Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0573780 | XP_003630707.2 | 98.793 | 497 | 6 | 0 | 1 | 497 | 1 | 497 | 0.0 | 1003 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0573780 | sp|Q9SEK3|HXK1_SPIOL | 78.224 | 473 | 103 | 0 | 25 | 497 | 25 | 497 | 0.0 | 776 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0573780 | G7L7F0 | 98.793 | 497 | 6 | 0 | 1 | 497 | 1 | 497 | 0.0 | 1003 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0105420 | Msa0573780 | 0.807687 | 4.474816e-50 | -8.615850e-47 |
Msa0411800 | Msa0573780 | 0.819725 | 9.986882e-53 | -8.615850e-47 |
Msa0573780 | Msa0574170 | 0.812978 | 3.229233e-51 | -8.615850e-47 |
Msa0573780 | Msa0574640 | 0.836307 | 1.010317e-56 | -8.615850e-47 |
Msa0573780 | Msa1099030 | 0.807326 | 5.339335e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0573780 | MtrunA17_Chr8g0389821 | 98.793 | 497 | 6 | 0 | 1 | 497 | 1 | 497 | 0.0 | 1003 |
Msa0573780 | MtrunA17_Chr6g0487071 | 78.280 | 465 | 101 | 0 | 33 | 497 | 31 | 495 | 0.0 | 762 |
Msa0573780 | MtrunA17_Chr8g0340741 | 72.819 | 493 | 133 | 1 | 1 | 493 | 1 | 492 | 0.0 | 736 |
Msa0573780 | MtrunA17_Chr5g0396421 | 57.447 | 470 | 188 | 5 | 30 | 490 | 30 | 496 | 0.0 | 521 |
Msa0573780 | MtrunA17_Chr1g0156571 | 57.395 | 453 | 191 | 2 | 40 | 492 | 42 | 492 | 0.0 | 520 |
Msa0573780 | MtrunA17_Chr4g0054541 | 57.595 | 158 | 65 | 1 | 228 | 385 | 5 | 160 | 3.48e-57 | 187 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0573780 | AT4G29130.1 | 76.673 | 493 | 115 | 0 | 1 | 493 | 1 | 493 | 0.0 | 761 |
Msa0573780 | AT2G19860.1 | 74.900 | 498 | 125 | 0 | 1 | 498 | 1 | 498 | 0.0 | 757 |
Msa0573780 | AT2G19860.2 | 74.807 | 389 | 98 | 0 | 110 | 498 | 1 | 389 | 0.0 | 611 |
Msa0573780 | AT1G50460.1 | 53.700 | 473 | 206 | 4 | 26 | 488 | 26 | 495 | 3.46e-176 | 504 |
Msa0573780 | AT3G20040.1 | 52.024 | 494 | 229 | 3 | 1 | 488 | 1 | 492 | 3.57e-167 | 482 |
Msa0573780 | AT1G47840.1 | 52.735 | 457 | 212 | 4 | 37 | 492 | 40 | 493 | 6.65e-165 | 476 |
Msa0573780 | AT1G50460.3 | 51.724 | 406 | 183 | 4 | 93 | 488 | 17 | 419 | 5.76e-141 | 412 |
Msa0573780 | AT1G50460.2 | 56.495 | 331 | 142 | 2 | 26 | 356 | 26 | 354 | 5.25e-130 | 382 |
Msa0573780 | AT4G37840.1 | 45.416 | 469 | 244 | 5 | 22 | 487 | 23 | 482 | 5.60e-126 | 376 |
Msa0573780 | AT1G47840.2 | 56.075 | 321 | 138 | 3 | 37 | 356 | 40 | 358 | 9.63e-119 | 354 |
Msa0573780 | AT1G47845.1 | 45.294 | 170 | 80 | 4 | 255 | 423 | 26 | 183 | 7.89e-39 | 140 |
Find 163 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTGCTGCTGGTGGTATTT+TGG | 0.099944 | 4_1:+77067088 | Msa0573780:CDS |
AGCTTCTCACTCTCAGTATT+TGG | 0.121428 | 4_1:+77067322 | Msa0573780:CDS |
CTTACCATATTTCCTGATTT+TGG | 0.126779 | 4_1:-77065821 | None:intergenic |
GGTGCTCCTTGGCCGGTAAC+AGG | 0.180159 | 4_1:+77067516 | Msa0573780:three_prime_UTR |
CATTAACTTCACACACAAAA+TGG | 0.219310 | 4_1:-77067940 | None:intergenic |
AGCTACTATGCCTTAGTTAT+TGG | 0.231214 | 4_1:+77067449 | Msa0573780:three_prime_UTR |
GGCATAAGGCCATGCCATTT+TGG | 0.231670 | 4_1:-77065800 | None:intergenic |
TCTTGATCATATTCGGTTAA+AGG | 0.239859 | 4_1:-77065992 | None:intergenic |
GTTATTGCCAAGGTAATTAA+AGG | 0.248601 | 4_1:+77067366 | Msa0573780:three_prime_UTR |
TGGATTCAATTAAATTGTTT+TGG | 0.248940 | 4_1:+77067870 | Msa0573780:three_prime_UTR |
GTGGCATACCTAAGTATAAA+AGG | 0.291655 | 4_1:-77066253 | None:intergenic |
CTTCCAACCTCTTTCAGATC+TGG | 0.295103 | 4_1:-77066853 | None:intergenic |
TATGCCAAAATCAGGAAATA+TGG | 0.303610 | 4_1:+77065817 | Msa0573780:CDS |
CGTGTCCTTCGTGTACATTT+AGG | 0.310233 | 4_1:+77064610 | Msa0573780:CDS |
AAGCAAATTGAAGGATATAT+TGG | 0.315046 | 4_1:+77066873 | Msa0573780:CDS |
ATCAAGATCTTGATCATATT+CGG | 0.322885 | 4_1:-77065999 | None:intergenic |
TGTCTCTTCCTAGTTTCTTA+AGG | 0.338439 | 4_1:-77067115 | None:intergenic |
GCAATTGAGGTTTGCTTCAC+AGG | 0.339001 | 4_1:-77064908 | None:intergenic |
CGCGGTGCACGCCTTGCTGC+TGG | 0.361551 | 4_1:+77067077 | Msa0573780:CDS |
GCTTCTCACTCTCAGTATTT+GGG | 0.370715 | 4_1:+77067323 | Msa0573780:CDS |
ATAACGGGTGCCCCTGTTAC+CGG | 0.370968 | 4_1:-77067528 | None:intergenic |
AGCAAGGCGTGCACCGCGAC+TGG | 0.377407 | 4_1:-77067072 | None:intergenic |
TAGATCTGATTCTGTGGGAT+TGG | 0.378933 | 4_1:-77063194 | None:intergenic |
TATGTTGATAATCTTCCTAC+TGG | 0.383423 | 4_1:+77063711 | Msa0573780:CDS |
ATTGCTTTCTGGCATGTACT+TGG | 0.384273 | 4_1:+77066147 | Msa0573780:CDS |
CGCCGCGGCACAAACGGCGG+CGG | 0.385038 | 4_1:-77063499 | None:intergenic |
GCTGCTGTGATTCTCGGTAC+TGG | 0.385075 | 4_1:+77065740 | Msa0573780:CDS |
TGACAGTGCAGTTAGGAGTT+AGG | 0.389672 | 4_1:-77063291 | None:intergenic |
CACTAAATTCAGAGTTTGCT+TGG | 0.390939 | 4_1:+77067202 | Msa0573780:CDS |
TCTGCTATTGTTGTTAGTAC+TGG | 0.391365 | 4_1:+77067739 | Msa0573780:three_prime_UTR |
AAGAGCCGCCGCGGCACAAA+CGG | 0.391798 | 4_1:-77063505 | None:intergenic |
ACGCGCATGCTATTCCAAAA+TGG | 0.394976 | 4_1:+77065786 | Msa0573780:CDS |
AAGCAAACCTCAATTGCATC+TGG | 0.396002 | 4_1:+77064914 | Msa0573780:CDS |
AATAAAGTTTCCGACTTTGT+TGG | 0.396209 | 4_1:+77063424 | Msa0573780:five_prime_UTR |
GTGCTCCTTGGCCGGTAACA+GGG | 0.398511 | 4_1:+77067517 | Msa0573780:three_prime_UTR |
AGATCTGATTCTGTGGGATT+GGG | 0.401230 | 4_1:-77063193 | None:intergenic |
CAGGCTACATTCCGCAAAAC+AGG | 0.408393 | 4_1:-77067625 | None:intergenic |
TTGTTGTGTGATTAACTAAA+CGG | 0.409138 | 4_1:+77063158 | None:intergenic |
ATCATAATTACCTGTTCTCC+AGG | 0.409907 | 4_1:-77066037 | None:intergenic |
GTCATTGCTGCTGTGATTCT+CGG | 0.415176 | 4_1:+77065734 | Msa0573780:CDS |
TGCCGCCGCCGTTTGTGCCG+CGG | 0.424501 | 4_1:+77063497 | Msa0573780:CDS |
CACGCTTACCTCTGAAGAAC+CGG | 0.425167 | 4_1:-77064698 | None:intergenic |
ATTTATTTATAGTTGAAAAC+AGG | 0.430184 | 4_1:-77067644 | None:intergenic |
GTAGGTTATAAACATGGAAT+GGG | 0.432293 | 4_1:+77065946 | Msa0573780:intron |
CTCTATTATGCTCTAGATCT+TGG | 0.434188 | 4_1:+77064574 | Msa0573780:CDS |
GGTGGAGGATGAAAACCTTC+AGG | 0.434285 | 4_1:-77064848 | None:intergenic |
TTGAAACTTCATCAAACTCT+TGG | 0.434603 | 4_1:-77064657 | None:intergenic |
ATGTAGGTTAATGATACAAT+TGG | 0.441510 | 4_1:+77065677 | Msa0573780:intron |
TTATACAGAGATGCTCTACT+TGG | 0.441914 | 4_1:+77067850 | Msa0573780:three_prime_UTR |
GCTAATGATGGTTCAGGCAT+TGG | 0.443734 | 4_1:+77067284 | Msa0573780:CDS |
ACTAGGAAGAGACACAGTTA+AGG | 0.444325 | 4_1:+77067124 | Msa0573780:CDS |
CATGGCCTTATGCCAAAATC+AGG | 0.445114 | 4_1:+77065809 | Msa0573780:CDS |
GAGCATGCTAATGATGGTTC+AGG | 0.445261 | 4_1:+77067278 | Msa0573780:CDS |
CCGAGTTCTCTTTGTCTGCC+AGG | 0.447341 | 4_1:-77064869 | None:intergenic |
GATACAATTGGAACATTGGC+TGG | 0.447474 | 4_1:+77065689 | Msa0573780:CDS |
AAGCTTAAACCCTGGAGAAC+AGG | 0.452669 | 4_1:+77066027 | Msa0573780:CDS |
TTGTGCCGCGGCGGCTCTTG+TGG | 0.454818 | 4_1:+77063509 | Msa0573780:CDS |
TTGCTTTCTGGCATGTACTT+GGG | 0.455566 | 4_1:+77066148 | Msa0573780:CDS |
TGCTTTCTGGCATGTACTTG+GGG | 0.456526 | 4_1:+77066149 | Msa0573780:CDS |
ACGGAGAGCTTTGTTGAAGA+TGG | 0.457787 | 4_1:+77066180 | Msa0573780:CDS |
AACCCTGCAATCAAAATAAC+GGG | 0.461447 | 4_1:-77067543 | None:intergenic |
TCTCTTTGTCTGCCAGGTGG+AGG | 0.463034 | 4_1:-77064863 | None:intergenic |
GAAAAGTGTGAGACACCAAT+TGG | 0.463065 | 4_1:+77063597 | Msa0573780:CDS |
AAGAAAATGACAGTGCAGTT+AGG | 0.464986 | 4_1:-77063298 | None:intergenic |
TTGGGAATCCTTAAGAAACT+AGG | 0.468333 | 4_1:+77067107 | Msa0573780:CDS |
TGTAGGTTATAAACATGGAA+TGG | 0.471322 | 4_1:+77065945 | Msa0573780:intron |
GGTGCCCCTGTTACCGGCCA+AGG | 0.473202 | 4_1:-77067522 | None:intergenic |
TAGACAGTTGGCTGATGCTA+TGG | 0.474066 | 4_1:+77063626 | Msa0573780:CDS |
TTACATGCCTTTAATTACCT+TGG | 0.477218 | 4_1:-77067373 | None:intergenic |
CTGCTGTGATTCTCGGTACT+GGG | 0.480970 | 4_1:+77065741 | Msa0573780:CDS |
TAGAGTCCCAGATGCAATTG+AGG | 0.487255 | 4_1:-77064921 | None:intergenic |
GACTCTAATAAAGTGGACTA+AGG | 0.488261 | 4_1:+77064937 | Msa0573780:CDS |
GGGAGAACTAACCAAGTCCT+TGG | 0.493228 | 4_1:+77065432 | Msa0573780:CDS |
AACTGTCTAAGCTTTCCAAT+TGG | 0.495017 | 4_1:-77063612 | None:intergenic |
CGGGCAGACCATGTCTGCTG+TGG | 0.495531 | 4_1:+77067492 | Msa0573780:three_prime_UTR |
AAACCCTGCAATCAAAATAA+CGG | 0.500702 | 4_1:-77067544 | None:intergenic |
TGGTGTTGTGTCGTGGTGCA+TGG | 0.502741 | 4_1:-77066833 | None:intergenic |
GTATGATAAGTTCGAGAAAG+TGG | 0.505548 | 4_1:+77063541 | Msa0573780:CDS |
AGCCGCCGCGGCACAAACGG+CGG | 0.505594 | 4_1:-77063502 | None:intergenic |
CAATTGAGGTTTGCTTCACA+GGG | 0.506739 | 4_1:-77064907 | None:intergenic |
TCACATTATTTGCAGGGATG+AGG | 0.508861 | 4_1:+77064546 | Msa0573780:intron |
CCGCGGCGGCTCTTGTGGCG+CGG | 0.509659 | 4_1:+77063514 | Msa0573780:CDS |
ATCCCTCCTCAATTGATGAC+CGG | 0.509765 | 4_1:+77064679 | Msa0573780:CDS |
GGGCAGACCATGTCTGCTGT+GGG | 0.512585 | 4_1:+77067493 | Msa0573780:three_prime_UTR |
CGCCGCCGTTTGTGCCGCGG+CGG | 0.515327 | 4_1:+77063500 | Msa0573780:CDS |
GTCTATAGGACCAATAACTA+AGG | 0.519380 | 4_1:-77067459 | None:intergenic |
TAATGATACAATTGGAACAT+TGG | 0.520504 | 4_1:+77065685 | Msa0573780:CDS |
GAGCTGCAACACGCATATCC+AGG | 0.521304 | 4_1:-77065465 | None:intergenic |
TGCTCCTTGGCCGGTAACAG+GGG | 0.522076 | 4_1:+77067518 | Msa0573780:three_prime_UTR |
CTAGGAAGAGACACAGTTAA+GGG | 0.522099 | 4_1:+77067125 | Msa0573780:CDS |
TGGAGGCAGATTCTACAATC+AGG | 0.523047 | 4_1:+77065709 | Msa0573780:CDS |
TCAGTATTTGGGAGTAGAAG+AGG | 0.523856 | 4_1:+77067334 | Msa0573780:CDS |
CATGCTGGTCTTGCATCTGA+AGG | 0.526173 | 4_1:+77063660 | Msa0573780:CDS |
TTGGATTAAGATTTGAGTGA+TGG | 0.527581 | 4_1:+77063443 | Msa0573780:exon |
CCCGTTAGTTAAAAGTCTAT+AGG | 0.527743 | 4_1:-77067473 | None:intergenic |
GTCGTTGAGCATGCTAATGA+TGG | 0.530025 | 4_1:+77067272 | Msa0573780:CDS |
GATACGCTGAAGGAATTGCT+TGG | 0.531985 | 4_1:+77067227 | Msa0573780:CDS |
CATTTAGGTGGAAAAGAGAA+AGG | 0.537341 | 4_1:+77064625 | Msa0573780:CDS |
AGAGGTTGGAAGCAAATTGA+AGG | 0.538515 | 4_1:+77066864 | Msa0573780:CDS |
TAAGGTCGCGGTGGGAGCTG+CGG | 0.541422 | 4_1:+77063467 | Msa0573780:CDS |
CATCTGGGACTCTAATAAAG+TGG | 0.541566 | 4_1:+77064930 | Msa0573780:CDS |
ATGGATGTTGAGATGCATGC+TGG | 0.543124 | 4_1:+77063645 | Msa0573780:CDS |
AAGTTTAGATCTGATTCTGT+GGG | 0.544444 | 4_1:-77063199 | None:intergenic |
TAAGATTTGAGTGATGGGTA+AGG | 0.546558 | 4_1:+77063449 | Msa0573780:exon |
AAAGTTTAGATCTGATTCTG+TGG | 0.547536 | 4_1:-77063200 | None:intergenic |
GTCCTTCGTGTACATTTAGG+TGG | 0.550016 | 4_1:+77064613 | Msa0573780:CDS |
GATGCTGAAAGCTTAAACCC+TGG | 0.551347 | 4_1:+77066019 | Msa0573780:CDS |
GAAGGAATTGCTTGGAGATG+AGG | 0.552447 | 4_1:+77067235 | Msa0573780:CDS |
TAAATTCAGAGTTTGCTTGG+AGG | 0.552574 | 4_1:+77067205 | Msa0573780:CDS |
GCAGACCATGTCTGCTGTGG+GGG | 0.553349 | 4_1:+77067495 | Msa0573780:three_prime_UTR |
GAAGAACCGGTCATCAATTG+AGG | 0.558178 | 4_1:-77064685 | None:intergenic |
TATTATGCTCTAGATCTTGG+TGG | 0.558418 | 4_1:+77064577 | Msa0573780:CDS |
CAAATTGAAGGATATATTGG+AGG | 0.558923 | 4_1:+77066876 | Msa0573780:CDS |
AATTGGAAAGCTTAGACAGT+TGG | 0.560728 | 4_1:+77063614 | Msa0573780:CDS |
GCAAAAGTCAGTGATAGCAT+TGG | 0.560739 | 4_1:+77067157 | Msa0573780:CDS |
ACACCAGATCTGAAAGAGGT+TGG | 0.565677 | 4_1:+77066850 | Msa0573780:CDS |
GCTGGTCTTGCATCTGAAGG+TGG | 0.566582 | 4_1:+77063663 | Msa0573780:CDS |
CACAACACCAGATCTGAAAG+AGG | 0.571670 | 4_1:+77066846 | Msa0573780:CDS |
TGGATTAAGATTTGAGTGAT+GGG | 0.577136 | 4_1:+77063444 | Msa0573780:exon |
AGCAAACCTCAATTGCATCT+GGG | 0.578513 | 4_1:+77064915 | Msa0573780:CDS |
TTTGTTGAGTCAGAACCTGA+AGG | 0.578841 | 4_1:+77064833 | Msa0573780:CDS |
TTGAGTGATGGGTAAGGTCG+CGG | 0.581116 | 4_1:+77063455 | Msa0573780:exon |
TGTGACATTGTCGCCAGTCG+CGG | 0.581524 | 4_1:+77067059 | Msa0573780:CDS |
GAGTTCTAATGTTATTGCCA+AGG | 0.583639 | 4_1:+77067356 | Msa0573780:exon |
ACTCTAATAAAGTGGACTAA+GGG | 0.584848 | 4_1:+77064938 | Msa0573780:CDS |
ATTATTTGCAGGGATGAGGA+AGG | 0.587877 | 4_1:+77064550 | Msa0573780:intron |
AAATCTTAATCCAACAAAGT+CGG | 0.588607 | 4_1:-77063434 | None:intergenic |
ACTTTCTCGAACTTATCATA+CGG | 0.588844 | 4_1:-77063539 | None:intergenic |
GGTGCACGCCTTGCTGCTGG+TGG | 0.590154 | 4_1:+77067080 | Msa0573780:CDS |
ATTGATGACCGGTTCTTCAG+AGG | 0.592464 | 4_1:+77064690 | Msa0573780:CDS |
GTAGGTTGGCGAAGATGTGG+TGG | 0.593075 | 4_1:+77065411 | Msa0573780:intron |
CCTGGCAGACAAAGAGAACT+CGG | 0.593630 | 4_1:+77064869 | Msa0573780:CDS |
GAGAAAGTGGACACGTAGCG+TGG | 0.594090 | 4_1:+77063554 | Msa0573780:CDS |
CCAAAATACCACCAGCAGCA+AGG | 0.595952 | 4_1:-77067088 | None:intergenic |
TTAAAGGAAGATGTGATGAT+CGG | 0.599131 | 4_1:-77065976 | None:intergenic |
CCGCGCCACAAGAGCCGCCG+CGG | 0.599159 | 4_1:-77063514 | None:intergenic |
GGCAGACCATGTCTGCTGTG+GGG | 0.600343 | 4_1:+77067494 | Msa0573780:three_prime_UTR |
TTGCTTGGAGGATACGCTGA+AGG | 0.604070 | 4_1:+77067217 | Msa0573780:CDS |
CATGCTATTCCAAAATGGCA+TGG | 0.605628 | 4_1:+77065791 | Msa0573780:CDS |
AAGTCAGTGATAGCATTGGA+TGG | 0.608938 | 4_1:+77067161 | Msa0573780:CDS |
TCATAATTACCTGTTCTCCA+GGG | 0.609665 | 4_1:-77066036 | None:intergenic |
GAACCGGTCATCAATTGAGG+AGG | 0.615013 | 4_1:-77064682 | None:intergenic |
TCAGATCTGGTGTTGTGTCG+TGG | 0.616704 | 4_1:-77066840 | None:intergenic |
TGAATGAGAGAAACAAAGTG+AGG | 0.616996 | 4_1:-77063395 | None:intergenic |
AGTGATGGGTAAGGTCGCGG+TGG | 0.620275 | 4_1:+77063458 | Msa0573780:exon |
TTTGTTGAAGATGGCCGAAG+AGG | 0.622326 | 4_1:+77066189 | Msa0573780:CDS |
AGTTCTCTTTGTCTGCCAGG+TGG | 0.622694 | 4_1:-77064866 | None:intergenic |
TGGTGCATGGAAGACATGTC+AGG | 0.624431 | 4_1:-77066820 | None:intergenic |
GCTTTCTGGCATGTACTTGG+GGG | 0.629925 | 4_1:+77066150 | Msa0573780:CDS |
CTTGTAGGTTGGCGAAGATG+TGG | 0.639851 | 4_1:+77065408 | Msa0573780:intron |
GTGATGGGTAAGGTCGCGGT+GGG | 0.648560 | 4_1:+77063459 | Msa0573780:exon |
CTAAATGTACACGAAGGACA+CGG | 0.650048 | 4_1:-77064609 | None:intergenic |
ATGTTGATAATCTTCCTACT+GGG | 0.651766 | 4_1:+77063712 | Msa0573780:CDS |
GGAAGAGACACAGTTAAGGG+TGG | 0.653081 | 4_1:+77067128 | Msa0573780:CDS |
AATACTGTAGGTTATAAACA+TGG | 0.656730 | 4_1:+77065940 | Msa0573780:intron |
AACCGGTCATCAATTGAGGA+GGG | 0.663823 | 4_1:-77064681 | None:intergenic |
ATTAGCATGCTCAACGACAA+CGG | 0.666183 | 4_1:-77067267 | None:intergenic |
TAGGTTGGCGAAGATGTGGT+GGG | 0.672008 | 4_1:+77065412 | Msa0573780:intron |
TAGTGACTGACTGACCCAGT+AGG | 0.676585 | 4_1:-77063726 | None:intergenic |
TCAGTGATAGCATTGGATGG+AGG | 0.680482 | 4_1:+77067164 | Msa0573780:CDS |
TAGGTTATAAACATGGAATG+GGG | 0.681790 | 4_1:+77065947 | Msa0573780:intron |
ACAATTGGAACATTGGCTGG+AGG | 0.694331 | 4_1:+77065692 | Msa0573780:CDS |
TTCCACCTAAATGTACACGA+AGG | 0.716522 | 4_1:-77064615 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAAATTGTAAAAGAAAT+AGG | - | chr4_1:77065123-77065142 | None:intergenic | 10.0% |
!!! | TCTTTTACAATTTTTATAAA+CGG | + | chr4_1:77065126-77065145 | Msa0573780:intron | 10.0% |
!!! | AAACTTTTGATTTAAAAAAA+GGG | - | chr4_1:77067793-77067812 | None:intergenic | 10.0% |
!!! | ATTTTGACATATTTGAATAT+TGG | + | chr4_1:77064063-77064082 | Msa0573780:intron | 15.0% |
!! | AAGAATTTACATGATTATAA+TGG | + | chr4_1:77064345-77064364 | Msa0573780:intron | 15.0% |
!! | AGAATTTACATGATTATAAT+GGG | + | chr4_1:77064346-77064365 | Msa0573780:intron | 15.0% |
!! | TAGGAAAATAAAAACAAAAA+AGG | - | chr4_1:77066537-77066556 | None:intergenic | 15.0% |
!!! | CTTTTAACATCTTTTATATT+AGG | + | chr4_1:77066794-77066813 | Msa0573780:intron | 15.0% |
!! | ATTTATTTATAGTTGAAAAC+AGG | - | chr4_1:77067647-77067666 | None:intergenic | 15.0% |
!!! | TTTTCAACTATAAATAAATC+AGG | + | chr4_1:77067648-77067667 | Msa0573780:three_prime_UTR | 15.0% |
!!! | GAAACTTTTGATTTAAAAAA+AGG | - | chr4_1:77067794-77067813 | None:intergenic | 15.0% |
!!! | TTATTCTTATTTTTTGTGCA+TGG | - | chr4_1:77063326-77063345 | None:intergenic | 20.0% |
!!! | ACATTTTTTTATTCGACTTT+TGG | + | chr4_1:77064007-77064026 | Msa0573780:intron | 20.0% |
!! | AAAATCATAATCAATTCTGT+AGG | - | chr4_1:77064114-77064133 | None:intergenic | 20.0% |
!! | TACATCATGTATAAATAAGT+GGG | - | chr4_1:77064200-77064219 | None:intergenic | 20.0% |
!! | ATACATCATGTATAAATAAG+TGG | - | chr4_1:77064201-77064220 | None:intergenic | 20.0% |
!! | AGTCAATGTAAAAAGAATTA+CGG | - | chr4_1:77064981-77065000 | None:intergenic | 20.0% |
!!! | TAATGTTTTTAGAAGTAAAC+AGG | + | chr4_1:77065319-77065338 | Msa0573780:intron | 20.0% |
!!! | TTTTTAGTTTTAGCAATTCT+TGG | + | chr4_1:77065609-77065628 | Msa0573780:intron | 20.0% |
!! | TACAGTATTTAGAAGTAATT+TGG | - | chr4_1:77065929-77065948 | None:intergenic | 20.0% |
!! | AAATTACTTCTAAATACTGT+AGG | + | chr4_1:77065928-77065947 | Msa0573780:intron | 20.0% |
!!! | TAAAAGGAATTTTCAACTTA+GGG | - | chr4_1:77066240-77066259 | None:intergenic | 20.0% |
!!! | ATAAAAGGAATTTTCAACTT+AGG | - | chr4_1:77066241-77066260 | None:intergenic | 20.0% |
!!! | TGAAAATTCCTTTTATACTT+AGG | + | chr4_1:77066245-77066264 | Msa0573780:CDS | 20.0% |
!! | ATGCTAATGATTCAAAAAAT+AGG | - | chr4_1:77066556-77066575 | None:intergenic | 20.0% |
!!! | CATTACATTTTTATCCAAAT+TGG | + | chr4_1:77066573-77066592 | Msa0573780:intron | 20.0% |
!! | AGAAAGAATTGAAAATATCT+AGG | - | chr4_1:77066635-77066654 | None:intergenic | 20.0% |
!! | CAAAACAAAAAATATCAAAC+TGG | - | chr4_1:77067401-77067420 | None:intergenic | 20.0% |
!! | AAAAGGGAAAAATATAAAAG+AGG | - | chr4_1:77067777-77067796 | None:intergenic | 20.0% |
!!! | TGCACATGTTTTAAAAATAA+AGG | - | chr4_1:77067816-77067835 | None:intergenic | 20.0% |
!!! | TGGATTCAATTAAATTGTTT+TGG | + | chr4_1:77067870-77067889 | Msa0573780:three_prime_UTR | 20.0% |
! | AAATCTTAATCCAACAAAGT+CGG | - | chr4_1:77063437-77063456 | None:intergenic | 25.0% |
!! | AAAGAAAAGTTGTTGATTAG+AGG | + | chr4_1:77063968-77063987 | Msa0573780:intron | 25.0% |
!! | ATTTACATGATTATAATGGG+AGG | + | chr4_1:77064349-77064368 | Msa0573780:intron | 25.0% |
! | AACACAAAATCAAATGCTTT+CGG | - | chr4_1:77064459-77064478 | None:intergenic | 25.0% |
! | CAATGTGAAAAATTACTCAA+AGG | - | chr4_1:77064526-77064545 | None:intergenic | 25.0% |
!!! | TTGATTTTGTTGTTTGTTAC+AGG | + | chr4_1:77064775-77064794 | Msa0573780:intron | 25.0% |
!!! | TGATTTTGTTGTTTGTTACA+GGG | + | chr4_1:77064776-77064795 | Msa0573780:intron | 25.0% |
! | TAAATAACAACACGAAACAA+TGG | - | chr4_1:77065031-77065050 | None:intergenic | 25.0% |
! | AGAAATAGGAAGAGAAATAT+TGG | - | chr4_1:77065109-77065128 | None:intergenic | 25.0% |
! | CTGAAAACAAAGAGAAAAAT+GGG | - | chr4_1:77065345-77065364 | None:intergenic | 25.0% |
! | TCTGAAAACAAAGAGAAAAA+TGG | - | chr4_1:77065346-77065365 | None:intergenic | 25.0% |
! | AAATACAGAAATCCTAAAAG+AGG | - | chr4_1:77065507-77065526 | None:intergenic | 25.0% |
!!! | AACAGGTTAGTTTTATTTAG+AGG | - | chr4_1:77065651-77065670 | None:intergenic | 25.0% |
! | ATGTAGGTTAATGATACAAT+TGG | + | chr4_1:77065677-77065696 | Msa0573780:intron | 25.0% |
! | TAATGATACAATTGGAACAT+TGG | + | chr4_1:77065685-77065704 | Msa0573780:CDS | 25.0% |
! | AATACTGTAGGTTATAAACA+TGG | + | chr4_1:77065940-77065959 | Msa0573780:intron | 25.0% |
! | ATCAAGATCTTGATCATATT+CGG | - | chr4_1:77066002-77066021 | None:intergenic | 25.0% |
! | AATTTCTCAAAAATCTGTGA+AGG | - | chr4_1:77066130-77066149 | None:intergenic | 25.0% |
!!! | ATTTTTGAGAAATTGCTTTC+TGG | + | chr4_1:77066136-77066155 | Msa0573780:CDS | 25.0% |
!! | AAAAGGAATTTTCAACTTAG+GGG | - | chr4_1:77066239-77066258 | None:intergenic | 25.0% |
! | AAAAGGAATCATTATTGACA+TGG | - | chr4_1:77066283-77066302 | None:intergenic | 25.0% |
! | ATTCATGCAATTAATAACCA+AGG | - | chr4_1:77066314-77066333 | None:intergenic | 25.0% |
!! | CTTTTACCAAGAATCAATAA+GGG | - | chr4_1:77066431-77066450 | None:intergenic | 25.0% |
!! | CATTTTTATCCAAATTGGTA+TGG | + | chr4_1:77066578-77066597 | Msa0573780:intron | 25.0% |
! | AAGATTTATGTAACTCAACA+GGG | - | chr4_1:77066733-77066752 | None:intergenic | 25.0% |
! | AAGCAAATTGAAGGATATAT+TGG | + | chr4_1:77066873-77066892 | Msa0573780:CDS | 25.0% |
! | ATGAAAGTCATATTTCAACA+TGG | - | chr4_1:77066919-77066938 | None:intergenic | 25.0% |
! | CTTATCCATTTGATAGAAAA+TGG | - | chr4_1:77066967-77066986 | None:intergenic | 25.0% |
!!! | TCCTATAGACTTTTAACTAA+CGG | + | chr4_1:77067472-77067491 | Msa0573780:three_prime_UTR | 25.0% |
AAGTTTAGATCTGATTCTGT+GGG | - | chr4_1:77063202-77063221 | None:intergenic | 30.0% | |
AAAGTTTAGATCTGATTCTG+TGG | - | chr4_1:77063203-77063222 | None:intergenic | 30.0% | |
AATAAAGTTTCCGACTTTGT+TGG | + | chr4_1:77063424-77063443 | Msa0573780:five_prime_UTR | 30.0% | |
TTGGATTAAGATTTGAGTGA+TGG | + | chr4_1:77063443-77063462 | Msa0573780:exon | 30.0% | |
TGGATTAAGATTTGAGTGAT+GGG | + | chr4_1:77063444-77063463 | Msa0573780:exon | 30.0% | |
ACTTTCTCGAACTTATCATA+CGG | - | chr4_1:77063542-77063561 | None:intergenic | 30.0% | |
!! | TATGTTGATAATCTTCCTAC+TGG | + | chr4_1:77063711-77063730 | Msa0573780:CDS | 30.0% |
!! | ATGTTGATAATCTTCCTACT+GGG | + | chr4_1:77063712-77063731 | Msa0573780:CDS | 30.0% |
!! | TCTTTTTCATCTTCGATTTG+TGG | + | chr4_1:77063765-77063784 | Msa0573780:intron | 30.0% |
TACAATCACAAATCATGGAT+TGG | - | chr4_1:77063927-77063946 | None:intergenic | 30.0% | |
CAGAATACAATCACAAATCA+TGG | - | chr4_1:77063932-77063951 | None:intergenic | 30.0% | |
! | CATGATTTGTGATTGTATTC+TGG | + | chr4_1:77063930-77063949 | Msa0573780:intron | 30.0% |
TTGTGATTGTATTCTGGTAT+TGG | + | chr4_1:77063936-77063955 | Msa0573780:intron | 30.0% | |
!! | TTTTATTCGACTTTTGGAGA+TGG | + | chr4_1:77064013-77064032 | Msa0573780:intron | 30.0% |
ATTCATTTCTGACGAAAAGT+GGG | - | chr4_1:77064240-77064259 | None:intergenic | 30.0% | |
AATTCATTTCTGACGAAAAG+TGG | - | chr4_1:77064241-77064260 | None:intergenic | 30.0% | |
! | GATTTTGTGTTGTGAAAGTT+TGG | + | chr4_1:77064468-77064487 | Msa0573780:intron | 30.0% |
ACATTGTCACATTATTTGCA+GGG | + | chr4_1:77064540-77064559 | Msa0573780:intron | 30.0% | |
TTGAAACTTCATCAAACTCT+TGG | - | chr4_1:77064660-77064679 | None:intergenic | 30.0% | |
!! | ACTCTAATAAAGTGGACTAA+GGG | + | chr4_1:77064938-77064957 | Msa0573780:CDS | 30.0% |
! | AGACAATGAAAACAGTGTTT+TGG | - | chr4_1:77065182-77065201 | None:intergenic | 30.0% |
TCAGAAATTCTCTCATTGAA+TGG | + | chr4_1:77065361-77065380 | Msa0573780:intron | 30.0% | |
AATTTGTCTCTGACTGAATT+TGG | + | chr4_1:77065560-77065579 | Msa0573780:intron | 30.0% | |
!! | TTTGGAGTTACAAGGTTTTA+TGG | + | chr4_1:77065578-77065597 | Msa0573780:intron | 30.0% |
TTAACCTACATAACATCAAC+AGG | - | chr4_1:77065668-77065687 | None:intergenic | 30.0% | |
!! | TATTTCCTGATTTTGGCATA+AGG | - | chr4_1:77065817-77065836 | None:intergenic | 30.0% |
TATGCCAAAATCAGGAAATA+TGG | + | chr4_1:77065817-77065836 | Msa0573780:CDS | 30.0% | |
! | CTTACCATATTTCCTGATTT+TGG | - | chr4_1:77065824-77065843 | None:intergenic | 30.0% |
CAAAATCAGGAAATATGGTA+AGG | + | chr4_1:77065822-77065841 | Msa0573780:intron | 30.0% | |
TGGTAAGGTTATGAGTAATT+AGG | + | chr4_1:77065837-77065856 | Msa0573780:intron | 30.0% | |
ATTTAGAAGTAATTTGGCAC+CGG | - | chr4_1:77065923-77065942 | None:intergenic | 30.0% | |
TGTAGGTTATAAACATGGAA+TGG | + | chr4_1:77065945-77065964 | Msa0573780:intron | 30.0% | |
GTAGGTTATAAACATGGAAT+GGG | + | chr4_1:77065946-77065965 | Msa0573780:intron | 30.0% | |
TAGGTTATAAACATGGAATG+GGG | + | chr4_1:77065947-77065966 | Msa0573780:intron | 30.0% | |
TTAAAGGAAGATGTGATGAT+CGG | - | chr4_1:77065979-77065998 | None:intergenic | 30.0% | |
TCTTGATCATATTCGGTTAA+AGG | - | chr4_1:77065995-77066014 | None:intergenic | 30.0% | |
! | AAAGGAATTTTCAACTTAGG+GGG | - | chr4_1:77066238-77066257 | None:intergenic | 30.0% |
TCATTATTGACATGGTTTAG+TGG | - | chr4_1:77066275-77066294 | None:intergenic | 30.0% | |
! | ATTCCTTTTATACTTAGCCT+TGG | + | chr4_1:77066294-77066313 | Msa0573780:intron | 30.0% |
TAACCAAGGCTAAGTATAAA+AGG | - | chr4_1:77066300-77066319 | None:intergenic | 30.0% | |
CAATAAGGGTGAAAATAAGA+GGG | - | chr4_1:77066417-77066436 | None:intergenic | 30.0% | |
TCAATAAGGGTGAAAATAAG+AGG | - | chr4_1:77066418-77066437 | None:intergenic | 30.0% | |
!!! | TTTTCACCCTTATTGATTCT+TGG | + | chr4_1:77066422-77066441 | Msa0573780:intron | 30.0% |
! | GCTTTTACCAAGAATCAATA+AGG | - | chr4_1:77066432-77066451 | None:intergenic | 30.0% |
! | ATTGATTCTTGGTAAAAGCT+TGG | + | chr4_1:77066433-77066452 | Msa0573780:intron | 30.0% |
AAAGCTTGGATGAATGAAAA+TGG | + | chr4_1:77066447-77066466 | Msa0573780:intron | 30.0% | |
! | CAAAAAAGGTATGTTACTAC+TGG | - | chr4_1:77066523-77066542 | None:intergenic | 30.0% |
! | GTATGGAAGTTTTCCTAAAA+TGG | + | chr4_1:77066595-77066614 | Msa0573780:intron | 30.0% |
GAAGATTTATGTAACTCAAC+AGG | - | chr4_1:77066734-77066753 | None:intergenic | 30.0% | |
CAAATTGAAGGATATATTGG+AGG | + | chr4_1:77066876-77066895 | Msa0573780:CDS | 30.0% | |
ACTATATAGGATGATATGTG+AGG | - | chr4_1:77066943-77066962 | None:intergenic | 30.0% | |
GATAGAAAATGGCACTATAT+AGG | - | chr4_1:77066956-77066975 | None:intergenic | 30.0% | |
!!! | TAGTGCCATTTTCTATCAAA+TGG | + | chr4_1:77066959-77066978 | Msa0573780:intron | 30.0% |
GTATTAGAGATCTGACAAAA+AGG | - | chr4_1:77067005-77067024 | None:intergenic | 30.0% | |
CTAATACATCACTAAAAACG+AGG | + | chr4_1:77067018-77067037 | Msa0573780:CDS | 30.0% | |
GTTATTGCCAAGGTAATTAA+AGG | + | chr4_1:77067366-77067385 | Msa0573780:three_prime_UTR | 30.0% | |
TTACATGCCTTTAATTACCT+TGG | - | chr4_1:77067376-77067395 | None:intergenic | 30.0% | |
!! | CCTATAGACTTTTAACTAAC+GGG | + | chr4_1:77067473-77067492 | Msa0573780:three_prime_UTR | 30.0% |
AAACCCTGCAATCAAAATAA+CGG | - | chr4_1:77067547-77067566 | None:intergenic | 30.0% | |
!! | GGTTTGCTTCTTCTATTTTA+TGG | + | chr4_1:77067562-77067581 | Msa0573780:three_prime_UTR | 30.0% |
AAATGCTGTGAATCAAAAAC+GGG | - | chr4_1:77067690-77067709 | None:intergenic | 30.0% | |
GAAATGCTGTGAATCAAAAA+CGG | - | chr4_1:77067691-77067710 | None:intergenic | 30.0% | |
GGGAAAAATATAAAAGAGGT+TGG | - | chr4_1:77067773-77067792 | None:intergenic | 30.0% | |
!!! | GTTTTGGAGAAATGAATGAA+TGG | + | chr4_1:77067886-77067905 | Msa0573780:three_prime_UTR | 30.0% |
AAGAAAATGACAGTGCAGTT+AGG | - | chr4_1:77063301-77063320 | None:intergenic | 35.0% | |
TGAATGAGAGAAACAAAGTG+AGG | - | chr4_1:77063398-77063417 | None:intergenic | 35.0% | |
!! | TAAGATTTGAGTGATGGGTA+AGG | + | chr4_1:77063449-77063468 | Msa0573780:exon | 35.0% |
GTATGATAAGTTCGAGAAAG+TGG | + | chr4_1:77063541-77063560 | Msa0573780:CDS | 35.0% | |
!! | TGGCTATTTTGAAGGAGTTT+GGG | + | chr4_1:77063574-77063593 | Msa0573780:CDS | 35.0% |
AACTGTCTAAGCTTTCCAAT+TGG | - | chr4_1:77063615-77063634 | None:intergenic | 35.0% | |
AATTGGAAAGCTTAGACAGT+TGG | + | chr4_1:77063614-77063633 | Msa0573780:CDS | 35.0% | |
GAGGCTAAAAACAATTGTAG+AGG | - | chr4_1:77064162-77064181 | None:intergenic | 35.0% | |
! | TGGGTTGAACAGTAAATTTG+AGG | - | chr4_1:77064181-77064200 | None:intergenic | 35.0% |
!! | AAGTGGGTTGAATGTATGTT+TGG | - | chr4_1:77064224-77064243 | None:intergenic | 35.0% |
GATGATTCAGTCACATTGAA+TGG | + | chr4_1:77064421-77064440 | Msa0573780:intron | 35.0% | |
CACATTGTCACATTATTTGC+AGG | + | chr4_1:77064539-77064558 | Msa0573780:intron | 35.0% | |
! | CTCTATTATGCTCTAGATCT+TGG | + | chr4_1:77064574-77064593 | Msa0573780:CDS | 35.0% |
! | TATTATGCTCTAGATCTTGG+TGG | + | chr4_1:77064577-77064596 | Msa0573780:CDS | 35.0% |
CATTTAGGTGGAAAAGAGAA+AGG | + | chr4_1:77064625-77064644 | Msa0573780:CDS | 35.0% | |
!! | GACTCTAATAAAGTGGACTA+AGG | + | chr4_1:77064937-77064956 | Msa0573780:CDS | 35.0% |
GAGAGACTCATTTAAGTATC+TGG | - | chr4_1:77065075-77065094 | None:intergenic | 35.0% | |
GAGTCTTTCATCTCATTGTT+AGG | + | chr4_1:77065257-77065276 | Msa0573780:intron | 35.0% | |
ACCAAGTCCTTGGAAAAAAT+TGG | + | chr4_1:77065442-77065461 | Msa0573780:CDS | 35.0% | |
! | TGACTGAATTTGGAGTTACA+AGG | + | chr4_1:77065570-77065589 | Msa0573780:intron | 35.0% |
CTAACCTGTTGATGTTATGT+AGG | + | chr4_1:77065661-77065680 | Msa0573780:intron | 35.0% | |
TTTAGAAGTAATTTGGCACC+GGG | - | chr4_1:77065922-77065941 | None:intergenic | 35.0% | |
TCATAATTACCTGTTCTCCA+GGG | - | chr4_1:77066039-77066058 | None:intergenic | 35.0% | |
ATCATAATTACCTGTTCTCC+AGG | - | chr4_1:77066040-77066059 | None:intergenic | 35.0% | |
AAGGATGCTACAAATTCACA+TGG | - | chr4_1:77066093-77066112 | None:intergenic | 35.0% | |
TCTCAAAAATCTGTGAAGGA+TGG | - | chr4_1:77066126-77066145 | None:intergenic | 35.0% | |
GTGGCATACCTAAGTATAAA+AGG | - | chr4_1:77066256-77066275 | None:intergenic | 35.0% | |
AACCAAGGCTGATACTAAAA+TGG | - | chr4_1:77066394-77066413 | None:intergenic | 35.0% | |
GGAAAACTTCCATACCAATT+TGG | - | chr4_1:77066590-77066609 | None:intergenic | 35.0% | |
AATAAGGAGTTCTGCTTGTA+TGG | - | chr4_1:77066679-77066698 | None:intergenic | 35.0% | |
AGGGCAAAGGAATGAAAATA+AGG | - | chr4_1:77066695-77066714 | None:intergenic | 35.0% | |
AGGGTAAAACAGGTGATAAA+GGG | - | chr4_1:77066714-77066733 | None:intergenic | 35.0% | |
AAAAACGAGGAAGATTGTTG+TGG | + | chr4_1:77067031-77067050 | Msa0573780:CDS | 35.0% | |
TTGGGAATCCTTAAGAAACT+AGG | + | chr4_1:77067107-77067126 | Msa0573780:CDS | 35.0% | |
TGTCTCTTCCTAGTTTCTTA+AGG | - | chr4_1:77067118-77067137 | None:intergenic | 35.0% | |
! | CACTAAATTCAGAGTTTGCT+TGG | + | chr4_1:77067202-77067221 | Msa0573780:CDS | 35.0% |
! | TAAATTCAGAGTTTGCTTGG+AGG | + | chr4_1:77067205-77067224 | Msa0573780:CDS | 35.0% |
! | GAGTTCTAATGTTATTGCCA+AGG | + | chr4_1:77067356-77067375 | Msa0573780:exon | 35.0% |
AGCTACTATGCCTTAGTTAT+TGG | + | chr4_1:77067449-77067468 | Msa0573780:three_prime_UTR | 35.0% | |
GTCTATAGGACCAATAACTA+AGG | - | chr4_1:77067462-77067481 | None:intergenic | 35.0% | |
CCCGTTAGTTAAAAGTCTAT+AGG | - | chr4_1:77067476-77067495 | None:intergenic | 35.0% | |
AACCCTGCAATCAAAATAAC+GGG | - | chr4_1:77067546-77067565 | None:intergenic | 35.0% | |
! | TTTGAGTGTATCCTGTTTTG+CGG | + | chr4_1:77067614-77067633 | Msa0573780:three_prime_UTR | 35.0% |
! | TCTGCTATTGTTGTTAGTAC+TGG | + | chr4_1:77067739-77067758 | Msa0573780:three_prime_UTR | 35.0% |
TTATACAGAGATGCTCTACT+TGG | + | chr4_1:77067850-77067869 | Msa0573780:three_prime_UTR | 35.0% | |
AGATCTGATTCTGTGGGATT+GGG | - | chr4_1:77063196-77063215 | None:intergenic | 40.0% | |
TAGATCTGATTCTGTGGGAT+TGG | - | chr4_1:77063197-77063216 | None:intergenic | 40.0% | |
!! | GTGGCTATTTTGAAGGAGTT+TGG | + | chr4_1:77063573-77063592 | Msa0573780:CDS | 40.0% |
!! | GGCTATTTTGAAGGAGTTTG+GGG | + | chr4_1:77063575-77063594 | Msa0573780:CDS | 40.0% |
! | GAAAAGTGTGAGACACCAAT+TGG | + | chr4_1:77063597-77063616 | Msa0573780:CDS | 40.0% |
GTGACTGAATCATCAACAAG+TGG | - | chr4_1:77064415-77064434 | None:intergenic | 40.0% | |
TCACATTATTTGCAGGGATG+AGG | + | chr4_1:77064546-77064565 | Msa0573780:intron | 40.0% | |
ATTATTTGCAGGGATGAGGA+AGG | + | chr4_1:77064550-77064569 | Msa0573780:intron | 40.0% | |
CTAAATGTACACGAAGGACA+CGG | - | chr4_1:77064612-77064631 | None:intergenic | 40.0% | |
TTCCACCTAAATGTACACGA+AGG | - | chr4_1:77064618-77064637 | None:intergenic | 40.0% | |
TTTGTTGAGTCAGAACCTGA+AGG | + | chr4_1:77064833-77064852 | Msa0573780:CDS | 40.0% | |
! | CAATTGAGGTTTGCTTCACA+GGG | - | chr4_1:77064910-77064929 | None:intergenic | 40.0% |
AAGCAAACCTCAATTGCATC+TGG | + | chr4_1:77064914-77064933 | Msa0573780:CDS | 40.0% | |
AGCAAACCTCAATTGCATCT+GGG | + | chr4_1:77064915-77064934 | Msa0573780:CDS | 40.0% | |
! | CATCTGGGACTCTAATAAAG+TGG | + | chr4_1:77064930-77064949 | Msa0573780:CDS | 40.0% |
TTGAATGGTCATCTGACAGT+TGG | + | chr4_1:77065376-77065395 | Msa0573780:intron | 40.0% | |
!!! | GCCAATTTTTTCCAAGGACT+TGG | - | chr4_1:77065446-77065465 | None:intergenic | 40.0% |
!!! | ATCCAGGCCAATTTTTTCCA+AGG | - | chr4_1:77065452-77065471 | None:intergenic | 40.0% |
! | CAGTCTCATTCTCCTCTTTT+AGG | + | chr4_1:77065492-77065511 | Msa0573780:intron | 40.0% |
GATACAATTGGAACATTGGC+TGG | + | chr4_1:77065689-77065708 | Msa0573780:CDS | 40.0% | |
CATGCTATTCCAAAATGGCA+TGG | + | chr4_1:77065791-77065810 | Msa0573780:CDS | 40.0% | |
TGTCTTACGATGCTACTAAG+AGG | + | chr4_1:77065882-77065901 | Msa0573780:intron | 40.0% | |
CAAAAATCTGTGAAGGATGG+TGG | - | chr4_1:77066123-77066142 | None:intergenic | 40.0% | |
! | ATTGCTTTCTGGCATGTACT+TGG | + | chr4_1:77066147-77066166 | Msa0573780:CDS | 40.0% |
! | TTGCTTTCTGGCATGTACTT+GGG | + | chr4_1:77066148-77066167 | Msa0573780:CDS | 40.0% |
TGTACTTGGGGGAAATTGTA+CGG | + | chr4_1:77066161-77066180 | Msa0573780:CDS | 40.0% | |
TCCGAAAAATTCAGCCTCTT+CGG | - | chr4_1:77066206-77066225 | None:intergenic | 40.0% | |
!! | GACCATTTTAGTATCAGCCT+TGG | + | chr4_1:77066389-77066408 | Msa0573780:intron | 40.0% |
GTGAAAATAAGAGGGAACCA+AGG | - | chr4_1:77066409-77066428 | None:intergenic | 40.0% | |
! | CTACGTTTGCGTTCCATTTT+AGG | - | chr4_1:77066611-77066630 | None:intergenic | 40.0% |
CTAAAATGGAACGCAAACGT+AGG | + | chr4_1:77066609-77066628 | Msa0573780:intron | 40.0% | |
AAACAGGTGATAAAGGGCAA+AGG | - | chr4_1:77066708-77066727 | None:intergenic | 40.0% | |
CAGGGTAAAACAGGTGATAA+AGG | - | chr4_1:77066715-77066734 | None:intergenic | 40.0% | |
GTAACTCAACAGGGTAAAAC+AGG | - | chr4_1:77066724-77066743 | None:intergenic | 40.0% | |
AGAGGTTGGAAGCAAATTGA+AGG | + | chr4_1:77066864-77066883 | Msa0573780:CDS | 40.0% | |
ACTAGGAAGAGACACAGTTA+AGG | + | chr4_1:77067124-77067143 | Msa0573780:CDS | 40.0% | |
CTAGGAAGAGACACAGTTAA+GGG | + | chr4_1:77067125-77067144 | Msa0573780:CDS | 40.0% | |
GCAAAAGTCAGTGATAGCAT+TGG | + | chr4_1:77067157-77067176 | Msa0573780:CDS | 40.0% | |
! | AAGTCAGTGATAGCATTGGA+TGG | + | chr4_1:77067161-77067180 | Msa0573780:CDS | 40.0% |
ATTAGCATGCTCAACGACAA+CGG | - | chr4_1:77067270-77067289 | None:intergenic | 40.0% | |
AGCTTCTCACTCTCAGTATT+TGG | + | chr4_1:77067322-77067341 | Msa0573780:CDS | 40.0% | |
GCTTCTCACTCTCAGTATTT+GGG | + | chr4_1:77067323-77067342 | Msa0573780:CDS | 40.0% | |
TCAGTATTTGGGAGTAGAAG+AGG | + | chr4_1:77067334-77067353 | Msa0573780:CDS | 40.0% | |
!!! | CACCCGTTATTTTGATTGCA+GGG | + | chr4_1:77067541-77067560 | Msa0573780:three_prime_UTR | 40.0% |
TGACAGTGCAGTTAGGAGTT+AGG | - | chr4_1:77063294-77063313 | None:intergenic | 45.0% | |
!! | ACGTAGCGTGGCTATTTTGA+AGG | + | chr4_1:77063566-77063585 | Msa0573780:CDS | 45.0% |
TAGACAGTTGGCTGATGCTA+TGG | + | chr4_1:77063626-77063645 | Msa0573780:CDS | 45.0% | |
ATGGATGTTGAGATGCATGC+TGG | + | chr4_1:77063645-77063664 | Msa0573780:CDS | 45.0% | |
CGTGTCCTTCGTGTACATTT+AGG | + | chr4_1:77064610-77064629 | Msa0573780:CDS | 45.0% | |
GTCCTTCGTGTACATTTAGG+TGG | + | chr4_1:77064613-77064632 | Msa0573780:CDS | 45.0% | |
! | ATCCCTCCTCAATTGATGAC+CGG | + | chr4_1:77064679-77064698 | Msa0573780:CDS | 45.0% |
AACCGGTCATCAATTGAGGA+GGG | - | chr4_1:77064684-77064703 | None:intergenic | 45.0% | |
GAAGAACCGGTCATCAATTG+AGG | - | chr4_1:77064688-77064707 | None:intergenic | 45.0% | |
! | ATTGATGACCGGTTCTTCAG+AGG | + | chr4_1:77064690-77064709 | Msa0573780:CDS | 45.0% |
TTCAGAGGTAAGCGTGTTCT+GGG | + | chr4_1:77064705-77064724 | Msa0573780:intron | 45.0% | |
! | GCAATTGAGGTTTGCTTCAC+AGG | - | chr4_1:77064911-77064930 | None:intergenic | 45.0% |
TAGAGTCCCAGATGCAATTG+AGG | - | chr4_1:77064924-77064943 | None:intergenic | 45.0% | |
! | AGTTGGTCTCTATCGCTTGT+AGG | + | chr4_1:77065393-77065412 | Msa0573780:intron | 45.0% |
GTCCTTGGAAAAAATTGGCC+TGG | + | chr4_1:77065447-77065466 | Msa0573780:CDS | 45.0% | |
! | ACAATTGGAACATTGGCTGG+AGG | + | chr4_1:77065692-77065711 | Msa0573780:CDS | 45.0% |
TGGAGGCAGATTCTACAATC+AGG | + | chr4_1:77065709-77065728 | Msa0573780:CDS | 45.0% | |
GTCATTGCTGCTGTGATTCT+CGG | + | chr4_1:77065734-77065753 | Msa0573780:CDS | 45.0% | |
ACGCGCATGCTATTCCAAAA+TGG | + | chr4_1:77065786-77065805 | Msa0573780:CDS | 45.0% | |
!! | CATGGCCTTATGCCAAAATC+AGG | + | chr4_1:77065809-77065828 | Msa0573780:CDS | 45.0% |
TTACGATGCTACTAAGAGGC+AGG | + | chr4_1:77065886-77065905 | Msa0573780:intron | 45.0% | |
GATGCTGAAAGCTTAAACCC+TGG | + | chr4_1:77066019-77066038 | Msa0573780:CDS | 45.0% | |
AAGCTTAAACCCTGGAGAAC+AGG | + | chr4_1:77066027-77066046 | Msa0573780:CDS | 45.0% | |
!! | AATCTGTGAAGGATGGTGGA+AGG | - | chr4_1:77066119-77066138 | None:intergenic | 45.0% |
! | TGCTTTCTGGCATGTACTTG+GGG | + | chr4_1:77066149-77066168 | Msa0573780:CDS | 45.0% |
!! | ACGGAGAGCTTTGTTGAAGA+TGG | + | chr4_1:77066180-77066199 | Msa0573780:CDS | 45.0% |
TTTGTTGAAGATGGCCGAAG+AGG | + | chr4_1:77066189-77066208 | Msa0573780:CDS | 45.0% | |
! | GCCGAAGAGGCTGAATTTTT+CGG | + | chr4_1:77066202-77066221 | Msa0573780:CDS | 45.0% |
GCTGTTCAGACTTCTTCATG+TGG | + | chr4_1:77066367-77066386 | Msa0573780:intron | 45.0% | |
CACAACACCAGATCTGAAAG+AGG | + | chr4_1:77066846-77066865 | Msa0573780:CDS | 45.0% | |
ACACCAGATCTGAAAGAGGT+TGG | + | chr4_1:77066850-77066869 | Msa0573780:CDS | 45.0% | |
CTTCCAACCTCTTTCAGATC+TGG | - | chr4_1:77066856-77066875 | None:intergenic | 45.0% | |
! | CTTGCTGCTGGTGGTATTTT+GGG | + | chr4_1:77067089-77067108 | Msa0573780:CDS | 45.0% |
! | TCAGTGATAGCATTGGATGG+AGG | + | chr4_1:77067164-77067183 | Msa0573780:CDS | 45.0% |
GATACGCTGAAGGAATTGCT+TGG | + | chr4_1:77067227-77067246 | Msa0573780:CDS | 45.0% | |
GAAGGAATTGCTTGGAGATG+AGG | + | chr4_1:77067235-77067254 | Msa0573780:CDS | 45.0% | |
GTCGTTGAGCATGCTAATGA+TGG | + | chr4_1:77067272-77067291 | Msa0573780:CDS | 45.0% | |
GAGCATGCTAATGATGGTTC+AGG | + | chr4_1:77067278-77067297 | Msa0573780:CDS | 45.0% | |
GCTAATGATGGTTCAGGCAT+TGG | + | chr4_1:77067284-77067303 | Msa0573780:CDS | 45.0% | |
!!! | GCACCCGTTATTTTGATTGC+AGG | + | chr4_1:77067540-77067559 | Msa0573780:three_prime_UTR | 45.0% |
!! | ATTAATCAAATTATATTTAT+TGG | + | chr4_1:77066058-77066077 | Msa0573780:intron | 5.0% |
!! | TTGAGTGATGGGTAAGGTCG+CGG | + | chr4_1:77063455-77063474 | Msa0573780:exon | 50.0% |
!! | CATGCTGGTCTTGCATCTGA+AGG | + | chr4_1:77063660-77063679 | Msa0573780:CDS | 50.0% |
TAGTGACTGACTGACCCAGT+AGG | - | chr4_1:77063729-77063748 | None:intergenic | 50.0% | |
GAACCGGTCATCAATTGAGG+AGG | - | chr4_1:77064685-77064704 | None:intergenic | 50.0% | |
! | CACGCTTACCTCTGAAGAAC+CGG | - | chr4_1:77064701-77064720 | None:intergenic | 50.0% |
CTTCAGAGGTAAGCGTGTTC+TGG | + | chr4_1:77064704-77064723 | Msa0573780:intron | 50.0% | |
GGTGGAGGATGAAAACCTTC+AGG | - | chr4_1:77064851-77064870 | None:intergenic | 50.0% | |
! | GAAGGTTTTCATCCTCCACC+TGG | + | chr4_1:77064851-77064870 | Msa0573780:CDS | 50.0% |
AGTTCTCTTTGTCTGCCAGG+TGG | - | chr4_1:77064869-77064888 | None:intergenic | 50.0% | |
CCTGGCAGACAAAGAGAACT+CGG | + | chr4_1:77064869-77064888 | Msa0573780:CDS | 50.0% | |
GGTCTCTATCGCTTGTAGGT+TGG | + | chr4_1:77065397-77065416 | Msa0573780:intron | 50.0% | |
! | CTTGTAGGTTGGCGAAGATG+TGG | + | chr4_1:77065408-77065427 | Msa0573780:intron | 50.0% |
! | TAGGTTGGCGAAGATGTGGT+GGG | + | chr4_1:77065412-77065431 | Msa0573780:intron | 50.0% |
GGGAGAACTAACCAAGTCCT+TGG | + | chr4_1:77065432-77065451 | Msa0573780:CDS | 50.0% | |
CTGCTGTGATTCTCGGTACT+GGG | + | chr4_1:77065741-77065760 | Msa0573780:CDS | 50.0% | |
!! | GGCATAAGGCCATGCCATTT+TGG | - | chr4_1:77065803-77065822 | None:intergenic | 50.0% |
!! | GAAGGATGGTGGAAGGATCA+AGG | - | chr4_1:77066112-77066131 | None:intergenic | 50.0% |
! | GCTTTCTGGCATGTACTTGG+GGG | + | chr4_1:77066150-77066169 | Msa0573780:CDS | 50.0% |
TGGTGCATGGAAGACATGTC+AGG | - | chr4_1:77066823-77066842 | None:intergenic | 50.0% | |
!! | TCAGATCTGGTGTTGTGTCG+TGG | - | chr4_1:77066843-77066862 | None:intergenic | 50.0% |
CCAAAATACCACCAGCAGCA+AGG | - | chr4_1:77067091-77067110 | None:intergenic | 50.0% | |
! | CCTTGCTGCTGGTGGTATTT+TGG | + | chr4_1:77067088-77067107 | Msa0573780:CDS | 50.0% |
GGAAGAGACACAGTTAAGGG+TGG | + | chr4_1:77067128-77067147 | Msa0573780:CDS | 50.0% | |
TTGCTTGGAGGATACGCTGA+AGG | + | chr4_1:77067217-77067236 | Msa0573780:CDS | 50.0% | |
CAGGCTACATTCCGCAAAAC+AGG | - | chr4_1:77067628-77067647 | None:intergenic | 50.0% | |
GAGAAAGTGGACACGTAGCG+TGG | + | chr4_1:77063554-77063573 | Msa0573780:CDS | 55.0% | |
!! | GCTGGTCTTGCATCTGAAGG+TGG | + | chr4_1:77063663-77063682 | Msa0573780:CDS | 55.0% |
TCTCTTTGTCTGCCAGGTGG+AGG | - | chr4_1:77064866-77064885 | None:intergenic | 55.0% | |
CCGAGTTCTCTTTGTCTGCC+AGG | - | chr4_1:77064872-77064891 | None:intergenic | 55.0% | |
! | GTAGGTTGGCGAAGATGTGG+TGG | + | chr4_1:77065411-77065430 | Msa0573780:intron | 55.0% |
GAGCTGCAACACGCATATCC+AGG | - | chr4_1:77065468-77065487 | None:intergenic | 55.0% | |
GCTGCTGTGATTCTCGGTAC+TGG | + | chr4_1:77065740-77065759 | Msa0573780:CDS | 55.0% | |
GAGGCAGGTCATGACTAACC+CGG | + | chr4_1:77065901-77065920 | Msa0573780:intron | 55.0% | |
!! | TGGTGTTGTGTCGTGGTGCA+TGG | - | chr4_1:77066836-77066855 | None:intergenic | 55.0% |
TGTGACATTGTCGCCAGTCG+CGG | + | chr4_1:77067059-77067078 | Msa0573780:CDS | 55.0% | |
!! | ATAACGGGTGCCCCTGTTAC+CGG | - | chr4_1:77067531-77067550 | None:intergenic | 55.0% |
!! | AGTGATGGGTAAGGTCGCGG+TGG | + | chr4_1:77063458-77063477 | Msa0573780:exon | 60.0% |
!! | GTGATGGGTAAGGTCGCGGT+GGG | + | chr4_1:77063459-77063478 | Msa0573780:exon | 60.0% |
GGGCAGACCATGTCTGCTGT+GGG | + | chr4_1:77067493-77067512 | Msa0573780:three_prime_UTR | 60.0% | |
GGCAGACCATGTCTGCTGTG+GGG | + | chr4_1:77067494-77067513 | Msa0573780:three_prime_UTR | 60.0% | |
GCAGACCATGTCTGCTGTGG+GGG | + | chr4_1:77067495-77067514 | Msa0573780:three_prime_UTR | 60.0% | |
GTGCTCCTTGGCCGGTAACA+GGG | + | chr4_1:77067517-77067536 | Msa0573780:three_prime_UTR | 60.0% | |
TGCTCCTTGGCCGGTAACAG+GGG | + | chr4_1:77067518-77067537 | Msa0573780:three_prime_UTR | 60.0% | |
TAAGGTCGCGGTGGGAGCTG+CGG | + | chr4_1:77063467-77063486 | Msa0573780:CDS | 65.0% | |
AAGAGCCGCCGCGGCACAAA+CGG | - | chr4_1:77063508-77063527 | None:intergenic | 65.0% | |
CGGGCAGACCATGTCTGCTG+TGG | + | chr4_1:77067492-77067511 | Msa0573780:three_prime_UTR | 65.0% | |
GAGCACCCCCACAGCAGACA+TGG | - | chr4_1:77067503-77067522 | None:intergenic | 65.0% | |
!! | TCTGCTGTGGGGGTGCTCCT+TGG | + | chr4_1:77067505-77067524 | Msa0573780:three_prime_UTR | 65.0% |
GGTGCTCCTTGGCCGGTAAC+AGG | + | chr4_1:77067516-77067535 | Msa0573780:three_prime_UTR | 65.0% | |
TTGTGCCGCGGCGGCTCTTG+TGG | + | chr4_1:77063509-77063528 | Msa0573780:CDS | 70.0% | |
AGCAAGGCGTGCACCGCGAC+TGG | - | chr4_1:77067075-77067094 | None:intergenic | 70.0% | |
GGTGCACGCCTTGCTGCTGG+TGG | + | chr4_1:77067080-77067099 | Msa0573780:CDS | 70.0% | |
!! | CTGTGGGGGTGCTCCTTGGC+CGG | + | chr4_1:77067509-77067528 | Msa0573780:three_prime_UTR | 70.0% |
GGTGCCCCTGTTACCGGCCA+AGG | - | chr4_1:77067525-77067544 | None:intergenic | 70.0% | |
TGCCGCCGCCGTTTGTGCCG+CGG | + | chr4_1:77063497-77063516 | Msa0573780:CDS | 75.0% | |
AGCCGCCGCGGCACAAACGG+CGG | - | chr4_1:77063505-77063524 | None:intergenic | 75.0% | |
CGCGGTGCACGCCTTGCTGC+TGG | + | chr4_1:77067077-77067096 | Msa0573780:CDS | 75.0% | |
! | CGCCGCGGCACAAACGGCGG+CGG | - | chr4_1:77063502-77063521 | None:intergenic | 80.0% |
! | CGCCGCCGTTTGTGCCGCGG+CGG | + | chr4_1:77063500-77063519 | Msa0573780:CDS | 80.0% |
! | CCGCGCCACAAGAGCCGCCG+CGG | - | chr4_1:77063517-77063536 | None:intergenic | 80.0% |
! | CCGCGGCGGCTCTTGTGGCG+CGG | + | chr4_1:77063514-77063533 | Msa0573780:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 77063173 | 77067947 | 77063173 | ID=Msa0573780;Name=Msa0573780 |
chr4_1 | mRNA | 77063173 | 77067947 | 77063173 | ID=Msa0573780-mRNA-1;Parent=Msa0573780;Name=Msa0573780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=267|1|1|1|0.88|0.8|10|583|499 |
chr4_1 | exon | 77063173 | 77063252 | 77063173 | ID=Msa0573780-mRNA-1:exon:27051;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77063275 | 77063733 | 77063275 | ID=Msa0573780-mRNA-1:exon:27052;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77064561 | 77064711 | 77064561 | ID=Msa0573780-mRNA-1:exon:27053;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77064797 | 77064979 | 77064797 | ID=Msa0573780-mRNA-1:exon:27054;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77065415 | 77065489 | 77065415 | ID=Msa0573780-mRNA-1:exon:27055;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77065683 | 77065838 | 77065683 | ID=Msa0573780-mRNA-1:exon:27056;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77065950 | 77066048 | 77065950 | ID=Msa0573780-mRNA-1:exon:27057;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77066136 | 77066266 | 77066136 | ID=Msa0573780-mRNA-1:exon:27058;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77066816 | 77066897 | 77066816 | ID=Msa0573780-mRNA-1:exon:27059;Parent=Msa0573780-mRNA-1 |
chr4_1 | exon | 77067014 | 77067947 | 77067014 | ID=Msa0573780-mRNA-1:exon:27060;Parent=Msa0573780-mRNA-1 |
chr4_1 | five_prime_UTR | 77063173 | 77063252 | 77063173 | ID=Msa0573780-mRNA-1:five_prime_utr;Parent=Msa0573780-mRNA-1 |
chr4_1 | five_prime_UTR | 77063275 | 77063461 | 77063275 | ID=Msa0573780-mRNA-1:five_prime_utr;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77063462 | 77063733 | 77063462 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77064561 | 77064711 | 77064561 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77064797 | 77064979 | 77064797 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77065415 | 77065489 | 77065415 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77065683 | 77065838 | 77065683 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77065950 | 77066048 | 77065950 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77066136 | 77066266 | 77066136 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77066816 | 77066897 | 77066816 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | CDS | 77067014 | 77067364 | 77067014 | ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1 |
chr4_1 | three_prime_UTR | 77067365 | 77067947 | 77067365 | ID=Msa0573780-mRNA-1:three_prime_utr;Parent=Msa0573780-mRNA-1 |
Gene Sequence |
Protein sequence |