AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1378120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1378120 MtrunA17_Chr8g0388051 98.565 627 9 0 1 627 1 627 0.0 1286
Msa1378120 MtrunA17_Chr3g0119371 60.083 481 190 1 13 491 25 505 0.0 634
Msa1378120 MtrunA17_Chr5g0439311 58.434 498 198 3 1 491 1 496 0.0 633
Msa1378120 MtrunA17_Chr4g0038131 50.327 612 290 8 26 624 26 636 0.0 619
Msa1378120 MtrunA17_Chr1g0164201 53.623 483 214 5 13 492 7 482 6.79e-176 508
Msa1378120 MtrunA17_Chr3g0145261 51.178 467 217 6 27 489 23 482 7.35e-162 472
Msa1378120 MtrunA17_Chr1g0195271 52.220 473 214 7 27 496 38 501 2.46e-160 469
Msa1378120 MtrunA17_Chr3g0119821 49.686 477 228 8 21 493 27 495 1.56e-158 464
Msa1378120 MtrunA17_Chr8g0391391 50.000 474 224 8 24 492 26 491 3.31e-157 461
Msa1378120 MtrunA17_Chr5g0444721 55.041 367 160 2 128 491 200 564 4.05e-145 432
Msa1378120 MtrunA17_Chr5g0444721 55.801 181 72 3 4 180 13 189 1.62e-57 203
Msa1378120 MtrunA17_Chr4g0018301 46.737 475 235 8 17 489 37 495 2.78e-144 428
Msa1378120 MtrunA17_Chr5g0397201 47.679 474 229 6 24 493 36 494 3.60e-144 428
Msa1378120 MtrunA17_Chr3g0086311 46.695 469 234 5 25 492 27 480 3.89e-140 417
Msa1378120 MtrunA17_Chr3g0080171 47.669 472 231 8 28 495 25 484 4.73e-140 416
Msa1378120 MtrunA17_Chr4g0018361 44.378 498 252 9 4 489 3 487 6.89e-136 406
Msa1378120 MtrunA17_Chr3g0142501 46.695 469 236 10 29 491 58 518 1.74e-132 399
Msa1378120 MtrunA17_Chr5g0397181 47.188 409 197 6 89 493 1 394 6.25e-121 364
Msa1378120 MtrunA17_Chr8g0372031 44.872 468 246 8 29 491 64 524 1.53e-119 365
Msa1378120 MtrunA17_Chr3g0136381 47.397 365 177 4 25 388 27 377 7.71e-112 342
Msa1378120 MtrunA17_Chr2g0291461 43.585 491 242 14 28 493 111 591 1.60e-108 340
Msa1378120 MtrunA17_Chr3g0120661 41.379 493 253 17 28 496 116 596 6.63e-97 310
Msa1378120 MtrunA17_Chr3g0126111 38.211 492 261 16 28 491 107 583 5.68e-90 291
Msa1378120 MtrunA17_Chr4g0018341 43.860 285 145 7 208 489 2 274 3.38e-72 234
Msa1378120 MtrunA17_Chr4g0018351 52.747 182 84 1 28 209 30 209 4.69e-59 197
Msa1378120 MtrunA17_Chr1g0164181 56.906 181 73 2 70 246 3 182 8.43e-56 192
Msa1378120 MtrunA17_Chr1g0164181 49.068 161 81 1 329 489 170 329 3.29e-47 169
Msa1378120 MtrunA17_Chr7g0269571 44.134 179 88 2 335 502 43 220 3.20e-45 160
Msa1378120 MtrunA17_Chr4g0022271 43.571 140 74 1 335 474 20 154 3.67e-33 125
Msa1378120 MtrunA17_Chr4g0072811 40.789 152 85 3 342 492 19 166 1.57e-29 115
Msa1378120 MtrunA17_Chr3g0136371 46.809 94 49 1 388 481 1 93 1.79e-22 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1378120 AT1G64390.1 78.239 602 127 2 26 627 23 620 0.0 990
Msa1378120 AT4G11050.3 75.541 601 147 0 26 626 24 624 0.0 956
Msa1378120 AT4G11050.1 75.581 602 146 1 26 626 24 625 0.0 954
Msa1378120 AT4G11050.2 77.381 504 114 0 26 529 24 527 0.0 818
Msa1378120 AT2G32990.1 59.100 489 198 1 4 490 15 503 0.0 619
Msa1378120 AT1G48930.1 52.231 605 277 5 27 625 29 627 0.0 594
Msa1378120 AT2G44550.1 53.002 483 220 3 7 489 12 487 6.67e-174 503
Msa1378120 AT2G44570.1 51.633 490 227 5 7 492 9 492 1.42e-172 500
Msa1378120 AT2G44540.1 51.959 485 227 3 7 491 12 490 2.14e-171 497
Msa1378120 AT2G44560.1 53.333 480 215 4 16 492 18 491 1.01e-166 485
Msa1378120 AT1G70710.1 48.583 494 244 6 1 492 1 486 2.91e-159 466
Msa1378120 AT4G02290.1 51.586 473 217 7 27 496 51 514 1.09e-158 466
Msa1378120 AT1G02800.1 52.350 468 211 7 27 492 42 499 6.60e-158 463
Msa1378120 AT1G23210.1 48.861 483 237 6 13 493 13 487 5.42e-155 455
Msa1378120 AT4G39010.1 47.619 483 240 8 19 496 21 495 2.38e-150 444
Msa1378120 AT4G23560.1 47.800 500 236 9 1 496 1 479 2.26e-144 427
Msa1378120 AT1G71380.1 47.571 494 241 9 8 495 1 482 9.37e-144 426
Msa1378120 AT4G09740.1 48.081 495 232 9 1 491 1 474 1.47e-143 426
Msa1378120 AT1G19940.2 48.807 461 226 7 28 486 48 500 4.67e-141 421
Msa1378120 AT1G19940.1 48.807 461 226 7 28 486 48 500 4.67e-141 421
Msa1378120 AT3G43860.2 46.581 468 234 5 28 494 34 486 1.60e-140 418
Msa1378120 AT3G43860.1 46.581 468 234 5 28 494 34 486 1.60e-140 418
Msa1378120 AT1G22880.1 48.660 485 230 10 12 489 4 476 2.10e-140 418
Msa1378120 AT4G39000.1 47.639 487 243 7 8 489 5 484 1.46e-135 405
Msa1378120 AT1G75680.1 47.149 456 231 7 29 482 58 505 2.72e-132 398
Msa1378120 AT4G38990.2 44.960 496 247 11 7 489 5 487 3.58e-129 389
Msa1378120 AT4G02290.2 48.418 411 200 7 89 496 1 402 1.95e-123 371
Msa1378120 AT2G44570.2 49.482 386 185 5 7 388 9 388 1.18e-120 364
Msa1378120 AT1G22880.2 46.782 404 200 8 89 489 1 392 6.21e-112 342
Msa1378120 AT4G39010.2 46.524 374 188 7 19 387 21 387 1.84e-110 337
Msa1378120 AT1G19940.3 49.311 363 179 5 28 388 48 407 5.06e-109 335
Msa1378120 AT5G49720.1 42.394 493 245 15 28 493 108 588 2.30e-99 316
Msa1378120 AT4G24260.1 40.891 494 251 16 28 493 108 588 7.41e-92 296
Msa1378120 AT1G65610.1 38.367 490 271 14 28 496 116 595 4.05e-91 295
Msa1378120 AT1G22880.3 51.899 316 135 8 12 321 4 308 9.24e-87 274
Msa1378120 AT4G38990.1 43.646 362 171 7 7 366 5 335 2.42e-83 266
Msa1378120 AT4G24260.3 37.984 387 208 13 28 388 108 488 1.27e-54 194
Msa1378120 AT4G24260.2 40.000 315 161 10 28 319 108 417 3.44e-52 186

Find 213 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACACAGCTGACAAATTT+TGG 0.076196 tig0020047:+145941 None:intergenic
AATTACATTAAATAATTTAA+TGG 0.144030 tig0020047:+149944 None:intergenic
CTTTCAATATCCAAGCTTTA+TGG 0.163235 tig0020047:-145290 Msa1378120:CDS
GCAGGGGATAATGTGAAATT+TGG 0.209337 tig0020047:-149323 Msa1378120:CDS
CCTGGGGATGGACTTGTCTT+TGG 0.241819 tig0020047:+145559 None:intergenic
AGAATAGACAGTGGCTAAAA+AGG 0.248840 tig0020047:+146371 None:intergenic
ATTGAGAGACTTGAGATTCT+TGG 0.259352 tig0020047:+145313 None:intergenic
GCTCGAGGGTCTATATATTA+AGG 0.263755 tig0020047:+149860 None:intergenic
CTTCCATCATTATCCTTTGC+TGG 0.274730 tig0020047:-149593 Msa1378120:CDS
CACCGACCGTCGCGCTTATA+AGG 0.277946 tig0020047:-148812 Msa1378120:CDS
TACAACAATGCTCCTCTTAT+AGG 0.283700 tig0020047:-145785 Msa1378120:CDS
TCTGACTACCTTGCTTCTTC+TGG 0.283844 tig0020047:-146351 Msa1378120:CDS
CTTCAGGTGGACTACATTCT+TGG 0.288738 tig0020047:-146064 Msa1378120:intron
AATGAACTTCTTAACATGTT+AGG 0.300695 tig0020047:-144813 Msa1378120:three_prime_UTR
GGCTATAACCAGCTCCTTCC+AGG 0.305074 tig0020047:-145731 Msa1378120:intron
TCCATCTTTGACGGTATATT+AGG 0.306267 tig0020047:+146421 None:intergenic
TCGTATAATCCCGCTAATTA+AGG 0.306702 tig0020047:+149751 None:intergenic
CTCATAACCAAAGAGTTTCA+TGG 0.313102 tig0020047:-149499 Msa1378120:CDS
GGATGGACTTGTCTTTGGTT+TGG 0.324829 tig0020047:+145564 None:intergenic
ACAAGTTACATGGTTGGATA+TGG 0.330317 tig0020047:-146025 Msa1378120:CDS
GAGATCTCCATGAAACTCTT+TGG 0.338799 tig0020047:+149492 None:intergenic
TTATGCTGGCAATGCTTGTT+TGG 0.341209 tig0020047:-144676 Msa1378120:three_prime_UTR
CCAAGCTTTATGGTCCAATC+TGG 0.342042 tig0020047:-145280 Msa1378120:CDS
CATGAAACTCTTTGGTTATG+AGG 0.347981 tig0020047:+149500 None:intergenic
TAGCACAAACTGTTTATATA+TGG 0.351194 tig0020047:+144712 None:intergenic
AGAAACTTGAGATGTGCTTC+TGG 0.351844 tig0020047:-146327 Msa1378120:CDS
CCTCAACCTAATCTTCTCTA+TGG 0.353090 tig0020047:-149164 Msa1378120:CDS
CAAGGTAATCCAAGTAATAT+TGG 0.354348 tig0020047:+146792 None:intergenic
AGGAACTTGTGGCAAATTGC+AGG 0.357481 tig0020047:+146394 None:intergenic
GGAGCATTGTTGTAGGTTGC+TGG 0.357895 tig0020047:+145794 None:intergenic
GGCAAATGACTGAATTTAGT+TGG 0.360328 tig0020047:-146736 Msa1378120:CDS
TCATGGAGTATCATTGAATA+TGG 0.364133 tig0020047:-149269 Msa1378120:CDS
GCGCGCAGGACGAATTGCTC+TGG 0.369511 tig0020047:-146847 Msa1378120:intron
CAGGGGATAATGTGAAATTT+GGG 0.374704 tig0020047:-149322 Msa1378120:CDS
TTGGATTACCTTGGTAGAAA+TGG 0.375820 tig0020047:-146782 Msa1378120:CDS
ATCTGGGGACTCGCAAAGTT+TGG 0.376704 tig0020047:-145263 Msa1378120:CDS
TTGAGATATATGAGGTCTAA+TGG 0.382934 tig0020047:-144606 Msa1378120:three_prime_UTR
GTTTCATGGAGATCTCATTC+TGG 0.384017 tig0020047:-149485 Msa1378120:CDS
TTTGCTGGTGGCCATGACTA+TGG 0.386715 tig0020047:-149578 Msa1378120:CDS
TTCTTTGAAGCTCAGAGATC+TGG 0.394177 tig0020047:-149530 Msa1378120:CDS
TGGCCTGAGAACAAGCGATT+TGG 0.396455 tig0020047:-145127 Msa1378120:exon
GAAGAGAAGAGTACAGGGAT+TGG 0.399049 tig0020047:+149827 None:intergenic
CATAGCGGCGGCGGTTTCTC+CGG 0.399280 tig0020047:+148759 None:intergenic
ACCATGTAACTTGTAGCTCT+TGG 0.401704 tig0020047:+146034 None:intergenic
CCAAAATTTGTCAGCTGTGT+TGG 0.401906 tig0020047:-145941 Msa1378120:CDS
GAGAGAGAAGAGAAGAGTAC+AGG 0.402419 tig0020047:+149821 None:intergenic
GTGTTGGAGGTTATGCTACT+TGG 0.404315 tig0020047:-145925 Msa1378120:CDS
AATCCTGGGTCGGATCTTGC+CGG 0.417966 tig0020047:-148778 Msa1378120:CDS
TTCATAGTTCTTTCTTTCAT+CGG 0.418775 tig0020047:+145826 None:intergenic
AAACCAAATCGCTTGTTCTC+AGG 0.419787 tig0020047:+145124 None:intergenic
AGCAGCAGCCATAGCGGCGG+CGG 0.422074 tig0020047:+148750 None:intergenic
AGCAGAAAATGACCAGCTCT+TGG 0.423043 tig0020047:-145391 Msa1378120:CDS
GAATGTTGCTTGGTAACAAC+AGG 0.424815 tig0020047:+145592 None:intergenic
AGTTGGGATGTTAAGTATCC+TGG 0.425588 tig0020047:-146719 Msa1378120:CDS
CGGAGAAACCGCCGCCGCTA+TGG 0.426804 tig0020047:-148758 Msa1378120:CDS
CCATGTAACTTGTAGCTCTT+GGG 0.429115 tig0020047:+146035 None:intergenic
CTCGAGGGTCTATATATTAA+GGG 0.430219 tig0020047:+149861 None:intergenic
CCTCTGTGGTGAACTCTTTG+AGG 0.436320 tig0020047:+145992 None:intergenic
AAGGTTGATCCAAGTAATCC+TGG 0.439286 tig0020047:-148793 Msa1378120:CDS
AGATCCGACCCAGGATTACT+TGG 0.447273 tig0020047:+148784 None:intergenic
AAGGAGAGAAGCTGGGAAGA+AGG 0.450378 tig0020047:+146297 None:intergenic
AAAATTTGTTGAATGCAGTT+AGG 0.453192 tig0020047:+149669 None:intergenic
ATGCCATGGAAGCTGTGAAA+TGG 0.453582 tig0020047:-149214 Msa1378120:CDS
GTAACAACAGGCTTACGAAC+TGG 0.454247 tig0020047:+145604 None:intergenic
CACCAGCTTTCCCTTGCATC+AGG 0.455015 tig0020047:+146544 None:intergenic
ACCTCTCCATAGAGAAGATT+AGG 0.455717 tig0020047:+149158 None:intergenic
ATCTAACAACCAATATTACT+TGG 0.456025 tig0020047:-146801 Msa1378120:CDS
CGCGCAGGACGAATTGCTCT+GGG 0.457142 tig0020047:-146846 Msa1378120:intron
TGCCATGGAAGCTGTGAAAT+GGG 0.457644 tig0020047:-149213 Msa1378120:CDS
GGCATGACGGAGGAGTTCTC+TGG 0.457951 tig0020047:+148693 None:intergenic
AATAGATAGATTATATAAGA+TGG 0.458680 tig0020047:-144978 Msa1378120:three_prime_UTR
ACCAGCTCTTGGGTTGCAAA+TGG 0.462069 tig0020047:-145380 Msa1378120:CDS
AAAATACACAAGAGAAGAAA+AGG 0.464011 tig0020047:+145028 None:intergenic
GGATTCTCTCCTTAATTAGC+GGG 0.467687 tig0020047:-149760 Msa1378120:five_prime_UTR
ACTTTGCAAAGGAGAGAAGC+TGG 0.472670 tig0020047:+146289 None:intergenic
CAAGCTTTATGGTCCAATCT+GGG 0.473029 tig0020047:-145279 Msa1378120:CDS
GCAGAAAATGACCAGCTCTT+GGG 0.474408 tig0020047:-145390 Msa1378120:CDS
GCAAATGACTGAATTTAGTT+GGG 0.474466 tig0020047:-146735 Msa1378120:CDS
TCCATTTGCAACCCAAGAGC+TGG 0.474926 tig0020047:+145379 None:intergenic
AACTTTGCGAGTCCCCAGAT+TGG 0.476253 tig0020047:+145266 None:intergenic
TATAAGAGGAGCATTGTTGT+AGG 0.476603 tig0020047:+145787 None:intergenic
TCTCTCCTTTGCAAAGTCTC+AGG 0.480867 tig0020047:-146283 Msa1378120:intron
GGTGACTCCATGGGTGGAAC+TGG 0.481443 tig0020047:-146761 Msa1378120:CDS
AGGAGAGAAGCTGGGAAGAA+GGG 0.482100 tig0020047:+146298 None:intergenic
GCCTAATATACCGTCAAAGA+TGG 0.483382 tig0020047:-146422 Msa1378120:CDS
ATGTGTTCATGCATTGGAAA+GGG 0.484557 tig0020047:-146474 Msa1378120:CDS
CTCAGTTGCGAACTACTCAT+TGG 0.484728 tig0020047:-145147 Msa1378120:CDS
CATTGAATATGGTAAACAAA+TGG 0.486074 tig0020047:-149258 Msa1378120:CDS
AGTAACACCAATGTACTAAC+CGG 0.486227 tig0020047:-145887 Msa1378120:CDS
GACAATGAGTTGATCCATGC+TGG 0.487385 tig0020047:+145224 None:intergenic
TTCCTGATGCAAGGGAAAGC+TGG 0.488889 tig0020047:-146546 Msa1378120:CDS
TATTTCATGTGTTCATGCAT+TGG 0.491737 tig0020047:-146480 Msa1378120:CDS
CATCTGCTGGAGTGGTAGAA+TGG 0.497139 tig0020047:+145171 None:intergenic
AGGAGTTCTCTGGAATAAGC+AGG 0.497360 tig0020047:+148703 None:intergenic
TTCGCAACTGAGACATCTGC+TGG 0.499051 tig0020047:+145158 None:intergenic
GCAAAGTCATCATAAGCATC+AGG 0.504518 tig0020047:+145848 None:intergenic
AAATTTGTCAGCTGTGTTGG+AGG 0.507805 tig0020047:-145938 Msa1378120:CDS
TAATGCTCTTGCTTAGAGCT+TGG 0.508452 tig0020047:+149555 None:intergenic
AGAGAGAAGAGAAGAGTACA+GGG 0.511618 tig0020047:+149822 None:intergenic
GCAGGTTGTTCCATCTTTGA+CGG 0.515262 tig0020047:+146412 None:intergenic
GTACTAACCGGTGCTATTGT+TGG 0.516769 tig0020047:-145875 Msa1378120:CDS
CGCAATATTCAGAAGACACC+TGG 0.521492 tig0020047:-146447 Msa1378120:CDS
ACTCCTCCGTCATGCCTATG+AGG 0.521668 tig0020047:-148686 Msa1378120:intron
TTCATCCATTGTGTCAATCA+AGG 0.521822 tig0020047:-145969 Msa1378120:CDS
CATGTGTTCATGCATTGGAA+AGG 0.526676 tig0020047:-146475 Msa1378120:CDS
CAATATTACTTGGATTACCT+TGG 0.529451 tig0020047:-146791 Msa1378120:CDS
ATGGCTAGTAGTGGTGAACT+TGG 0.530079 tig0020047:-149239 Msa1378120:CDS
CGTGCAAGAACACCTATAAG+AGG 0.534994 tig0020047:+145773 None:intergenic
TTGTAAAGCGGATAAGAAAG+AGG 0.536239 tig0020047:+144908 None:intergenic
ACTTACATTGTAGCCACTGA+TGG 0.537291 tig0020047:+146946 None:intergenic
CTCTGTGGTGAACTCTTTGA+GGG 0.538204 tig0020047:+145993 None:intergenic
CCACAAGTGTTGGCAAAGAC+CGG 0.538470 tig0020047:-148845 Msa1378120:CDS
CGGTCGGTGGTCATATCCTC+CGG 0.538882 tig0020047:+148826 None:intergenic
TTCAAGACGGTAAAGCTAGT+GGG 0.539724 tig0020047:-149460 Msa1378120:CDS
CCAGATTGGACCATAAAGCT+TGG 0.539856 tig0020047:+145280 None:intergenic
GGGGAAGAGTGTGAAAAGGA+AGG 0.540413 tig0020047:+149881 None:intergenic
CCCAAGAGCTACAAGTTACA+TGG 0.541633 tig0020047:-146035 Msa1378120:CDS
GAACTTCTTAACATGTTAGG+AGG 0.545801 tig0020047:-144810 Msa1378120:three_prime_UTR
TTAGAGCTTGGCCATAGTCA+TGG 0.546404 tig0020047:+149567 None:intergenic
TTAAGGGGAAGAGTGTGAAA+AGG 0.546705 tig0020047:+149877 None:intergenic
GTGGGCGGTTACTATGATGC+AGG 0.548334 tig0020047:-149341 Msa1378120:CDS
CCATCATTATCCTTTGCTGG+TGG 0.548930 tig0020047:-149590 Msa1378120:CDS
TTGCCAACCAGTTCCACCCA+TGG 0.549327 tig0020047:+146754 None:intergenic
TGTTCAGACTTTAGTTGCCA+AGG 0.550613 tig0020047:-146696 Msa1378120:intron
AGTGTTGAGTGAAACCTCAT+AGG 0.550944 tig0020047:+148672 None:intergenic
ATGGAAGGAGCGGTGCAGAA+AGG 0.551744 tig0020047:-144959 Msa1378120:three_prime_UTR
TGGTAGAAATGGTGACTCCA+TGG 0.555052 tig0020047:-146771 Msa1378120:CDS
ACCCCATTTCACAGCTTCCA+TGG 0.557009 tig0020047:+149211 None:intergenic
AAATTTGCAGGTAGATCTAG+TGG 0.560073 tig0020047:-149360 Msa1378120:intron
TGCCAATACCTGGAAGGAGC+TGG 0.560118 tig0020047:+145723 None:intergenic
TTTGACAAATAGGTAGGAGA+TGG 0.560365 tig0020047:-148877 Msa1378120:intron
GGCTATAAACGTTTCTGATG+AGG 0.560878 tig0020047:+150015 None:intergenic
ATTGTAACAGTAAATGCCAT+TGG 0.561988 tig0020047:+149296 None:intergenic
CCGGTCTTTGCCAACACTTG+TGG 0.562723 tig0020047:+148845 None:intergenic
GATAGATTATATAAGATGGA+AGG 0.563313 tig0020047:-144974 Msa1378120:three_prime_UTR
CTTCAAGACGGTAAAGCTAG+TGG 0.564755 tig0020047:-149461 Msa1378120:CDS
TGGATCAACTCATTGTCAGC+AGG 0.564769 tig0020047:-145218 Msa1378120:CDS
CCACCAGCAAAGGATAATGA+TGG 0.565549 tig0020047:+149590 None:intergenic
ATAGTCATGGCCACCAGCAA+AGG 0.568054 tig0020047:+149580 None:intergenic
AGGATTCTCTCCTTAATTAG+CGG 0.568154 tig0020047:-149761 Msa1378120:five_prime_UTR
AATAGCACCGGTTAGTACAT+TGG 0.568895 tig0020047:+145880 None:intergenic
AACTGAGACATCTGCTGGAG+TGG 0.571057 tig0020047:+145163 None:intergenic
TTTGGAGAATGAATGTTGCT+TGG 0.572511 tig0020047:+145582 None:intergenic
TGTGAAATTTGGGTTACCAA+TGG 0.573120 tig0020047:-149312 Msa1378120:CDS
GCACGACTCAGTGGTGGTCA+TGG 0.574843 tig0020047:-145755 Msa1378120:CDS
ATTCCAACTTGAGATATATG+AGG 0.579300 tig0020047:-144614 Msa1378120:three_prime_UTR
TTACTGTTACAATGATGTCA+TGG 0.585136 tig0020047:-149286 Msa1378120:CDS
CTTTGCAAAGGAGAGAAGCT+GGG 0.586238 tig0020047:+146290 None:intergenic
AGAGCTACAAGTTACATGGT+TGG 0.587116 tig0020047:-146031 Msa1378120:CDS
TACCAAACAGTACCTGGGGA+TGG 0.590057 tig0020047:+145547 None:intergenic
ATTCATATACATTCCCAGCA+TGG 0.591029 tig0020047:-145238 Msa1378120:CDS
ATTAGCCTTGATTGACACAA+TGG 0.591359 tig0020047:+145964 None:intergenic
TGACGGTATATTAGGCCACC+AGG 0.593993 tig0020047:+146429 None:intergenic
CCATAGAGAAGATTAGGTTG+AGG 0.596730 tig0020047:+149164 None:intergenic
ATTGGAAACTGAGGAGCTCG+AGG 0.598487 tig0020047:+149845 None:intergenic
TGGGCGGTTACTATGATGCA+GGG 0.599578 tig0020047:-149340 Msa1378120:CDS
CTAACCGGTGCTATTGTTGG+TGG 0.600226 tig0020047:-145872 Msa1378120:CDS
AGACCTCATATATCTCAAGT+TGG 0.601820 tig0020047:+144611 None:intergenic
ACTGTATATAAGTTGTAAAG+CGG 0.608093 tig0020047:+144896 None:intergenic
GGAAGCAGCAGCCATAGCGG+CGG 0.609285 tig0020047:+148747 None:intergenic
GGTAGAAATGGTGACTCCAT+GGG 0.614116 tig0020047:-146770 Msa1378120:CDS
GCAACTAAAGTCTGAACACC+AGG 0.614248 tig0020047:+146701 None:intergenic
TCGAGGGTCTATATATTAAG+GGG 0.616030 tig0020047:+149862 None:intergenic
ACTCCATGGGTGGAACTGGT+TGG 0.620084 tig0020047:-146757 Msa1378120:CDS
GATGTGTAGTTCCTGATGCA+AGG 0.621140 tig0020047:-146555 Msa1378120:intron
AGTTTCTACCAGAAGAAGCA+AGG 0.621712 tig0020047:+146343 None:intergenic
TCTCATTCTGGTCTTCAAGA+CGG 0.621924 tig0020047:-149473 Msa1378120:CDS
AGGTTGATCCAAGTAATCCT+GGG 0.622501 tig0020047:-148792 Msa1378120:CDS
GGTAAACAAATGGCTAGTAG+TGG 0.623148 tig0020047:-149248 Msa1378120:CDS
TGGTGAACTTGGTCATGCCA+TGG 0.624286 tig0020047:-149228 Msa1378120:CDS
AAGCTTTATGGTCCAATCTG+GGG 0.625998 tig0020047:-145278 Msa1378120:CDS
CTTATAAGCGCGACGGTCGG+TGG 0.626940 tig0020047:+148813 None:intergenic
AATTGCTCTGGGCTGCTGCG+TGG 0.627051 tig0020047:-146835 Msa1378120:CDS
AATGGATGTAGACAAACTCA+AGG 0.627924 tig0020047:+145189 None:intergenic
ACCTAATCTTCTCTATGGAG+AGG 0.629055 tig0020047:-149159 Msa1378120:intron
AGGTCCACCAACAATAGCAC+CGG 0.629259 tig0020047:+145868 None:intergenic
GTTAGAGCGACGGAAGACAA+TGG 0.631357 tig0020047:+148726 None:intergenic
GGTGTTCTTGCACGACTCAG+TGG 0.631972 tig0020047:-145764 Msa1378120:CDS
TGATCCAAGTAATCCTGGGT+CGG 0.632242 tig0020047:-148788 Msa1378120:CDS
AATAAGCAGGGTTAGAGCGA+CGG 0.634122 tig0020047:+148716 None:intergenic
TCTCCGGCAAGATCCGACCC+AGG 0.640319 tig0020047:+148775 None:intergenic
AACCTTATAAGCGCGACGGT+CGG 0.640574 tig0020047:+148810 None:intergenic
AATTACCTGAGACTTTGCAA+AGG 0.641567 tig0020047:+146278 None:intergenic
TAATGTTGCCAATACCTGGA+AGG 0.644706 tig0020047:+145717 None:intergenic
ATTATATAAGATGGAAGGAG+CGG 0.644818 tig0020047:-144969 Msa1378120:three_prime_UTR
ATAAACGTTTCTGATGAGGA+AGG 0.645501 tig0020047:+150019 None:intergenic
GGAGTTCTCTGGAATAAGCA+GGG 0.647150 tig0020047:+148704 None:intergenic
ACAATGAGTTGATCCATGCT+GGG 0.648215 tig0020047:+145225 None:intergenic
CCAAAGACAAGTCCATCCCC+AGG 0.649352 tig0020047:-145559 Msa1378120:intron
GTGAAACCTCATAGGCATGA+CGG 0.653358 tig0020047:+148680 None:intergenic
ATGTGTAGTTCCTGATGCAA+GGG 0.653769 tig0020047:-146554 Msa1378120:intron
GTAACACTGACCACAAGTGT+TGG 0.655008 tig0020047:-148855 Msa1378120:CDS
GTTCTTGCACGACTCAGTGG+TGG 0.656295 tig0020047:-145761 Msa1378120:CDS
AATGGAAGCAGCAGCCATAG+CGG 0.656899 tig0020047:+148744 None:intergenic
CGACTCAGTGGTGGTCATGG+TGG 0.661272 tig0020047:-145752 Msa1378120:CDS
TTGGAAACTGAGGAGCTCGA+GGG 0.663033 tig0020047:+149846 None:intergenic
TGGAGTCACCATTTCTACCA+AGG 0.666055 tig0020047:+146774 None:intergenic
GCCATGGAAGCTGTGAAATG+GGG 0.666792 tig0020047:-149212 Msa1378120:CDS
TCAAGACGGTAAAGCTAGTG+GGG 0.667093 tig0020047:-149459 Msa1378120:intron
CAAGTGTTGGCAAAGACCGG+AGG 0.684774 tig0020047:-148842 Msa1378120:CDS
GATCAACCTTATAAGCGCGA+CGG 0.690106 tig0020047:+148806 None:intergenic
AGTACAGGGATTGGAAACTG+AGG 0.690126 tig0020047:+149836 None:intergenic
AATTTGCAGGTAGATCTAGT+GGG 0.693597 tig0020047:-149359 Msa1378120:intron
AGAAATGGTGACTCCATGGG+TGG 0.695548 tig0020047:-146767 Msa1378120:CDS
GGGCGGTTACTATGATGCAG+GGG 0.696091 tig0020047:-149339 Msa1378120:CDS
AAGGTAGTCAGAATAGACAG+TGG 0.699089 tig0020047:+146362 None:intergenic
AATTAAGGAGAGAATCCTTG+CGG 0.704680 tig0020047:+149766 None:intergenic
AAGTACTACAGATCCATCAG+TGG 0.711623 tig0020047:-146959 Msa1378120:CDS
TTGCAGGTAGATCTAGTGGG+CGG 0.713116 tig0020047:-149356 Msa1378120:intron
AATATTCAGAAGACACCTGG+TGG 0.722107 tig0020047:-146444 Msa1378120:CDS
AAACCTCATAGGCATGACGG+AGG 0.739487 tig0020047:+148683 None:intergenic
CCTCAAAGAGTTCACCACAG+AGG 0.741024 tig0020047:-145992 Msa1378120:CDS
ACACAATGGATGAACCTCTG+TGG 0.780143 tig0020047:+145978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTATTTTGTTTTTTATTT+TGG + tig0020047:144596-144615 None:intergenic 10.0%
!! ATATTATAATATAGTATTCA+TGG - tig0020047:145533-145552 Msa1378120:intron 10.0%
!! TATTATAATATAGTATTCAT+GGG - tig0020047:145534-145553 Msa1378120:intron 10.0%
!!! TTTAATTATTTATCTGTTTT+TGG - tig0020047:145952-145971 Msa1378120:CDS 10.0%
!!! AAAAAACTTATCTTTATTTT+TGG - tig0020047:146306-146325 Msa1378120:CDS 10.0%
!! TAAAAATAAACTAAAATCTT+TGG + tig0020047:146354-146373 None:intergenic 10.0%
!! AAAAAACTAGAAAACAAAAA+AGG + tig0020047:145482-145501 None:intergenic 15.0%
!! TGATAAAAATAAAAAAGTTG+TGG - tig0020047:146705-146724 Msa1378120:CDS 15.0%
!!! ATAAAATTTACAATTTGCTT+TGG + tig0020047:146732-146751 None:intergenic 15.0%
!! TGCATTTAATTATTCATTTA+TGG - tig0020047:147226-147245 Msa1378120:intron 15.0%
!!! CAATAATTGAATTTTTGTAT+TGG + tig0020047:147675-147694 None:intergenic 15.0%
!!! AATAATTTTAATGATTGGAA+TGG + tig0020047:148355-148374 None:intergenic 15.0%
!!! CCTTAAATAATTTTAATGAT+TGG + tig0020047:148360-148379 None:intergenic 15.0%
!! CCAATCATTAAAATTATTTA+AGG - tig0020047:148357-148376 Msa1378120:intron 15.0%
!! AATAGATAGATTATATAAGA+TGG - tig0020047:149597-149616 Msa1378120:CDS 15.0%
!!! TTTTATTTTGGATTTTGAAG+TGG + tig0020047:144584-144603 None:intergenic 20.0%
!! ATGAATGAATGAATTTGAAA+AGG + tig0020047:145155-145174 None:intergenic 20.0%
!!! TTTTTTACAGTTACTCATTT+TGG - tig0020047:145186-145205 Msa1378120:CDS 20.0%
!!! AAGAATGATGTTATTGTTTT+TGG - tig0020047:145672-145691 Msa1378120:intron 20.0%
!! AACTTGAAACTAATACTAAT+AGG - tig0020047:146128-146147 Msa1378120:intron 20.0%
!!! TGTACAAAACGTATTTTTAT+GGG + tig0020047:146518-146537 None:intergenic 20.0%
!!! TTTTTATCATTATTATGGGT+TGG + tig0020047:146694-146713 None:intergenic 20.0%
!! CTATACTATCACATTAATAT+TGG - tig0020047:147103-147122 Msa1378120:intron 20.0%
!! ATTAATTAAATCAACCTACA+AGG + tig0020047:147393-147412 None:intergenic 20.0%
!! TTAATATTAAGCTCTTCTAA+TGG + tig0020047:147423-147442 None:intergenic 20.0%
!! AAATTCAATTATTGCTTGAA+TGG - tig0020047:147681-147700 Msa1378120:intron 20.0%
!!! TGTATTTTTTTCTAAAGCTT+TGG - tig0020047:149798-149817 Msa1378120:five_prime_UTR 20.0%
!!! ATAGTATTATGTTTTTATGC+TGG - tig0020047:149885-149904 Msa1378120:five_prime_UTR 20.0%
!!! AAAATTTGTTGAATGCAGTT+AGG + tig0020047:144909-144928 None:intergenic 25.0%
!! TGCATTCAACAAATTTTTCA+TGG - tig0020047:144912-144931 Msa1378120:three_prime_UTR 25.0%
! CATTGAATATGGTAAACAAA+TGG - tig0020047:145317-145336 Msa1378120:CDS 25.0%
! CAAATTCAACTTTAACTCTT+TGG + tig0020047:145583-145602 None:intergenic 25.0%
! CAAAGAGTTAAAGTTGAATT+TGG - tig0020047:145581-145600 Msa1378120:CDS 25.0%
!!! TTTTTGGCATTTTGACAAAT+AGG - tig0020047:145688-145707 Msa1378120:intron 25.0%
! GATAAATAAAAGATGAAGCA+TGG - tig0020047:146048-146067 Msa1378120:CDS 25.0%
!!! TTTTTCAGTGAGCAAATATT+AGG + tig0020047:146465-146484 None:intergenic 25.0%
!! AGGATGGAGATAATATTTTT+AGG - tig0020047:146490-146509 Msa1378120:CDS 25.0%
!!! GGATGGAGATAATATTTTTA+GGG - tig0020047:146491-146510 Msa1378120:CDS 25.0%
!!! GTGTACAAAACGTATTTTTA+TGG + tig0020047:146519-146538 None:intergenic 25.0%
! AAGATGACAAAAGAAAAAGT+GGG + tig0020047:146558-146577 None:intergenic 25.0%
! GAAGTAATATAAAGGAGAAA+TGG + tig0020047:146672-146691 None:intergenic 25.0%
! AAAAGAGAAAAAAGAAAGAC+CGG - tig0020047:146765-146784 Msa1378120:CDS 25.0%
! AAGGAAAAGGAAAAAGAAAA+TGG + tig0020047:146969-146988 None:intergenic 25.0%
!! TTCTTTTTCCTTTTCCTTTT+TGG - tig0020047:146971-146990 Msa1378120:CDS 25.0%
!! TCTTTTTCCTTTTCCTTTTT+GGG - tig0020047:146972-146991 Msa1378120:CDS 25.0%
!! AATCGAATTTACTCAGTTTT+CGG - tig0020047:147334-147353 Msa1378120:intron 25.0%
! ATAAATGAGTATTACCTTGT+AGG - tig0020047:147376-147395 Msa1378120:intron 25.0%
! GAATGGTAATAATTGAATGT+CGG - tig0020047:147698-147717 Msa1378120:intron 25.0%
! ATCTAACAACCAATATTACT+TGG - tig0020047:147774-147793 Msa1378120:intron 25.0%
! AGAAAAAAAAGATGTTACCT+TGG + tig0020047:147899-147918 None:intergenic 25.0%
! CATGTATTATCGAATATATG+TGG - tig0020047:147973-147992 Msa1378120:intron 25.0%
! TGTTTGAAAAATATCTGCAA+AGG - tig0020047:148066-148085 Msa1378120:intron 25.0%
! CAAAGTTGAATTAAATGAGA+TGG + tig0020047:148327-148346 None:intergenic 25.0%
! ACTTCATATTAAATGTGAGT+CGG + tig0020047:148438-148457 None:intergenic 25.0%
! TCACATTTAATATGAAGTGT+TGG - tig0020047:148440-148459 Msa1378120:intron 25.0%
!! TGCGTTTAAAATTAATCTTC+AGG - tig0020047:148495-148514 Msa1378120:intron 25.0%
!! GTTTAAAATTAATCTTCAGG+TGG - tig0020047:148498-148517 Msa1378120:intron 25.0%
! TTCATAGTTCTTTCTTTCAT+CGG + tig0020047:148752-148771 None:intergenic 25.0%
! AAAGATTTATTTATAGCAGG+AGG + tig0020047:148900-148919 None:intergenic 25.0%
! CCAAAAGATTTATTTATAGC+AGG + tig0020047:148903-148922 None:intergenic 25.0%
!! CCTGCTATAAATAAATCTTT+TGG - tig0020047:148900-148919 Msa1378120:intron 25.0%
! AAAATACACAAGAGAAGAAA+AGG + tig0020047:149550-149569 None:intergenic 25.0%
! GATAGATTATATAAGATGGA+AGG - tig0020047:149601-149620 Msa1378120:CDS 25.0%
! ACTGTATATAAGTTGTAAAG+CGG + tig0020047:149682-149701 None:intergenic 25.0%
! AATGAACTTCTTAACATGTT+AGG - tig0020047:149762-149781 Msa1378120:five_prime_UTR 25.0%
! TAGCACAAACTGTTTATATA+TGG + tig0020047:149866-149885 None:intergenic 25.0%
GGAAGTAAAAGAAAAAACAG+AGG + tig0020047:144967-144986 None:intergenic 30.0%
!! TTTTGGTTGTTGAAATTTGC+AGG - tig0020047:145203-145222 Msa1378120:CDS 30.0%
ATTGTAACAGTAAATGCCAT+TGG + tig0020047:145282-145301 None:intergenic 30.0%
TTACTGTTACAATGATGTCA+TGG - tig0020047:145289-145308 Msa1378120:CDS 30.0%
! TCATGGAGTATCATTGAATA+TGG - tig0020047:145306-145325 Msa1378120:CDS 30.0%
!!! TGTTTTTGGTTAACAAGTAG+TGG - tig0020047:145966-145985 Msa1378120:CDS 30.0%
TGAAACTAATACTAATAGGC+AGG - tig0020047:146132-146151 Msa1378120:intron 30.0%
TTTGGAAGTAGATGAGATAT+TGG - tig0020047:146324-146343 Msa1378120:CDS 30.0%
TATTTGCTCACTGAAAAAGT+AGG - tig0020047:146467-146486 Msa1378120:CDS 30.0%
! AAATACGTTTTGTACACTTG+TGG - tig0020047:146522-146541 Msa1378120:CDS 30.0%
GAAGATGACAAAAGAAAAAG+TGG + tig0020047:146559-146578 None:intergenic 30.0%
CAACTAAACAAGTGTAAAAG+AGG - tig0020047:146630-146649 Msa1378120:intron 30.0%
AAAGGAGAAATGGTTAAATG+AGG + tig0020047:146662-146681 None:intergenic 30.0%
!! ATGGGTTGGAAGTAATATAA+AGG + tig0020047:146680-146699 None:intergenic 30.0%
AAAGAGAAAAAAGAAAGACC+GGG - tig0020047:146766-146785 Msa1378120:CDS 30.0%
CACACAGATATCAATATGTA+CGG + tig0020047:146843-146862 None:intergenic 30.0%
TTACACTTATCCCATTTGTT+TGG - tig0020047:147001-147020 Msa1378120:CDS 30.0%
TACACTTATCCCATTTGTTT+GGG - tig0020047:147002-147021 Msa1378120:CDS 30.0%
ATTATTTACACTACCACAAC+TGG - tig0020047:147036-147055 Msa1378120:intron 30.0%
TTATTTACACTACCACAACT+GGG - tig0020047:147037-147056 Msa1378120:intron 30.0%
AGTGTAAAAGGTTGTAATAG+AGG + tig0020047:147152-147171 None:intergenic 30.0%
!! TTTCTGTCATTGTTTCTGAT+AGG - tig0020047:147190-147209 Msa1378120:intron 30.0%
! ATCGAATTTACTCAGTTTTC+GGG - tig0020047:147335-147354 Msa1378120:intron 30.0%
!! ATTGCAGTTGTTTGATTTTG+CGG - tig0020047:147549-147568 Msa1378120:intron 30.0%
!! AAGTGTTTCTAGTTCAATTG+TGG - tig0020047:147648-147667 Msa1378120:intron 30.0%
CAAGGTAATCCAAGTAATAT+TGG + tig0020047:147786-147805 None:intergenic 30.0%
CAATATTACTTGGATTACCT+TGG - tig0020047:147784-147803 Msa1378120:intron 30.0%
GCAAATGACTGAATTTAGTT+GGG - tig0020047:147840-147859 Msa1378120:intron 30.0%
AATGCATTGTTCAAACACAT+TGG - tig0020047:147939-147958 Msa1378120:intron 30.0%
!! TGCAGATATTTTTCAAACAC+AGG + tig0020047:148065-148084 None:intergenic 30.0%
TATTTCATGTGTTCATGCAT+TGG - tig0020047:148095-148114 Msa1378120:intron 30.0%
CTTCATATTAAATGTGAGTC+GGG + tig0020047:148437-148456 None:intergenic 30.0%
GGTGATAGTAAAAGTAATTG+CGG - tig0020047:148921-148940 Msa1378120:intron 30.0%
GTTTGGTATATAGTAGCATA+TGG - tig0020047:149043-149062 Msa1378120:intron 30.0%
!! TTGATCTCAACATGTCATTT+TGG + tig0020047:149108-149127 None:intergenic 30.0%
TTGAGATCAAAATCTAAGTG+AGG - tig0020047:149118-149137 Msa1378120:intron 30.0%
! TTTTCTGCTGAATGGAAATT+GGG + tig0020047:149173-149192 None:intergenic 30.0%
! ATTTTCTGCTGAATGGAAAT+TGG + tig0020047:149174-149193 None:intergenic 30.0%
CTTTCAATATCCAAGCTTTA+TGG - tig0020047:149285-149304 Msa1378120:CDS 30.0%
!! AGCGATTTGGTTTAAAAAGT+CGG - tig0020047:149461-149480 Msa1378120:CDS 30.0%
ATTATATAAGATGGAAGGAG+CGG - tig0020047:149606-149625 Msa1378120:CDS 30.0%
ATTCCAACTTGAGATATATG+AGG - tig0020047:149961-149980 Msa1378120:five_prime_UTR 30.0%
TTGAGATATATGAGGTCTAA+TGG - tig0020047:149969-149988 Msa1378120:five_prime_UTR 30.0%
ATAAACGTTTCTGATGAGGA+AGG + tig0020047:144559-144578 None:intergenic 35.0%
TCGAGGGTCTATATATTAAG+GGG + tig0020047:144716-144735 None:intergenic 35.0%
CTCGAGGGTCTATATATTAA+GGG + tig0020047:144717-144736 None:intergenic 35.0%
AATTAAGGAGAGAATCCTTG+CGG + tig0020047:144812-144831 None:intergenic 35.0%
AGGATTCTCTCCTTAATTAG+CGG - tig0020047:144814-144833 Msa1378120:three_prime_UTR 35.0%
TCGTATAATCCCGCTAATTA+AGG + tig0020047:144827-144846 None:intergenic 35.0%
CATGAAACTCTTTGGTTATG+AGG + tig0020047:145078-145097 None:intergenic 35.0%
CTCATAACCAAAGAGTTTCA+TGG - tig0020047:145076-145095 Msa1378120:three_prime_UTR 35.0%
AAATTTGCAGGTAGATCTAG+TGG - tig0020047:145215-145234 Msa1378120:CDS 35.0%
AATTTGCAGGTAGATCTAGT+GGG - tig0020047:145216-145235 Msa1378120:CDS 35.0%
CAGGGGATAATGTGAAATTT+GGG - tig0020047:145253-145272 Msa1378120:CDS 35.0%
! TGTGAAATTTGGGTTACCAA+TGG - tig0020047:145263-145282 Msa1378120:CDS 35.0%
!! TGGCATTTTGACAAATAGGT+AGG - tig0020047:145692-145711 Msa1378120:intron 35.0%
TTTGACAAATAGGTAGGAGA+TGG - tig0020047:145698-145717 Msa1378120:intron 35.0%
TAACAAGTAGTGGTAGTAGT+AGG - tig0020047:145976-145995 Msa1378120:CDS 35.0%
AGCGACAAATATTGGTGAAA+CGG - tig0020047:146102-146121 Msa1378120:intron 35.0%
GAACTCTTGCTCAATAAAGT+TGG + tig0020047:146585-146604 None:intergenic 35.0%
AGCAAGAGTTCACTCAATTT+AGG - tig0020047:146594-146613 Msa1378120:intron 35.0%
CGTACATATTGATATCTGTG+TGG - tig0020047:146841-146860 Msa1378120:CDS 35.0%
TGTGATGTGAATCTCTTCAA+GGG + tig0020047:146885-146904 None:intergenic 35.0%
ATTTCGACCCAAAAAGGAAA+AGG + tig0020047:146982-147001 None:intergenic 35.0%
AGTGTAATTTCGACCCAAAA+AGG + tig0020047:146988-147007 None:intergenic 35.0%
ATGAGTGATCCCAAACAAAT+GGG + tig0020047:147014-147033 None:intergenic 35.0%
AATGAGTGATCCCAAACAAA+TGG + tig0020047:147015-147034 None:intergenic 35.0%
!! AATATCCATGTTGATGGTTG+CGG + tig0020047:147076-147095 None:intergenic 35.0%
TCAAGCAATATCCATGTTGA+TGG + tig0020047:147082-147101 None:intergenic 35.0%
TCAGAAACAATGACAGAAAC+AGG + tig0020047:147189-147208 None:intergenic 35.0%
TATGGCTATAGTTAGAGACT+TGG - tig0020047:147244-147263 Msa1378120:intron 35.0%
! CAGAGACAAATCAGTTTTAC+TGG + tig0020047:147516-147535 None:intergenic 35.0%
!! CAGTAAAACTGATTTGTCTC+TGG - tig0020047:147514-147533 Msa1378120:intron 35.0%
! GATTTTGCGGATAAATACAG+AGG - tig0020047:147562-147581 Msa1378120:intron 35.0%
TTGGATTACCTTGGTAGAAA+TGG - tig0020047:147793-147812 Msa1378120:intron 35.0%
GGCAAATGACTGAATTTAGT+TGG - tig0020047:147839-147858 Msa1378120:intron 35.0%
ATGTGTTCATGCATTGGAAA+GGG - tig0020047:148101-148120 Msa1378120:intron 35.0%
TCCATCTTTGACGGTATATT+AGG + tig0020047:148157-148176 None:intergenic 35.0%
AGAATAGACAGTGGCTAAAA+AGG + tig0020047:148207-148226 None:intergenic 35.0%
AATTACCTGAGACTTTGCAA+AGG + tig0020047:148300-148319 None:intergenic 35.0%
!! TGTTGGTGCTACATATTTCA+AGG - tig0020047:148457-148476 Msa1378120:intron 35.0%
!! GTTGGTGCTACATATTTCAA+GGG - tig0020047:148458-148477 Msa1378120:intron 35.0%
ACAAGTTACATGGTTGGATA+TGG - tig0020047:148550-148569 Msa1378120:intron 35.0%
TTCATCCATTGTGTCAATCA+AGG - tig0020047:148606-148625 Msa1378120:intron 35.0%
!! ATTAGCCTTGATTGACACAA+TGG + tig0020047:148614-148633 None:intergenic 35.0%
AGTAACACCAATGTACTAAC+CGG - tig0020047:148688-148707 Msa1378120:CDS 35.0%
!! TATAAGAGGAGCATTGTTGT+AGG + tig0020047:148791-148810 None:intergenic 35.0%
TACAACAATGCTCCTCTTAT+AGG - tig0020047:148790-148809 Msa1378120:CDS 35.0%
TTTGGAGAATGAATGTTGCT+TGG + tig0020047:148996-149015 None:intergenic 35.0%
TATATACCAAACAGTACCTG+GGG + tig0020047:149035-149054 None:intergenic 35.0%
CTATATACCAAACAGTACCT+GGG + tig0020047:149036-149055 None:intergenic 35.0%
ACTATATACCAAACAGTACC+TGG + tig0020047:149037-149056 None:intergenic 35.0%
!!! ACTTCTCTTTTTCAGCTTCA+TGG - tig0020047:149142-149161 Msa1378120:intron 35.0%
ATTGAGAGACTTGAGATTCT+TGG + tig0020047:149265-149284 None:intergenic 35.0%
ATTCATATACATTCCCAGCA+TGG - tig0020047:149337-149356 Msa1378120:CDS 35.0%
AATGGATGTAGACAAACTCA+AGG + tig0020047:149389-149408 None:intergenic 35.0%
TTGTAAAGCGGATAAGAAAG+AGG + tig0020047:149670-149689 None:intergenic 35.0%
GAACTTCTTAACATGTTAGG+AGG - tig0020047:149765-149784 Msa1378120:five_prime_UTR 35.0%
AGACCTCATATATCTCAAGT+TGG + tig0020047:149967-149986 None:intergenic 35.0%
GGCTATAAACGTTTCTGATG+AGG + tig0020047:144563-144582 None:intergenic 40.0%
! TTAAGGGGAAGAGTGTGAAA+AGG + tig0020047:144701-144720 None:intergenic 40.0%
GCTCGAGGGTCTATATATTA+AGG + tig0020047:144718-144737 None:intergenic 40.0%
! AGAGAGAAGAGAAGAGTACA+GGG + tig0020047:144756-144775 None:intergenic 40.0%
! GAAACTTCTCTTTTTCCGCA+AGG - tig0020047:144794-144813 Msa1378120:three_prime_UTR 40.0%
GGATTCTCTCCTTAATTAGC+GGG - tig0020047:144815-144834 Msa1378120:three_prime_UTR 40.0%
CTTCCATCATTATCCTTTGC+TGG - tig0020047:144982-145001 Msa1378120:three_prime_UTR 40.0%
TAATGCTCTTGCTTAGAGCT+TGG + tig0020047:145023-145042 None:intergenic 40.0%
!! TTCTTTGAAGCTCAGAGATC+TGG - tig0020047:145045-145064 Msa1378120:three_prime_UTR 40.0%
GAGATCTCCATGAAACTCTT+TGG + tig0020047:145086-145105 None:intergenic 40.0%
GTTTCATGGAGATCTCATTC+TGG - tig0020047:145090-145109 Msa1378120:three_prime_UTR 40.0%
! TCTCATTCTGGTCTTCAAGA+CGG - tig0020047:145102-145121 Msa1378120:three_prime_UTR 40.0%
TTCAAGACGGTAAAGCTAGT+GGG - tig0020047:145115-145134 Msa1378120:three_prime_UTR 40.0%
GCAGGGGATAATGTGAAATT+TGG - tig0020047:145252-145271 Msa1378120:CDS 40.0%
GGTAAACAAATGGCTAGTAG+TGG - tig0020047:145327-145346 Msa1378120:CDS 40.0%
! CCATAGAGAAGATTAGGTTG+AGG + tig0020047:145414-145433 None:intergenic 40.0%
CCTCAACCTAATCTTCTCTA+TGG - tig0020047:145411-145430 Msa1378120:CDS 40.0%
ACCTAATCTTCTCTATGGAG+AGG - tig0020047:145416-145435 Msa1378120:CDS 40.0%
ACCTCTCCATAGAGAAGATT+AGG + tig0020047:145420-145439 None:intergenic 40.0%
! AAGGTTGATCCAAGTAATCC+TGG - tig0020047:145782-145801 Msa1378120:CDS 40.0%
! AGGTTGATCCAAGTAATCCT+GGG - tig0020047:145783-145802 Msa1378120:CDS 40.0%
! AGTGTTGAGTGAAACCTCAT+AGG + tig0020047:145906-145925 None:intergenic 40.0%
! GTAGTGGTAGTAGTAGGTTT+TGG - tig0020047:145982-146001 Msa1378120:CDS 40.0%
CTGATCACAGCGACAAATAT+TGG - tig0020047:146094-146113 Msa1378120:intron 40.0%
ACTCGGTAGAACTGCATTTA+TGG - tig0020047:146235-146254 Msa1378120:intron 40.0%
TTGCTCACTGAAAAAGTAGG+AGG - tig0020047:146470-146489 Msa1378120:CDS 40.0%
TCACTGAAAAAGTAGGAGGA+TGG - tig0020047:146474-146493 Msa1378120:CDS 40.0%
!! AACAAAAGTGTCCCTTCACT+AGG + tig0020047:146800-146819 None:intergenic 40.0%
! AAGGGACACTTTTGTTGCAA+TGG - tig0020047:146804-146823 Msa1378120:CDS 40.0%
GTGATGTGAATCTCTTCAAG+GGG + tig0020047:146884-146903 None:intergenic 40.0%
GTGTGATGTGAATCTCTTCA+AGG + tig0020047:146886-146905 None:intergenic 40.0%
! TACCATTTTGTCATGACACG+TGG - tig0020047:146926-146945 Msa1378120:intron 40.0%
ATCCACGTGTCATGACAAAA+TGG + tig0020047:146931-146950 None:intergenic 40.0%
! CAGCATTGAGCTAGTGTAAA+AGG + tig0020047:147164-147183 None:intergenic 40.0%
TTCTGTTTCCAGTTTCCACA+TGG - tig0020047:147488-147507 Msa1378120:intron 40.0%
!!! TCAGTTTTACTGGTTCCATG+TGG + tig0020047:147506-147525 None:intergenic 40.0%
AAGTACTACAGATCCATCAG+TGG - tig0020047:147616-147635 Msa1378120:intron 40.0%
ACTTACATTGTAGCCACTGA+TGG + tig0020047:147632-147651 None:intergenic 40.0%
AGTTGGGATGTTAAGTATCC+TGG - tig0020047:147856-147875 Msa1378120:intron 40.0%
TGTTCAGACTTTAGTTGCCA+AGG - tig0020047:147879-147898 Msa1378120:intron 40.0%
! TGTTCAAACACATTGGCTAG+TGG - tig0020047:147946-147965 Msa1378120:intron 40.0%
ATGTGTAGTTCCTGATGCAA+GGG - tig0020047:148021-148040 Msa1378120:intron 40.0%
CATGTGTTCATGCATTGGAA+AGG - tig0020047:148100-148119 Msa1378120:intron 40.0%
AATATTCAGAAGACACCTGG+TGG - tig0020047:148131-148150 Msa1378120:intron 40.0%
GCCTAATATACCGTCAAAGA+TGG - tig0020047:148153-148172 Msa1378120:intron 40.0%
ATAGACAGTGGCTAAAAAGG+AGG + tig0020047:148204-148223 None:intergenic 40.0%
AAGGTAGTCAGAATAGACAG+TGG + tig0020047:148216-148235 None:intergenic 40.0%
AGTTTCTACCAGAAGAAGCA+AGG + tig0020047:148235-148254 None:intergenic 40.0%
AGAAACTTGAGATGTGCTTC+TGG - tig0020047:148248-148267 Msa1378120:intron 40.0%
! CCATGTAACTTGTAGCTCTT+GGG + tig0020047:148543-148562 None:intergenic 40.0%
! ACCATGTAACTTGTAGCTCT+TGG + tig0020047:148544-148563 None:intergenic 40.0%
AGAGCTACAAGTTACATGGT+TGG - tig0020047:148544-148563 Msa1378120:intron 40.0%
! CCAACACAGCTGACAAATTT+TGG + tig0020047:148637-148656 None:intergenic 40.0%
CCAAAATTTGTCAGCTGTGT+TGG - tig0020047:148634-148653 Msa1378120:intron 40.0%
AAATTTGTCAGCTGTGTTGG+AGG - tig0020047:148637-148656 Msa1378120:intron 40.0%
!! AATAGCACCGGTTAGTACAT+TGG + tig0020047:148698-148717 None:intergenic 40.0%
GCAAAGTCATCATAAGCATC+AGG + tig0020047:148730-148749 None:intergenic 40.0%
TAATGTTGCCAATACCTGGA+AGG + tig0020047:148861-148880 None:intergenic 40.0%
ACGATAATGTTGCCAATACC+TGG + tig0020047:148865-148884 None:intergenic 40.0%
! GAATGTTGCTTGGTAACAAC+AGG + tig0020047:148986-149005 None:intergenic 40.0%
!!! TCTTTTTCAGCTTCATGGTC+AGG - tig0020047:149147-149166 Msa1378120:intron 40.0%
! CAAGCTTTATGGTCCAATCT+GGG - tig0020047:149296-149315 Msa1378120:CDS 40.0%
! AAGCTTTATGGTCCAATCTG+GGG - tig0020047:149297-149316 Msa1378120:CDS 40.0%
!! ACAATGAGTTGATCCATGCT+GGG + tig0020047:149353-149372 None:intergenic 40.0%
AAACCAAATCGCTTGTTCTC+AGG + tig0020047:149454-149473 None:intergenic 40.0%
TTTAAAAAGTCGGATGCGAG+TGG - tig0020047:149471-149490 Msa1378120:CDS 40.0%
TTATGCTGGCAATGCTTGTT+TGG - tig0020047:149899-149918 Msa1378120:five_prime_UTR 40.0%
AGTACAGGGATTGGAAACTG+AGG + tig0020047:144742-144761 None:intergenic 45.0%
! GAAGAGAAGAGTACAGGGAT+TGG + tig0020047:144751-144770 None:intergenic 45.0%
! GAGAGAGAAGAGAAGAGTAC+AGG + tig0020047:144757-144776 None:intergenic 45.0%
CCACCAGCAAAGGATAATGA+TGG + tig0020047:144988-145007 None:intergenic 45.0%
CCATCATTATCCTTTGCTGG+TGG - tig0020047:144985-145004 Msa1378120:three_prime_UTR 45.0%
TTAGAGCTTGGCCATAGTCA+TGG + tig0020047:145011-145030 None:intergenic 45.0%
CTTCAAGACGGTAAAGCTAG+TGG - tig0020047:145114-145133 Msa1378120:three_prime_UTR 45.0%
TCAAGACGGTAAAGCTAGTG+GGG - tig0020047:145116-145135 Msa1378120:three_prime_UTR 45.0%
ATGGCTAGTAGTGGTGAACT+TGG - tig0020047:145336-145355 Msa1378120:CDS 45.0%
ATGCCATGGAAGCTGTGAAA+TGG - tig0020047:145361-145380 Msa1378120:CDS 45.0%
TGCCATGGAAGCTGTGAAAT+GGG - tig0020047:145362-145381 Msa1378120:CDS 45.0%
GTAACACTGACCACAAGTGT+TGG - tig0020047:145720-145739 Msa1378120:intron 45.0%
GATCAACCTTATAAGCGCGA+CGG + tig0020047:145772-145791 None:intergenic 45.0%
TGATCCAAGTAATCCTGGGT+CGG - tig0020047:145787-145806 Msa1378120:CDS 45.0%
AATAAGCAGGGTTAGAGCGA+CGG + tig0020047:145862-145881 None:intergenic 45.0%
!! GGAGTTCTCTGGAATAAGCA+GGG + tig0020047:145874-145893 None:intergenic 45.0%
!! AGGAGTTCTCTGGAATAAGC+AGG + tig0020047:145875-145894 None:intergenic 45.0%
GTGAAACCTCATAGGCATGA+CGG + tig0020047:145898-145917 None:intergenic 45.0%
ACTAATAGGCAGGCAGTTAC+TGG - tig0020047:146142-146161 Msa1378120:intron 45.0%
CTTCACTAGGCATGAAAACC+CGG + tig0020047:146787-146806 None:intergenic 45.0%
! GGGTTTTCATGCCTAGTGAA+GGG - tig0020047:146786-146805 Msa1378120:CDS 45.0%
ATCTCTTCAAGGGGAAGGTT+GGG + tig0020047:146875-146894 None:intergenic 45.0%
AATCTCTTCAAGGGGAAGGT+TGG + tig0020047:146876-146895 None:intergenic 45.0%
TGTGAATCTCTTCAAGGGGA+AGG + tig0020047:146880-146899 None:intergenic 45.0%
ATGACACGTGGATACACTGT+CGG - tig0020047:146938-146957 Msa1378120:intron 45.0%
TTTACACTACCACAACTGGG+TGG - tig0020047:147040-147059 Msa1378120:intron 45.0%
AGTAAGTAACCACCCAGTTG+TGG + tig0020047:147052-147071 None:intergenic 45.0%
TACTTCCGCAACCATCAACA+TGG - tig0020047:147068-147087 Msa1378120:intron 45.0%
GCACATGACAGCGGAAAAAT+AGG + tig0020047:147130-147149 None:intergenic 45.0%
! GTAATAGAGGCACATGACAG+CGG + tig0020047:147139-147158 None:intergenic 45.0%
!! TACTGGTTCCATGTGGAAAC+TGG + tig0020047:147499-147518 None:intergenic 45.0%
TGGAGTCACCATTTCTACCA+AGG + tig0020047:147804-147823 None:intergenic 45.0%
TGGTAGAAATGGTGACTCCA+TGG - tig0020047:147804-147823 Msa1378120:intron 45.0%
GGTAGAAATGGTGACTCCAT+GGG - tig0020047:147805-147824 Msa1378120:intron 45.0%
GCAACTAAAGTCTGAACACC+AGG + tig0020047:147877-147896 None:intergenic 45.0%
GATGTGTAGTTCCTGATGCA+AGG - tig0020047:148020-148039 Msa1378120:intron 45.0%
CGCAATATTCAGAAGACACC+TGG - tig0020047:148128-148147 Msa1378120:intron 45.0%
GCAGGTTGTTCCATCTTTGA+CGG + tig0020047:148166-148185 None:intergenic 45.0%
AGGAACTTGTGGCAAATTGC+AGG + tig0020047:148184-148203 None:intergenic 45.0%
GGCTAAAAAGGAGGAACTTG+TGG + tig0020047:148195-148214 None:intergenic 45.0%
TCTGACTACCTTGCTTCTTC+TGG - tig0020047:148224-148243 Msa1378120:intron 45.0%
CTTTGCAAAGGAGAGAAGCT+GGG + tig0020047:148288-148307 None:intergenic 45.0%
ACTTTGCAAAGGAGAGAAGC+TGG + tig0020047:148289-148308 None:intergenic 45.0%
TCTCTCCTTTGCAAAGTCTC+AGG - tig0020047:148292-148311 Msa1378120:intron 45.0%
!! CTTCAGGTGGACTACATTCT+TGG - tig0020047:148511-148530 Msa1378120:intron 45.0%
CCCAAGAGCTACAAGTTACA+TGG - tig0020047:148540-148559 Msa1378120:intron 45.0%
CTCTGTGGTGAACTCTTTGA+GGG + tig0020047:148585-148604 None:intergenic 45.0%
ACACAATGGATGAACCTCTG+TGG + tig0020047:148600-148619 None:intergenic 45.0%
GTGTTGGAGGTTATGCTACT+TGG - tig0020047:148650-148669 Msa1378120:intron 45.0%
!! GTACTAACCGGTGCTATTGT+TGG - tig0020047:148700-148719 Msa1378120:CDS 45.0%
CGTGCAAGAACACCTATAAG+AGG + tig0020047:148805-148824 None:intergenic 45.0%
GAACTGGAACAGCAACTGTA+AGG + tig0020047:148958-148977 None:intergenic 45.0%
GTAACAACAGGCTTACGAAC+TGG + tig0020047:148974-148993 None:intergenic 45.0%
! GGATGGACTTGTCTTTGGTT+TGG + tig0020047:149014-149033 None:intergenic 45.0%
!! GCTGGTCATTTTCTGCTGAA+TGG + tig0020047:149181-149200 None:intergenic 45.0%
AGCAGAAAATGACCAGCTCT+TGG - tig0020047:149184-149203 Msa1378120:CDS 45.0%
GCAGAAAATGACCAGCTCTT+GGG - tig0020047:149185-149204 Msa1378120:CDS 45.0%
CCAGATTGGACCATAAAGCT+TGG + tig0020047:149298-149317 None:intergenic 45.0%
! CCAAGCTTTATGGTCCAATC+TGG - tig0020047:149295-149314 Msa1378120:CDS 45.0%
!! GACAATGAGTTGATCCATGC+TGG + tig0020047:149354-149373 None:intergenic 45.0%
TGGATCAACTCATTGTCAGC+AGG - tig0020047:149357-149376 Msa1378120:intron 45.0%
CTCAGTTGCGAACTACTCAT+TGG - tig0020047:149428-149447 Msa1378120:intron 45.0%
!! AATTACATTAAATAATTTAA+TGG + tig0020047:144634-144653 None:intergenic 5.0%
!!! TTTATTTTTATCATTATTAT+GGG + tig0020047:146698-146717 None:intergenic 5.0%
!!! TTTTATTTTTATCATTATTA+TGG + tig0020047:146699-146718 None:intergenic 5.0%
! GGGGAAGAGTGTGAAAAGGA+AGG + tig0020047:144697-144716 None:intergenic 50.0%
TTGGAAACTGAGGAGCTCGA+GGG + tig0020047:144732-144751 None:intergenic 50.0%
ATTGGAAACTGAGGAGCTCG+AGG + tig0020047:144733-144752 None:intergenic 50.0%
ATAGTCATGGCCACCAGCAA+AGG + tig0020047:144998-145017 None:intergenic 50.0%
TTTGCTGGTGGCCATGACTA+TGG - tig0020047:144997-145016 Msa1378120:three_prime_UTR 50.0%
TTGCAGGTAGATCTAGTGGG+CGG - tig0020047:145219-145238 Msa1378120:CDS 50.0%
TGGGCGGTTACTATGATGCA+GGG - tig0020047:145235-145254 Msa1378120:CDS 50.0%
TGGTGAACTTGGTCATGCCA+TGG - tig0020047:145347-145366 Msa1378120:CDS 50.0%
GCCATGGAAGCTGTGAAATG+GGG - tig0020047:145363-145382 Msa1378120:CDS 50.0%
ACCCCATTTCACAGCTTCCA+TGG + tig0020047:145367-145386 None:intergenic 50.0%
!! CCACAAGTGTTGGCAAAGAC+CGG - tig0020047:145730-145749 Msa1378120:intron 50.0%
AACCTTATAAGCGCGACGGT+CGG + tig0020047:145768-145787 None:intergenic 50.0%
AGATCCGACCCAGGATTACT+TGG + tig0020047:145794-145813 None:intergenic 50.0%
AATGGAAGCAGCAGCCATAG+CGG + tig0020047:145834-145853 None:intergenic 50.0%
GTTAGAGCGACGGAAGACAA+TGG + tig0020047:145852-145871 None:intergenic 50.0%
AAACCTCATAGGCATGACGG+AGG + tig0020047:145895-145914 None:intergenic 50.0%
TGCCACCAAATTGAGCTGCA+TGG - tig0020047:146206-146225 Msa1378120:intron 50.0%
GCCACCAAATTGAGCTGCAT+GGG - tig0020047:146207-146226 Msa1378120:intron 50.0%
ACCCATGCAGCTCAATTTGG+TGG + tig0020047:146211-146230 None:intergenic 50.0%
CCAAATTGAGCTGCATGGGT+CGG - tig0020047:146211-146230 Msa1378120:intron 50.0%
! CGGGTTTTCATGCCTAGTGA+AGG - tig0020047:146785-146804 Msa1378120:CDS 50.0%
AGAAATGGTGACTCCATGGG+TGG - tig0020047:147808-147827 Msa1378120:intron 50.0%
TTCCTGATGCAAGGGAAAGC+TGG - tig0020047:148029-148048 Msa1378120:intron 50.0%
TGACGGTATATTAGGCCACC+AGG + tig0020047:148149-148168 None:intergenic 50.0%
AGGAGAGAAGCTGGGAAGAA+GGG + tig0020047:148280-148299 None:intergenic 50.0%
AAGGAGAGAAGCTGGGAAGA+AGG + tig0020047:148281-148300 None:intergenic 50.0%
CCTCTGTGGTGAACTCTTTG+AGG + tig0020047:148586-148605 None:intergenic 50.0%
CCTCAAAGAGTTCACCACAG+AGG - tig0020047:148583-148602 Msa1378120:intron 50.0%
!! CTAACCGGTGCTATTGTTGG+TGG - tig0020047:148703-148722 Msa1378120:CDS 50.0%
AGGTCCACCAACAATAGCAC+CGG + tig0020047:148710-148729 None:intergenic 50.0%
!! GGAGCATTGTTGTAGGTTGC+TGG + tig0020047:148784-148803 None:intergenic 50.0%
AACCAGCTCCTTCCAGGTAT+TGG - tig0020047:148850-148869 Msa1378120:CDS 50.0%
TACCAAACAGTACCTGGGGA+TGG + tig0020047:149031-149050 None:intergenic 50.0%
! ACCAGCTCTTGGGTTGCAAA+TGG - tig0020047:149195-149214 Msa1378120:CDS 50.0%
TCCATTTGCAACCCAAGAGC+TGG + tig0020047:149199-149218 None:intergenic 50.0%
AACTTTGCGAGTCCCCAGAT+TGG + tig0020047:149312-149331 None:intergenic 50.0%
ATCTGGGGACTCGCAAAGTT+TGG - tig0020047:149312-149331 Msa1378120:CDS 50.0%
CATCTGCTGGAGTGGTAGAA+TGG + tig0020047:149407-149426 None:intergenic 50.0%
AACTGAGACATCTGCTGGAG+TGG + tig0020047:149415-149434 None:intergenic 50.0%
TTCGCAACTGAGACATCTGC+TGG + tig0020047:149420-149439 None:intergenic 50.0%
TGGCCTGAGAACAAGCGATT+TGG - tig0020047:149448-149467 Msa1378120:intron 50.0%
GTGGGCGGTTACTATGATGC+AGG - tig0020047:145234-145253 Msa1378120:CDS 55.0%
GGGCGGTTACTATGATGCAG+GGG - tig0020047:145236-145255 Msa1378120:CDS 55.0%
CCGGTCTTTGCCAACACTTG+TGG + tig0020047:145733-145752 None:intergenic 55.0%
!! CAAGTGTTGGCAAAGACCGG+AGG - tig0020047:145733-145752 Msa1378120:CDS 55.0%
AATCCTGGGTCGGATCTTGC+CGG - tig0020047:145797-145816 Msa1378120:CDS 55.0%
ACTCCTCCGTCATGCCTATG+AGG - tig0020047:145889-145908 Msa1378120:CDS 55.0%
CCGACCCATGCAGCTCAATT+TGG + tig0020047:146214-146233 None:intergenic 55.0%
ATGTCGGTAATTGTGCGCGC+AGG - tig0020047:147714-147733 Msa1378120:intron 55.0%
ACTCCATGGGTGGAACTGGT+TGG - tig0020047:147818-147837 Msa1378120:intron 55.0%
TTGCCAACCAGTTCCACCCA+TGG + tig0020047:147824-147843 None:intergenic 55.0%
CACCAGCTTTCCCTTGCATC+AGG + tig0020047:148034-148053 None:intergenic 55.0%
GGTGTTCTTGCACGACTCAG+TGG - tig0020047:148811-148830 Msa1378120:CDS 55.0%
GTTCTTGCACGACTCAGTGG+TGG - tig0020047:148814-148833 Msa1378120:CDS 55.0%
GGCTATAACCAGCTCCTTCC+AGG - tig0020047:148844-148863 Msa1378120:CDS 55.0%
TGCCAATACCTGGAAGGAGC+TGG + tig0020047:148855-148874 None:intergenic 55.0%
! CCTGGGGATGGACTTGTCTT+TGG + tig0020047:149019-149038 None:intergenic 55.0%
CCAAAGACAAGTCCATCCCC+AGG - tig0020047:149016-149035 Msa1378120:intron 55.0%
! GTCCATCCCCAGGTACTGTT+TGG - tig0020047:149026-149045 Msa1378120:intron 55.0%
ATGGAAGGAGCGGTGCAGAA+AGG - tig0020047:149616-149635 Msa1378120:CDS 55.0%
CGGTCGGTGGTCATATCCTC+CGG + tig0020047:145752-145771 None:intergenic 60.0%
CTTATAAGCGCGACGGTCGG+TGG + tig0020047:145765-145784 None:intergenic 60.0%
CACCGACCGTCGCGCTTATA+AGG - tig0020047:145763-145782 Msa1378120:CDS 60.0%
! GGCATGACGGAGGAGTTCTC+TGG + tig0020047:145885-145904 None:intergenic 60.0%
GAGCTGCATGGGTCGGTACT+CGG - tig0020047:146218-146237 Msa1378120:intron 60.0%
CGCGCAGGACGAATTGCTCT+GGG - tig0020047:147729-147748 Msa1378120:intron 60.0%
! AATTGCTCTGGGCTGCTGCG+TGG - tig0020047:147740-147759 Msa1378120:intron 60.0%
GGTGACTCCATGGGTGGAAC+TGG - tig0020047:147814-147833 Msa1378120:intron 60.0%
GCACGACTCAGTGGTGGTCA+TGG - tig0020047:148820-148839 Msa1378120:CDS 60.0%
CGACTCAGTGGTGGTCATGG+TGG - tig0020047:148823-148842 Msa1378120:CDS 60.0%
TCTCCGGCAAGATCCGACCC+AGG + tig0020047:145803-145822 None:intergenic 65.0%
CATAGCGGCGGCGGTTTCTC+CGG + tig0020047:145819-145838 None:intergenic 65.0%
GGAAGCAGCAGCCATAGCGG+CGG + tig0020047:145831-145850 None:intergenic 65.0%
GCGCGCAGGACGAATTGCTC+TGG - tig0020047:147728-147747 Msa1378120:intron 65.0%
CGGAGAAACCGCCGCCGCTA+TGG - tig0020047:145817-145836 Msa1378120:CDS 70.0%
AGCAGCAGCCATAGCGGCGG+CGG + tig0020047:145828-145847 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020047 gene 144546 150051 144546 ID=Msa1378120;Name=Msa1378120
tig0020047 mRNA 144546 150051 144546 ID=Msa1378120-mRNA-1;Parent=Msa1378120;Name=Msa1378120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=385|1|1|1|1|1|9|596|627
tig0020047 exon 144546 145440 144546 ID=Msa1378120-mRNA-1:exon:5928;Parent=Msa1378120-mRNA-1
tig0020047 exon 145560 145634 145560 ID=Msa1378120-mRNA-1:exon:5927;Parent=Msa1378120-mRNA-1
tig0020047 exon 145732 146080 145732 ID=Msa1378120-mRNA-1:exon:5926;Parent=Msa1378120-mRNA-1
tig0020047 exon 146284 146568 146284 ID=Msa1378120-mRNA-1:exon:5925;Parent=Msa1378120-mRNA-1
tig0020047 exon 146697 146861 146697 ID=Msa1378120-mRNA-1:exon:5924;Parent=Msa1378120-mRNA-1
tig0020047 exon 146952 147041 146952 ID=Msa1378120-mRNA-1:exon:5923;Parent=Msa1378120-mRNA-1
tig0020047 exon 148687 148887 148687 ID=Msa1378120-mRNA-1:exon:5922;Parent=Msa1378120-mRNA-1
tig0020047 exon 149160 149372 149160 ID=Msa1378120-mRNA-1:exon:5921;Parent=Msa1378120-mRNA-1
tig0020047 exon 149460 150051 149460 ID=Msa1378120-mRNA-1:exon:5920;Parent=Msa1378120-mRNA-1
tig0020047 five_prime_UTR 149667 150051 149667 ID=Msa1378120-mRNA-1:five_prime_utr;Parent=Msa1378120-mRNA-1
tig0020047 CDS 149460 149666 149460 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 CDS 149160 149372 149160 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 CDS 148687 148887 148687 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 CDS 146952 147041 146952 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 CDS 146697 146861 146697 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 CDS 146284 146568 146284 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 CDS 145732 146080 145732 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 CDS 145560 145634 145560 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 CDS 145142 145440 145142 ID=Msa1378120-mRNA-1:cds;Parent=Msa1378120-mRNA-1
tig0020047 three_prime_UTR 144546 145141 144546 ID=Msa1378120-mRNA-1:three_prime_utr;Parent=Msa1378120-mRNA-1
Gene Sequence

>Msa1378120

ATGGAAAAGCTAACACAACTCATTTCTATGCTTCCTCTGTTTTTTCTTTTACTTCCATCATTATCCTTTGCTGGTGGCCATGACTATGGCCAAGCTCTAAGCAAGAGCATTATGTTCTTTGAAGCTCAGAGATCTGGTTATCTTCCTCATAACCAAAGAGTTTCATGGAGATCTCATTCTGGTCTTCAAGACGGTAAAGCTAGTGGGGTAGATCTAGTGGGCGGTTACTATGATGCAGGGGATAATGTGAAATTTGGGTTACCAATGGCATTTACTGTTACAATGATGTCATGGAGTATCATTGAATATGGTAAACAAATGGCTAGTAGTGGTGAACTTGGTCATGCCATGGAAGCTGTGAAATGGGGTACTGATTATTTCATTAAAGCTCATCCTCAACCTAATCTTCTCTATGGAGAGGTAGGAGATGGTAACACTGACCACAAGTGTTGGCAAAGACCGGAGGATATGACCACCGACCGTCGCGCTTATAAGGTTGATCCAAGTAATCCTGGGTCGGATCTTGCCGGAGAAACCGCCGCCGCTATGGCTGCTGCTTCCATTGTCTTCCGTCGCTCTAACCCTGCTTATTCCAGAGAACTCCTCCGTCATGCCTATGAGTTGTTTGATTTTGCGGATAAATACAGAGGCAAATATGATAGCAGCATCACAGTTGCACAGAAGTACTACAGATCCATCAGTGGCTACAATGACGAATTGCTCTGGGCTGCTGCGTGGTTGTATCAAGCATCTAACAACCAATATTACTTGGATTACCTTGGTAGAAATGGTGACTCCATGGGTGGAACTGGTTGGCAAATGACTGAATTTAGTTGGGATGTTAAGTATCCTGGTGTTCAGACTTTAGTTGCCAAGTTCCTGATGCAAGGGAAAGCTGGTGTTCATGCACCTGTGTTTGAAAAATATCTGCAAAGGTCTGAGTATTTCATGTGTTCATGCATTGGAAAGGGTACTCGCAATATTCAGAAGACACCTGGTGGCCTAATATACCGTCAAAGATGGAACAACCTGCAATTTGCCACAAGTTCCTCCTTTTTAGCCACTGTCTATTCTGACTACCTTGCTTCTTCTGGTAGAAACTTGAGATGTGCTTCTGGAAATGTCCCTTCTTCCCAGCTTCTCTCCTTTGCAAAGTCTCAGGTGGACTACATTCTTGGAGACAACCCAAGAGCTACAAGTTACATGGTTGGATATGGAAACAATTACCCTCAAAGAGTTCACCACAGAGGTTCATCCATTGTGTCAATCAAGGCTAATCCAAAATTTGTCAGCTGTGTTGGAGGTTATGCTACTTGGTTTAGCAGCAAAAAAAGTAACACCAATGTACTAACCGGTGCTATTGTTGGTGGACCTGATGCTTATGATGACTTTGCCGATGAAAGAAAGAACTATGAACAAACAGAACCAGCAACCTACAACAATGCTCCTCTTATAGGTGTTCTTGCACGACTCAGTGGTGGTCATGGTGGCTATAACCAGCTCCTTCCAGTTGCTGTTCCAGTTCGTAAGCCTGTTGTTACCAAGCAACATTCATTCTCCAAACCAAAGACAAGTCCATCCCCAGCTTCATGGTCAGGCCCAATTTCCATTCAGCAGAAAATGACCAGCTCTTGGGTTGCAAATGGAAGAACTTATTATAGATACTCAACAATTGTGACAAACAAATCAACCAAGAATCTCAAGTCTCTCAATCTTTCAATATCCAAGCTTTATGGTCCAATCTGGGGACTCGCAAAGTTTGGTGATTCATATACATTCCCAGCATGGATCAACTCATTGTCAGCAGGTAAAAGCCTTGAGTTTGTCTACATCCATTCTACCACTCCAGCAGATGTCTCAGTTGCGAACTACTCATTGGCCTGA
Protein sequence

>Msa1378120

MEKLTQLISMLPLFFLLLPSLSFAGGHDYGQALSKSIMFFEAQRSGYLPHNQRVSWRSHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMASSGELGHAMEAVKWGTDYFIKAHPQPNLLYGEVGDGNTDHKCWQRPEDMTTDRRAYKVDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSRELLRHAYELFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWQMTEFSWDVKYPGVQTLVAKFLMQGKAGVHAPVFEKYLQRSEYFMCSCIGKGTRNIQKTPGGLIYRQRWNNLQFATSSSFLATVYSDYLASSGRNLRCASGNVPSSQLLSFAKSQVDYILGDNPRATSYMVGYGNNYPQRVHHRGSSIVSIKANPKFVSCVGGYATWFSSKKSNTNVLTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLIGVLARLSGGHGGYNQLLPVAVPVRKPVVTKQHSFSKPKTSPSPASWSGPISIQQKMTSSWVANGRTYYRYSTIVTNKSTKNLKSLNLSISKLYGPIWGLAKFGDSYTFPAWINSLSAGKSLEFVYIHSTTPADVSVANYSLA*