AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1366430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366430 MtrunA17_Chr7g0269541 97.133 558 11 2 1 554 1 557 0.0 1114
Msa1366430 MtrunA17_Chr8g0345281 50.662 529 239 8 41 553 67 589 1.54e-178 516
Msa1366430 MtrunA17_Chr1g0147051 43.345 586 287 10 4 554 33 608 3.84e-168 490
Msa1366430 MtrunA17_Chr3g0126771 46.970 528 250 7 46 554 82 598 3.09e-166 485
Msa1366430 MtrunA17_Chr4g0011791 47.417 542 247 14 9 549 1 505 4.97e-161 468
Msa1366430 MtrunA17_Chr4g0011771 48.814 506 229 11 46 549 32 509 1.72e-160 467
Msa1366430 MtrunA17_Chr7g0233771 47.992 523 242 10 42 553 51 554 3.17e-160 468
Msa1366430 MtrunA17_Chr7g0233831 45.688 545 272 9 14 549 22 551 4.05e-157 460
Msa1366430 MtrunA17_Chr1g0192331 45.725 538 243 11 31 549 17 524 8.41e-154 451
Msa1366430 MtrunA17_Chr1g0195301 50.625 480 206 9 96 549 77 551 1.17e-153 451
Msa1366430 MtrunA17_Chr1g0195321 50.625 480 206 9 96 549 77 551 1.17e-153 451
Msa1366430 MtrunA17_Chr1g0195331 51.042 480 204 9 96 549 77 551 1.37e-153 451
Msa1366430 MtrunA17_Chr1g0175661 51.277 470 198 10 109 553 95 558 1.77e-153 451
Msa1366430 MtrunA17_Chr8g0391291 44.808 520 255 8 45 549 33 535 1.04e-151 446
Msa1366430 MtrunA17_Chr8g0391311 45.541 527 241 10 45 549 35 537 1.21e-151 446
Msa1366430 MtrunA17_Chr4g0069841 48.643 442 210 5 110 549 86 512 1.77e-151 444
Msa1366430 MtrunA17_Chr7g0269511 47.092 533 243 10 44 549 40 560 2.97e-151 445
Msa1366430 MtrunA17_Chr2g0302021 48.643 442 213 5 110 549 92 521 3.78e-151 444
Msa1366430 MtrunA17_Chr7g0269531 47.015 536 251 11 43 554 40 566 8.08e-150 442
Msa1366430 MtrunA17_Chr8g0354911 45.234 535 260 10 45 549 77 608 2.58e-149 442
Msa1366430 MtrunA17_Chr1g0195351 50.208 480 206 10 96 549 77 549 2.87e-149 440
Msa1366430 MtrunA17_Chr3g0080381 45.055 546 249 9 44 549 90 624 3.81e-148 440
Msa1366430 MtrunA17_Chr7g0272141 40.000 555 309 6 12 554 1 543 2.73e-147 434
Msa1366430 MtrunA17_Chr7g0233801 44.038 520 266 9 42 553 51 553 2.76e-146 432
Msa1366430 MtrunA17_Chr7g0269521 45.756 542 247 11 43 553 37 562 1.04e-145 431
Msa1366430 MtrunA17_Chr4g0069881 43.715 533 265 13 28 549 23 531 5.02e-143 423
Msa1366430 MtrunA17_Chr3g0079341 48.182 440 207 7 113 549 102 523 3.52e-141 418
Msa1366430 MtrunA17_Chr3g0090091 48.073 441 208 8 113 549 101 524 1.36e-140 417
Msa1366430 MtrunA17_Chr3g0079351 47.955 440 208 7 113 549 102 523 1.36e-140 417
Msa1366430 MtrunA17_Chr3g0079361 47.955 440 208 7 113 549 102 523 3.68e-140 416
Msa1366430 MtrunA17_Chr4g0069861 45.089 448 221 5 110 549 83 513 7.32e-140 414
Msa1366430 MtrunA17_Chr4g0018371 49.099 444 205 7 112 549 107 535 1.59e-138 412
Msa1366430 MtrunA17_Chr4g0011751 43.470 513 244 9 50 550 8 486 3.45e-138 409
Msa1366430 MtrunA17_Chr8g0354901 41.905 525 275 9 37 549 71 577 1.01e-136 409
Msa1366430 MtrunA17_Chr3g0080391 41.569 510 284 6 43 549 72 570 2.20e-135 405
Msa1366430 MtrunA17_Chr8g0345211 41.233 519 287 7 37 549 72 578 1.00e-127 385
Msa1366430 MtrunA17_Chr1g0195311 65.517 261 89 1 289 549 51 310 4.07e-125 369
Msa1366430 MtrunA17_Chr4g0069891 39.205 528 302 8 36 553 75 593 3.51e-123 374
Msa1366430 MtrunA17_Chr1g0192311 38.095 525 312 7 36 553 52 570 1.80e-118 362
Msa1366430 MtrunA17_Chr1g0192281 38.095 525 312 7 36 553 52 570 1.80e-118 362
Msa1366430 MtrunA17_Chr1g0192301 38.506 522 307 8 36 550 58 572 1.29e-117 360
Msa1366430 MtrunA17_Chr1g0194091 39.565 460 260 5 108 549 106 565 9.11e-117 357
Msa1366430 MtrunA17_Chr1g0192321 41.935 465 244 8 108 549 118 579 1.68e-116 357
Msa1366430 MtrunA17_Chr4g0000121 37.905 525 312 8 36 553 40 557 1.86e-116 356
Msa1366430 MtrunA17_Chr7g0272151 36.632 576 321 14 9 549 13 579 6.35e-111 343
Msa1366430 MtrunA17_Chr1g0194081 39.783 460 253 6 108 551 110 561 4.97e-110 340
Msa1366430 MtrunA17_Chr7g0270691 34.965 572 320 15 4 550 2 546 5.04e-109 337
Msa1366430 MtrunA17_Chr2g0302001 56.800 250 107 1 300 549 185 433 2.63e-103 318
Msa1366430 MtrunA17_Chr2g0295531 33.698 549 338 8 9 551 16 544 1.65e-102 322
Msa1366430 MtrunA17_Chr2g0295551 36.047 516 307 7 46 551 60 562 8.01e-102 318
Msa1366430 MtrunA17_Chr3g0129921 33.039 566 328 10 9 546 15 557 1.24e-101 318
Msa1366430 MtrunA17_Chr7g0270651 35.888 535 306 7 46 551 46 572 9.26e-101 316
Msa1366430 MtrunA17_Chr7g0270661 38.116 467 262 5 110 551 108 572 2.50e-100 315
Msa1366430 MtrunA17_Chr7g0270671 38.116 467 262 5 110 551 108 572 2.50e-100 315
Msa1366430 MtrunA17_Chr4g0067601 35.182 523 317 9 39 549 56 568 2.80e-100 315
Msa1366430 MtrunA17_Chr4g0067611 34.816 517 317 9 46 551 63 570 5.28e-100 314
Msa1366430 MtrunA17_Chr8g0384121 36.723 531 277 17 43 545 57 556 1.07e-99 313
Msa1366430 MtrunA17_Chr7g0234711 59.912 227 90 1 324 549 39 265 1.14e-97 297
Msa1366430 MtrunA17_Chr7g0270631 37.607 468 267 4 110 553 96 562 3.17e-93 308
Msa1366430 MtrunA17_Chr7g0270631 34.161 483 271 7 110 551 644 1120 2.21e-81 276
Msa1366430 MtrunA17_Chr2g0295541 34.124 548 305 9 46 551 60 593 2.71e-91 292
Msa1366430 MtrunA17_Chr2g0301931 50.000 284 137 3 270 553 14 292 4.49e-91 281
Msa1366430 MtrunA17_Chr8g0380581 40.057 352 200 7 203 549 27 372 2.48e-86 272
Msa1366430 MtrunA17_Chr5g0437831 40.774 336 194 4 217 549 46 379 9.43e-85 268
Msa1366430 MtrunA17_Chr2g0334111 41.049 324 177 4 231 553 13 323 1.36e-80 255
Msa1366430 MtrunA17_Chr7g0268241 41.875 320 174 4 231 549 38 346 9.47e-78 249
Msa1366430 MtrunA17_Chr7g0271381 28.881 554 343 14 12 549 34 552 3.42e-63 216
Msa1366430 MtrunA17_Chr6g0487101 36.905 336 183 8 222 543 61 381 9.12e-59 200
Msa1366430 MtrunA17_Chr6g0453551 36.275 306 171 5 241 536 4 295 4.94e-56 191
Msa1366430 MtrunA17_Chr8g0389771 36.808 307 166 7 251 544 88 379 1.56e-55 191
Msa1366430 MtrunA17_Chr7g0258341 35.191 341 191 7 214 544 69 389 2.74e-55 191
Msa1366430 MtrunA17_Chr8g0391261 56.296 135 59 0 415 549 28 162 4.06e-51 172
Msa1366430 MtrunA17_Chr7g0217941 35.762 302 170 4 245 536 8 295 2.57e-50 176
Msa1366430 MtrunA17_Chr1g0194311 34.862 327 186 7 228 544 61 370 5.33e-50 176
Msa1366430 MtrunA17_Chr4g0070051 32.248 307 180 8 245 542 56 343 2.90e-45 163
Msa1366430 MtrunA17_Chr6g0466961 33.813 278 161 4 243 515 40 299 1.12e-44 160
Msa1366430 MtrunA17_Chr6g0466951 33.094 278 163 5 243 515 69 328 1.38e-44 161
Msa1366430 MtrunA17_Chr2g0299431 39.592 245 121 7 217 448 28 258 1.80e-43 156
Msa1366430 MtrunA17_Chr5g0446301 34.641 306 173 7 249 542 67 357 2.83e-41 152
Msa1366430 MtrunA17_Chr7g0265201 32.573 307 180 6 243 542 99 385 2.94e-41 153
Msa1366430 MtrunA17_Chr2g0294321 30.693 303 185 7 248 542 61 346 1.76e-40 150
Msa1366430 MtrunA17_Chr5g0399221 28.358 335 202 7 223 545 54 362 2.17e-39 147
Msa1366430 MtrunA17_Chr1g0161731 30.986 284 176 4 239 515 45 315 7.36e-38 142
Msa1366430 MtrunA17_Chr8g0351871 30.000 310 189 6 243 543 33 323 5.06e-37 140
Msa1366430 MtrunA17_Chr5g0440871 29.712 313 200 5 232 544 28 320 5.85e-37 139
Msa1366430 MtrunA17_Chr2g0295851 29.470 302 181 8 248 542 60 336 1.64e-35 136
Msa1366430 MtrunA17_Chr4g0037751 29.373 303 195 7 245 542 73 361 2.55e-34 133
Msa1366430 MtrunA17_Chr5g0420831 30.164 305 190 7 245 542 73 361 2.93e-34 133
Msa1366430 MtrunA17_Chr8g0391281 33.444 302 155 10 45 324 33 310 9.02e-33 127
Msa1366430 MtrunA17_Chr7g0234731 35.849 212 116 6 113 322 121 314 1.46e-31 124
Msa1366430 MtrunA17_Chr5g0437821 41.667 132 76 1 356 486 4 135 1.28e-30 116
Msa1366430 MtrunA17_Chr6g0459781 35.052 194 112 4 230 413 2 191 9.96e-26 105
Msa1366430 MtrunA17_Chr4g0025841 30.204 245 154 4 243 487 37 264 1.00e-25 106
Msa1366430 MtrunA17_Chr2g0314691 30.151 199 120 4 347 542 19 201 5.10e-23 97.4
Msa1366430 MtrunA17_Chr7g0265161 27.386 241 138 5 308 543 5 213 2.58e-22 96.3
Msa1366430 MtrunA17_Chr5g0440901 31.373 153 95 2 335 487 1 143 1.60e-20 88.2
Msa1366430 MtrunA17_Chr5g0440891 34.731 167 100 3 237 402 42 200 8.05e-20 88.2
Msa1366430 MtrunA17_Chr4g0073911 32.386 176 107 5 259 426 24 195 3.10e-19 87.4
Msa1366430 MtrunA17_Chr6g0459791 41.732 127 59 5 418 542 3 116 8.27e-19 82.4
Msa1366430 MtrunA17_Chr7g0269361 30.636 173 118 1 26 198 18 188 1.99e-17 80.9
Msa1366430 MtrunA17_Chr6g0460141 33.571 140 85 5 271 402 5 144 2.15e-14 70.9
Msa1366430 MtrunA17_Chr4g0018281 27.950 161 104 3 43 197 38 192 2.76e-13 68.9
Msa1366430 MtrunA17_Chr4g0018251 26.708 161 106 3 43 197 38 192 8.64e-12 64.7
Msa1366430 MtrunA17_Chr4g0067891 23.936 188 132 3 18 194 11 198 1.62e-11 63.9
Msa1366430 MtrunA17_Chr4g0018241 26.708 161 106 3 43 197 38 192 2.83e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366430 AT4G02320.1 55.578 502 193 5 66 553 33 518 0.0 564
Msa1366430 AT4G02300.1 54.970 493 202 3 67 551 50 530 0.0 546
Msa1366430 AT1G53830.1 50.735 544 242 9 30 553 50 587 9.10e-178 514
Msa1366430 AT3G14310.1 47.349 547 258 8 33 553 50 592 7.77e-167 486
Msa1366430 AT5G53370.1 44.912 570 267 10 14 554 35 586 4.15e-162 474
Msa1366430 AT5G53370.2 44.912 570 267 10 14 554 71 622 2.30e-161 474
Msa1366430 AT3G49220.1 46.565 524 250 8 45 554 90 597 9.36e-160 469
Msa1366430 AT3G49220.3 46.565 524 250 8 45 554 135 642 3.40e-159 469
Msa1366430 AT2G45220.1 54.102 451 179 10 99 549 85 507 3.62e-159 464
Msa1366430 AT3G43270.1 51.116 448 213 4 110 553 80 525 6.15e-158 461
Msa1366430 AT1G11580.1 45.703 512 253 6 46 549 59 553 1.32e-156 459
Msa1366430 AT1G11580.2 45.489 521 258 7 37 549 72 574 4.50e-156 459
Msa1366430 AT1G02810.1 45.423 579 263 13 16 549 3 573 8.10e-154 453
Msa1366430 AT4G33220.1 45.898 512 254 7 54 549 15 519 8.56e-154 451
Msa1366430 AT4G02330.1 44.737 570 273 9 22 553 6 571 3.00e-152 449
Msa1366430 AT3G10720.2 43.119 545 263 10 45 553 82 615 1.29e-145 433
Msa1366430 AT5G04970.1 43.911 542 263 12 45 553 87 620 2.83e-144 430
Msa1366430 AT4G33220.2 50.995 402 179 4 162 549 1 398 5.25e-144 421
Msa1366430 AT2G26440.1 43.436 518 278 8 39 549 34 543 2.38e-143 425
Msa1366430 AT3G05620.1 42.246 561 274 10 18 554 8 542 9.74e-143 423
Msa1366430 AT1G23200.1 43.646 543 239 12 44 548 36 549 4.27e-140 417
Msa1366430 AT2G47550.1 50.435 460 204 10 110 549 99 554 1.41e-139 416
Msa1366430 AT3G60730.1 45.197 458 223 6 110 549 68 515 2.05e-138 411
Msa1366430 AT5G51490.1 44.015 518 253 9 46 549 38 532 2.46e-138 412
Msa1366430 AT5G51500.1 46.526 475 227 9 84 553 88 540 3.55e-132 396
Msa1366430 AT3G59010.1 47.186 462 213 9 95 549 87 524 1.69e-131 394
Msa1366430 AT5G49180.1 40.535 523 297 7 37 550 50 567 2.16e-131 395
Msa1366430 AT3G05610.1 39.736 531 289 10 32 549 49 561 1.78e-130 396
Msa1366430 AT5G27870.1 40.232 517 291 6 43 553 58 562 3.81e-130 397
Msa1366430 AT4G33230.1 41.651 533 271 11 41 553 94 606 5.48e-129 390
Msa1366430 AT3G47400.1 46.980 447 220 7 110 549 154 590 7.39e-129 389
Msa1366430 AT2G43050.1 46.050 443 207 7 111 549 98 512 1.61e-128 386
Msa1366430 AT3G10710.1 41.373 510 273 7 43 549 71 557 3.53e-128 386
Msa1366430 AT2G26450.1 41.031 524 278 10 41 553 108 611 3.59e-128 388
Msa1366430 AT5G04960.1 40.734 518 278 7 43 553 69 564 5.08e-125 379
Msa1366430 AT1G53840.1 39.360 531 285 11 37 547 68 581 8.87e-125 379
Msa1366430 AT3G10720.1 62.692 260 96 1 294 553 1 259 3.98e-124 365
Msa1366430 AT3G14300.1 41.109 523 273 13 37 542 454 958 2.04e-119 375
Msa1366430 AT4G00190.1 39.726 511 261 11 46 553 8 474 5.70e-118 357
Msa1366430 AT3G06830.1 38.123 522 299 10 43 549 52 564 2.62e-117 358
Msa1366430 AT4G03930.1 40.667 450 246 7 107 549 85 520 4.60e-108 333
Msa1366430 AT5G20860.2 37.951 527 287 12 39 549 32 534 7.86e-108 333
Msa1366430 AT4G15980.1 48.949 333 166 3 220 549 367 698 6.90e-104 328
Msa1366430 AT4G15980.2 48.949 333 166 3 220 549 377 708 2.60e-103 327
Msa1366430 AT1G11590.1 42.195 410 221 5 143 549 124 520 2.62e-103 321
Msa1366430 AT3G27980.1 42.040 402 219 5 148 549 106 493 5.20e-103 320
Msa1366430 AT5G09760.1 36.882 526 300 13 35 543 38 548 8.77e-99 310
Msa1366430 AT5G09760.2 36.882 526 300 13 35 543 64 574 1.67e-98 310
Msa1366430 AT5G64640.1 35.019 534 286 14 45 545 96 601 3.01e-93 297
Msa1366430 AT5G20860.1 34.942 518 269 11 39 540 32 497 2.75e-89 284
Msa1366430 AT1G11370.1 51.527 262 121 1 222 483 31 286 6.48e-89 276
Msa1366430 AT2G47030.1 32.383 596 352 11 1 553 1 588 1.74e-84 274
Msa1366430 AT3G62170.1 34.173 556 313 12 39 553 45 588 2.21e-84 274
Msa1366430 AT2G47040.1 33.443 607 338 15 1 553 1 595 2.91e-83 271
Msa1366430 AT1G05310.1 35.015 337 189 6 216 542 72 388 4.49e-55 191
Msa1366430 AT2G36710.1 35.000 320 187 6 237 547 83 390 2.73e-54 189
Msa1366430 AT5G19730.1 34.985 343 191 9 217 542 54 381 1.01e-53 187
Msa1366430 AT3G29090.1 35.350 314 170 10 245 542 9 305 7.95e-51 177
Msa1366430 AT2G36700.1 33.770 305 184 4 243 542 42 333 1.88e-49 174
Msa1366430 AT3G17060.1 31.098 328 192 7 234 542 24 336 6.29e-49 173
Msa1366430 AT5G18990.1 35.593 295 166 5 232 515 18 299 8.89e-49 172
Msa1366430 AT2G21610.1 34.323 303 175 9 243 542 51 332 2.51e-47 169
Msa1366430 AT2G21610.2 34.323 303 175 9 243 542 56 337 3.44e-47 169
Msa1366430 AT3G24130.1 35.211 284 160 5 243 515 34 304 8.42e-46 164
Msa1366430 AT5G55590.1 35.256 312 175 8 243 542 82 378 1.59e-45 165
Msa1366430 AT5G07430.1 30.769 351 214 10 204 542 22 355 4.73e-42 155
Msa1366430 AT3G49220.2 33.333 294 166 8 45 324 135 412 2.93e-40 151
Msa1366430 AT5G55590.2 35.547 256 141 6 243 486 82 325 3.21e-40 149
Msa1366430 AT1G44980.1 38.333 240 137 3 170 406 10 241 1.38e-39 145
Msa1366430 AT5G07420.1 30.671 313 196 7 235 542 59 355 8.38e-39 146
Msa1366430 AT1G69940.1 30.537 298 185 8 251 542 74 355 4.89e-38 144
Msa1366430 AT5G07410.1 30.537 298 185 8 251 542 74 355 1.94e-37 142
Msa1366430 AT5G47500.1 27.327 333 204 7 223 543 52 358 2.15e-36 139
Msa1366430 AT5G61680.1 31.023 303 189 6 245 542 71 358 3.64e-36 139
Msa1366430 AT2G19150.1 31.447 318 188 7 243 549 41 339 8.76e-36 137
Msa1366430 AT2G47280.1 31.173 324 188 11 234 543 26 328 1.70e-32 127
Msa1366430 AT5G26810.1 26.347 334 220 8 229 550 20 339 6.24e-31 123
Msa1366430 AT2G19150.2 32.016 253 149 5 243 486 41 279 1.82e-29 118
Msa1366430 AT4G25250.1 30.000 190 122 7 14 194 6 193 2.34e-15 75.5
Msa1366430 AT5G51520.1 27.604 192 124 6 17 194 9 199 2.88e-12 66.6
Msa1366430 AT5G62360.1 29.268 164 105 3 43 201 45 202 2.91e-12 66.6

Find 157 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGTAGCTTCCTATCTTTC+GGG 0.181837 tig0018459:+29030 None:intergenic
ATATGATAAATTGTATTTAT+AGG 0.196924 tig0018459:-24705 Msa1366430:three_prime_UTR
AATCTTCAGTCTTATTTATA+TGG 0.200774 tig0018459:-24781 Msa1366430:three_prime_UTR
TCTTTCACTTTACCATATTC+AGG 0.200801 tig0018459:+29074 None:intergenic
TACCGCGAATGTGATGTTTA+TGG 0.201693 tig0018459:-25641 Msa1366430:CDS
TACCTAGTTGCGCTAGAATT+TGG 0.221120 tig0018459:+28915 None:intergenic
CACAATCCTCAAGGGCTCTT+TGG 0.254373 tig0018459:+29384 None:intergenic
TGTAGTAGCTTCCTATCTTT+CGG 0.258132 tig0018459:+29029 None:intergenic
ACAATTCAAGATTGAAATTC+CGG 0.284922 tig0018459:+25490 None:intergenic
ATCAACTACCATATTTATAT+TGG 0.303942 tig0018459:-29810 Msa1366430:five_prime_UTR
ACTTTCCAATCATCTACTTT+TGG 0.313523 tig0018459:-28385 Msa1366430:intron
TCTGAAACTTTCCCTGAATA+TGG 0.313917 tig0018459:-29086 Msa1366430:CDS
ATCTCCAACTAACATCAAAT+TGG 0.314325 tig0018459:+28462 None:intergenic
AGATTGAAATTCCGGTGTTT+TGG 0.332878 tig0018459:+25498 None:intergenic
GGAACTGTAGACTTCATCTT+TGG 0.342099 tig0018459:-25620 Msa1366430:CDS
ATTTATTTGAACTCTCTATA+TGG 0.346744 tig0018459:+29929 None:intergenic
AAAACCAATTTGATGTTAGT+TGG 0.349295 tig0018459:-28466 Msa1366430:CDS
GCTTTGGATACATTGTTCTA+TGG 0.359797 tig0018459:-25311 Msa1366430:CDS
GTGCATATAGGTTGCAGTTC+TGG 0.361587 tig0018459:+25579 None:intergenic
GTTCTCAAAGGTTATACCTT+TGG 0.362612 tig0018459:+25787 None:intergenic
AGGGAAAACAGCACCATTGC+TGG 0.366197 tig0018459:-29699 Msa1366430:CDS
ACTAAAATTGTGGAGAGAAT+TGG 0.366205 tig0018459:+29668 None:intergenic
GCCAGCAGAAATGTTGTAGA+TGG 0.376204 tig0018459:-28415 Msa1366430:CDS
AATGAATGGTTGAGCTCTAC+TGG 0.377444 tig0018459:-25167 Msa1366430:CDS
GTGTTCCTTCGCATGCTGAT+TGG 0.381606 tig0018459:+29579 None:intergenic
ATTTATATGGAGGATTTGAT+AGG 0.389886 tig0018459:-24768 Msa1366430:three_prime_UTR
CTCTATGAATTTAGTACATA+AGG 0.392062 tig0018459:+25061 None:intergenic
ACTTACCAAAAGTAGATGAT+TGG 0.393790 tig0018459:+28380 None:intergenic
TACATAAAATAAATGAGAAT+GGG 0.395568 tig0018459:+24861 None:intergenic
TGTTCCTTCGCATGCTGATT+GGG 0.403041 tig0018459:+29580 None:intergenic
ATGGAATGGAACGTTTGCTT+TGG 0.405279 tig0018459:-25327 Msa1366430:CDS
CAGATTTGTGATACACATAA+AGG 0.408417 tig0018459:-28527 Msa1366430:CDS
CTTCTACCAATGTAGCTTTG+TGG 0.408896 tig0018459:-25705 Msa1366430:CDS
ACTAAATTCATAGAGTTTAA+CGG 0.409472 tig0018459:-25053 Msa1366430:three_prime_UTR
GGTGATTGCCAATATAAATA+TGG 0.409717 tig0018459:+29802 None:intergenic
GATCGGGTTTGCGTGCATAT+AGG 0.411663 tig0018459:+25567 None:intergenic
ACTTGTAAATTTCGCACATA+AGG 0.413327 tig0018459:+25096 None:intergenic
CGCTTGATGTTTGCTAGGTC+CGG 0.416833 tig0018459:+25760 None:intergenic
AGTTTGAGAGAGATCAGAAA+TGG 0.418630 tig0018459:+29322 None:intergenic
CATGGGTGTCCCCGAAAGAT+AGG 0.420538 tig0018459:-29040 Msa1366430:CDS
GCCATGTTGAAGAAAGTTCC+TGG 0.423964 tig0018459:-29131 Msa1366430:CDS
GAGAATAATTGTAGTTGTGC+TGG 0.440554 tig0018459:+29736 None:intergenic
GACCAATGTGTACACATGTT+TGG 0.445484 tig0018459:-29240 Msa1366430:CDS
AGAGTTACCTCGGTCGTCCT+TGG 0.448194 tig0018459:-25421 Msa1366430:CDS
AAGTCGAAGTCCGGTGCAAT+TGG 0.449411 tig0018459:+29436 None:intergenic
CTTTCACTTTACCATATTCA+GGG 0.450923 tig0018459:+29075 None:intergenic
TATGGAGGATTTGATAGGCT+TGG 0.451928 tig0018459:-24763 Msa1366430:three_prime_UTR
GACTGTCAAACTCTACTTAG+TGG 0.454122 tig0018459:-29269 Msa1366430:CDS
GCAATATTATGAACTCTCAT+TGG 0.455689 tig0018459:+24988 None:intergenic
ATGCTGATTGGGCTACTGTT+TGG 0.456849 tig0018459:+29591 None:intergenic
CACAAAGCTACATTGGTAGA+AGG 0.457431 tig0018459:+25706 None:intergenic
ATAGGCTTGGCAACGATTGT+CGG 0.459543 tig0018459:-24750 Msa1366430:three_prime_UTR
AGCAACCACAAGATCAAACT+TGG 0.461853 tig0018459:+28989 None:intergenic
AAGGTTGAGACACAAAGGTC+TGG 0.465297 tig0018459:+29551 None:intergenic
ATGTAGCTTTGTGGCTTACC+AGG 0.466786 tig0018459:-25696 Msa1366430:CDS
CTCTTGAACGTTGATTGTAC+TGG 0.467559 tig0018459:+25440 None:intergenic
ACACCTTTCAACTCAAATCA+AGG 0.468433 tig0018459:+25132 None:intergenic
CAAGCGGTAGCGGTGAGAAA+TGG 0.469647 tig0018459:-25743 Msa1366430:CDS
AAGATCTGGGAAAGTGGATA+AGG 0.473621 tig0018459:+29532 None:intergenic
TGAAAGATGGGTTTCCATCA+TGG 0.476648 tig0018459:-29058 Msa1366430:CDS
AAGAATTTGTTCACTGCACA+AGG 0.478688 tig0018459:-25536 Msa1366430:CDS
ATACATAAAATAAATGAGAA+TGG 0.479532 tig0018459:+24860 None:intergenic
AATTTGATGTTAGTTGGAGA+TGG 0.480444 tig0018459:-28460 Msa1366430:CDS
AGGACAGAGCAAATCATTTG+TGG 0.480835 tig0018459:+29494 None:intergenic
GGACAGAGCAAATCATTTGT+GGG 0.481086 tig0018459:+29495 None:intergenic
TGCACCGGACTTCGACTTCG+CGG 0.482626 tig0018459:-29431 Msa1366430:CDS
ATCCAGCAGGATGGTTAGAA+TGG 0.483621 tig0018459:-25346 Msa1366430:CDS
GATCTTGTGGTTGCTAAAGA+TGG 0.486358 tig0018459:-28981 Msa1366430:CDS
AATTATAGTGTGTTTGAGAG+TGG 0.486644 tig0018459:+29779 None:intergenic
TGAGGTAAGATCTGGGAAAG+TGG 0.486681 tig0018459:+29526 None:intergenic
GAATATGGTAAAGTGAAAGA+TGG 0.489119 tig0018459:-29071 Msa1366430:CDS
ACAGGCAACTTTACCACTAT+AGG 0.490528 tig0018459:-28957 Msa1366430:CDS
TTTCCTTGATTTGAGTTGAA+AGG 0.493049 tig0018459:-25135 Msa1366430:exon
ATAACCTGGCCACGTAACTC+TGG 0.494148 tig0018459:+25250 None:intergenic
GATAATTTGATTGATCCAGC+AGG 0.499966 tig0018459:-25359 Msa1366430:CDS
AGCAATTGCTTCTCCTATAG+TGG 0.501131 tig0018459:+28944 None:intergenic
ATTCTCTCCTTTACCATGAG+AGG 0.501133 tig0018459:-29719 Msa1366430:exon
TTCCATTCTAACCATCCTGC+TGG 0.501249 tig0018459:+25344 None:intergenic
CTTACTGCTAGAAGCTATTG+TGG 0.502569 tig0018459:+29295 None:intergenic
CACATTCGCGGTAGAATTGA+CGG 0.504026 tig0018459:+25651 None:intergenic
TTCTCTCCTTTACCATGAGA+GGG 0.505750 tig0018459:-29718 Msa1366430:exon
ATTTGATGTTAGTTGGAGAT+GGG 0.508898 tig0018459:-28459 Msa1366430:CDS
ATGTTAGTTGGAGATGGGAT+TGG 0.509060 tig0018459:-28454 Msa1366430:CDS
ATTTGAGTTGAAAGGTGTAA+TGG 0.509601 tig0018459:-25127 Msa1366430:exon
AAAATGTTGGATATACTCAT+TGG 0.511540 tig0018459:-24923 Msa1366430:three_prime_UTR
AATTTATACAAGGAAATGAA+TGG 0.514507 tig0018459:-25181 Msa1366430:CDS
TCAAACCAAGTTTGATCTTG+TGG 0.515791 tig0018459:-28994 Msa1366430:CDS
ATAAATTAACACAATCCTCA+AGG 0.516148 tig0018459:+29375 None:intergenic
CCTAAACAACACCATAAAAG+AGG 0.516848 tig0018459:-29474 Msa1366430:CDS
CCCATCTACAACATTTCTGC+TGG 0.519474 tig0018459:+28414 None:intergenic
TTATGTATTGTTGAAATGGA+TGG 0.520768 tig0018459:-24845 Msa1366430:three_prime_UTR
TATGTATTGTTGAAATGGAT+GGG 0.529259 tig0018459:-24844 Msa1366430:three_prime_UTR
CTTCAGTCTTATTTATATGG+AGG 0.529416 tig0018459:-24778 Msa1366430:three_prime_UTR
AATGTGTACACATGTTTGGA+TGG 0.529704 tig0018459:-29236 Msa1366430:CDS
GAGTATAAGAATAGAGGTCC+TGG 0.529819 tig0018459:-25287 Msa1366430:CDS
TTTGTGATACACATAAAGGC+TGG 0.530863 tig0018459:-28523 Msa1366430:CDS
ATTTGAACTCTCTATATGGA+AGG 0.533410 tig0018459:+29933 None:intergenic
ATTATAGTGTGTTTGAGAGT+GGG 0.538134 tig0018459:+29780 None:intergenic
TTCCATAAACATCACATTCG+CGG 0.538310 tig0018459:+25639 None:intergenic
TCGACCGCGAAGTCGAAGTC+CGG 0.539588 tig0018459:+29427 None:intergenic
GAAAGATGGGTTTCCATCAT+GGG 0.541400 tig0018459:-29057 Msa1366430:CDS
CTCCAAATTCTAGCGCAACT+AGG 0.542551 tig0018459:-28917 Msa1366430:intron
TTGTGATACACATAAAGGCT+GGG 0.546086 tig0018459:-28522 Msa1366430:CDS
GCTACCGCTTGATGTTTGCT+AGG 0.546145 tig0018459:+25755 None:intergenic
AGGTTGAGACACAAAGGTCT+GGG 0.550274 tig0018459:+29552 None:intergenic
AATATGGTAAAGTGAAAGAT+GGG 0.551007 tig0018459:-29070 Msa1366430:CDS
AACAGTGAACTGACTTGCCT+CGG 0.552572 tig0018459:+25208 None:intergenic
TTGTAAAATTGCAGCTGCCG+CGG 0.554976 tig0018459:-25471 Msa1366430:CDS
GAAGCTTTAGTCTTCACTCC+AGG 0.555587 tig0018459:+29113 None:intergenic
TTGGTAGAAGGCTGAGAAGT+CGG 0.555627 tig0018459:+25718 None:intergenic
CTGGCACTTGTATTCGAACC+AGG 0.557623 tig0018459:+25269 None:intergenic
GGTAGAATTGACGGAGGGAG+TGG 0.563274 tig0018459:+25660 None:intergenic
ACTGTTAGACAATTTATACA+AGG 0.563307 tig0018459:-25191 Msa1366430:CDS
AGTGCCAGAGTTACGTGGCC+AGG 0.568322 tig0018459:-25254 Msa1366430:CDS
GCAGGATGGTTAGAATGGAA+TGG 0.569015 tig0018459:-25341 Msa1366430:CDS
TAGCAAACATCAAGCGGTAG+CGG 0.569213 tig0018459:-25753 Msa1366430:CDS
AAAAGTAGATGATTGGAAAG+TGG 0.570646 tig0018459:+28387 None:intergenic
CATCTTTGGCAATGCAGCGG+TGG 0.575842 tig0018459:-25606 Msa1366430:CDS
GGTAAGCCACAAAGCTACAT+TGG 0.578392 tig0018459:+25699 None:intergenic
TCCAGGAACTTTCTTCAACA+TGG 0.582962 tig0018459:+29130 None:intergenic
TCTTTCGGGGACACCCATGA+TGG 0.585799 tig0018459:+29044 None:intergenic
TGTGATACACATAAAGGCTG+GGG 0.589170 tig0018459:-28521 Msa1366430:CDS
ATAACCTTTGAGAACTCAGC+CGG 0.591636 tig0018459:-25779 Msa1366430:CDS
TGGATATACTCATTGGAAGT+CGG 0.593100 tig0018459:-24916 Msa1366430:three_prime_UTR
CAATCATCTTCCAATTGCAC+CGG 0.594371 tig0018459:-29446 Msa1366430:CDS
TATGGTGAGTATAAGAATAG+AGG 0.595570 tig0018459:-25293 Msa1366430:CDS
GTGGTTGCTAAAGATGGCAC+AGG 0.596430 tig0018459:-28975 Msa1366430:CDS
AAATATTAGAACTAAAATTG+TGG 0.600237 tig0018459:+29658 None:intergenic
TAGTAGCTTCCTATCTTTCG+GGG 0.601425 tig0018459:+29031 None:intergenic
CCAGCAGAAATGTTGTAGAT+GGG 0.603077 tig0018459:-28414 Msa1366430:CDS
TAAATTAACACAATCCTCAA+GGG 0.603853 tig0018459:+29376 None:intergenic
GGAGACAAATTCATAGCCAA+AGG 0.605203 tig0018459:-25803 Msa1366430:CDS
ACATAAAATAAATGAGAATG+GGG 0.610674 tig0018459:+24862 None:intergenic
GCAGAAATGTTGTAGATGGG+TGG 0.611210 tig0018459:-28411 Msa1366430:CDS
TTATAGTGTGTTTGAGAGTG+GGG 0.611386 tig0018459:+29781 None:intergenic
ACTTGACCAAAGAGCCCTTG+AGG 0.618624 tig0018459:-29390 Msa1366430:CDS
ACTAGAAATATCATTCAACT+TGG 0.619819 tig0018459:+29172 None:intergenic
TTTGTAATGACTTTATAACC+TGG 0.621460 tig0018459:+25236 None:intergenic
AGTGGACATAGAGAGTGTCC+TGG 0.625727 tig0018459:+25678 None:intergenic
TGGATAAGGTTGAGACACAA+AGG 0.626369 tig0018459:+29546 None:intergenic
ATTTGATTGATCCAGCAGGA+TGG 0.631665 tig0018459:-25355 Msa1366430:CDS
GGTTATAAAGCAGACTTACG+TGG 0.643140 tig0018459:+24966 None:intergenic
CTTCATCTTTGGCAATGCAG+CGG 0.646252 tig0018459:-25609 Msa1366430:CDS
CGGACCTAGCAAACATCAAG+CGG 0.654497 tig0018459:-25759 Msa1366430:CDS
ATTGGCATGAGAGCCAGCAA+TGG 0.659872 tig0018459:+29686 None:intergenic
ATCCAAACATGTGTACACAT+TGG 0.661634 tig0018459:+29238 None:intergenic
AGGTCCGGCTGAGTTCTCAA+AGG 0.661652 tig0018459:+25775 None:intergenic
GTAGCCCAATCAGCATGCGA+AGG 0.662933 tig0018459:-29584 Msa1366430:CDS
GAAGATCCTAACCAAAACAC+CGG 0.670235 tig0018459:-25509 Msa1366430:CDS
TCAACGTTCAAGAGTTACCT+CGG 0.677560 tig0018459:-25431 Msa1366430:CDS
TTCGCGGTAGAATTGACGGA+GGG 0.690665 tig0018459:+25655 None:intergenic
GATTGGACAGACTGTTGTGA+AGG 0.692383 tig0018459:-28437 Msa1366430:CDS
TGGGGCTTACTTTGAAAACG+TGG 0.696123 tig0018459:-28503 Msa1366430:CDS
ATACAAGTGCCAGAGTTACG+TGG 0.697478 tig0018459:-25259 Msa1366430:CDS
AGTCATTACAAACACTACCG+AGG 0.710837 tig0018459:-25225 Msa1366430:CDS
TTGTACTGGAATCAAATCCG+CGG 0.716710 tig0018459:+25454 None:intergenic
ATTCGCGGTAGAATTGACGG+AGG 0.742607 tig0018459:+25654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTATTTTAATTAAA+AGG + tig0018459:27734-27753 None:intergenic 0.0%
!!! CAATTATTTTATCTTTTTTA+AGG + tig0018459:26421-26440 None:intergenic 10.0%
!! AAAAAGATAAAATAATTGAA+TGG - tig0018459:26423-26442 Msa1366430:intron 10.0%
!! ATTTCAAATCAAAATTATTT+CGG - tig0018459:26537-26556 Msa1366430:intron 10.0%
!! AAATTAAATCATTAAAGTAT+GGG - tig0018459:28527-28546 Msa1366430:CDS 10.0%
!! ATATGATAAATTGTATTTAT+AGG - tig0018459:29951-29970 Msa1366430:five_prime_UTR 10.0%
!! AAATATTAGAACTAAAATTG+TGG + tig0018459:25001-25020 None:intergenic 15.0%
!! AAAAATGAGAAAAAAAATTG+AGG - tig0018459:25461-25480 Msa1366430:CDS 15.0%
!! GATCTATATTCATAATTTAT+AGG + tig0018459:25778-25797 None:intergenic 15.0%
!! TCTATATTCATAATTTATGT+CGG - tig0018459:25913-25932 Msa1366430:intron 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + tig0018459:27437-27456 None:intergenic 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + tig0018459:27438-27457 None:intergenic 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + tig0018459:27437-27456 None:intergenic 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + tig0018459:27438-27457 None:intergenic 15.0%
!! TAAAATTTAATAGAGACAAA+AGG - tig0018459:27745-27764 Msa1366430:intron 15.0%
!! AAAATTTAATAGAGACAAAA+GGG - tig0018459:27746-27765 Msa1366430:intron 15.0%
!!! TATTAAAGTGTCAATAAAAT+AGG + tig0018459:28103-28122 None:intergenic 15.0%
!!! AAAATTTTAAAATCTATTGG+TGG - tig0018459:28221-28240 Msa1366430:intron 15.0%
!!! GAAAAGTAAGTAATTTTATA+TGG - tig0018459:28359-28378 Msa1366430:intron 15.0%
!! CATACTTTAATGATTTAATT+TGG + tig0018459:28528-28547 None:intergenic 15.0%
!! CAAATTAAATCATTAAAGTA+TGG - tig0018459:28526-28545 Msa1366430:CDS 15.0%
!!! TTTTTTACACAATTGAATAT+TGG - tig0018459:28812-28831 Msa1366430:intron 15.0%
!!! AACCAGAATTTTAAAAATAA+CGG - tig0018459:29709-29728 Msa1366430:exon 15.0%
!! TACATAAAATAAATGAGAAT+GGG + tig0018459:29798-29817 None:intergenic 15.0%
!! ATACATAAAATAAATGAGAA+TGG + tig0018459:29799-29818 None:intergenic 15.0%
!!! TATTTTATGTATTGTTGAAA+TGG - tig0018459:29807-29826 Msa1366430:five_prime_UTR 15.0%
!! ATTTATTTGAACTCTCTATA+TGG + tig0018459:24730-24749 None:intergenic 20.0%
!! ATCAACTACCATATTTATAT+TGG - tig0018459:24846-24865 Msa1366430:three_prime_UTR 20.0%
!! CTATATTCATAATTTATGTC+GGG - tig0018459:25914-25933 Msa1366430:intron 20.0%
!! AATCAATAACACACTATTTA+AGG + tig0018459:26108-26127 None:intergenic 20.0%
!! TAAAATAATTGAATGGCATA+TGG - tig0018459:26430-26449 Msa1366430:intron 20.0%
!! AAATTGTGTTCAAGTAATAT+TGG + tig0018459:26521-26540 None:intergenic 20.0%
!! ATCATCTATGTTATTATTGT+TGG - tig0018459:26689-26708 Msa1366430:intron 20.0%
!! AATGTAACATGATTCTAATT+GGG - tig0018459:27051-27070 Msa1366430:intron 20.0%
!! TTAAGTTCCTATATTTAGTT+GGG - tig0018459:27084-27103 Msa1366430:intron 20.0%
!!! AGAATATGCAAATTTTGTAT+AGG - tig0018459:27200-27219 Msa1366430:intron 20.0%
!! AGTTGTACATATATATTTCA+AGG - tig0018459:27333-27352 Msa1366430:intron 20.0%
!! GTTGTACATATATATTTCAA+GGG - tig0018459:27334-27353 Msa1366430:intron 20.0%
!! TTGTACATATATATTTCAAG+GGG - tig0018459:27335-27354 Msa1366430:intron 20.0%
!! TAAAGTTTAATAGAGACAAA+AGG - tig0018459:27500-27519 Msa1366430:intron 20.0%
!! AAAGTTTAATAGAGACAAAA+GGG - tig0018459:27501-27520 Msa1366430:intron 20.0%
!! TACTAATTAGAACTAACATT+CGG - tig0018459:27929-27948 Msa1366430:intron 20.0%
!! GTAATGAATAGAAGAAAATT+AGG + tig0018459:28141-28160 None:intergenic 20.0%
!! TTGTAAAAACGACAAAAATA+TGG - tig0018459:28409-28428 Msa1366430:CDS 20.0%
!!! CCATTTTATACTTTACTAAA+CGG + tig0018459:28577-28596 None:intergenic 20.0%
!! AATTTATACAAGGAAATGAA+TGG - tig0018459:29475-29494 Msa1366430:CDS 20.0%
!! ACTAAATTCATAGAGTTTAA+CGG - tig0018459:29603-29622 Msa1366430:CDS 20.0%
!! ACATAAAATAAATGAGAATG+GGG + tig0018459:29797-29816 None:intergenic 20.0%
!!! AATCTTCAGTCTTATTTATA+TGG - tig0018459:29875-29894 Msa1366430:five_prime_UTR 20.0%
!!! TGTTGCTAATTTTGAGAAAT+TGG + tig0018459:25031-25050 None:intergenic 25.0%
!! TGATTGTTTAACCTCTTTTA+TGG + tig0018459:25196-25215 None:intergenic 25.0%
! TAAATTAACACAATCCTCAA+GGG + tig0018459:25283-25302 None:intergenic 25.0%
! ATAAATTAACACAATCCTCA+AGG + tig0018459:25284-25303 None:intergenic 25.0%
! ACTAGAAATATCATTCAACT+TGG + tig0018459:25487-25506 None:intergenic 25.0%
! AATATGGTAAAGTGAAAGAT+GGG - tig0018459:25586-25605 Msa1366430:CDS 25.0%
! CATAATTTATAGGTATGTAG+TGG + tig0018459:25768-25787 None:intergenic 25.0%
! GTTTATCTCTCTAATTCTAA+TGG - tig0018459:25857-25876 Msa1366430:intron 25.0%
! AAAACCAATTTGATGTTAGT+TGG - tig0018459:26190-26209 Msa1366430:intron 25.0%
! TACATTCTACAATTAATACG+AGG + tig0018459:26335-26354 None:intergenic 25.0%
! TTCAAACATATCGAAGAAAT+TGG - tig0018459:26903-26922 Msa1366430:intron 25.0%
! CAATGTAACATGATTCTAAT+TGG - tig0018459:27050-27069 Msa1366430:intron 25.0%
! GATTCTAATTGGGAAAATTA+TGG - tig0018459:27061-27080 Msa1366430:intron 25.0%
! GTTAAGTTCCTATATTTAGT+TGG - tig0018459:27083-27102 Msa1366430:intron 25.0%
! TAAGTTCCTATATTTAGTTG+GGG - tig0018459:27085-27104 Msa1366430:intron 25.0%
!! CAAATTTTGTATAGGAGAAA+GGG - tig0018459:27208-27227 Msa1366430:intron 25.0%
! TCTACAATAGATTGAAATCA+CGG - tig0018459:27252-27271 Msa1366430:intron 25.0%
! TGTACATATATATTTCAAGG+GGG - tig0018459:27336-27355 Msa1366430:intron 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG + tig0018459:27414-27433 None:intergenic 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - tig0018459:27524-27543 Msa1366430:intron 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG + tig0018459:27414-27433 None:intergenic 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - tig0018459:27524-27543 Msa1366430:intron 25.0%
!! ATGCTACTTGACAAAAAAAA+AGG + tig0018459:27961-27980 None:intergenic 25.0%
! ACAATGCATTATTATATGCA+GGG + tig0018459:28043-28062 None:intergenic 25.0%
! TCAATAAAATAGGAATTGAC+CGG + tig0018459:28093-28112 None:intergenic 25.0%
! AATAGAAGAAAATTAGGCAA+AGG + tig0018459:28135-28154 None:intergenic 25.0%
! CAAATTGAGATTTGGATTTA+TGG + tig0018459:28286-28305 None:intergenic 25.0%
!!! ACTTACTTTTCTTGCTTAAT+TGG + tig0018459:28350-28369 None:intergenic 25.0%
!! ACAATGTTCTTTTCTTTAGT+TGG + tig0018459:28393-28412 None:intergenic 25.0%
! TTGACTAAAATTATTGCTGT+TGG + tig0018459:28462-28481 None:intergenic 25.0%
! CCGTTTAGTAAAGTATAAAA+TGG - tig0018459:28574-28593 Msa1366430:intron 25.0%
! TTTACACAATTGAATATTGG+TGG - tig0018459:28815-28834 Msa1366430:intron 25.0%
! ACAATTCAAGATTGAAATTC+CGG + tig0018459:29169-29188 None:intergenic 25.0%
!!! GTTCTTGAATATTTTTTCCA+AGG + tig0018459:29255-29274 None:intergenic 25.0%
! TTTGTAATGACTTTATAACC+TGG + tig0018459:29423-29442 None:intergenic 25.0%
! ACTGTTAGACAATTTATACA+AGG - tig0018459:29465-29484 Msa1366430:CDS 25.0%
! CTCTATGAATTTAGTACATA+AGG + tig0018459:29598-29617 None:intergenic 25.0%
!!! TGCCGTTATTTTTAAAATTC+TGG + tig0018459:29714-29733 None:intergenic 25.0%
! TAAAAATAACGGCAAAATGT+TGG - tig0018459:29720-29739 Msa1366430:exon 25.0%
! AAAATGTTGGATATACTCAT+TGG - tig0018459:29733-29752 Msa1366430:five_prime_UTR 25.0%
!! GTAAAACTATTTTACACTGA+AGG - tig0018459:29764-29783 Msa1366430:five_prime_UTR 25.0%
! TTATGTATTGTTGAAATGGA+TGG - tig0018459:29811-29830 Msa1366430:five_prime_UTR 25.0%
! TATGTATTGTTGAAATGGAT+GGG - tig0018459:29812-29831 Msa1366430:five_prime_UTR 25.0%
! ATTTATATGGAGGATTTGAT+AGG - tig0018459:29888-29907 Msa1366430:five_prime_UTR 25.0%
ATTTGAACTCTCTATATGGA+AGG + tig0018459:24726-24745 None:intergenic 30.0%
GGTGATTGCCAATATAAATA+TGG + tig0018459:24857-24876 None:intergenic 30.0%
ATTATAGTGTGTTTGAGAGT+GGG + tig0018459:24879-24898 None:intergenic 30.0%
AATTATAGTGTGTTTGAGAG+TGG + tig0018459:24880-24899 None:intergenic 30.0%
ACTAAAATTGTGGAGAGAAT+TGG + tig0018459:24991-25010 None:intergenic 30.0%
CTTTCACTTTACCATATTCA+GGG + tig0018459:25584-25603 None:intergenic 30.0%
TCTTTCACTTTACCATATTC+AGG + tig0018459:25585-25604 None:intergenic 30.0%
GAATATGGTAAAGTGAAAGA+TGG - tig0018459:25585-25604 Msa1366430:CDS 30.0%
ATATAGACCATCTCACAATA+TGG + tig0018459:25900-25919 None:intergenic 30.0%
TTCATTTCCACAATTGAACA+TGG - tig0018459:26001-26020 Msa1366430:intron 30.0%
! ACTATTTAAGGTCACATAGT+AGG + tig0018459:26096-26115 None:intergenic 30.0%
CAGATTTGTGATACACATAA+AGG - tig0018459:26129-26148 Msa1366430:intron 30.0%
ATCTCCAACTAACATCAAAT+TGG + tig0018459:26197-26216 None:intergenic 30.0%
AATTTGATGTTAGTTGGAGA+TGG - tig0018459:26196-26215 Msa1366430:intron 30.0%
ATTTGATGTTAGTTGGAGAT+GGG - tig0018459:26197-26216 Msa1366430:intron 30.0%
AAAAGTAGATGATTGGAAAG+TGG + tig0018459:26272-26291 None:intergenic 30.0%
! ACTTTCCAATCATCTACTTT+TGG - tig0018459:26271-26290 Msa1366430:intron 30.0%
ACTTACCAAAAGTAGATGAT+TGG + tig0018459:26279-26298 None:intergenic 30.0%
CGAGGAAAATTAGTAGAAAA+AGG + tig0018459:26317-26336 None:intergenic 30.0%
ATACAGTTAAACAGAGTACA+AGG - tig0018459:26456-26475 Msa1366430:intron 30.0%
TACAGTTAAACAGAGTACAA+GGG - tig0018459:26457-26476 Msa1366430:intron 30.0%
ATGATTTGAGCTCAATTGTT+TGG + tig0018459:26872-26891 None:intergenic 30.0%
! CGAAGAAATTGGTCAAATTT+TGG - tig0018459:26914-26933 Msa1366430:intron 30.0%
TGATAATCTAGAGATTATCC+AGG + tig0018459:26946-26965 None:intergenic 30.0%
TCATTTCCCCAACTAAATAT+AGG + tig0018459:27094-27113 None:intergenic 30.0%
! GCAAATTTTGTATAGGAGAA+AGG - tig0018459:27207-27226 Msa1366430:intron 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + tig0018459:27429-27448 None:intergenic 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + tig0018459:27429-27448 None:intergenic 30.0%
AAATGCGTGTTGAAATATGT+GGG + tig0018459:27847-27866 None:intergenic 30.0%
TAAATGCGTGTTGAAATATG+TGG + tig0018459:27848-27867 None:intergenic 30.0%
ACATATTTCAACACGCATTT+AGG - tig0018459:27847-27866 Msa1366430:intron 30.0%
!!! TTTTTTGTCAAGTAGCATAG+TGG - tig0018459:27963-27982 Msa1366430:intron 30.0%
TCACTTATAAGGTGAATAAG+TGG - tig0018459:27993-28012 Msa1366430:intron 30.0%
CACTTATAAGGTGAATAAGT+GGG - tig0018459:27994-28013 Msa1366430:intron 30.0%
ACTTATAAGGTGAATAAGTG+GGG - tig0018459:27995-28014 Msa1366430:intron 30.0%
CAATGCATTATTATATGCAG+GGG + tig0018459:28042-28061 None:intergenic 30.0%
GACAATGCATTATTATATGC+AGG + tig0018459:28044-28063 None:intergenic 30.0%
TCAATCATAGCCAATTAAGA+TGG + tig0018459:28248-28267 None:intergenic 30.0%
TGGATTTATGGATCATCTTT+CGG + tig0018459:28274-28293 None:intergenic 30.0%
TACATAGGCAAATTGAGATT+TGG + tig0018459:28294-28313 None:intergenic 30.0%
! TGGATCTGATTGATAACAAA+GGG + tig0018459:28330-28349 None:intergenic 30.0%
! TTGGATCTGATTGATAACAA+AGG + tig0018459:28331-28350 None:intergenic 30.0%
! AAATCACCTCTTTCTCTTTT+TGG + tig0018459:28654-28673 None:intergenic 30.0%
!! AAATTCTTTTGCTTTGGATC+GGG + tig0018459:29108-29127 None:intergenic 30.0%
!! CAAATTCTTTTGCTTTGGAT+CGG + tig0018459:29109-29128 None:intergenic 30.0%
! GTGAACAAATTCTTTTGCTT+TGG + tig0018459:29114-29133 None:intergenic 30.0%
TATGGTGAGTATAAGAATAG+AGG - tig0018459:29363-29382 Msa1366430:CDS 30.0%
CAACTCAAATCAAGGAAAAA+TGG + tig0018459:29519-29538 None:intergenic 30.0%
!! TTTCCTTGATTTGAGTTGAA+AGG - tig0018459:29521-29540 Msa1366430:CDS 30.0%
!! ATTTGAGTTGAAAGGTGTAA+TGG - tig0018459:29529-29548 Msa1366430:CDS 30.0%
ACTTGTAAATTTCGCACATA+AGG + tig0018459:29563-29582 None:intergenic 30.0%
GCAATATTATGAACTCTCAT+TGG + tig0018459:29671-29690 None:intergenic 30.0%
!! CTTCAGTCTTATTTATATGG+AGG - tig0018459:29878-29897 Msa1366430:five_prime_UTR 30.0%
TTATAGTGTGTTTGAGAGTG+GGG + tig0018459:24878-24897 None:intergenic 35.0%
GAGAATAATTGTAGTTGTGC+TGG + tig0018459:24923-24942 None:intergenic 35.0%
!!! CTGTTTTTGAGGTAAGATCT+GGG + tig0018459:25140-25159 None:intergenic 35.0%
!!! ACTGTTTTTGAGGTAAGATC+TGG + tig0018459:25141-25160 None:intergenic 35.0%
!!! CCTCTTTTATGGTGTTGTTT+AGG + tig0018459:25185-25204 None:intergenic 35.0%
CCTAAACAACACCATAAAAG+AGG - tig0018459:25182-25201 Msa1366430:CDS 35.0%
AGTTTGAGAGAGATCAGAAA+TGG + tig0018459:25337-25356 None:intergenic 35.0%
ATCCAAACATGTGTACACAT+TGG + tig0018459:25421-25440 None:intergenic 35.0%
AATGTGTACACATGTTTGGA+TGG - tig0018459:25420-25439 Msa1366430:CDS 35.0%
! TCTGAAACTTTCCCTGAATA+TGG - tig0018459:25570-25589 Msa1366430:CDS 35.0%
TGTAGTAGCTTCCTATCTTT+CGG + tig0018459:25630-25649 None:intergenic 35.0%
TCAAACCAAGTTTGATCTTG+TGG - tig0018459:25662-25681 Msa1366430:CDS 35.0%
! GATCATCTAGCTCACTAATA+TGG - tig0018459:25794-25813 Msa1366430:CDS 35.0%
CCTTATCTCTCTACATTGAA+TGG + tig0018459:25838-25857 None:intergenic 35.0%
CCATTCAATGTAGAGAGATA+AGG - tig0018459:25835-25854 Msa1366430:intron 35.0%
TACAACACCATATTGTGAGA+TGG - tig0018459:25890-25909 Msa1366430:intron 35.0%
TAATATGTCTCCAATCTCCA+TGG + tig0018459:26028-26047 None:intergenic 35.0%
TTTGTGATACACATAAAGGC+TGG - tig0018459:26133-26152 Msa1366430:intron 35.0%
TTGTGATACACATAAAGGCT+GGG - tig0018459:26134-26153 Msa1366430:intron 35.0%
!! TGATTTGCTTAGATGCATGT+GGG - tig0018459:26831-26850 Msa1366430:intron 35.0%
TGCATGTGGGAAAATAACAA+TGG - tig0018459:26844-26863 Msa1366430:intron 35.0%
TAATCTAGAGATTATCCAGG+AGG + tig0018459:26943-26962 None:intergenic 35.0%
! AGAAAAACAACAGAAAGTGC+AGG + tig0018459:27235-27254 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + tig0018459:27559-27578 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - tig0018459:27559-27578 Msa1366430:intron 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + tig0018459:27559-27578 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - tig0018459:27559-27578 Msa1366430:intron 35.0%
GTGGCTAGAATTCACTTATA+AGG - tig0018459:27982-28001 Msa1366430:intron 35.0%
! TATTGGTGGTCCATCTTAAT+TGG - tig0018459:28235-28254 Msa1366430:intron 35.0%
! TCTGATTGATAACAAAGGGA+GGG + tig0018459:28326-28345 None:intergenic 35.0%
! ATCTGATTGATAACAAAGGG+AGG + tig0018459:28327-28346 None:intergenic 35.0%
! TGTTCTTTTCTTTAGTTGGC+TGG + tig0018459:28389-28408 None:intergenic 35.0%
GTTCTCAAAGGTTATACCTT+TGG + tig0018459:28872-28891 None:intergenic 35.0%
TTCCATAAACATCACATTCG+CGG + tig0018459:29020-29039 None:intergenic 35.0%
! AAGAATTTGTTCACTGCACA+AGG - tig0018459:29120-29139 Msa1366430:CDS 35.0%
! AGATTGAAATTCCGGTGTTT+TGG + tig0018459:29161-29180 None:intergenic 35.0%
GATAATTTGATTGATCCAGC+AGG - tig0018459:29297-29316 Msa1366430:CDS 35.0%
! GCTTTGGATACATTGTTCTA+TGG - tig0018459:29345-29364 Msa1366430:CDS 35.0%
ACACCTTTCAACTCAAATCA+AGG + tig0018459:29527-29546 None:intergenic 35.0%
TGGATATACTCATTGGAAGT+CGG - tig0018459:29740-29759 Msa1366430:five_prime_UTR 35.0%
ATTCTCTCCTTTACCATGAG+AGG - tig0018459:24937-24956 Msa1366430:three_prime_UTR 40.0%
TTCTCTCCTTTACCATGAGA+GGG - tig0018459:24938-24957 Msa1366430:three_prime_UTR 40.0%
! TGTTTTCCCTCTCATGGTAA+AGG + tig0018459:24947-24966 None:intergenic 40.0%
TGGATAAGGTTGAGACACAA+AGG + tig0018459:25113-25132 None:intergenic 40.0%
AAGATCTGGGAAAGTGGATA+AGG + tig0018459:25127-25146 None:intergenic 40.0%
!!! CATTTGTGGGACTGTTTTTG+AGG + tig0018459:25151-25170 None:intergenic 40.0%
GGACAGAGCAAATCATTTGT+GGG + tig0018459:25164-25183 None:intergenic 40.0%
AGGACAGAGCAAATCATTTG+TGG + tig0018459:25165-25184 None:intergenic 40.0%
CAATCATCTTCCAATTGCAC+CGG - tig0018459:25210-25229 Msa1366430:CDS 40.0%
!!! GGTTGTTTTGAGTTCGTCAA+TGG + tig0018459:25316-25335 None:intergenic 40.0%
CTTACTGCTAGAAGCTATTG+TGG + tig0018459:25364-25383 None:intergenic 40.0%
GACTGTCAAACTCTACTTAG+TGG - tig0018459:25387-25406 Msa1366430:CDS 40.0%
GACCAATGTGTACACATGTT+TGG - tig0018459:25416-25435 Msa1366430:CDS 40.0%
TCCAGGAACTTTCTTCAACA+TGG + tig0018459:25529-25548 None:intergenic 40.0%
! TGAAAGATGGGTTTCCATCA+TGG - tig0018459:25598-25617 Msa1366430:CDS 40.0%
! GAAAGATGGGTTTCCATCAT+GGG - tig0018459:25599-25618 Msa1366430:CDS 40.0%
TAGTAGCTTCCTATCTTTCG+GGG + tig0018459:25628-25647 None:intergenic 40.0%
GTAGTAGCTTCCTATCTTTC+GGG + tig0018459:25629-25648 None:intergenic 40.0%
AGCAACCACAAGATCAAACT+TGG + tig0018459:25670-25689 None:intergenic 40.0%
GATCTTGTGGTTGCTAAAGA+TGG - tig0018459:25675-25694 Msa1366430:CDS 40.0%
ACAGGCAACTTTACCACTAT+AGG - tig0018459:25699-25718 Msa1366430:CDS 40.0%
AGCAATTGCTTCTCCTATAG+TGG + tig0018459:25715-25734 None:intergenic 40.0%
TACCTAGTTGCGCTAGAATT+TGG + tig0018459:25744-25763 None:intergenic 40.0%
!! CTCACAATATGGTGTTGTAG+CGG + tig0018459:25889-25908 None:intergenic 40.0%
TGTGATACACATAAAGGCTG+GGG - tig0018459:26135-26154 Msa1366430:intron 40.0%
ATGTTAGTTGGAGATGGGAT+TGG - tig0018459:26202-26221 Msa1366430:intron 40.0%
CCAGCAGAAATGTTGTAGAT+GGG - tig0018459:26242-26261 Msa1366430:intron 40.0%
!! GTGATTTGCTTAGATGCATG+TGG - tig0018459:26830-26849 Msa1366430:intron 40.0%
!!! GTCAAATTTTGGTTACCTCC+TGG - tig0018459:26925-26944 Msa1366430:intron 40.0%
ATTCTAATGCAGCTCTGCAT+GGG + tig0018459:27185-27204 None:intergenic 40.0%
TATTCTAATGCAGCTCTGCA+TGG + tig0018459:27186-27205 None:intergenic 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + tig0018459:27563-27582 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + tig0018459:27562-27581 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - tig0018459:27562-27581 Msa1366430:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - tig0018459:27563-27582 Msa1366430:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + tig0018459:27563-27582 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + tig0018459:27562-27581 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - tig0018459:27562-27581 Msa1366430:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - tig0018459:27563-27582 Msa1366430:intron 40.0%
ATTATTATATGCAGGGGTCG+GGG + tig0018459:28036-28055 None:intergenic 40.0%
CATTATTATATGCAGGGGTC+GGG + tig0018459:28037-28056 None:intergenic 40.0%
GCATTATTATATGCAGGGGT+CGG + tig0018459:28038-28057 None:intergenic 40.0%
AAAATAGGAATTGACCGGTC+CGG + tig0018459:28088-28107 None:intergenic 40.0%
TAACAAAGGGAGGGAAAACT+GGG + tig0018459:28317-28336 None:intergenic 40.0%
ATAACAAAGGGAGGGAAAAC+TGG + tig0018459:28318-28337 None:intergenic 40.0%
! TCTTTTCTTTAGTTGGCTGG+TGG + tig0018459:28386-28405 None:intergenic 40.0%
GAGAGACCAAAAAGAGAAAG+AGG - tig0018459:28645-28664 Msa1366430:intron 40.0%
GGAGACAAATTCATAGCCAA+AGG - tig0018459:28853-28872 Msa1366430:intron 40.0%
! ATAACCTTTGAGAACTCAGC+CGG - tig0018459:28877-28896 Msa1366430:intron 40.0%
CACAAAGCTACATTGGTAGA+AGG + tig0018459:28953-28972 None:intergenic 40.0%
! CTTCTACCAATGTAGCTTTG+TGG - tig0018459:28951-28970 Msa1366430:CDS 40.0%
TACCGCGAATGTGATGTTTA+TGG - tig0018459:29015-29034 Msa1366430:CDS 40.0%
GGAACTGTAGACTTCATCTT+TGG - tig0018459:29036-29055 Msa1366430:CDS 40.0%
GAAGATCCTAACCAAAACAC+CGG - tig0018459:29147-29166 Msa1366430:CDS 40.0%
!!! GAAATTCCGGTGTTTTGGTT+AGG + tig0018459:29156-29175 None:intergenic 40.0%
TTGTACTGGAATCAAATCCG+CGG + tig0018459:29205-29224 None:intergenic 40.0%
! CTCTTGAACGTTGATTGTAC+TGG + tig0018459:29219-29238 None:intergenic 40.0%
TCAACGTTCAAGAGTTACCT+CGG - tig0018459:29225-29244 Msa1366430:CDS 40.0%
ATTTGATTGATCCAGCAGGA+TGG - tig0018459:29301-29320 Msa1366430:CDS 40.0%
ATGGAATGGAACGTTTGCTT+TGG - tig0018459:29329-29348 Msa1366430:CDS 40.0%
GAGTATAAGAATAGAGGTCC+TGG - tig0018459:29369-29388 Msa1366430:CDS 40.0%
AGTCATTACAAACACTACCG+AGG - tig0018459:29431-29450 Msa1366430:CDS 40.0%
AATGAATGGTTGAGCTCTAC+TGG - tig0018459:29489-29508 Msa1366430:CDS 40.0%
GGTTATAAAGCAGACTTACG+TGG + tig0018459:29693-29712 None:intergenic 40.0%
TATGGAGGATTTGATAGGCT+TGG - tig0018459:29893-29912 Msa1366430:five_prime_UTR 40.0%
! ATGCTGATTGGGCTACTGTT+TGG + tig0018459:25068-25087 None:intergenic 45.0%
! TGTTCCTTCGCATGCTGATT+GGG + tig0018459:25079-25098 None:intergenic 45.0%
AGGTTGAGACACAAAGGTCT+GGG + tig0018459:25107-25126 None:intergenic 45.0%
AAGGTTGAGACACAAAGGTC+TGG + tig0018459:25108-25127 None:intergenic 45.0%
TGAGGTAAGATCTGGGAAAG+TGG + tig0018459:25133-25152 None:intergenic 45.0%
GCCATGTTGAAGAAAGTTCC+TGG - tig0018459:25525-25544 Msa1366430:CDS 45.0%
! GAAGCTTTAGTCTTCACTCC+AGG + tig0018459:25546-25565 None:intergenic 45.0%
CTCCAAATTCTAGCGCAACT+AGG - tig0018459:25739-25758 Msa1366430:CDS 45.0%
CCATGGACCATGTTCAATTG+TGG + tig0018459:26011-26030 None:intergenic 45.0%
CCACAATTGAACATGGTCCA+TGG - tig0018459:26008-26027 Msa1366430:intron 45.0%
TGAACATGGTCCATGGAGAT+TGG - tig0018459:26015-26034 Msa1366430:intron 45.0%
! TGGGGCTTACTTTGAAAACG+TGG - tig0018459:26153-26172 Msa1366430:intron 45.0%
GATTGGACAGACTGTTGTGA+AGG - tig0018459:26219-26238 Msa1366430:intron 45.0%
GCCAGCAGAAATGTTGTAGA+TGG - tig0018459:26241-26260 Msa1366430:intron 45.0%
CCCATCTACAACATTTCTGC+TGG + tig0018459:26245-26264 None:intergenic 45.0%
GCAGAAATGTTGTAGATGGG+TGG - tig0018459:26245-26264 Msa1366430:intron 45.0%
AAAGACCCTTCCACTGAAAC+TGG - tig0018459:26965-26984 Msa1366430:intron 45.0%
AAGACCCTTCCACTGAAACT+GGG - tig0018459:26966-26985 Msa1366430:intron 45.0%
GCACCCACCTAAAAACACTA+AGG - tig0018459:27369-27388 Msa1366430:intron 45.0%
GCACCCACCTAAAAACACTA+AGG + tig0018459:27369-27388 None:intergenic 45.0%
GCACCCACCTAAAAACACTA+AGG - tig0018459:27369-27388 Msa1366430:intron 45.0%
GCACCCACCTAAAAACACTA+AGG + tig0018459:27369-27388 None:intergenic 45.0%
TATCAGACATGTGACGTGTG+AGG - tig0018459:28188-28207 Msa1366430:intron 45.0%
!! TTGGTGGTTTTCAGCTGTTG+TGG - tig0018459:28831-28850 Msa1366430:intron 45.0%
! TGGTGGTTTTCAGCTGTTGT+GGG - tig0018459:28832-28851 Msa1366430:intron 45.0%
TAGCAAACATCAAGCGGTAG+CGG - tig0018459:28903-28922 Msa1366430:intron 45.0%
TTGGTAGAAGGCTGAGAAGT+CGG + tig0018459:28941-28960 None:intergenic 45.0%
GGTAAGCCACAAAGCTACAT+TGG + tig0018459:28960-28979 None:intergenic 45.0%
!! ATGTAGCTTTGTGGCTTACC+AGG - tig0018459:28960-28979 Msa1366430:CDS 45.0%
CACATTCGCGGTAGAATTGA+CGG + tig0018459:29008-29027 None:intergenic 45.0%
CTTCATCTTTGGCAATGCAG+CGG - tig0018459:29047-29066 Msa1366430:CDS 45.0%
GTGCATATAGGTTGCAGTTC+TGG + tig0018459:29080-29099 None:intergenic 45.0%
TTGTAAAATTGCAGCTGCCG+CGG - tig0018459:29185-29204 Msa1366430:CDS 45.0%
!!! ATTTTTTCCAAGGACGACCG+AGG + tig0018459:29245-29264 None:intergenic 45.0%
ATCCAGCAGGATGGTTAGAA+TGG - tig0018459:29310-29329 Msa1366430:CDS 45.0%
TTCCATTCTAACCATCCTGC+TGG + tig0018459:29315-29334 None:intergenic 45.0%
GCAGGATGGTTAGAATGGAA+TGG - tig0018459:29315-29334 Msa1366430:CDS 45.0%
ATACAAGTGCCAGAGTTACG+TGG - tig0018459:29397-29416 Msa1366430:CDS 45.0%
!! AACAGTGAACTGACTTGCCT+CGG + tig0018459:29451-29470 None:intergenic 45.0%
ATAGGCTTGGCAACGATTGT+CGG - tig0018459:29906-29925 Msa1366430:five_prime_UTR 45.0%
!!! AATTATTTTATCTTTTTTAA+GGG + tig0018459:26420-26439 None:intergenic 5.0%
!!! TAAACTTTATTTTAATTAAA+AGG + tig0018459:27489-27508 None:intergenic 5.0%
!!! TTTAAAATTTTAAAATCTAT+TGG - tig0018459:28218-28237 Msa1366430:intron 5.0%
!!! TGGTGCTGTTTTCCCTCTCA+TGG + tig0018459:24953-24972 None:intergenic 50.0%
AGGGAAAACAGCACCATTGC+TGG - tig0018459:24957-24976 Msa1366430:three_prime_UTR 50.0%
ATTGGCATGAGAGCCAGCAA+TGG + tig0018459:24973-24992 None:intergenic 50.0%
GTGTTCCTTCGCATGCTGAT+TGG + tig0018459:25080-25099 None:intergenic 50.0%
AAGTCGAAGTCCGGTGCAAT+TGG + tig0018459:25223-25242 None:intergenic 50.0%
ACTTGACCAAAGAGCCCTTG+AGG - tig0018459:25266-25285 Msa1366430:CDS 50.0%
CACAATCCTCAAGGGCTCTT+TGG + tig0018459:25275-25294 None:intergenic 50.0%
GTGGTTGCTAAAGATGGCAC+AGG - tig0018459:25681-25700 Msa1366430:CDS 50.0%
!! ATATGGTGTTGCACACGTCG+TGG - tig0018459:25811-25830 Msa1366430:CDS 50.0%
AGACCCTTCCACTGAAACTG+GGG - tig0018459:26967-26986 Msa1366430:intron 50.0%
AACCCCCAGTTTCAGTGGAA+GGG + tig0018459:26973-26992 None:intergenic 50.0%
TAACCCCCAGTTTCAGTGGA+AGG + tig0018459:26974-26993 None:intergenic 50.0%
CTGTTAACCCCCAGTTTCAG+TGG + tig0018459:26978-26997 None:intergenic 50.0%
TTGAAATCACGGACCAGCGT+CGG - tig0018459:27263-27282 Msa1366430:intron 50.0%
!! AGCGTCGGTTGTCTGACAAA+GGG - tig0018459:27278-27297 Msa1366430:intron 50.0%
GTGGGTGCAAGTTAACAGTG+GGG + tig0018459:27602-27621 None:intergenic 50.0%
GGTGGGTGCAAGTTAACAGT+GGG + tig0018459:27603-27622 None:intergenic 50.0%
AGGTGGGTGCAAGTTAACAG+TGG + tig0018459:27579-27598 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+AGG + tig0018459:28066-28085 None:intergenic 50.0%
ACCAACTGAGCTATGCTCAC+CGG - tig0018459:28066-28085 Msa1366430:intron 50.0%
GGAGGGAAAACTGGGTACAT+AGG + tig0018459:28309-28328 None:intergenic 50.0%
! CGCTTGATGTTTGCTAGGTC+CGG + tig0018459:28899-28918 None:intergenic 50.0%
CGGACCTAGCAAACATCAAG+CGG - tig0018459:28897-28916 Msa1366430:intron 50.0%
GCTACCGCTTGATGTTTGCT+AGG + tig0018459:28904-28923 None:intergenic 50.0%
!! AGTGGACATAGAGAGTGTCC+TGG + tig0018459:28981-29000 None:intergenic 50.0%
TTCGCGGTAGAATTGACGGA+GGG + tig0018459:29004-29023 None:intergenic 50.0%
ATTCGCGGTAGAATTGACGG+AGG + tig0018459:29005-29024 None:intergenic 50.0%
GATCGGGTTTGCGTGCATAT+AGG + tig0018459:29092-29111 None:intergenic 50.0%
CTGGCACTTGTATTCGAACC+AGG + tig0018459:29390-29409 None:intergenic 50.0%
ATAACCTGGCCACGTAACTC+TGG + tig0018459:29409-29428 None:intergenic 50.0%
GTAGCCCAATCAGCATGCGA+AGG - tig0018459:25072-25091 Msa1366430:three_prime_UTR 55.0%
TCTTTCGGGGACACCCATGA+TGG + tig0018459:25615-25634 None:intergenic 55.0%
CATGGGTGTCCCCGAAAGAT+AGG - tig0018459:25616-25635 Msa1366430:CDS 55.0%
GACCCTTCCACTGAAACTGG+GGG - tig0018459:26968-26987 Msa1366430:intron 55.0%
CTTTGTCAGACAACCGACGC+TGG + tig0018459:27279-27298 None:intergenic 55.0%
!! CAGCGTCGGTTGTCTGACAA+AGG - tig0018459:27277-27296 Msa1366430:intron 55.0%
TCCGGTGAGCATAGCTCAGT+TGG + tig0018459:28070-28089 None:intergenic 55.0%
AGGTCCGGCTGAGTTCTCAA+AGG + tig0018459:28884-28903 None:intergenic 55.0%
! CAAGCGGTAGCGGTGAGAAA+TGG - tig0018459:28913-28932 Msa1366430:intron 55.0%
GGTAGAATTGACGGAGGGAG+TGG + tig0018459:28999-29018 None:intergenic 55.0%
CATCTTTGGCAATGCAGCGG+TGG - tig0018459:29050-29069 Msa1366430:CDS 55.0%
AGAGTTACCTCGGTCGTCCT+TGG - tig0018459:29235-29254 Msa1366430:CDS 55.0%
TGCACCGGACTTCGACTTCG+CGG - tig0018459:25225-25244 Msa1366430:CDS 60.0%
TCGACCGCGAAGTCGAAGTC+CGG + tig0018459:25232-25251 None:intergenic 60.0%
CTGAGCTATGCTCACCGGAC+CGG - tig0018459:28071-28090 Msa1366430:intron 60.0%
AGTGCCAGAGTTACGTGGCC+AGG - tig0018459:29402-29421 Msa1366430:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0018459 gene 24673 30005 24673 ID=Msa1366430;Name=Msa1366430
tig0018459 mRNA 24673 30005 24673 ID=Msa1366430-mRNA-1;Parent=Msa1366430;Name=Msa1366430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=279|1|1|1|1|1|3|466|554
tig0018459 exon 24673 25833 24673 ID=Msa1366430-mRNA-1:exon:15173;Parent=Msa1366430-mRNA-1
tig0018459 exon 28386 28546 28386 ID=Msa1366430-mRNA-1:exon:15172;Parent=Msa1366430-mRNA-1
tig0018459 exon 28918 30005 28918 ID=Msa1366430-mRNA-1:exon:15171;Parent=Msa1366430-mRNA-1
tig0018459 five_prime_UTR 29727 30005 29727 ID=Msa1366430-mRNA-1:five_prime_utr;Parent=Msa1366430-mRNA-1
tig0018459 CDS 28918 29726 28918 ID=Msa1366430-mRNA-1:cds;Parent=Msa1366430-mRNA-1
tig0018459 CDS 28386 28546 28386 ID=Msa1366430-mRNA-1:cds;Parent=Msa1366430-mRNA-1
tig0018459 CDS 25139 25833 25139 ID=Msa1366430-mRNA-1:cds;Parent=Msa1366430-mRNA-1
tig0018459 three_prime_UTR 24673 25138 24673 ID=Msa1366430-mRNA-1:three_prime_utr;Parent=Msa1366430-mRNA-1
Gene Sequence

>Msa1366430

ATGAGAGGGAAAACAGCACCATTGCTGGCTCTCATGCCAATTCTCTCCACAATTTTAGTTCTAATATTTTCAGTAACCAATTTCTCAAAATTAGCAACAGCAACAGCAACACTCCAAACAGTAGCCCAATCAGCATGCGAAGGAACACTCTACCCAGACCTTTGTGTCTCAACCTTATCCACTTTCCCAGATCTTACCTCAAAAACAGTCCCACAAATGATTTGCTCTGTCCTAAACAACACCATAAAAGAGGTTAAACAATCATCTTCCAATTGCACCGGACTTCGACTTCGCGGTCGAAGTGCACAAAGCATACTTGACCAAAGAGCCCTTGAGGATTGTGTTAATTTATTTGACACTACCATTGACGAACTCAAAACAACCATTTCTGATCTCTCTCAAACTCAAACCACAATAGCTTCTAGCAGTAAGCGTGACTGTCAAACTCTACTTAGTGGTGCAATGACCAATGTGTACACATGTTTGGATGGTTTTGCATATAGTAAATCAAAAATGAGAAAAAAAATTGAGGCCAAGTTGAATGATATTTCTAGTCACGTTAGTAACTCACTTGCCATGTTGAAGAAAGTTCCTGGAGTGAAGACTAAAGCTTCTGAGTCTGAAACTTTCCCTGAATATGGTAAAGTGAAAGATGGGTTTCCATCATGGGTGTCCCCGAAAGATAGGAAGCTACTACAAGCTGCAGTGAATCAAACCAAGTTTGATCTTGTGGTTGCTAAAGATGGCACAGGCAACTTTACCACTATAGGAGAAGCAATTGCTGCAGCTCCAAATTCTAGCGCAACTAGATTTGTGATACACATAAAGGCTGGGGCTTACTTTGAAAACGTGGAAGTGATAAAGAAGAAAACCAATTTGATGTTAGTTGGAGATGGGATTGGACAGACTGTTGTGAAGGCCAGCAGAAATGTTGTAGATGGGTGGACCACTTTCCAATCATCTACTTTTGCTGTTGTGGGAGACAAATTCATAGCCAAAGGTATAACCTTTGAGAACTCAGCCGGACCTAGCAAACATCAAGCGGTAGCGGTGAGAAATGGCGCCGACTTCTCAGCCTTCTACCAATGTAGCTTTGTGGCTTACCAGGACACTCTCTATGTCCACTCCCTCCGTCAATTCTACCGCGAATGTGATGTTTATGGAACTGTAGACTTCATCTTTGGCAATGCAGCGGTGGTATTCCAGAACTGCAACCTATATGCACGCAAACCCGATCCAAAGCAAAAGAATTTGTTCACTGCACAAGGCAGAGAAGATCCTAACCAAAACACCGGAATTTCAATCTTGAATTGTAAAATTGCAGCTGCCGCGGATTTGATTCCAGTACAATCAACGTTCAAGAGTTACCTCGGTCGTCCTTGGAAAAAATATTCAAGAACTGTTTATCTGAATTCTTTTATAGATAATTTGATTGATCCAGCAGGATGGTTAGAATGGAATGGAACGTTTGCTTTGGATACATTGTTCTATGGTGAGTATAAGAATAGAGGTCCTGGTTCGAATACAAGTGCCAGAGTTACGTGGCCAGGTTATAAAGTCATTACAAACACTACCGAGGCAAGTCAGTTCACTGTTAGACAATTTATACAAGGAAATGAATGGTTGAGCTCTACTGGAGTTCCATTTTTCCTTGATTTGAGTTGA
Protein sequence

>Msa1366430

MRGKTAPLLALMPILSTILVLIFSVTNFSKLATATATLQTVAQSACEGTLYPDLCVSTLSTFPDLTSKTVPQMICSVLNNTIKEVKQSSSNCTGLRLRGRSAQSILDQRALEDCVNLFDTTIDELKTTISDLSQTQTTIASSSKRDCQTLLSGAMTNVYTCLDGFAYSKSKMRKKIEAKLNDISSHVSNSLAMLKKVPGVKTKASESETFPEYGKVKDGFPSWVSPKDRKLLQAAVNQTKFDLVVAKDGTGNFTTIGEAIAAAPNSSATRFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGQTVVKASRNVVDGWTTFQSSTFAVVGDKFIAKGITFENSAGPSKHQAVAVRNGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPKQKNLFTAQGREDPNQNTGISILNCKIAAAADLIPVQSTFKSYLGRPWKKYSRTVYLNSFIDNLIDPAGWLEWNGTFALDTLFYGEYKNRGPGSNTSARVTWPGYKVITNTTEASQFTVRQFIQGNEWLSSTGVPFFLDLS*