AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572610 MtrunA17_Chr8g0388051 98.724 627 8 0 1 627 1 627 0.0 1286
Msa0572610 MtrunA17_Chr3g0119371 60.083 481 190 1 13 491 25 505 0.0 634
Msa0572610 MtrunA17_Chr5g0439311 58.434 498 198 3 1 491 1 496 0.0 632
Msa0572610 MtrunA17_Chr4g0038131 50.327 612 290 8 26 624 26 636 0.0 617
Msa0572610 MtrunA17_Chr1g0164201 53.623 483 214 5 13 492 7 482 7.82e-176 508
Msa0572610 MtrunA17_Chr3g0145261 51.178 467 217 6 27 489 23 482 8.65e-162 472
Msa0572610 MtrunA17_Chr1g0195271 52.220 473 214 7 27 496 38 501 2.23e-160 469
Msa0572610 MtrunA17_Chr3g0119821 49.686 477 228 8 21 493 27 495 1.58e-158 464
Msa0572610 MtrunA17_Chr8g0391391 50.000 474 224 8 24 492 26 491 3.73e-157 461
Msa0572610 MtrunA17_Chr5g0444721 55.041 367 160 2 128 491 200 564 4.05e-145 432
Msa0572610 MtrunA17_Chr5g0444721 55.801 181 72 3 4 180 13 189 1.70e-57 203
Msa0572610 MtrunA17_Chr5g0397201 47.679 474 229 6 24 493 36 494 3.56e-144 428
Msa0572610 MtrunA17_Chr4g0018301 46.737 475 235 8 17 489 37 495 3.84e-144 427
Msa0572610 MtrunA17_Chr3g0086311 46.695 469 234 5 25 492 27 480 6.68e-140 416
Msa0572610 MtrunA17_Chr3g0080171 47.669 472 231 8 28 495 25 484 6.90e-140 416
Msa0572610 MtrunA17_Chr4g0018361 44.378 498 252 9 4 489 3 487 7.67e-136 406
Msa0572610 MtrunA17_Chr3g0142501 46.695 469 236 10 29 491 58 518 2.23e-132 398
Msa0572610 MtrunA17_Chr5g0397181 47.188 409 197 6 89 493 1 394 8.36e-121 364
Msa0572610 MtrunA17_Chr8g0372031 44.872 468 246 8 29 491 64 524 2.35e-119 365
Msa0572610 MtrunA17_Chr3g0136381 47.397 365 177 4 25 388 27 377 9.16e-112 342
Msa0572610 MtrunA17_Chr2g0291461 43.585 491 242 14 28 493 111 591 1.68e-108 340
Msa0572610 MtrunA17_Chr3g0120661 41.379 493 253 17 28 496 116 596 6.70e-97 310
Msa0572610 MtrunA17_Chr3g0126111 38.211 492 261 16 28 491 107 583 5.80e-90 291
Msa0572610 MtrunA17_Chr4g0018341 43.860 285 145 7 208 489 2 274 3.92e-72 234
Msa0572610 MtrunA17_Chr4g0018351 52.747 182 84 1 28 209 30 209 5.04e-59 197
Msa0572610 MtrunA17_Chr1g0164181 56.906 181 73 2 70 246 3 182 9.25e-56 192
Msa0572610 MtrunA17_Chr1g0164181 49.068 161 81 1 329 489 170 329 3.91e-47 169
Msa0572610 MtrunA17_Chr7g0269571 44.134 179 88 2 335 502 43 220 3.88e-45 160
Msa0572610 MtrunA17_Chr4g0022271 43.571 140 74 1 335 474 20 154 4.09e-33 125
Msa0572610 MtrunA17_Chr4g0072811 40.789 152 85 3 342 492 19 166 1.57e-29 115
Msa0572610 MtrunA17_Chr3g0136371 46.809 94 49 1 388 481 1 93 2.13e-22 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572610 AT1G64390.1 78.405 602 126 2 26 627 23 620 0.0 994
Msa0572610 AT4G11050.3 75.874 601 145 0 26 626 24 624 0.0 960
Msa0572610 AT4G11050.1 75.578 606 139 2 26 626 24 625 0.0 957
Msa0572610 AT4G11050.2 77.381 504 114 0 26 529 24 527 0.0 818
Msa0572610 AT2G32990.1 59.100 489 198 1 4 490 15 503 0.0 618
Msa0572610 AT1G48930.1 52.066 605 278 5 27 625 29 627 0.0 593
Msa0572610 AT2G44550.1 53.002 483 220 3 7 489 12 487 1.09e-173 503
Msa0572610 AT2G44570.1 51.633 490 227 5 7 492 9 492 2.63e-172 499
Msa0572610 AT2G44540.1 51.959 485 227 3 7 491 12 490 3.03e-171 497
Msa0572610 AT2G44560.1 53.333 480 215 4 16 492 18 491 9.60e-167 485
Msa0572610 AT1G70710.1 48.583 494 244 6 1 492 1 486 2.53e-159 466
Msa0572610 AT4G02290.1 51.586 473 217 7 27 496 51 514 9.58e-159 466
Msa0572610 AT1G02800.1 52.350 468 211 7 27 492 42 499 9.54e-158 462
Msa0572610 AT1G23210.1 48.861 483 237 6 13 493 13 487 6.52e-155 455
Msa0572610 AT4G39010.1 47.619 483 240 8 19 496 21 495 3.88e-150 443
Msa0572610 AT4G23560.1 47.800 500 236 9 1 496 1 479 2.55e-144 427
Msa0572610 AT1G71380.1 47.571 494 241 9 8 495 1 482 1.51e-143 426
Msa0572610 AT4G09740.1 48.081 495 232 9 1 491 1 474 2.50e-143 425
Msa0572610 AT1G19940.2 48.807 461 226 7 28 486 48 500 5.09e-141 421
Msa0572610 AT1G19940.1 48.807 461 226 7 28 486 48 500 5.09e-141 421
Msa0572610 AT3G43860.2 46.581 468 234 5 28 494 34 486 2.31e-140 417
Msa0572610 AT3G43860.1 46.581 468 234 5 28 494 34 486 2.31e-140 417
Msa0572610 AT1G22880.1 48.660 485 230 10 12 489 4 476 2.39e-140 417
Msa0572610 AT4G39000.1 47.639 487 243 7 8 489 5 484 1.50e-135 405
Msa0572610 AT1G75680.1 47.149 456 231 7 29 482 58 505 3.45e-132 398
Msa0572610 AT4G38990.2 44.960 496 247 11 7 489 5 487 6.84e-129 389
Msa0572610 AT4G02290.2 48.418 411 200 7 89 496 1 402 2.66e-123 371
Msa0572610 AT2G44570.2 49.482 386 185 5 7 388 9 388 1.45e-120 364
Msa0572610 AT1G22880.2 46.782 404 200 8 89 489 1 392 8.21e-112 341
Msa0572610 AT4G39010.2 46.524 374 188 7 19 387 21 387 2.09e-110 337
Msa0572610 AT1G19940.3 49.311 363 179 5 28 388 48 407 5.28e-109 335
Msa0572610 AT5G49720.1 42.394 493 245 15 28 493 108 588 1.69e-99 317
Msa0572610 AT4G24260.1 40.891 494 251 16 28 493 108 588 7.65e-92 296
Msa0572610 AT1G65610.1 38.367 490 271 14 28 496 116 595 3.53e-91 295
Msa0572610 AT1G22880.3 51.899 316 135 8 12 321 4 308 1.23e-86 274
Msa0572610 AT4G38990.1 43.646 362 171 7 7 366 5 335 2.90e-83 265
Msa0572610 AT4G24260.3 37.984 387 208 13 28 388 108 488 1.41e-54 194
Msa0572610 AT4G24260.2 40.000 315 161 10 28 319 108 417 2.89e-52 186

Find 213 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACACAGCTGACAAATTT+TGG 0.076196 4_1:-75544434 None:intergenic
AATTACATTAAATAATTTAA+TGG 0.144030 4_1:-75540431 None:intergenic
CTTTCAATATCCAAGCTTTA+TGG 0.163235 4_1:+75545085 Msa0572610:CDS
GCAGGGGATAATGTGAAATT+TGG 0.209337 4_1:+75541048 Msa0572610:CDS
CCTGGGGATGGACTTGTCTT+TGG 0.241819 4_1:-75544816 None:intergenic
AGAATAGACAGTGGCTAAAA+AGG 0.248840 4_1:-75544004 None:intergenic
ATTGAGAGACTTGAGATTCT+TGG 0.259352 4_1:-75545062 None:intergenic
GCTCGAGGGTCTATATATTA+AGG 0.263755 4_1:-75540515 None:intergenic
CTTCCATCATTATCCTTTGC+TGG 0.274730 4_1:+75540772 Msa0572610:CDS
CACCGACCGTCGCGCTTATA+AGG 0.277946 4_1:+75541570 Msa0572610:CDS
TACAACAATGCTCCTCTTAT+AGG 0.283700 4_1:+75544590 Msa0572610:CDS
TCTGACTACCTTGCTTCTTC+TGG 0.283844 4_1:+75544024 Msa0572610:CDS
CTTCAGGTGGACTACATTCT+TGG 0.288738 4_1:+75544311 Msa0572610:intron
AATGAACTTCTTAACATGTT+AGG 0.300695 4_1:+75545557 Msa0572610:three_prime_UTR
GGCTATAACCAGCTCCTTCC+AGG 0.305074 4_1:+75544644 Msa0572610:CDS
TCCATCTTTGACGGTATATT+AGG 0.306267 4_1:-75543954 None:intergenic
TCGTATAATCCCGCTAATTA+AGG 0.306702 4_1:-75540614 None:intergenic
CTCATAACCAAAGAGTTTCA+TGG 0.313102 4_1:+75540866 Msa0572610:CDS
ACAAGTTACATGGTTGGATA+TGG 0.330317 4_1:+75544350 Msa0572610:CDS
GAGATCTCCATGAAACTCTT+TGG 0.338799 4_1:-75540873 None:intergenic
TTATGCTGGCAATGCTTGTT+TGG 0.341209 4_1:+75545694 Msa0572610:three_prime_UTR
CCAAGCTTTATGGTCCAATC+TGG 0.342042 4_1:+75545095 Msa0572610:CDS
CATGAAACTCTTTGGTTATG+AGG 0.347981 4_1:-75540865 None:intergenic
TAGCACAAACTGTTTATATA+TGG 0.351194 4_1:-75545658 None:intergenic
AGAAACTTGAGATGTGCTTC+TGG 0.351844 4_1:+75544048 Msa0572610:CDS
CCTCAACCTAATCTTCTCTA+TGG 0.353090 4_1:+75541207 Msa0572610:CDS
CAAGGTAATCCAAGTAATAT+TGG 0.354348 4_1:-75543583 None:intergenic
AGGAACTTGTGGCAAATTGC+AGG 0.357481 4_1:-75543981 None:intergenic
GGAGCATTGTTGTAGGTTGC+TGG 0.357895 4_1:-75544581 None:intergenic
GGCAAATGACTGAATTTAGT+TGG 0.360328 4_1:+75543639 Msa0572610:CDS
GGATGGACTTGTCTTTGGTT+TGG 0.362387 4_1:-75544811 None:intergenic
TCATGGAGTATCATTGAATA+TGG 0.364133 4_1:+75541102 Msa0572610:CDS
GCGCGCAGGACGAATTGCTC+TGG 0.369511 4_1:+75543528 Msa0572610:intron
CAGGGGATAATGTGAAATTT+GGG 0.374704 4_1:+75541049 Msa0572610:CDS
TTGGATTACCTTGGTAGAAA+TGG 0.375820 4_1:+75543593 Msa0572610:CDS
ATCTGGGGACTCACAAAGTT+TGG 0.375941 4_1:+75545112 Msa0572610:CDS
TTGAGATATATGAGGTCTAA+TGG 0.382934 4_1:+75545764 Msa0572610:three_prime_UTR
GTTTCATGGAGATCTCATTC+TGG 0.384017 4_1:+75540880 Msa0572610:CDS
TTTGCTGGTGGCCATGACTA+TGG 0.386715 4_1:+75540787 Msa0572610:CDS
TTCTTTGAAGCTCAGAGATC+TGG 0.394177 4_1:+75540835 Msa0572610:CDS
GAAGAGAAGAGTACAGGGAT+TGG 0.399049 4_1:-75540548 None:intergenic
CATAGCGGCGGCGGTTTCTC+CGG 0.399280 4_1:-75541623 None:intergenic
ACCATGTAACTTGTAGCTCT+TGG 0.401704 4_1:-75544341 None:intergenic
CCAAAATTTGTCAGCTGTGT+TGG 0.401906 4_1:+75544434 Msa0572610:CDS
GTGTTGGAGGTTATGCTACT+TGG 0.404315 4_1:+75544450 Msa0572610:CDS
AATCCTGGGTCGGATCTTGC+CGG 0.417966 4_1:+75541604 Msa0572610:CDS
TTCATAGTTCTTTCTTTCAT+CGG 0.418775 4_1:-75544549 None:intergenic
TGGCCTGAGAACGATCGATT+TGG 0.420050 4_1:+75545248 Msa0572610:exon
AGCAGCAGCCATAGCGGCGG+CGG 0.422074 4_1:-75541632 None:intergenic
AGCAGAAAATGACCAGCTCT+TGG 0.423043 4_1:+75544984 Msa0572610:CDS
GAATGTTGCTTGGTAACAAC+AGG 0.424815 4_1:-75544783 None:intergenic
AGTTGGGATGTTAAGTATCC+TGG 0.425588 4_1:+75543656 Msa0572610:CDS
CGGAGAAACCGCCGCCGCTA+TGG 0.426804 4_1:+75541624 Msa0572610:CDS
GAGAGAGAAGAGAAGAGTAC+AGG 0.427889 4_1:-75540554 None:intergenic
CCATGTAACTTGTAGCTCTT+GGG 0.429115 4_1:-75544340 None:intergenic
CTCGAGGGTCTATATATTAA+GGG 0.430219 4_1:-75540514 None:intergenic
CCTCTGTGGTGAACTCTTTG+AGG 0.436320 4_1:-75544383 None:intergenic
AAGGTTGATCCAAGTAATCC+TGG 0.439286 4_1:+75541589 Msa0572610:CDS
AGATCCGACCCAGGATTACT+TGG 0.447273 4_1:-75541598 None:intergenic
AAACCAAATCGATCGTTCTC+AGG 0.447646 4_1:-75545251 None:intergenic
AAGGAGAGAAGCTGGGAAGA+AGG 0.450378 4_1:-75544078 None:intergenic
AAAATTTGTTGAATGCAGTT+AGG 0.453192 4_1:-75540696 None:intergenic
ATGCCATGGAAGCTGTGAAA+TGG 0.453582 4_1:+75541157 Msa0572610:CDS
GTAACAACAGGCTTACGAAC+TGG 0.454247 4_1:-75544771 None:intergenic
CACCAGCTTTCCCTTGCATC+AGG 0.455015 4_1:-75543831 None:intergenic
ACCTCTCCATAGAGAAGATT+AGG 0.455717 4_1:-75541213 None:intergenic
ATCTAACAACCAATATTACT+TGG 0.456025 4_1:+75543574 Msa0572610:CDS
CGCGCAGGACGAATTGCTCT+GGG 0.457142 4_1:+75543529 Msa0572610:intron
TGCCATGGAAGCTGTGAAAT+GGG 0.457644 4_1:+75541158 Msa0572610:CDS
GGCATGACGGAGGAGTTCTC+TGG 0.457951 4_1:-75541689 None:intergenic
AATAGATAGATTATATAAGA+TGG 0.458680 4_1:+75545392 Msa0572610:three_prime_UTR
ACCAGCTCTTGGGTTGCAAA+TGG 0.462069 4_1:+75544995 Msa0572610:CDS
AAAATACACAAGAGAAGAAA+AGG 0.464011 4_1:-75545347 None:intergenic
GGATTCTCTCCTTAATTAGC+GGG 0.467687 4_1:+75540605 Msa0572610:five_prime_UTR
ACTTTGCAAAGGAGAGAAGC+TGG 0.472670 4_1:-75544086 None:intergenic
CAAGCTTTATGGTCCAATCT+GGG 0.473029 4_1:+75545096 Msa0572610:CDS
GCAGAAAATGACCAGCTCTT+GGG 0.474408 4_1:+75544985 Msa0572610:CDS
GCAAATGACTGAATTTAGTT+GGG 0.474466 4_1:+75543640 Msa0572610:CDS
TCCATTTGCAACCCAAGAGC+TGG 0.474926 4_1:-75544996 None:intergenic
AACTTTGTGAGTCCCCAGAT+TGG 0.476253 4_1:-75545109 None:intergenic
TATAAGAGGAGCATTGTTGT+AGG 0.476603 4_1:-75544588 None:intergenic
TCTCTCCTTTGCAAAGTCTC+AGG 0.480867 4_1:+75544092 Msa0572610:CDS
GGTGACTCCATGGGTGGAAC+TGG 0.481443 4_1:+75543614 Msa0572610:CDS
AGGAGAGAAGCTGGGAAGAA+GGG 0.482100 4_1:-75544077 None:intergenic
GCCTAATATACCGTCAAAGA+TGG 0.483382 4_1:+75543953 Msa0572610:CDS
ATGTGTTCATGCATTGGAAA+GGG 0.484557 4_1:+75543901 Msa0572610:CDS
CTCAGTTGCGAACTACTCAT+TGG 0.484728 4_1:+75545228 Msa0572610:CDS
CATTGAATATGGTAAACAAA+TGG 0.486074 4_1:+75541113 Msa0572610:CDS
AGTAACACCAATGTACTAAC+CGG 0.486227 4_1:+75544488 Msa0572610:CDS
GTGGGTGGTTACTATGATGC+AGG 0.488574 4_1:+75541030 Msa0572610:CDS
TTCCTGATGCAAGGGAAAGC+TGG 0.488889 4_1:+75543829 Msa0572610:CDS
GGCAATGAGTTGATCCATGC+TGG 0.489681 4_1:-75545151 None:intergenic
TATTTCATGTGTTCATGCAT+TGG 0.491737 4_1:+75543895 Msa0572610:CDS
CATCTGCTGGAGTGGTAGAA+TGG 0.497139 4_1:-75545204 None:intergenic
AGGAGTTCTCTGGAATAAGC+AGG 0.497360 4_1:-75541679 None:intergenic
TTCGCAACTGAGACATCTGC+TGG 0.499051 4_1:-75545217 None:intergenic
AGAGAGAAGAGAAGAGTACA+GGG 0.502559 4_1:-75540553 None:intergenic
GCAAAGTCATCATAAGCATC+AGG 0.504518 4_1:-75544527 None:intergenic
AAATTTGTCAGCTGTGTTGG+AGG 0.507805 4_1:+75544437 Msa0572610:CDS
TAATGCTCTTGCTTAGAGCT+TGG 0.508452 4_1:-75540810 None:intergenic
GCAGGTTGTTCCATCTTTGA+CGG 0.515262 4_1:-75543963 None:intergenic
GTACTAACCGGTGCTATTGT+TGG 0.516769 4_1:+75544500 Msa0572610:CDS
CGCAATATTCAGAAGACACC+TGG 0.521492 4_1:+75543928 Msa0572610:CDS
ACTCCTCCGTCATGCCTATG+AGG 0.521668 4_1:+75541696 Msa0572610:CDS
TTCATCCATTGTGTCAATCA+AGG 0.521822 4_1:+75544406 Msa0572610:CDS
CATGTGTTCATGCATTGGAA+AGG 0.526676 4_1:+75543900 Msa0572610:CDS
CAATATTACTTGGATTACCT+TGG 0.529451 4_1:+75543584 Msa0572610:CDS
ATGGCTAGTAGTGGTGAACT+TGG 0.530079 4_1:+75541132 Msa0572610:CDS
CGTGCAAGAACACCTATAAG+AGG 0.534994 4_1:-75544602 None:intergenic
TTGTAAAGCGGATAAGAAAG+AGG 0.536239 4_1:-75545462 None:intergenic
ACTTACATTGTAGCCACTGA+TGG 0.537291 4_1:-75543429 None:intergenic
CTCTGTGGTGAACTCTTTGA+GGG 0.538204 4_1:-75544382 None:intergenic
CCACAAGTGTTGGCAAAGAC+CGG 0.538470 4_1:+75541537 Msa0572610:CDS
CGGTCGGTGGTCATATCCTC+CGG 0.538882 4_1:-75541556 None:intergenic
TTCAAGACGGTAAAGCTAGT+GGG 0.539724 4_1:+75540905 Msa0572610:CDS
CCAGATTGGACCATAAAGCT+TGG 0.539856 4_1:-75545095 None:intergenic
GGGGAAGAGTGTGAAAAGGA+AGG 0.540413 4_1:-75540494 None:intergenic
CCCAAGAGCTACAAGTTACA+TGG 0.541633 4_1:+75544340 Msa0572610:CDS
GAACTTCTTAACATGTTAGG+AGG 0.545801 4_1:+75545560 Msa0572610:three_prime_UTR
TTAGAGCTTGGCCATAGTCA+TGG 0.546404 4_1:-75540798 None:intergenic
TTAAGGGGAAGAGTGTGAAA+AGG 0.546705 4_1:-75540498 None:intergenic
AAATTTGCAGGTAGATCTAG+TGG 0.546951 4_1:+75541011 Msa0572610:intron
CCATCATTATCCTTTGCTGG+TGG 0.548930 4_1:+75540775 Msa0572610:CDS
TTGCCAACCAGTTCCACCCA+TGG 0.549327 4_1:-75543621 None:intergenic
TGTTCAGACTTTAGTTGCCA+AGG 0.550613 4_1:+75543679 Msa0572610:CDS
AGTGTTGAGTGAAACCTCAT+AGG 0.550944 4_1:-75541710 None:intergenic
ATGGAAGGAGCGGTGCAGAA+AGG 0.551744 4_1:+75545411 Msa0572610:three_prime_UTR
TGGTAGAAATGGTGACTCCA+TGG 0.555052 4_1:+75543604 Msa0572610:CDS
ACCCCATTTCACAGCTTCCA+TGG 0.557009 4_1:-75541160 None:intergenic
TGCCAATACCTGGAAGGAGC+TGG 0.560118 4_1:-75544652 None:intergenic
TTTGACAAATAGGTAGGAGA+TGG 0.560365 4_1:+75541505 Msa0572610:intron
GGCTATAAACGTTTCTGATG+AGG 0.560878 4_1:-75540360 None:intergenic
TTTGGTGAATGAATGTTGCT+TGG 0.561844 4_1:-75544793 None:intergenic
ATTGTAACAGTAAATGCCAT+TGG 0.561988 4_1:-75541075 None:intergenic
CCGGTCTTTGCCAACACTTG+TGG 0.562723 4_1:-75541537 None:intergenic
TGGATCAACTCATTGCCAGC+AGG 0.562798 4_1:+75545157 Msa0572610:CDS
GATAGATTATATAAGATGGA+AGG 0.563313 4_1:+75545396 Msa0572610:three_prime_UTR
CTTCAAGACGGTAAAGCTAG+TGG 0.564755 4_1:+75540904 Msa0572610:CDS
CCACCAGCAAAGGATAATGA+TGG 0.565549 4_1:-75540775 None:intergenic
ATAGTCATGGCCACCAGCAA+AGG 0.568054 4_1:-75540785 None:intergenic
AGGATTCTCTCCTTAATTAG+CGG 0.568154 4_1:+75540604 Msa0572610:five_prime_UTR
AATAGCACCGGTTAGTACAT+TGG 0.568895 4_1:-75544495 None:intergenic
AACTGAGACATCTGCTGGAG+TGG 0.571057 4_1:-75545212 None:intergenic
TGTGAAATTTGGGTTACCAA+TGG 0.573120 4_1:+75541059 Msa0572610:CDS
GCACGACTCAGTGGTGGTCA+TGG 0.574843 4_1:+75544620 Msa0572610:CDS
ATTCCAACTTGAGATATATG+AGG 0.579300 4_1:+75545756 Msa0572610:three_prime_UTR
TTACTGTTACAATGATGTCA+TGG 0.585136 4_1:+75541085 Msa0572610:CDS
TGGGTGGTTACTATGATGCA+GGG 0.585634 4_1:+75541031 Msa0572610:CDS
CTTTGCAAAGGAGAGAAGCT+GGG 0.586238 4_1:-75544085 None:intergenic
AGAGCTACAAGTTACATGGT+TGG 0.587116 4_1:+75544344 Msa0572610:CDS
TACCAAACAGTACCTGGGGA+TGG 0.590057 4_1:-75544828 None:intergenic
ATTCATATACATTCCCAGCA+TGG 0.591029 4_1:+75545137 Msa0572610:CDS
ATTAGCCTTGATTGACACAA+TGG 0.591359 4_1:-75544411 None:intergenic
TGACGGTATATTAGGCCACC+AGG 0.593993 4_1:-75543946 None:intergenic
CCATAGAGAAGATTAGGTTG+AGG 0.596730 4_1:-75541207 None:intergenic
ATTGGAAACTGAGGAGCTCG+AGG 0.598487 4_1:-75540530 None:intergenic
CTAACCGGTGCTATTGTTGG+TGG 0.600226 4_1:+75544503 Msa0572610:CDS
AGACCTCATATATCTCAAGT+TGG 0.601820 4_1:-75545759 None:intergenic
ACTGTATATAAGTTGTAAAG+CGG 0.608093 4_1:-75545474 None:intergenic
GGAAGCAGCAGCCATAGCGG+CGG 0.609285 4_1:-75541635 None:intergenic
GGTAGAAATGGTGACTCCAT+GGG 0.614116 4_1:+75543605 Msa0572610:CDS
GCAACTAAAGTCTGAACACC+AGG 0.614248 4_1:-75543674 None:intergenic
TCGAGGGTCTATATATTAAG+GGG 0.616030 4_1:-75540513 None:intergenic
ACTCCATGGGTGGAACTGGT+TGG 0.620084 4_1:+75543618 Msa0572610:CDS
GATGTGTAGTTCCTGATGCA+AGG 0.621140 4_1:+75543820 Msa0572610:intron
AGTTTCTACCAGAAGAAGCA+AGG 0.621712 4_1:-75544032 None:intergenic
TCTCATTCTGGTCTTCAAGA+CGG 0.621924 4_1:+75540892 Msa0572610:CDS
AGGTTGATCCAAGTAATCCT+GGG 0.622501 4_1:+75541590 Msa0572610:CDS
GGTAAACAAATGGCTAGTAG+TGG 0.623148 4_1:+75541123 Msa0572610:CDS
TGGTGAACTTGGTCATGCCA+TGG 0.624286 4_1:+75541143 Msa0572610:CDS
AAGCTTTATGGTCCAATCTG+GGG 0.625998 4_1:+75545097 Msa0572610:CDS
CTTATAAGCGCGACGGTCGG+TGG 0.626940 4_1:-75541569 None:intergenic
AATTGCTCTGGGCTGCTGCG+TGG 0.627051 4_1:+75543540 Msa0572610:CDS
AATGGATGTAGACAAACTCA+AGG 0.627924 4_1:-75545186 None:intergenic
ACCTAATCTTCTCTATGGAG+AGG 0.629055 4_1:+75541212 Msa0572610:CDS
AGGTCCACCAACAATAGCAC+CGG 0.629259 4_1:-75544507 None:intergenic
GTTAGAGCGACGGAAGACAA+TGG 0.631357 4_1:-75541656 None:intergenic
GGTGTTCTTGCACGACTCAG+TGG 0.631972 4_1:+75544611 Msa0572610:CDS
TGATCCAAGTAATCCTGGGT+CGG 0.632242 4_1:+75541594 Msa0572610:CDS
AATAAGCAGGGTTAGAGCGA+CGG 0.634122 4_1:-75541666 None:intergenic
TCTCCGGCAAGATCCGACCC+AGG 0.640319 4_1:-75541607 None:intergenic
AACCTTATAAGCGCGACGGT+CGG 0.640574 4_1:-75541572 None:intergenic
AATTACCTGAGACTTTGCAA+AGG 0.641567 4_1:-75544097 None:intergenic
TAATGTTGCCAATACCTGGA+AGG 0.644706 4_1:-75544658 None:intergenic
ATTATATAAGATGGAAGGAG+CGG 0.644818 4_1:+75545401 Msa0572610:three_prime_UTR
ATAAACGTTTCTGATGAGGA+AGG 0.645501 4_1:-75540356 None:intergenic
GGAGTTCTCTGGAATAAGCA+GGG 0.647150 4_1:-75541678 None:intergenic
GCAATGAGTTGATCCATGCT+GGG 0.648215 4_1:-75545150 None:intergenic
CCAAAGACAAGTCCATCCCC+AGG 0.649352 4_1:+75544816 Msa0572610:CDS
GTGAAACCTCATAGGCATGA+CGG 0.653358 4_1:-75541702 None:intergenic
ATGTGTAGTTCCTGATGCAA+GGG 0.653769 4_1:+75543821 Msa0572610:intron
GTAACACTGACCACAAGTGT+TGG 0.655008 4_1:+75541527 Msa0572610:CDS
GTTCTTGCACGACTCAGTGG+TGG 0.656295 4_1:+75544614 Msa0572610:CDS
AATGGAAGCAGCAGCCATAG+CGG 0.656899 4_1:-75541638 None:intergenic
CGACTCAGTGGTGGTCATGG+TGG 0.661272 4_1:+75544623 Msa0572610:CDS
TTGGAAACTGAGGAGCTCGA+GGG 0.663033 4_1:-75540529 None:intergenic
TGGAGTCACCATTTCTACCA+AGG 0.666055 4_1:-75543601 None:intergenic
GCCATGGAAGCTGTGAAATG+GGG 0.666792 4_1:+75541159 Msa0572610:CDS
TCAAGACGGTAAAGCTAGTG+GGG 0.667093 4_1:+75540906 Msa0572610:CDS
GGGTGGTTACTATGATGCAG+GGG 0.684312 4_1:+75541032 Msa0572610:CDS
CAAGTGTTGGCAAAGACCGG+AGG 0.684774 4_1:+75541540 Msa0572610:CDS
TTGCAGGTAGATCTAGTGGG+TGG 0.684953 4_1:+75541015 Msa0572610:intron
GATCAACCTTATAAGCGCGA+CGG 0.690106 4_1:-75541576 None:intergenic
AGTACAGGGATTGGAAACTG+AGG 0.690126 4_1:-75540539 None:intergenic
AGAAATGGTGACTCCATGGG+TGG 0.695548 4_1:+75543608 Msa0572610:CDS
AATTTGCAGGTAGATCTAGT+GGG 0.698005 4_1:+75541012 Msa0572610:intron
AAGGTAGTCAGAATAGACAG+TGG 0.699089 4_1:-75544013 None:intergenic
AATTAAGGAGAGAATCCTTG+CGG 0.704680 4_1:-75540599 None:intergenic
AAGTACTACAGATCCATCAG+TGG 0.711623 4_1:+75543416 Msa0572610:CDS
AATATTCAGAAGACACCTGG+TGG 0.722107 4_1:+75543931 Msa0572610:CDS
AAACCTCATAGGCATGACGG+AGG 0.739487 4_1:-75541699 None:intergenic
CCTCAAAGAGTTCACCACAG+AGG 0.741024 4_1:+75544383 Msa0572610:CDS
ACACAATGGATGAACCTCTG+TGG 0.780143 4_1:-75544397 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTATTTTGTTTTTTATTT+TGG - chr4_1:75540396-75540415 None:intergenic 10.0%
!!! TTTAATTATTTATCTGTTTT+TGG + chr4_1:75541764-75541783 Msa0572610:intron 10.0%
!!! AAAAAACTTATCTTTATTTT+TGG + chr4_1:75542115-75542134 Msa0572610:intron 10.0%
!! TAAAAATAAACTAAAATCTT+TGG - chr4_1:75542163-75542182 None:intergenic 10.0%
!! AAAAAACTAGAAAACAAAAA+AGG - chr4_1:75541284-75541303 None:intergenic 15.0%
!! TGATAAAAATAAAAAAGTTG+TGG + chr4_1:75542497-75542516 Msa0572610:intron 15.0%
!!! ATAAAATTTACAATTTGCTT+TGG - chr4_1:75542524-75542543 None:intergenic 15.0%
!! TGCATTTAATTATTCATTTA+TGG + chr4_1:75543014-75543033 Msa0572610:intron 15.0%
!!! CAATAATTGAATTTTTGTAT+TGG - chr4_1:75543475-75543494 None:intergenic 15.0%
!!! AATAATTTTAATGATTGGAA+TGG - chr4_1:75544155-75544174 None:intergenic 15.0%
!!! CCTTAAATAATTTTAATGAT+TGG - chr4_1:75544160-75544179 None:intergenic 15.0%
!! CCAATCATTAAAATTATTTA+AGG + chr4_1:75544157-75544176 Msa0572610:intron 15.0%
!! AATAGATAGATTATATAAGA+TGG + chr4_1:75545392-75545411 Msa0572610:three_prime_UTR 15.0%
!!! TTTTATTTTGGATTTTGAAG+TGG - chr4_1:75540384-75540403 None:intergenic 20.0%
!! ATGAATGAATGAATTTGAAA+AGG - chr4_1:75540945-75540964 None:intergenic 20.0%
!!! TTTTATACAGTTACTCATTT+TGG + chr4_1:75540982-75541001 Msa0572610:intron 20.0%
!! TAATATACTACTAGTATTCA+TGG + chr4_1:75541343-75541362 Msa0572610:intron 20.0%
!! AATATACTACTAGTATTCAT+GGG + chr4_1:75541344-75541363 Msa0572610:intron 20.0%
!! AACTTGAAACTAATACTAAT+AGG + chr4_1:75541940-75541959 Msa0572610:intron 20.0%
!!! TGTACAAAACGTATTTTTAT+GGG - chr4_1:75542310-75542329 None:intergenic 20.0%
!!! TTTTTATCATTATTATGGGT+TGG - chr4_1:75542486-75542505 None:intergenic 20.0%
!! AAGGAAAAGTAAAAAGAAAA+TGG - chr4_1:75542761-75542780 None:intergenic 20.0%
!!! TTCTTTTTACTTTTCCTTTT+TGG + chr4_1:75542763-75542782 Msa0572610:intron 20.0%
!!! TCTTTTTACTTTTCCTTTTT+GGG + chr4_1:75542764-75542783 Msa0572610:intron 20.0%
!! CTATACTATCACATTAATAT+TGG + chr4_1:75542891-75542910 Msa0572610:intron 20.0%
!! ATTAATTAAATCAACCTACA+AGG - chr4_1:75543193-75543212 None:intergenic 20.0%
!! TTAATATTAAGCTCTTCTAA+TGG - chr4_1:75543223-75543242 None:intergenic 20.0%
!! GAATGTTAATAATTGAATGT+CGG + chr4_1:75543498-75543517 Msa0572610:intron 20.0%
!!! TGTATTTTTTTCTAAAGCTT+TGG + chr4_1:75545593-75545612 Msa0572610:three_prime_UTR 20.0%
!!! ATAGTATTATGTTTTTATGC+TGG + chr4_1:75545680-75545699 Msa0572610:three_prime_UTR 20.0%
!!! AAAATTTGTTGAATGCAGTT+AGG - chr4_1:75540699-75540718 None:intergenic 25.0%
!! TGCATTCAACAAATTTTTCA+TGG + chr4_1:75540702-75540721 Msa0572610:exon 25.0%
! CATTGAATATGGTAAACAAA+TGG + chr4_1:75541113-75541132 Msa0572610:CDS 25.0%
!!! AAGTGTCTTTTTATTTTCCA+AGG + chr4_1:75541373-75541392 Msa0572610:intron 25.0%
! AAGAATGATGTTATTGTCTT+TGG + chr4_1:75541479-75541498 Msa0572610:intron 25.0%
! GATAAATAAAAGATGAAGCA+TGG + chr4_1:75541860-75541879 Msa0572610:intron 25.0%
!! AGGATGGAGATAATATTTTT+AGG + chr4_1:75542282-75542301 Msa0572610:intron 25.0%
!!! GGATGGAGATAATATTTTTA+GGG + chr4_1:75542283-75542302 Msa0572610:intron 25.0%
!!! GTGTACAAAACGTATTTTTA+TGG - chr4_1:75542311-75542330 None:intergenic 25.0%
! AAGATGACAAAAGAAAAAGT+GGG - chr4_1:75542350-75542369 None:intergenic 25.0%
! GAAGTAATATAAAGGAGAAA+TGG - chr4_1:75542464-75542483 None:intergenic 25.0%
! AAAAGAGAAAAAAGAAAGAC+CGG + chr4_1:75542557-75542576 Msa0572610:intron 25.0%
!! AATCGAATTTACTCAGTTTT+CGG + chr4_1:75543122-75543141 Msa0572610:intron 25.0%
! ATCTAACAACCAATATTACT+TGG + chr4_1:75543574-75543593 Msa0572610:CDS 25.0%
! AGAAAAAAAAGATGTTACCT+TGG - chr4_1:75543699-75543718 None:intergenic 25.0%
! CATGTATTATCGAATATATG+TGG + chr4_1:75543773-75543792 Msa0572610:intron 25.0%
! TGTTTGAAAAATATCTGCAA+AGG + chr4_1:75543866-75543885 Msa0572610:CDS 25.0%
! CAAAGTTGAATTAAATGAGA+TGG - chr4_1:75544127-75544146 None:intergenic 25.0%
! TCACATTTAATATGAAGTGT+TGG + chr4_1:75544240-75544259 Msa0572610:intron 25.0%
!! TGCGTTTAAAATTAATCTTC+AGG + chr4_1:75544295-75544314 Msa0572610:intron 25.0%
!! GTTTAAAATTAATCTTCAGG+TGG + chr4_1:75544298-75544317 Msa0572610:intron 25.0%
! TTCATAGTTCTTTCTTTCAT+CGG - chr4_1:75544552-75544571 None:intergenic 25.0%
! AAAGATTTATTTATAGCAGG+AGG - chr4_1:75544700-75544719 None:intergenic 25.0%
! CCAAAAGATTTATTTATAGC+AGG - chr4_1:75544703-75544722 None:intergenic 25.0%
!! CCTGCTATAAATAAATCTTT+TGG + chr4_1:75544700-75544719 Msa0572610:intron 25.0%
!!! ATCGATTTGGTTTAAAAAGT+CGG + chr4_1:75545261-75545280 Msa0572610:three_prime_UTR 25.0%
! AAAATACACAAGAGAAGAAA+AGG - chr4_1:75545350-75545369 None:intergenic 25.0%
! GATAGATTATATAAGATGGA+AGG + chr4_1:75545396-75545415 Msa0572610:three_prime_UTR 25.0%
! ACTGTATATAAGTTGTAAAG+CGG - chr4_1:75545477-75545496 None:intergenic 25.0%
! AATGAACTTCTTAACATGTT+AGG + chr4_1:75545557-75545576 Msa0572610:three_prime_UTR 25.0%
! TAGCACAAACTGTTTATATA+TGG - chr4_1:75545661-75545680 None:intergenic 25.0%
GGAAGTAAAAGAAAAAACAG+AGG - chr4_1:75540757-75540776 None:intergenic 30.0%
!! TTTTGGTTGTTGAAATTTGC+AGG + chr4_1:75540999-75541018 Msa0572610:intron 30.0%
ATTGTAACAGTAAATGCCAT+TGG - chr4_1:75541078-75541097 None:intergenic 30.0%
TTACTGTTACAATGATGTCA+TGG + chr4_1:75541085-75541104 Msa0572610:CDS 30.0%
! TCATGGAGTATCATTGAATA+TGG + chr4_1:75541102-75541121 Msa0572610:CDS 30.0%
CAAATTCAACTTTAACTCCT+TGG - chr4_1:75541393-75541412 None:intergenic 30.0%
CAAGGAGTTAAAGTTGAATT+TGG + chr4_1:75541391-75541410 Msa0572610:intron 30.0%
!! TCTTTGGCATTTTGACAAAT+AGG + chr4_1:75541495-75541514 Msa0572610:intron 30.0%
!!! TGTTTTTGGTTAACAAGTTG+TGG + chr4_1:75541778-75541797 Msa0572610:intron 30.0%
TGAAACTAATACTAATAGGC+AGG + chr4_1:75541944-75541963 Msa0572610:intron 30.0%
TTTGGAAGTAGATGAGATAT+TGG + chr4_1:75542133-75542152 Msa0572610:intron 30.0%
! AAATACGTTTTGTACACTTG+TGG + chr4_1:75542314-75542333 Msa0572610:intron 30.0%
GAAGATGACAAAAGAAAAAG+TGG - chr4_1:75542351-75542370 None:intergenic 30.0%
AAAGGAGAAATGGTTAAATG+AGG - chr4_1:75542454-75542473 None:intergenic 30.0%
!! ATGGGTTGGAAGTAATATAA+AGG - chr4_1:75542472-75542491 None:intergenic 30.0%
AAAGAGAAAAAAGAAAGACC+GGG + chr4_1:75542558-75542577 Msa0572610:intron 30.0%
CACACAGATATCAATATGTA+CGG - chr4_1:75542635-75542654 None:intergenic 30.0%
TTACACTTATCCCATTTGTT+TGG + chr4_1:75542793-75542812 Msa0572610:intron 30.0%
ATGAGTGATACCAAACAAAT+GGG - chr4_1:75542806-75542825 None:intergenic 30.0%
AATGAGTGATACCAAACAAA+TGG - chr4_1:75542807-75542826 None:intergenic 30.0%
ATTATTTACACTACCACAAC+TGG + chr4_1:75542828-75542847 Msa0572610:intron 30.0%
TTATTTACACTACCACAACT+GGG + chr4_1:75542829-75542848 Msa0572610:intron 30.0%
AGTGTAAAAGGTTGTAATAG+AGG - chr4_1:75542940-75542959 None:intergenic 30.0%
!! TTTCTGTCATTGTTTCTGAT+AGG + chr4_1:75542978-75542997 Msa0572610:intron 30.0%
! ATCGAATTTACTCAGTTTTC+GGG + chr4_1:75543123-75543142 Msa0572610:intron 30.0%
!! ATTGCAGTTGTTTGATTTTG+CGG + chr4_1:75543349-75543368 Msa0572610:intron 30.0%
!! AAGTGTTTCTAGTTCAATTG+TGG + chr4_1:75543448-75543467 Msa0572610:intron 30.0%
CAAGGTAATCCAAGTAATAT+TGG - chr4_1:75543586-75543605 None:intergenic 30.0%
CAATATTACTTGGATTACCT+TGG + chr4_1:75543584-75543603 Msa0572610:CDS 30.0%
GCAAATGACTGAATTTAGTT+GGG + chr4_1:75543640-75543659 Msa0572610:CDS 30.0%
AATGCATTGTTCAAACACAT+TGG + chr4_1:75543739-75543758 Msa0572610:intron 30.0%
!! TGCAGATATTTTTCAAACAC+AGG - chr4_1:75543865-75543884 None:intergenic 30.0%
TATTTCATGTGTTCATGCAT+TGG + chr4_1:75543895-75543914 Msa0572610:CDS 30.0%
CTTCATATTAAATGTGAGTC+AGG - chr4_1:75544237-75544256 None:intergenic 30.0%
GGTGATAGTAAAAGTAATTG+CGG + chr4_1:75544721-75544740 Msa0572610:intron 30.0%
GTTTGGTATATAGTAGCATA+TGG + chr4_1:75544843-75544862 Msa0572610:intron 30.0%
!! TTGATCTCAACATGTCATTT+TGG - chr4_1:75544908-75544927 None:intergenic 30.0%
TTGAGATCAAAATCTAAGTG+AGG + chr4_1:75544918-75544937 Msa0572610:intron 30.0%
! TTTTCTGCTGAATGGAAATT+GGG - chr4_1:75544973-75544992 None:intergenic 30.0%
! ATTTTCTGCTGAATGGAAAT+TGG - chr4_1:75544974-75544993 None:intergenic 30.0%
CTTTCAATATCCAAGCTTTA+TGG + chr4_1:75545085-75545104 Msa0572610:CDS 30.0%
ATTATATAAGATGGAAGGAG+CGG + chr4_1:75545401-75545420 Msa0572610:three_prime_UTR 30.0%
ATTCCAACTTGAGATATATG+AGG + chr4_1:75545756-75545775 Msa0572610:three_prime_UTR 30.0%
TTGAGATATATGAGGTCTAA+TGG + chr4_1:75545764-75545783 Msa0572610:three_prime_UTR 30.0%
ATAAACGTTTCTGATGAGGA+AGG - chr4_1:75540359-75540378 None:intergenic 35.0%
TCGAGGGTCTATATATTAAG+GGG - chr4_1:75540516-75540535 None:intergenic 35.0%
CTCGAGGGTCTATATATTAA+GGG - chr4_1:75540517-75540536 None:intergenic 35.0%
AATTAAGGAGAGAATCCTTG+CGG - chr4_1:75540602-75540621 None:intergenic 35.0%
AGGATTCTCTCCTTAATTAG+CGG + chr4_1:75540604-75540623 Msa0572610:five_prime_UTR 35.0%
TCGTATAATCCCGCTAATTA+AGG - chr4_1:75540617-75540636 None:intergenic 35.0%
CATGAAACTCTTTGGTTATG+AGG - chr4_1:75540868-75540887 None:intergenic 35.0%
CTCATAACCAAAGAGTTTCA+TGG + chr4_1:75540866-75540885 Msa0572610:CDS 35.0%
AAATTTGCAGGTAGATCTAG+TGG + chr4_1:75541011-75541030 Msa0572610:intron 35.0%
AATTTGCAGGTAGATCTAGT+GGG + chr4_1:75541012-75541031 Msa0572610:intron 35.0%
CAGGGGATAATGTGAAATTT+GGG + chr4_1:75541049-75541068 Msa0572610:CDS 35.0%
! TGTGAAATTTGGGTTACCAA+TGG + chr4_1:75541059-75541078 Msa0572610:CDS 35.0%
!! TGGCATTTTGACAAATAGGT+AGG + chr4_1:75541499-75541518 Msa0572610:intron 35.0%
TTTGACAAATAGGTAGGAGA+TGG + chr4_1:75541505-75541524 Msa0572610:intron 35.0%
TAACAAGTTGTGGTAGTAGT+AGG + chr4_1:75541788-75541807 Msa0572610:intron 35.0%
CTGATCATAGCGACAAATAT+TGG + chr4_1:75541906-75541925 Msa0572610:intron 35.0%
AGCGACAAATATTGGTGAAA+CGG + chr4_1:75541914-75541933 Msa0572610:intron 35.0%
TAGTGTACCACTGAAAAAGT+AGG + chr4_1:75542259-75542278 Msa0572610:intron 35.0%
GAACTCTTGCTCAATAAAGT+TGG - chr4_1:75542377-75542396 None:intergenic 35.0%
AGCAAGAGTTCACTCAATTT+AGG + chr4_1:75542386-75542405 Msa0572610:intron 35.0%
CAACTAAACAAGTGTAGAAG+AGG + chr4_1:75542422-75542441 Msa0572610:intron 35.0%
CGTACATATTGATATCTGTG+TGG + chr4_1:75542633-75542652 Msa0572610:intron 35.0%
TGTGATGTGAATCTCTTCAA+GGG - chr4_1:75542677-75542696 None:intergenic 35.0%
AGTGTAATTTCGACCCAAAA+AGG - chr4_1:75542780-75542799 None:intergenic 35.0%
!! AATATCCATGTTGATGGTTG+CGG - chr4_1:75542864-75542883 None:intergenic 35.0%
TCAAGCAATATCCATGTTGA+TGG - chr4_1:75542870-75542889 None:intergenic 35.0%
! CAGCATTGAGATAGTGTAAA+AGG - chr4_1:75542952-75542971 None:intergenic 35.0%
TCAGAAACAATGACAGAAAC+AGG - chr4_1:75542977-75542996 None:intergenic 35.0%
TATGGCTATAGTTAGAGACT+TGG + chr4_1:75543032-75543051 Msa0572610:intron 35.0%
! CAGAGACAAATCAGTTTTAC+TGG - chr4_1:75543316-75543335 None:intergenic 35.0%
!! CAGTAAAACTGATTTGTCTC+TGG + chr4_1:75543314-75543333 Msa0572610:intron 35.0%
! GATTTTGCGGATAAATACAG+AGG + chr4_1:75543362-75543381 Msa0572610:CDS 35.0%
TTGGATTACCTTGGTAGAAA+TGG + chr4_1:75543593-75543612 Msa0572610:CDS 35.0%
GGCAAATGACTGAATTTAGT+TGG + chr4_1:75543639-75543658 Msa0572610:CDS 35.0%
ATGTGTTCATGCATTGGAAA+GGG + chr4_1:75543901-75543920 Msa0572610:CDS 35.0%
TCCATCTTTGACGGTATATT+AGG - chr4_1:75543957-75543976 None:intergenic 35.0%
AGAATAGACAGTGGCTAAAA+AGG - chr4_1:75544007-75544026 None:intergenic 35.0%
AATTACCTGAGACTTTGCAA+AGG - chr4_1:75544100-75544119 None:intergenic 35.0%
ACAAGTTACATGGTTGGATA+TGG + chr4_1:75544350-75544369 Msa0572610:CDS 35.0%
TTCATCCATTGTGTCAATCA+AGG + chr4_1:75544406-75544425 Msa0572610:CDS 35.0%
!! ATTAGCCTTGATTGACACAA+TGG - chr4_1:75544414-75544433 None:intergenic 35.0%
AGTAACACCAATGTACTAAC+CGG + chr4_1:75544488-75544507 Msa0572610:CDS 35.0%
!! TATAAGAGGAGCATTGTTGT+AGG - chr4_1:75544591-75544610 None:intergenic 35.0%
TACAACAATGCTCCTCTTAT+AGG + chr4_1:75544590-75544609 Msa0572610:CDS 35.0%
TTTGGTGAATGAATGTTGCT+TGG - chr4_1:75544796-75544815 None:intergenic 35.0%
TATATACCAAACAGTACCTG+GGG - chr4_1:75544835-75544854 None:intergenic 35.0%
CTATATACCAAACAGTACCT+GGG - chr4_1:75544836-75544855 None:intergenic 35.0%
ACTATATACCAAACAGTACC+TGG - chr4_1:75544837-75544856 None:intergenic 35.0%
!!! ACTTCTCTTTTTCAGCTTCA+TGG + chr4_1:75544942-75544961 Msa0572610:intron 35.0%
ATTGAGAGACTTGAGATTCT+TGG - chr4_1:75545065-75545084 None:intergenic 35.0%
ATTCATATACATTCCCAGCA+TGG + chr4_1:75545137-75545156 Msa0572610:CDS 35.0%
AATGGATGTAGACAAACTCA+AGG - chr4_1:75545189-75545208 None:intergenic 35.0%
TTGTAAAGCGGATAAGAAAG+AGG - chr4_1:75545465-75545484 None:intergenic 35.0%
GAACTTCTTAACATGTTAGG+AGG + chr4_1:75545560-75545579 Msa0572610:three_prime_UTR 35.0%
AGACCTCATATATCTCAAGT+TGG - chr4_1:75545762-75545781 None:intergenic 35.0%
GGCTATAAACGTTTCTGATG+AGG - chr4_1:75540363-75540382 None:intergenic 40.0%
! TTAAGGGGAAGAGTGTGAAA+AGG - chr4_1:75540501-75540520 None:intergenic 40.0%
GCTCGAGGGTCTATATATTA+AGG - chr4_1:75540518-75540537 None:intergenic 40.0%
! AGAGAGAAGAGAAGAGTACA+GGG - chr4_1:75540556-75540575 None:intergenic 40.0%
! GAAACTTCTCTTTTTCCGCA+AGG + chr4_1:75540584-75540603 Msa0572610:five_prime_UTR 40.0%
GGATTCTCTCCTTAATTAGC+GGG + chr4_1:75540605-75540624 Msa0572610:five_prime_UTR 40.0%
CTTCCATCATTATCCTTTGC+TGG + chr4_1:75540772-75540791 Msa0572610:CDS 40.0%
TAATGCTCTTGCTTAGAGCT+TGG - chr4_1:75540813-75540832 None:intergenic 40.0%
!! TTCTTTGAAGCTCAGAGATC+TGG + chr4_1:75540835-75540854 Msa0572610:CDS 40.0%
GAGATCTCCATGAAACTCTT+TGG - chr4_1:75540876-75540895 None:intergenic 40.0%
GTTTCATGGAGATCTCATTC+TGG + chr4_1:75540880-75540899 Msa0572610:CDS 40.0%
! TCTCATTCTGGTCTTCAAGA+CGG + chr4_1:75540892-75540911 Msa0572610:CDS 40.0%
TTCAAGACGGTAAAGCTAGT+GGG + chr4_1:75540905-75540924 Msa0572610:CDS 40.0%
GCAGGGGATAATGTGAAATT+TGG + chr4_1:75541048-75541067 Msa0572610:CDS 40.0%
GGTAAACAAATGGCTAGTAG+TGG + chr4_1:75541123-75541142 Msa0572610:CDS 40.0%
! CCATAGAGAAGATTAGGTTG+AGG - chr4_1:75541210-75541229 None:intergenic 40.0%
CCTCAACCTAATCTTCTCTA+TGG + chr4_1:75541207-75541226 Msa0572610:CDS 40.0%
ACCTAATCTTCTCTATGGAG+AGG + chr4_1:75541212-75541231 Msa0572610:CDS 40.0%
ACCTCTCCATAGAGAAGATT+AGG - chr4_1:75541216-75541235 None:intergenic 40.0%
! AAGGTTGATCCAAGTAATCC+TGG + chr4_1:75541589-75541608 Msa0572610:CDS 40.0%
! AGGTTGATCCAAGTAATCCT+GGG + chr4_1:75541590-75541609 Msa0572610:CDS 40.0%
! AGTGTTGAGTGAAACCTCAT+AGG - chr4_1:75541713-75541732 None:intergenic 40.0%
! GTTGTGGTAGTAGTAGGTTT+TGG + chr4_1:75541794-75541813 Msa0572610:intron 40.0%
ACTCGGTAGAACTGCATTTA+TGG + chr4_1:75542047-75542066 Msa0572610:intron 40.0%
TGTACCACTGAAAAAGTAGG+AGG + chr4_1:75542262-75542281 Msa0572610:intron 40.0%
!! AACAAAAGTGTCCCTTCACT+AGG - chr4_1:75542592-75542611 None:intergenic 40.0%
! AAGGGACACTTTTGTTGCAA+TGG + chr4_1:75542596-75542615 Msa0572610:intron 40.0%
GTGATGTGAATCTCTTCAAG+GGG - chr4_1:75542676-75542695 None:intergenic 40.0%
GTGTGATGTGAATCTCTTCA+AGG - chr4_1:75542678-75542697 None:intergenic 40.0%
! TACCATTTTGTCATGACACG+TGG + chr4_1:75542718-75542737 Msa0572610:intron 40.0%
ATCCACGTGTCATGACAAAA+TGG - chr4_1:75542723-75542742 None:intergenic 40.0%
ACCAAACACTACTACCTTGT+AGG + chr4_1:75543176-75543195 Msa0572610:intron 40.0%
ACCTACAAGGTAGTAGTGTT+TGG - chr4_1:75543180-75543199 None:intergenic 40.0%
TTCTGTTTCCAGTTTCCACA+TGG + chr4_1:75543288-75543307 Msa0572610:intron 40.0%
!!! TCAGTTTTACTGGTTCCATG+TGG - chr4_1:75543306-75543325 None:intergenic 40.0%
AAGTACTACAGATCCATCAG+TGG + chr4_1:75543416-75543435 Msa0572610:CDS 40.0%
ACTTACATTGTAGCCACTGA+TGG - chr4_1:75543432-75543451 None:intergenic 40.0%
AGTTGGGATGTTAAGTATCC+TGG + chr4_1:75543656-75543675 Msa0572610:CDS 40.0%
TGTTCAGACTTTAGTTGCCA+AGG + chr4_1:75543679-75543698 Msa0572610:CDS 40.0%
! TGTTCAAACACATTGGCTAG+TGG + chr4_1:75543746-75543765 Msa0572610:intron 40.0%
ATGTGTAGTTCCTGATGCAA+GGG + chr4_1:75543821-75543840 Msa0572610:intron 40.0%
CATGTGTTCATGCATTGGAA+AGG + chr4_1:75543900-75543919 Msa0572610:CDS 40.0%
AATATTCAGAAGACACCTGG+TGG + chr4_1:75543931-75543950 Msa0572610:CDS 40.0%
GCCTAATATACCGTCAAAGA+TGG + chr4_1:75543953-75543972 Msa0572610:CDS 40.0%
ATAGACAGTGGCTAAAAAGG+AGG - chr4_1:75544004-75544023 None:intergenic 40.0%
AAGGTAGTCAGAATAGACAG+TGG - chr4_1:75544016-75544035 None:intergenic 40.0%
AGTTTCTACCAGAAGAAGCA+AGG - chr4_1:75544035-75544054 None:intergenic 40.0%
AGAAACTTGAGATGTGCTTC+TGG + chr4_1:75544048-75544067 Msa0572610:CDS 40.0%
!! TGTTGGTGCTACATATTCCA+AGG + chr4_1:75544257-75544276 Msa0572610:intron 40.0%
!! GTTGGTGCTACATATTCCAA+GGG + chr4_1:75544258-75544277 Msa0572610:intron 40.0%
CAAAAATTGATGAGCTCCCT+TGG - chr4_1:75544277-75544296 None:intergenic 40.0%
! CCATGTAACTTGTAGCTCTT+GGG - chr4_1:75544343-75544362 None:intergenic 40.0%
! ACCATGTAACTTGTAGCTCT+TGG - chr4_1:75544344-75544363 None:intergenic 40.0%
AGAGCTACAAGTTACATGGT+TGG + chr4_1:75544344-75544363 Msa0572610:CDS 40.0%
! CCAACACAGCTGACAAATTT+TGG - chr4_1:75544437-75544456 None:intergenic 40.0%
CCAAAATTTGTCAGCTGTGT+TGG + chr4_1:75544434-75544453 Msa0572610:CDS 40.0%
AAATTTGTCAGCTGTGTTGG+AGG + chr4_1:75544437-75544456 Msa0572610:CDS 40.0%
!! AATAGCACCGGTTAGTACAT+TGG - chr4_1:75544498-75544517 None:intergenic 40.0%
GCAAAGTCATCATAAGCATC+AGG - chr4_1:75544530-75544549 None:intergenic 40.0%
TAATGTTGCCAATACCTGGA+AGG - chr4_1:75544661-75544680 None:intergenic 40.0%
ACGATAATGTTGCCAATACC+TGG - chr4_1:75544665-75544684 None:intergenic 40.0%
! GAATGTTGCTTGGTAACAAC+AGG - chr4_1:75544786-75544805 None:intergenic 40.0%
!!! TCTTTTTCAGCTTCATGGTC+AGG + chr4_1:75544947-75544966 Msa0572610:intron 40.0%
! CAAGCTTTATGGTCCAATCT+GGG + chr4_1:75545096-75545115 Msa0572610:CDS 40.0%
! AAGCTTTATGGTCCAATCTG+GGG + chr4_1:75545097-75545116 Msa0572610:CDS 40.0%
AAACCAAATCGATCGTTCTC+AGG - chr4_1:75545254-75545273 None:intergenic 40.0%
TTTAAAAAGTCGGATGCGAG+TGG + chr4_1:75545271-75545290 Msa0572610:three_prime_UTR 40.0%
TTATGCTGGCAATGCTTGTT+TGG + chr4_1:75545694-75545713 Msa0572610:three_prime_UTR 40.0%
AGTACAGGGATTGGAAACTG+AGG - chr4_1:75540542-75540561 None:intergenic 45.0%
! GAAGAGAAGAGTACAGGGAT+TGG - chr4_1:75540551-75540570 None:intergenic 45.0%
! GAGAGAGAAGAGAAGAGTAC+AGG - chr4_1:75540557-75540576 None:intergenic 45.0%
CCACCAGCAAAGGATAATGA+TGG - chr4_1:75540778-75540797 None:intergenic 45.0%
CCATCATTATCCTTTGCTGG+TGG + chr4_1:75540775-75540794 Msa0572610:CDS 45.0%
TTAGAGCTTGGCCATAGTCA+TGG - chr4_1:75540801-75540820 None:intergenic 45.0%
CTTCAAGACGGTAAAGCTAG+TGG + chr4_1:75540904-75540923 Msa0572610:CDS 45.0%
TCAAGACGGTAAAGCTAGTG+GGG + chr4_1:75540906-75540925 Msa0572610:CDS 45.0%
TGGGTGGTTACTATGATGCA+GGG + chr4_1:75541031-75541050 Msa0572610:CDS 45.0%
ATGGCTAGTAGTGGTGAACT+TGG + chr4_1:75541132-75541151 Msa0572610:CDS 45.0%
ATGCCATGGAAGCTGTGAAA+TGG + chr4_1:75541157-75541176 Msa0572610:CDS 45.0%
TGCCATGGAAGCTGTGAAAT+GGG + chr4_1:75541158-75541177 Msa0572610:CDS 45.0%
! GTGAGAAGTGTGAAGTGTGA+AGG - chr4_1:75541249-75541268 None:intergenic 45.0%
GTAACACTGACCACAAGTGT+TGG + chr4_1:75541527-75541546 Msa0572610:CDS 45.0%
GATCAACCTTATAAGCGCGA+CGG - chr4_1:75541579-75541598 None:intergenic 45.0%
TGATCCAAGTAATCCTGGGT+CGG + chr4_1:75541594-75541613 Msa0572610:CDS 45.0%
AATAAGCAGGGTTAGAGCGA+CGG - chr4_1:75541669-75541688 None:intergenic 45.0%
!! GGAGTTCTCTGGAATAAGCA+GGG - chr4_1:75541681-75541700 None:intergenic 45.0%
!! AGGAGTTCTCTGGAATAAGC+AGG - chr4_1:75541682-75541701 None:intergenic 45.0%
GTGAAACCTCATAGGCATGA+CGG - chr4_1:75541705-75541724 None:intergenic 45.0%
ACTAATAGGCAGGCAGTTAC+TGG + chr4_1:75541954-75541973 Msa0572610:intron 45.0%
!!! CCATCCTCCTACTTTTTCAG+TGG - chr4_1:75542269-75542288 None:intergenic 45.0%
CCACTGAAAAAGTAGGAGGA+TGG + chr4_1:75542266-75542285 Msa0572610:intron 45.0%
CTTCACTAGGCATGAAAACC+CGG - chr4_1:75542579-75542598 None:intergenic 45.0%
! GGGTTTTCATGCCTAGTGAA+GGG + chr4_1:75542578-75542597 Msa0572610:intron 45.0%
ATCTCTTCAAGGGGAAGGTT+GGG - chr4_1:75542667-75542686 None:intergenic 45.0%
AATCTCTTCAAGGGGAAGGT+TGG - chr4_1:75542668-75542687 None:intergenic 45.0%
TGTGAATCTCTTCAAGGGGA+AGG - chr4_1:75542672-75542691 None:intergenic 45.0%
ATGACACGTGGATACACTGT+CGG + chr4_1:75542730-75542749 Msa0572610:intron 45.0%
TTTACACTACCACAACTGGG+TGG + chr4_1:75542832-75542851 Msa0572610:intron 45.0%
TACTTCCGCAACCATCAACA+TGG + chr4_1:75542856-75542875 Msa0572610:intron 45.0%
GCACATGACAGCGGAAAAAT+AGG - chr4_1:75542918-75542937 None:intergenic 45.0%
! GTAATAGAGGCACATGACAG+CGG - chr4_1:75542927-75542946 None:intergenic 45.0%
!! TACTGGTTCCATGTGGAAAC+TGG - chr4_1:75543299-75543318 None:intergenic 45.0%
TGGAGTCACCATTTCTACCA+AGG - chr4_1:75543604-75543623 None:intergenic 45.0%
TGGTAGAAATGGTGACTCCA+TGG + chr4_1:75543604-75543623 Msa0572610:CDS 45.0%
GGTAGAAATGGTGACTCCAT+GGG + chr4_1:75543605-75543624 Msa0572610:CDS 45.0%
GCAACTAAAGTCTGAACACC+AGG - chr4_1:75543677-75543696 None:intergenic 45.0%
GATGTGTAGTTCCTGATGCA+AGG + chr4_1:75543820-75543839 Msa0572610:intron 45.0%
CGCAATATTCAGAAGACACC+TGG + chr4_1:75543928-75543947 Msa0572610:CDS 45.0%
GCAGGTTGTTCCATCTTTGA+CGG - chr4_1:75543966-75543985 None:intergenic 45.0%
AGGAACTTGTGGCAAATTGC+AGG - chr4_1:75543984-75544003 None:intergenic 45.0%
GGCTAAAAAGGAGGAACTTG+TGG - chr4_1:75543995-75544014 None:intergenic 45.0%
TCTGACTACCTTGCTTCTTC+TGG + chr4_1:75544024-75544043 Msa0572610:CDS 45.0%
CTTTGCAAAGGAGAGAAGCT+GGG - chr4_1:75544088-75544107 None:intergenic 45.0%
ACTTTGCAAAGGAGAGAAGC+TGG - chr4_1:75544089-75544108 None:intergenic 45.0%
TCTCTCCTTTGCAAAGTCTC+AGG + chr4_1:75544092-75544111 Msa0572610:CDS 45.0%
!! CTTCAGGTGGACTACATTCT+TGG + chr4_1:75544311-75544330 Msa0572610:intron 45.0%
CCCAAGAGCTACAAGTTACA+TGG + chr4_1:75544340-75544359 Msa0572610:CDS 45.0%
CTCTGTGGTGAACTCTTTGA+GGG - chr4_1:75544385-75544404 None:intergenic 45.0%
ACACAATGGATGAACCTCTG+TGG - chr4_1:75544400-75544419 None:intergenic 45.0%
GTGTTGGAGGTTATGCTACT+TGG + chr4_1:75544450-75544469 Msa0572610:CDS 45.0%
!! GTACTAACCGGTGCTATTGT+TGG + chr4_1:75544500-75544519 Msa0572610:CDS 45.0%
CGTGCAAGAACACCTATAAG+AGG - chr4_1:75544605-75544624 None:intergenic 45.0%
GAACTGGAACAGCAACTGTA+AGG - chr4_1:75544758-75544777 None:intergenic 45.0%
GTAACAACAGGCTTACGAAC+TGG - chr4_1:75544774-75544793 None:intergenic 45.0%
! GGATGGACTTGTCTTTGGTT+TGG - chr4_1:75544814-75544833 None:intergenic 45.0%
!! GCTGGTCATTTTCTGCTGAA+TGG - chr4_1:75544981-75545000 None:intergenic 45.0%
AGCAGAAAATGACCAGCTCT+TGG + chr4_1:75544984-75545003 Msa0572610:CDS 45.0%
GCAGAAAATGACCAGCTCTT+GGG + chr4_1:75544985-75545004 Msa0572610:CDS 45.0%
CCAGATTGGACCATAAAGCT+TGG - chr4_1:75545098-75545117 None:intergenic 45.0%
! CCAAGCTTTATGGTCCAATC+TGG + chr4_1:75545095-75545114 Msa0572610:CDS 45.0%
AACTTTGTGAGTCCCCAGAT+TGG - chr4_1:75545112-75545131 None:intergenic 45.0%
ATCTGGGGACTCACAAAGTT+TGG + chr4_1:75545112-75545131 Msa0572610:CDS 45.0%
!! GCAATGAGTTGATCCATGCT+GGG - chr4_1:75545153-75545172 None:intergenic 45.0%
! AACTCAAGGCTTTTACCTGC+TGG - chr4_1:75545175-75545194 None:intergenic 45.0%
CTCAGTTGCGAACTACTCAT+TGG + chr4_1:75545228-75545247 Msa0572610:CDS 45.0%
!! AATTACATTAAATAATTTAA+TGG - chr4_1:75540434-75540453 None:intergenic 5.0%
!!! TTTATTTTTATCATTATTAT+GGG - chr4_1:75542490-75542509 None:intergenic 5.0%
!!! TTTTATTTTTATCATTATTA+TGG - chr4_1:75542491-75542510 None:intergenic 5.0%
! GGGGAAGAGTGTGAAAAGGA+AGG - chr4_1:75540497-75540516 None:intergenic 50.0%
TTGGAAACTGAGGAGCTCGA+GGG - chr4_1:75540532-75540551 None:intergenic 50.0%
ATTGGAAACTGAGGAGCTCG+AGG - chr4_1:75540533-75540552 None:intergenic 50.0%
ATAGTCATGGCCACCAGCAA+AGG - chr4_1:75540788-75540807 None:intergenic 50.0%
TTTGCTGGTGGCCATGACTA+TGG + chr4_1:75540787-75540806 Msa0572610:CDS 50.0%
TTGCAGGTAGATCTAGTGGG+TGG + chr4_1:75541015-75541034 Msa0572610:intron 50.0%
GTGGGTGGTTACTATGATGC+AGG + chr4_1:75541030-75541049 Msa0572610:CDS 50.0%
GGGTGGTTACTATGATGCAG+GGG + chr4_1:75541032-75541051 Msa0572610:CDS 50.0%
TGGTGAACTTGGTCATGCCA+TGG + chr4_1:75541143-75541162 Msa0572610:CDS 50.0%
GCCATGGAAGCTGTGAAATG+GGG + chr4_1:75541159-75541178 Msa0572610:CDS 50.0%
ACCCCATTTCACAGCTTCCA+TGG - chr4_1:75541163-75541182 None:intergenic 50.0%
!! CCACAAGTGTTGGCAAAGAC+CGG + chr4_1:75541537-75541556 Msa0572610:CDS 50.0%
AACCTTATAAGCGCGACGGT+CGG - chr4_1:75541575-75541594 None:intergenic 50.0%
AGATCCGACCCAGGATTACT+TGG - chr4_1:75541601-75541620 None:intergenic 50.0%
AATGGAAGCAGCAGCCATAG+CGG - chr4_1:75541641-75541660 None:intergenic 50.0%
GTTAGAGCGACGGAAGACAA+TGG - chr4_1:75541659-75541678 None:intergenic 50.0%
AAACCTCATAGGCATGACGG+AGG - chr4_1:75541702-75541721 None:intergenic 50.0%
TGCCACCAAATTGAGCTGCA+TGG + chr4_1:75542018-75542037 Msa0572610:intron 50.0%
GCCACCAAATTGAGCTGCAT+GGG + chr4_1:75542019-75542038 Msa0572610:intron 50.0%
ACCCATGCAGCTCAATTTGG+TGG - chr4_1:75542023-75542042 None:intergenic 50.0%
CCAAATTGAGCTGCATGGGT+CGG + chr4_1:75542023-75542042 Msa0572610:intron 50.0%
! CGGGTTTTCATGCCTAGTGA+AGG + chr4_1:75542577-75542596 Msa0572610:intron 50.0%
AGAAATGGTGACTCCATGGG+TGG + chr4_1:75543608-75543627 Msa0572610:CDS 50.0%
TTCCTGATGCAAGGGAAAGC+TGG + chr4_1:75543829-75543848 Msa0572610:CDS 50.0%
TGACGGTATATTAGGCCACC+AGG - chr4_1:75543949-75543968 None:intergenic 50.0%
AGGAGAGAAGCTGGGAAGAA+GGG - chr4_1:75544080-75544099 None:intergenic 50.0%
AAGGAGAGAAGCTGGGAAGA+AGG - chr4_1:75544081-75544100 None:intergenic 50.0%
CCTCTGTGGTGAACTCTTTG+AGG - chr4_1:75544386-75544405 None:intergenic 50.0%
CCTCAAAGAGTTCACCACAG+AGG + chr4_1:75544383-75544402 Msa0572610:CDS 50.0%
!! CTAACCGGTGCTATTGTTGG+TGG + chr4_1:75544503-75544522 Msa0572610:CDS 50.0%
AGGTCCACCAACAATAGCAC+CGG - chr4_1:75544510-75544529 None:intergenic 50.0%
!! GGAGCATTGTTGTAGGTTGC+TGG - chr4_1:75544584-75544603 None:intergenic 50.0%
AACCAGCTCCTTCCAGGTAT+TGG + chr4_1:75544650-75544669 Msa0572610:intron 50.0%
TACCAAACAGTACCTGGGGA+TGG - chr4_1:75544831-75544850 None:intergenic 50.0%
! ACCAGCTCTTGGGTTGCAAA+TGG + chr4_1:75544995-75545014 Msa0572610:CDS 50.0%
TCCATTTGCAACCCAAGAGC+TGG - chr4_1:75544999-75545018 None:intergenic 50.0%
!! GGCAATGAGTTGATCCATGC+TGG - chr4_1:75545154-75545173 None:intergenic 50.0%
TGGATCAACTCATTGCCAGC+AGG + chr4_1:75545157-75545176 Msa0572610:CDS 50.0%
CATCTGCTGGAGTGGTAGAA+TGG - chr4_1:75545207-75545226 None:intergenic 50.0%
AACTGAGACATCTGCTGGAG+TGG - chr4_1:75545215-75545234 None:intergenic 50.0%
TTCGCAACTGAGACATCTGC+TGG - chr4_1:75545220-75545239 None:intergenic 50.0%
TGGCCTGAGAACGATCGATT+TGG + chr4_1:75545248-75545267 Msa0572610:exon 50.0%
CCGGTCTTTGCCAACACTTG+TGG - chr4_1:75541540-75541559 None:intergenic 55.0%
!! CAAGTGTTGGCAAAGACCGG+AGG + chr4_1:75541540-75541559 Msa0572610:CDS 55.0%
AATCCTGGGTCGGATCTTGC+CGG + chr4_1:75541604-75541623 Msa0572610:CDS 55.0%
ACTCCTCCGTCATGCCTATG+AGG + chr4_1:75541696-75541715 Msa0572610:CDS 55.0%
CCGACCCATGCAGCTCAATT+TGG - chr4_1:75542026-75542045 None:intergenic 55.0%
CGGAAGTAACCACCCAGTTG+TGG - chr4_1:75542844-75542863 None:intergenic 55.0%
ATGTCGGTAATTGTGCGCGC+AGG + chr4_1:75543514-75543533 Msa0572610:intron 55.0%
ACTCCATGGGTGGAACTGGT+TGG + chr4_1:75543618-75543637 Msa0572610:CDS 55.0%
TTGCCAACCAGTTCCACCCA+TGG - chr4_1:75543624-75543643 None:intergenic 55.0%
CACCAGCTTTCCCTTGCATC+AGG - chr4_1:75543834-75543853 None:intergenic 55.0%
GGTGTTCTTGCACGACTCAG+TGG + chr4_1:75544611-75544630 Msa0572610:CDS 55.0%
GTTCTTGCACGACTCAGTGG+TGG + chr4_1:75544614-75544633 Msa0572610:CDS 55.0%
GGCTATAACCAGCTCCTTCC+AGG + chr4_1:75544644-75544663 Msa0572610:CDS 55.0%
TGCCAATACCTGGAAGGAGC+TGG - chr4_1:75544655-75544674 None:intergenic 55.0%
! CCTGGGGATGGACTTGTCTT+TGG - chr4_1:75544819-75544838 None:intergenic 55.0%
CCAAAGACAAGTCCATCCCC+AGG + chr4_1:75544816-75544835 Msa0572610:CDS 55.0%
! GTCCATCCCCAGGTACTGTT+TGG + chr4_1:75544826-75544845 Msa0572610:intron 55.0%
ATGGAAGGAGCGGTGCAGAA+AGG + chr4_1:75545411-75545430 Msa0572610:three_prime_UTR 55.0%
CGGTCGGTGGTCATATCCTC+CGG - chr4_1:75541559-75541578 None:intergenic 60.0%
CTTATAAGCGCGACGGTCGG+TGG - chr4_1:75541572-75541591 None:intergenic 60.0%
CACCGACCGTCGCGCTTATA+AGG + chr4_1:75541570-75541589 Msa0572610:CDS 60.0%
! GGCATGACGGAGGAGTTCTC+TGG - chr4_1:75541692-75541711 None:intergenic 60.0%
GAGCTGCATGGGTCGGTACT+CGG + chr4_1:75542030-75542049 Msa0572610:intron 60.0%
CGCGCAGGACGAATTGCTCT+GGG + chr4_1:75543529-75543548 Msa0572610:intron 60.0%
! AATTGCTCTGGGCTGCTGCG+TGG + chr4_1:75543540-75543559 Msa0572610:CDS 60.0%
GGTGACTCCATGGGTGGAAC+TGG + chr4_1:75543614-75543633 Msa0572610:CDS 60.0%
GCACGACTCAGTGGTGGTCA+TGG + chr4_1:75544620-75544639 Msa0572610:CDS 60.0%
CGACTCAGTGGTGGTCATGG+TGG + chr4_1:75544623-75544642 Msa0572610:CDS 60.0%
TCTCCGGCAAGATCCGACCC+AGG - chr4_1:75541610-75541629 None:intergenic 65.0%
CATAGCGGCGGCGGTTTCTC+CGG - chr4_1:75541626-75541645 None:intergenic 65.0%
GGAAGCAGCAGCCATAGCGG+CGG - chr4_1:75541638-75541657 None:intergenic 65.0%
GCGCGCAGGACGAATTGCTC+TGG + chr4_1:75543528-75543547 Msa0572610:intron 65.0%
CGGAGAAACCGCCGCCGCTA+TGG + chr4_1:75541624-75541643 Msa0572610:CDS 70.0%
AGCAGCAGCCATAGCGGCGG+CGG - chr4_1:75541635-75541654 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75540346 75545846 75540346 ID=Msa0572610;Name=Msa0572610
chr4_1 mRNA 75540346 75545846 75540346 ID=Msa0572610-mRNA-1;Parent=Msa0572610;Name=Msa0572610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=375|1|1|1|1|1|9|591|627
chr4_1 exon 75540346 75540927 75540346 ID=Msa0572610-mRNA-1:exon:26154;Parent=Msa0572610-mRNA-1
chr4_1 exon 75541021 75541233 75541021 ID=Msa0572610-mRNA-1:exon:26155;Parent=Msa0572610-mRNA-1
chr4_1 exon 75541517 75541717 75541517 ID=Msa0572610-mRNA-1:exon:26156;Parent=Msa0572610-mRNA-1
chr4_1 exon 75543356 75543445 75543356 ID=Msa0572610-mRNA-1:exon:26157;Parent=Msa0572610-mRNA-1
chr4_1 exon 75543536 75543700 75543536 ID=Msa0572610-mRNA-1:exon:26158;Parent=Msa0572610-mRNA-1
chr4_1 exon 75543829 75544113 75543829 ID=Msa0572610-mRNA-1:exon:26159;Parent=Msa0572610-mRNA-1
chr4_1 exon 75544317 75544665 75544317 ID=Msa0572610-mRNA-1:exon:26160;Parent=Msa0572610-mRNA-1
chr4_1 exon 75544763 75544837 75544763 ID=Msa0572610-mRNA-1:exon:26161;Parent=Msa0572610-mRNA-1
chr4_1 exon 75544957 75545846 75544957 ID=Msa0572610-mRNA-1:exon:26162;Parent=Msa0572610-mRNA-1
chr4_1 five_prime_UTR 75540346 75540720 75540346 ID=Msa0572610-mRNA-1:five_prime_utr;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75540721 75540927 75540721 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75541021 75541233 75541021 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75541517 75541717 75541517 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75543356 75543445 75543356 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75543536 75543700 75543536 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75543829 75544113 75543829 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75544317 75544665 75544317 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75544763 75544837 75544763 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 CDS 75544957 75545255 75544957 ID=Msa0572610-mRNA-1:cds;Parent=Msa0572610-mRNA-1
chr4_1 three_prime_UTR 75545256 75545846 75545256 ID=Msa0572610-mRNA-1:three_prime_utr;Parent=Msa0572610-mRNA-1
Gene Sequence

>Msa0572610

ATGGAAAAGCTAACACAACTCATTTCTATGCTTCCTCTGTTTTTTCTTTTACTTCCATCATTATCCTTTGCTGGTGGCCATGACTATGGCCAAGCTCTAAGCAAGAGCATTATGTTCTTTGAAGCTCAGAGATCTGGTTATCTTCCTCATAACCAAAGAGTTTCATGGAGATCTCATTCTGGTCTTCAAGACGGTAAAGCTAGTGGGGTAGATCTAGTGGGTGGTTACTATGATGCAGGGGATAATGTGAAATTTGGGTTACCAATGGCATTTACTGTTACAATGATGTCATGGAGTATCATTGAATATGGTAAACAAATGGCTAGTAGTGGTGAACTTGGTCATGCCATGGAAGCTGTGAAATGGGGTACTGATTATTTCATCAAAGCTCATCCTCAACCTAATCTTCTCTATGGAGAGGTAGGAGATGGTAACACTGACCACAAGTGTTGGCAAAGACCGGAGGATATGACCACCGACCGTCGCGCTTATAAGGTTGATCCAAGTAATCCTGGGTCGGATCTTGCCGGAGAAACCGCCGCCGCTATGGCTGCTGCTTCCATTGTCTTCCGTCGCTCTAACCCTGCTTATTCCAGAGAACTCCTCCGTCATGCCTATGAGTTGTTTGATTTTGCGGATAAATACAGAGGCAAATATGATAGCAGCATCACAGTTGCACAGAAGTACTACAGATCCATCAGTGGCTACAATGACGAATTGCTCTGGGCTGCTGCGTGGTTGTATCAAGCATCTAACAACCAATATTACTTGGATTACCTTGGTAGAAATGGTGACTCCATGGGTGGAACTGGTTGGCAAATGACTGAATTTAGTTGGGATGTTAAGTATCCTGGTGTTCAGACTTTAGTTGCCAAGTTCCTGATGCAAGGGAAAGCTGGTGTTCATGCACCTGTGTTTGAAAAATATCTGCAAAGGTCTGAGTATTTCATGTGTTCATGCATTGGAAAGGGTACTCGCAATATTCAGAAGACACCTGGTGGCCTAATATACCGTCAAAGATGGAACAACCTGCAATTTGCCACAAGTTCCTCCTTTTTAGCCACTGTCTATTCTGACTACCTTGCTTCTTCTGGTAGAAACTTGAGATGTGCTTCTGGAAATGTCCCTTCTTCCCAGCTTCTCTCCTTTGCAAAGTCTCAGGTGGACTACATTCTTGGAGACAACCCAAGAGCTACAAGTTACATGGTTGGATATGGAAACAATTACCCTCAAAGAGTTCACCACAGAGGTTCATCCATTGTGTCAATCAAGGCTAATCCAAAATTTGTCAGCTGTGTTGGAGGTTATGCTACTTGGTTTAGCAGCAAAAAAAGTAACACCAATGTACTAACCGGTGCTATTGTTGGTGGACCTGATGCTTATGATGACTTTGCCGATGAAAGAAAGAACTATGAACAAACAGAACCAGCAACCTACAACAATGCTCCTCTTATAGGTGTTCTTGCACGACTCAGTGGTGGTCATGGTGGCTATAACCAGCTCCTTCCAGTTGCTGTTCCAGTTCGTAAGCCTGTTGTTACCAAGCAACATTCATTCACCAAACCAAAGACAAGTCCATCCCCAGCTTCATGGTCAGGCCCAATTTCCATTCAGCAGAAAATGACCAGCTCTTGGGTTGCAAATGGAAGAACTTATTATAGATACTCAACAATTGTGACTAACAAATCAACCAAGAATCTCAAGTCTCTCAATCTTTCAATATCCAAGCTTTATGGTCCAATCTGGGGACTCACAAAGTTTGGTGATTCATATACATTCCCAGCATGGATCAACTCATTGCCAGCAGGTAAAAGCCTTGAGTTTGTCTACATCCATTCTACCACTCCAGCAGATGTCTCAGTTGCGAACTACTCATTGGCCTGA
Protein sequence

>Msa0572610

MEKLTQLISMLPLFFLLLPSLSFAGGHDYGQALSKSIMFFEAQRSGYLPHNQRVSWRSHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMASSGELGHAMEAVKWGTDYFIKAHPQPNLLYGEVGDGNTDHKCWQRPEDMTTDRRAYKVDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSRELLRHAYELFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWQMTEFSWDVKYPGVQTLVAKFLMQGKAGVHAPVFEKYLQRSEYFMCSCIGKGTRNIQKTPGGLIYRQRWNNLQFATSSSFLATVYSDYLASSGRNLRCASGNVPSSQLLSFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRGSSIVSIKANPKFVSCVGGYATWFSSKKSNTNVLTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLSGGHGGYNQLLPVAVPVRKPVVTKQHSFTKPKTSPSPASWSGPISIQQKMTSSWVANGRTYYRYSTIVTNKSTKNLKSLNLSISKLYGPIWGLTKFGDSYTFPAWINSLPAGKSLEFVYIHSTTPADVSVANYSLA*