron | 25.0% |
| ! | GTCAAAATCTTGTATATAGT+TGG | + | chr6_3:27962283-27962302 | Msa0946560:intron | 25.0% |
| ! | TGATATGATTGATATAGAGA+AGG | + | chr6_3:27962487-27962506 | Msa0946560:CDS | 25.0% |
| !! | ACAAAACCCTAAGTTTTTAG+AGG | - | chr6_3:27960145-27960164 | None:intergenic | 30.0% |
| CATCAATGAAATTTCGAAAG+AGG | - | chr6_3:27960182-27960201 | None:intergenic | 30.0% | |
| TTGTGAACAATCCTTTATTC+AGG | + | chr6_3:27960212-27960231 | Msa0946560:intron | 30.0% | |
| TGTTATTGATCTATTGCTTG+AGG | + | chr6_3:27960512-27960531 | Msa0946560:CDS | 30.0% | |
| ! | CTATTGCTTGAGGTAATTTT+TGG | + | chr6_3:27960522-27960541 | Msa0946560:intron | 30.0% |
| TAACCTCAAACTTAACAGAT+GGG | - | chr6_3:27960698-27960717 | None:intergenic | 30.0% | |
| TTAACCTCAAACTTAACAGA+TGG | - | chr6_3:27960699-27960718 | None:intergenic | 30.0% | |
| GTTTGCAAATTAAGCATACA+AGG | + | chr6_3:27960940-27960959 | Msa0946560:intron | 30.0% | |
| ! | AGTCATCTTCCAAGATATTT+TGG | + | chr6_3:27961154-27961173 | Msa0946560:intron | 30.0% |
| CATCAAACTCCAAAATATCT+TGG | - | chr6_3:27961166-27961185 | None:intergenic | 30.0% | |
| !!! | CAAGATATTTTGGAGTTTGA+TGG | + | chr6_3:27961164-27961183 | Msa0946560:intron | 30.0% |
| ACCAATGAAATTCCACAATT+AGG | + | chr6_3:27961256-27961275 | Msa0946560:intron | 30.0% | |
| TCCTAATTGTGGAATTTCAT+TGG | - | chr6_3:27961260-27961279 | None:intergenic | 30.0% | |
| ! | TCGTCAAAACCATATTGATT+TGG | + | chr6_3:27961286-27961305 | Msa0946560:intron | 30.0% |
| !!! | ACCATATTGATTTGGTGTTT+TGG | + | chr6_3:27961294-27961313 | Msa0946560:intron | 30.0% |
| ACCAAAACACCAAATCAATA+TGG | - | chr6_3:27961298-27961317 | None:intergenic | 30.0% | |
| ! | CTCTTACAAGGTAACTTTTA+CGG | + | chr6_3:27961450-27961469 | Msa0946560:intron | 30.0% |
| ! | TCTTACAAGGTAACTTTTAC+GGG | + | chr6_3:27961451-27961470 | Msa0946560:intron | 30.0% |
| ! | TTTTGTCTATAGGCAAAGTA+TGG | + | chr6_3:27961543-27961562 | Msa0946560:intron | 30.0% |
| AATTCTCATTTCTCACAGAT+TGG | + | chr6_3:27961772-27961791 | Msa0946560:intron | 30.0% | |
| ! | TAAGGAGCAAGATTTTGTAA+TGG | - | chr6_3:27962015-27962034 | None:intergenic | 30.0% |
| TTACAAAATCTTGCTCCTTA+AGG | + | chr6_3:27962015-27962034 | Msa0946560:intron | 30.0% | |
| AGATTATAGATGGAACTATC+AGG | + | chr6_3:27962217-27962236 | Msa0946560:intron | 30.0% | |
| AAAAACATCACCTATCACTA+AGG | - | chr6_3:27962250-27962269 | None:intergenic | 30.0% | |
| !!! | TAGTTGGCTTTTCAATGAAT+AGG | + | chr6_3:27962299-27962318 | Msa0946560:intron | 30.0% |
| TCTATATCAATCATATCACG+AGG | - | chr6_3:27962485-27962504 | None:intergenic | 30.0% | |
| GATTTCATTCTTCTTAGACT+TGG | - | chr6_3:27962609-27962628 | None:intergenic | 30.0% | |
| TGAAAACATGGCGTTGTTAA+CGG | - | chr6_3:27960059-27960078 | None:intergenic | 35.0% | |
| ! | GTAACGGAAGATTGAAAACA+TGG | - | chr6_3:27960071-27960090 | None:intergenic | 35.0% |
| GAACAACTTCACCTGAATAA+AGG | - | chr6_3:27960226-27960245 | None:intergenic | 35.0% | |
| !!! | TCGTGCGATTTTCAAGTTTT+TGG | + | chr6_3:27960244-27960263 | Msa0946560:five_prime_UTR | 35.0% |
| TAGCAGAAAACCTAATACTC+CGG | + | chr6_3:27960362-27960381 | Msa0946560:CDS | 35.0% | |
| ! | CATTTATTGGAAGTTTCTGG+TGG | + | chr6_3:27960581-27960600 | Msa0946560:intron | 35.0% |
| AGTTCTCAATATGTTAGGGT+GGG | - | chr6_3:27960890-27960909 | None:intergenic | 35.0% | |
| AAGTTCTCAATATGTTAGGG+TGG | - | chr6_3:27960891-27960910 | None:intergenic | 35.0% | |
| CAAATTAAGCATACAAGGTC+AGG | + | chr6_3:27960945-27960964 | Msa0946560:intron | 35.0% | |
| ATCACTTATGTAGAATGGTG+TGG | + | chr6_3:27961039-27961058 | Msa0946560:intron | 35.0% | |
| ATGCATCTTGTAGATCGTTA+TGG | - | chr6_3:27961117-27961136 | None:intergenic | 35.0% | |
| TAACGATCTACAAGATGCAT+AGG | + | chr6_3:27961117-27961136 | Msa0946560:intron | 35.0% | |
| ! | GAGTTTGATGGATGTTATGT+TGG | + | chr6_3:27961176-27961195 | Msa0946560:intron | 35.0% |
| GTAAGCTATCTTAAGTAGCA+TGG | - | chr6_3:27961238-27961257 | None:intergenic | 35.0% | |
| GACGAATCAATTCCTAATTG+TGG | - | chr6_3:27961271-27961290 | None:intergenic | 35.0% | |
| CATGCTTCATTTATTTGCTC+TGG | - | chr6_3:27961349-27961368 | None:intergenic | 35.0% | |
| AAGCATGCTATGTTGATATG+AGG | + | chr6_3:27961362-27961381 | Msa0946560:CDS | 35.0% | |
| AGCATGCTATGTTGATATGA+GGG | + | chr6_3:27961363-27961382 | Msa0946560:CDS | 35.0% | |
| !! | AAGATGTTTTTGAGAGTCTG+AGG | + | chr6_3:27961392-27961411 | Msa0946560:CDS | 35.0% |
| AACCCAAAAGTAGAATACGA+CGG | + | chr6_3:27961418-27961437 | Msa0946560:CDS | 35.0% | |
| ! | ATAGGCAAAGTATGGTCTTA+AGG | + | chr6_3:27961551-27961570 | Msa0946560:intron | 35.0% |
| AGCTTCTTCAACTTATACGT+AGG | + | chr6_3:27961583-27961602 | Msa0946560:CDS | 35.0% | |
| AGGTAGAATGACTTCTGTTA+GGG | + | chr6_3:27961670-27961689 | Msa0946560:intron | 35.0% | |
| ACATTTCTTACAGCACCTTA+AGG | - | chr6_3:27962033-27962052 | None:intergenic | 35.0% | |
| !! | TTAAGGTGCTGTAAGAAATG+TGG | + | chr6_3:27962032-27962051 | Msa0946560:intron | 35.0% |
| GAATAGGAAGTGAATGAACA+AGG | - | chr6_3:27962075-27962094 | None:intergenic | 35.0% | |
| CATGTAAACGTCAATGAGAA+TGG | - | chr6_3:27962137-27962156 | None:intergenic | 35.0% | |
| TACATGATACCGAGACATTA+AGG | + | chr6_3:27962151-27962170 | Msa0946560:intron | 35.0% | |
| ACATGATACCGAGACATTAA+GGG | + | chr6_3:27962152-27962171 | Msa0946560:intron | 35.0% | |
| TCCACCTTAATGTTTGCTTT+GGG | - | chr6_3:27962425-27962444 | None:intergenic | 35.0% | |
| ATCCACCTTAATGTTTGCTT+TGG | - | chr6_3:27962426-27962445 | None:intergenic | 35.0% | |
| GAGAAGGATCTTCAAAAGAA+TGG | + | chr6_3:27962503-27962522 | Msa0946560:CDS | 35.0% | |
| ATTCTTCTTAGACTTGGACT+TGG | - | chr6_3:27962603-27962622 | None:intergenic | 35.0% | |
| !! | TTTAGGTTCTGAAAAAGCTC+CGG | - | chr6_3:27962665-27962684 | None:intergenic | 35.0% |
| !! | CAGGAGTTGTTGTTTACTTT+AGG | - | chr6_3:27962682-27962701 | None:intergenic | 35.0% |
| ! | CAGCAGGTTGAAAAATATTC+AGG | + | chr6_3:27962762-27962781 | Msa0946560:three_prime_UTR | 35.0% |
| ! | CAGGTTGAAAAATATTCAGG+AGG | + | chr6_3:27962765-27962784 | Msa0946560:three_prime_UTR | 35.0% |
| TGTCTTGCAGTGTGAATTTA+AGG | - | chr6_3:27962980-27962999 | None:intergenic | 35.0% | |
| AATTCTCAAGTGACACTGAG+AGG | + | chr6_3:27960436-27960455 | Msa0946560:CDS | 40.0% | |
| ! | TTAACAGATGGGCTTCTCAA+AGG | - | chr6_3:27960687-27960706 | None:intergenic | 40.0% |
| AAGCCCATCTGTTAAGTTTG+AGG | + | chr6_3:27960692-27960711 | Msa0946560:intron | 40.0% | |
| TGAGTTTGGCTAAATCACTG+TGG | + | chr6_3:27960784-27960803 | Msa0946560:intron | 40.0% | |
| GAGTTTGGCTAAATCACTGT+GGG | + | chr6_3:27960785-27960804 | Msa0946560:intron | 40.0% | |
| AGTTTGGCTAAATCACTGTG+GGG | + | chr6_3:27960786-27960805 | Msa0946560:intron | 40.0% | |
| GTGATATGTAAACGAACCTG+TGG | - | chr6_3:27961024-27961043 | None:intergenic | 40.0% | |
| ACCCAAAAGTAGAATACGAC+GGG | + | chr6_3:27961419-27961438 | Msa0946560:CDS | 40.0% | |
| ACTTATACGTAGGTATCCAG+AGG | + | chr6_3:27961593-27961612 | Msa0946560:CDS | 40.0% | |
| CTTATACGTAGGTATCCAGA+GGG | + | chr6_3:27961594-27961613 | Msa0946560:CDS | 40.0% | |
| CCTTTAGGTCAAAAACAGCA+AGG | - | chr6_3:27961620-27961639 | None:intergenic | 40.0% | |
| !!! | CCTTGCTGTTTTTGACCTAA+AGG | + | chr6_3:27961617-27961636 | Msa0946560:CDS | 40.0% |
| TGCAAGTCTTCCATCACATT+GGG | - | chr6_3:27961651-27961670 | None:intergenic | 40.0% | |
| CAGGTAGAATGACTTCTGTT+AGG | + | chr6_3:27961669-27961688 | Msa0946560:intron | 40.0% | |
| GAAAAAACGTCGTCAGGAAA+TGG | - | chr6_3:27961717-27961736 | None:intergenic | 40.0% | |
| AATGAACAAGGTAGCAGGAA+AGG | - | chr6_3:27962063-27962082 | None:intergenic | 40.0% | |
| AAGTGAATGAACAAGGTAGC+AGG | - | chr6_3:27962068-27962087 | None:intergenic | 40.0% | |
| TGAGAATGGAAGCAAAGAGA+AGG | - | chr6_3:27962123-27962142 | None:intergenic | 40.0% | |
| TCACTCTTCCCTTAATGTCT+CGG | - | chr6_3:27962163-27962182 | None:intergenic | 40.0% | |
| AGGTCATATGCCTTAGTGAT+AGG | + | chr6_3:27962237-27962256 | Msa0946560:intron | 40.0% | |
| !! | ATGTTTGCTTTGGGGTCATT+CGG | - | chr6_3:27962416-27962435 | None:intergenic | 40.0% |
| TGACCCCAAAGCAAACATTA+AGG | + | chr6_3:27962418-27962437 | Msa0946560:CDS | 40.0% | |
| CCACCTTAATGTTTGCTTTG+GGG | - | chr6_3:27962424-27962443 | None:intergenic | 40.0% | |
| ATGACCTAAAGCAGCTGTTT+CGG | + | chr6_3:27962447-27962466 | Msa0946560:CDS | 40.0% | |
| TTAGCTTAAGCTAGATCAGC+AGG | + | chr6_3:27962746-27962765 | Msa0946560:three_prime_UTR | 40.0% | |
| ! | ACATCAAGGGTGTAAGCAAA+TGG | + | chr6_3:27962834-27962853 | Msa0946560:three_prime_UTR | 40.0% |
| !! | TTTTTCGGCCTGAAACTATC+AGG | + | chr6_3:27962934-27962953 | Msa0946560:three_prime_UTR | 40.0% |
| AACACACTCCTGATAGTTTC+AGG | - | chr6_3:27962945-27962964 | None:intergenic | 40.0% | |
| ! | GAAACTATCAGGAGTGTGTT+TGG | + | chr6_3:27962945-27962964 | Msa0946560:three_prime_UTR | 40.0% |
| TGGCTGTGTGCAATCAATGA+CGG | - | chr6_3:27959994-27960013 | None:intergenic | 45.0% | |
| AGATCCACTGAGTAACCGAA+AGG | + | chr6_3:27960031-27960050 | Msa0946560:five_prime_UTR | 45.0% | |
| CTCTGCAAGAGCAACTAGAT+AGG | + | chr6_3:27960277-27960296 | Msa0946560:CDS | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | + | chr6_3:27960365-27960384 | Msa0946560:CDS | 45.0% | |
| AAAACCTAATACTCCGGTGG+TGG | + | chr6_3:27960368-27960387 | Msa0946560:CDS | 45.0% | |
| GCTGCAAATGCATCAGCAAA+TGG | + | chr6_3:27960390-27960409 | Msa0946560:CDS | 45.0% | |
| AATATACGTAAAGCCCCCGT+TGG | + | chr6_3:27960474-27960493 | Msa0946560:CDS | 45.0% | |
| ! | TTTTCCCTCGTCTCATGCAT+CGG | - | chr6_3:27960623-27960642 | None:intergenic | 45.0% |
| TCTCAATATGTTAGGGTGGG+CGG | - | chr6_3:27960887-27960906 | None:intergenic | 45.0% | |
| TATGTAAACGAACCTGTGGC+AGG | - | chr6_3:27961020-27961039 | None:intergenic | 45.0% | |
| !! | GCCCGTCGTATTCTACTTTT+GGG | - | chr6_3:27961423-27961442 | None:intergenic | 45.0% |
| ! | TGCCCGTCGTATTCTACTTT+TGG | - | chr6_3:27961424-27961443 | None:intergenic | 45.0% |
| AAGTAGAATACGACGGGCAA+CGG | + | chr6_3:27961425-27961444 | Msa0946560:CDS | 45.0% | |
| CATTGGGGTAAGCATCCTTT+AGG | - | chr6_3:27961635-27961654 | None:intergenic | 45.0% | |
| GCAAGTCTTCCATCACATTG+GGG | - | chr6_3:27961650-27961669 | None:intergenic | 45.0% | |
| CTGCAAGTCTTCCATCACAT+TGG | - | chr6_3:27961652-27961671 | None:intergenic | 45.0% | |
| ! | CAATGTGATGGAAGACTTGC+AGG | + | chr6_3:27961650-27961669 | Msa0946560:CDS | 45.0% |
| GCTACTGAAAAAACGTCGTC+AGG | - | chr6_3:27961723-27961742 | None:intergenic | 45.0% | |
| !!! | CGACGTTTTTTCAGTAGCAG+TGG | + | chr6_3:27961725-27961744 | Msa0946560:intron | 45.0% |
| !!! | TTCCACTTTTTCCCAACCCT+TGG | + | chr6_3:27961921-27961940 | Msa0946560:intron | 45.0% |
| !! | CGGTTTTAATGCCAAGGGTT+GGG | - | chr6_3:27961935-27961954 | None:intergenic | 45.0% |
| !! | ACGGTTTTAATGCCAAGGGT+TGG | - | chr6_3:27961936-27961955 | None:intergenic | 45.0% |
| !! | GGCAACGGTTTTAATGCCAA+GGG | - | chr6_3:27961940-27961959 | None:intergenic | 45.0% |
| !! | TGGCAACGGTTTTAATGCCA+AGG | - | chr6_3:27961941-27961960 | None:intergenic | 45.0% |
| !! | TTGTAGGCTTTGAAAGCTGC+AGG | + | chr6_3:27962341-27962360 | Msa0946560:intron | 45.0% |
| !! | TGTAGGCTTTGAAAGCTGCA+GGG | + | chr6_3:27962342-27962361 | Msa0946560:intron | 45.0% |
| GCTGTCCAACTTTGATTCAC+AGG | + | chr6_3:27962376-27962395 | Msa0946560:CDS | 45.0% | |
| GTCGTCCTGTGAATCAAAGT+TGG | - | chr6_3:27962384-27962403 | None:intergenic | 45.0% | |
| !! | TGTTTGCTTTGGGGTCATTC+GGG | - | chr6_3:27962415-27962434 | None:intergenic | 45.0% |
| CCCCAAAGCAAACATTAAGG+TGG | + | chr6_3:27962421-27962440 | Msa0946560:CDS | 45.0% | |
| ! | TACTCCGAAACAGCTGCTTT+AGG | - | chr6_3:27962454-27962473 | None:intergenic | 45.0% |
| AGGACTGCAGCACAAATTGA+TGG | + | chr6_3:27962557-27962576 | Msa0946560:CDS | 45.0% | |
| CTTAGACTTGGACTTGGACT+TGG | - | chr6_3:27962597-27962616 | None:intergenic | 45.0% | |
| ! | ATTGGTCAGCTTGGTTCTCT+TGG | - | chr6_3:27962633-27962652 | None:intergenic | 45.0% |
| AAGATGGGAATTGGTCAGCT+TGG | - | chr6_3:27962642-27962661 | None:intergenic | 45.0% | |
| CTGAAAAAGCTCCGGAAGAT+GGG | - | chr6_3:27962657-27962676 | None:intergenic | 45.0% | |
| TCTGAAAAAGCTCCGGAAGA+TGG | - | chr6_3:27962658-27962677 | None:intergenic | 45.0% | |
| ! | TCCTGATTAGCTCACTGCAA+GGG | + | chr6_3:27962697-27962716 | Msa0946560:three_prime_UTR | 45.0% |
| ! | TCAAGGGTGTAAGCAAATGG+TGG | + | chr6_3:27962837-27962856 | Msa0946560:three_prime_UTR | 45.0% |
| !!! | TTGTTTAATATTTTATTTTT+CGG | + | chr6_3:27962919-27962938 | Msa0946560:three_prime_UTR | 5.0% |
| GCGTTGTTAACGGCACCTTT+CGG | - | chr6_3:27960049-27960068 | None:intergenic | 50.0% | |
| AGCATTGCGTCGAGCAAAGT+TGG | + | chr6_3:27960339-27960358 | Msa0946560:CDS | 50.0% | |
| ACGCTTCATCTGAGCACCAA+CGG | - | chr6_3:27960493-27960512 | None:intergenic | 50.0% | |
| TGATTCCGATGCATGAGACG+AGG | + | chr6_3:27960615-27960634 | Msa0946560:intron | 50.0% | |
| GATTCCGATGCATGAGACGA+GGG | + | chr6_3:27960616-27960635 | Msa0946560:intron | 50.0% | |
| GTTTGGCTGGACACTGAGTT+TGG | + | chr6_3:27960770-27960789 | Msa0946560:intron | 50.0% | |
| TCAAATCCCAATCCTGCCAC+AGG | + | chr6_3:27961005-27961024 | Msa0946560:intron | 50.0% | |
| AACGAACCTGTGGCAGGATT+GGG | - | chr6_3:27961014-27961033 | None:intergenic | 50.0% | |
| AAACGAACCTGTGGCAGGAT+TGG | - | chr6_3:27961015-27961034 | None:intergenic | 50.0% | |
| TCAAAAACAGCAAGGCCCTC+TGG | - | chr6_3:27961612-27961631 | None:intergenic | 50.0% | |
| GGATGCTTACCCCAATGTGA+TGG | + | chr6_3:27961638-27961657 | Msa0946560:CDS | 50.0% | |
| TGCCAAGGGTTGGGAAAAAG+TGG | - | chr6_3:27961926-27961945 | None:intergenic | 50.0% | |
| TGAAAGCTGCAGGGCAGATT+TGG | + | chr6_3:27962351-27962370 | Msa0946560:CDS | 50.0% | |
| !! | CTCTTTGCAGTGTTGGTAGC+AGG | - | chr6_3:27962536-27962555 | None:intergenic | 50.0% |
| CTGCTACCAACACTGCAAAG+AGG | + | chr6_3:27962534-27962553 | Msa0946560:CDS | 50.0% | |
| CTACCAACACTGCAAAGAGG+AGG | + | chr6_3:27962537-27962556 | Msa0946560:CDS | 50.0% | |
| AGTCCTCCTCTTTGCAGTGT+TGG | - | chr6_3:27962543-27962562 | None:intergenic | 50.0% | |
| CTTGGACTTGGACTTGGACT+TGG | - | chr6_3:27962591-27962610 | None:intergenic | 50.0% | |
| GCTGACCAATTCCCATCTTC+CGG | + | chr6_3:27962643-27962662 | Msa0946560:CDS | 50.0% | |
| AAGCTCCGGAAGATGGGAAT+TGG | - | chr6_3:27962651-27962670 | None:intergenic | 50.0% | |
| ! | CTCCTGATTAGCTCACTGCA+AGG | + | chr6_3:27962696-27962715 | Msa0946560:three_prime_UTR | 50.0% |
| TCCCTTGCAGTGAGCTAATC+AGG | - | chr6_3:27962701-27962720 | None:intergenic | 50.0% | |
| !! | GGTGTAAGCAAATGGTGGAC+TGG | + | chr6_3:27962842-27962861 | Msa0946560:three_prime_UTR | 50.0% |
| TCAGTGGATCTGCTGGTCAC+TGG | - | chr6_3:27960022-27960041 | None:intergenic | 55.0% | |
| CGGTTACTCAGTGGATCTGC+TGG | - | chr6_3:27960029-27960048 | None:intergenic | 55.0% | |
| GGCACCTTTCGGTTACTCAG+TGG | - | chr6_3:27960038-27960057 | None:intergenic | 55.0% | |
| GATGCATTTGCAGCCACCAC+CGG | - | chr6_3:27960384-27960403 | None:intergenic | 55.0% | |
| CTTCATCTGAGCACCAACGG+GGG | - | chr6_3:27960490-27960509 | None:intergenic | 55.0% | |
| GCTTCATCTGAGCACCAACG+GGG | - | chr6_3:27960491-27960510 | None:intergenic | 55.0% | |
| CGCTTCATCTGAGCACCAAC+GGG | - | chr6_3:27960492-27960511 | None:intergenic | 55.0% | |
| CGGGCAACGGTTCTCTTACA+AGG | + | chr6_3:27961438-27961457 | Msa0946560:CDS | 55.0% | |
| ! | TCTGCTGGTCACTGGCTGTG+TGG | - | chr6_3:27960014-27960033 | None:intergenic | 60.0% |
| ! | GCAGCCACCACCGGAGTATT+AGG | - | chr6_3:27960375-27960394 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 27959948 | 27963015 | 27959948 | ID=Msa0946560;Name=Msa0946560 |
| chr6_3 | mRNA | 27959948 | 27963015 | 27959948 | ID=Msa0946560-mRNA-1;Parent=Msa0946560;Name=Msa0946560-mRNA-1;_AED=0.22;_eAED=0.22;_QI=144|1|1|1|0.75|0.6|5|327|283 |
| chr6_3 | exon | 27959948 | 27960052 | 27959948 | ID=Msa0946560-mRNA-1:exon:7565;Parent=Msa0946560-mRNA-1 |
| chr6_3 | exon | 27960234 | 27960533 | 27960234 | ID=Msa0946560-mRNA-1:exon:7566;Parent=Msa0946560-mRNA-1 |
| chr6_3 | exon | 27961328 | 27961459 | 27961328 | ID=Msa0946560-mRNA-1:exon:7567;Parent=Msa0946560-mRNA-1 |
| chr6_3 | exon | 27961555 | 27961671 | 27961555 | ID=Msa0946560-mRNA-1:exon:7568;Parent=Msa0946560-mRNA-1 |
| chr6_3 | exon | 27962347 | 27963015 | 27962347 | ID=Msa0946560-mRNA-1:exon:7569;Parent=Msa0946560-mRNA-1 |
| chr6_3 | five_prime_UTR | 27959948 | 27960052 | 27959948 | ID=Msa0946560-mRNA-1:five_prime_utr;Parent=Msa0946560-mRNA-1 |
| chr6_3 | five_prime_UTR | 27960234 | 27960272 | 27960234 | ID=Msa0946560-mRNA-1:five_prime_utr;Parent=Msa0946560-mRNA-1 |
| chr6_3 | CDS | 27960273 | 27960533 | 27960273 | ID=Msa0946560-mRNA-1:cds;Parent=Msa0946560-mRNA-1 |
| chr6_3 | CDS | 27961328 | 27961459 | 27961328 | ID=Msa0946560-mRNA-1:cds;Parent=Msa0946560-mRNA-1 |
| chr6_3 | CDS | 27961555 | 27961671 | 27961555 | ID=Msa0946560-mRNA-1:cds;Parent=Msa0946560-mRNA-1 |
| chr6_3 | CDS | 27962347 | 27962688 | 27962347 | ID=Msa0946560-mRNA-1:cds;Parent=Msa0946560-mRNA-1 |
| chr6_3 | three_prime_UTR | 27962689 | 27963015 | 27962689 | ID=Msa0946560-mRNA-1:three_prime_utr;Parent=Msa0946560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
