AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0573780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0573780 MtrunA17_Chr8g0389821 98.793 497 6 0 1 497 1 497 0.0 1003
Msa0573780 MtrunA17_Chr6g0487071 78.280 465 101 0 33 497 31 495 0.0 762
Msa0573780 MtrunA17_Chr8g0340741 72.819 493 133 1 1 493 1 492 0.0 736
Msa0573780 MtrunA17_Chr5g0396421 57.447 470 188 5 30 490 30 496 0.0 521
Msa0573780 MtrunA17_Chr1g0156571 57.395 453 191 2 40 492 42 492 0.0 520
Msa0573780 MtrunA17_Chr4g0054541 57.595 158 65 1 228 385 5 160 3.48e-57 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0573780 AT4G29130.1 76.673 493 115 0 1 493 1 493 0.0 761
Msa0573780 AT2G19860.1 74.900 498 125 0 1 498 1 498 0.0 757
Msa0573780 AT2G19860.2 74.807 389 98 0 110 498 1 389 0.0 611
Msa0573780 AT1G50460.1 53.700 473 206 4 26 488 26 495 3.46e-176 504
Msa0573780 AT3G20040.1 52.024 494 229 3 1 488 1 492 3.57e-167 482
Msa0573780 AT1G47840.1 52.735 457 212 4 37 492 40 493 6.65e-165 476
Msa0573780 AT1G50460.3 51.724 406 183 4 93 488 17 419 5.76e-141 412
Msa0573780 AT1G50460.2 56.495 331 142 2 26 356 26 354 5.25e-130 382
Msa0573780 AT4G37840.1 45.416 469 244 5 22 487 23 482 5.60e-126 376
Msa0573780 AT1G47840.2 56.075 321 138 3 37 356 40 358 9.63e-119 354
Msa0573780 AT1G47845.1 45.294 170 80 4 255 423 26 183 7.89e-39 140

Find 163 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCTGCTGGTGGTATTT+TGG 0.099944 4_1:+77067088 Msa0573780:CDS
AGCTTCTCACTCTCAGTATT+TGG 0.121428 4_1:+77067322 Msa0573780:CDS
CTTACCATATTTCCTGATTT+TGG 0.126779 4_1:-77065821 None:intergenic
GGTGCTCCTTGGCCGGTAAC+AGG 0.180159 4_1:+77067516 Msa0573780:three_prime_UTR
CATTAACTTCACACACAAAA+TGG 0.219310 4_1:-77067940 None:intergenic
AGCTACTATGCCTTAGTTAT+TGG 0.231214 4_1:+77067449 Msa0573780:three_prime_UTR
GGCATAAGGCCATGCCATTT+TGG 0.231670 4_1:-77065800 None:intergenic
TCTTGATCATATTCGGTTAA+AGG 0.239859 4_1:-77065992 None:intergenic
GTTATTGCCAAGGTAATTAA+AGG 0.248601 4_1:+77067366 Msa0573780:three_prime_UTR
TGGATTCAATTAAATTGTTT+TGG 0.248940 4_1:+77067870 Msa0573780:three_prime_UTR
GTGGCATACCTAAGTATAAA+AGG 0.291655 4_1:-77066253 None:intergenic
CTTCCAACCTCTTTCAGATC+TGG 0.295103 4_1:-77066853 None:intergenic
TATGCCAAAATCAGGAAATA+TGG 0.303610 4_1:+77065817 Msa0573780:CDS
CGTGTCCTTCGTGTACATTT+AGG 0.310233 4_1:+77064610 Msa0573780:CDS
AAGCAAATTGAAGGATATAT+TGG 0.315046 4_1:+77066873 Msa0573780:CDS
ATCAAGATCTTGATCATATT+CGG 0.322885 4_1:-77065999 None:intergenic
TGTCTCTTCCTAGTTTCTTA+AGG 0.338439 4_1:-77067115 None:intergenic
GCAATTGAGGTTTGCTTCAC+AGG 0.339001 4_1:-77064908 None:intergenic
CGCGGTGCACGCCTTGCTGC+TGG 0.361551 4_1:+77067077 Msa0573780:CDS
GCTTCTCACTCTCAGTATTT+GGG 0.370715 4_1:+77067323 Msa0573780:CDS
ATAACGGGTGCCCCTGTTAC+CGG 0.370968 4_1:-77067528 None:intergenic
AGCAAGGCGTGCACCGCGAC+TGG 0.377407 4_1:-77067072 None:intergenic
TAGATCTGATTCTGTGGGAT+TGG 0.378933 4_1:-77063194 None:intergenic
TATGTTGATAATCTTCCTAC+TGG 0.383423 4_1:+77063711 Msa0573780:CDS
ATTGCTTTCTGGCATGTACT+TGG 0.384273 4_1:+77066147 Msa0573780:CDS
CGCCGCGGCACAAACGGCGG+CGG 0.385038 4_1:-77063499 None:intergenic
GCTGCTGTGATTCTCGGTAC+TGG 0.385075 4_1:+77065740 Msa0573780:CDS
TGACAGTGCAGTTAGGAGTT+AGG 0.389672 4_1:-77063291 None:intergenic
CACTAAATTCAGAGTTTGCT+TGG 0.390939 4_1:+77067202 Msa0573780:CDS
TCTGCTATTGTTGTTAGTAC+TGG 0.391365 4_1:+77067739 Msa0573780:three_prime_UTR
AAGAGCCGCCGCGGCACAAA+CGG 0.391798 4_1:-77063505 None:intergenic
ACGCGCATGCTATTCCAAAA+TGG 0.394976 4_1:+77065786 Msa0573780:CDS
AAGCAAACCTCAATTGCATC+TGG 0.396002 4_1:+77064914 Msa0573780:CDS
AATAAAGTTTCCGACTTTGT+TGG 0.396209 4_1:+77063424 Msa0573780:five_prime_UTR
GTGCTCCTTGGCCGGTAACA+GGG 0.398511 4_1:+77067517 Msa0573780:three_prime_UTR
AGATCTGATTCTGTGGGATT+GGG 0.401230 4_1:-77063193 None:intergenic
CAGGCTACATTCCGCAAAAC+AGG 0.408393 4_1:-77067625 None:intergenic
TTGTTGTGTGATTAACTAAA+CGG 0.409138 4_1:+77063158 None:intergenic
ATCATAATTACCTGTTCTCC+AGG 0.409907 4_1:-77066037 None:intergenic
GTCATTGCTGCTGTGATTCT+CGG 0.415176 4_1:+77065734 Msa0573780:CDS
TGCCGCCGCCGTTTGTGCCG+CGG 0.424501 4_1:+77063497 Msa0573780:CDS
CACGCTTACCTCTGAAGAAC+CGG 0.425167 4_1:-77064698 None:intergenic
ATTTATTTATAGTTGAAAAC+AGG 0.430184 4_1:-77067644 None:intergenic
GTAGGTTATAAACATGGAAT+GGG 0.432293 4_1:+77065946 Msa0573780:intron
CTCTATTATGCTCTAGATCT+TGG 0.434188 4_1:+77064574 Msa0573780:CDS
GGTGGAGGATGAAAACCTTC+AGG 0.434285 4_1:-77064848 None:intergenic
TTGAAACTTCATCAAACTCT+TGG 0.434603 4_1:-77064657 None:intergenic
ATGTAGGTTAATGATACAAT+TGG 0.441510 4_1:+77065677 Msa0573780:intron
TTATACAGAGATGCTCTACT+TGG 0.441914 4_1:+77067850 Msa0573780:three_prime_UTR
GCTAATGATGGTTCAGGCAT+TGG 0.443734 4_1:+77067284 Msa0573780:CDS
ACTAGGAAGAGACACAGTTA+AGG 0.444325 4_1:+77067124 Msa0573780:CDS
CATGGCCTTATGCCAAAATC+AGG 0.445114 4_1:+77065809 Msa0573780:CDS
GAGCATGCTAATGATGGTTC+AGG 0.445261 4_1:+77067278 Msa0573780:CDS
CCGAGTTCTCTTTGTCTGCC+AGG 0.447341 4_1:-77064869 None:intergenic
GATACAATTGGAACATTGGC+TGG 0.447474 4_1:+77065689 Msa0573780:CDS
AAGCTTAAACCCTGGAGAAC+AGG 0.452669 4_1:+77066027 Msa0573780:CDS
TTGTGCCGCGGCGGCTCTTG+TGG 0.454818 4_1:+77063509 Msa0573780:CDS
TTGCTTTCTGGCATGTACTT+GGG 0.455566 4_1:+77066148 Msa0573780:CDS
TGCTTTCTGGCATGTACTTG+GGG 0.456526 4_1:+77066149 Msa0573780:CDS
ACGGAGAGCTTTGTTGAAGA+TGG 0.457787 4_1:+77066180 Msa0573780:CDS
AACCCTGCAATCAAAATAAC+GGG 0.461447 4_1:-77067543 None:intergenic
TCTCTTTGTCTGCCAGGTGG+AGG 0.463034 4_1:-77064863 None:intergenic
GAAAAGTGTGAGACACCAAT+TGG 0.463065 4_1:+77063597 Msa0573780:CDS
AAGAAAATGACAGTGCAGTT+AGG 0.464986 4_1:-77063298 None:intergenic
TTGGGAATCCTTAAGAAACT+AGG 0.468333 4_1:+77067107 Msa0573780:CDS
TGTAGGTTATAAACATGGAA+TGG 0.471322 4_1:+77065945 Msa0573780:intron
GGTGCCCCTGTTACCGGCCA+AGG 0.473202 4_1:-77067522 None:intergenic
TAGACAGTTGGCTGATGCTA+TGG 0.474066 4_1:+77063626 Msa0573780:CDS
TTACATGCCTTTAATTACCT+TGG 0.477218 4_1:-77067373 None:intergenic
CTGCTGTGATTCTCGGTACT+GGG 0.480970 4_1:+77065741 Msa0573780:CDS
TAGAGTCCCAGATGCAATTG+AGG 0.487255 4_1:-77064921 None:intergenic
GACTCTAATAAAGTGGACTA+AGG 0.488261 4_1:+77064937 Msa0573780:CDS
GGGAGAACTAACCAAGTCCT+TGG 0.493228 4_1:+77065432 Msa0573780:CDS
AACTGTCTAAGCTTTCCAAT+TGG 0.495017 4_1:-77063612 None:intergenic
CGGGCAGACCATGTCTGCTG+TGG 0.495531 4_1:+77067492 Msa0573780:three_prime_UTR
AAACCCTGCAATCAAAATAA+CGG 0.500702 4_1:-77067544 None:intergenic
TGGTGTTGTGTCGTGGTGCA+TGG 0.502741 4_1:-77066833 None:intergenic
GTATGATAAGTTCGAGAAAG+TGG 0.505548 4_1:+77063541 Msa0573780:CDS
AGCCGCCGCGGCACAAACGG+CGG 0.505594 4_1:-77063502 None:intergenic
CAATTGAGGTTTGCTTCACA+GGG 0.506739 4_1:-77064907 None:intergenic
TCACATTATTTGCAGGGATG+AGG 0.508861 4_1:+77064546 Msa0573780:intron
CCGCGGCGGCTCTTGTGGCG+CGG 0.509659 4_1:+77063514 Msa0573780:CDS
ATCCCTCCTCAATTGATGAC+CGG 0.509765 4_1:+77064679 Msa0573780:CDS
GGGCAGACCATGTCTGCTGT+GGG 0.512585 4_1:+77067493 Msa0573780:three_prime_UTR
CGCCGCCGTTTGTGCCGCGG+CGG 0.515327 4_1:+77063500 Msa0573780:CDS
GTCTATAGGACCAATAACTA+AGG 0.519380 4_1:-77067459 None:intergenic
TAATGATACAATTGGAACAT+TGG 0.520504 4_1:+77065685 Msa0573780:CDS
GAGCTGCAACACGCATATCC+AGG 0.521304 4_1:-77065465 None:intergenic
TGCTCCTTGGCCGGTAACAG+GGG 0.522076 4_1:+77067518 Msa0573780:three_prime_UTR
CTAGGAAGAGACACAGTTAA+GGG 0.522099 4_1:+77067125 Msa0573780:CDS
TGGAGGCAGATTCTACAATC+AGG 0.523047 4_1:+77065709 Msa0573780:CDS
TCAGTATTTGGGAGTAGAAG+AGG 0.523856 4_1:+77067334 Msa0573780:CDS
CATGCTGGTCTTGCATCTGA+AGG 0.526173 4_1:+77063660 Msa0573780:CDS
TTGGATTAAGATTTGAGTGA+TGG 0.527581 4_1:+77063443 Msa0573780:exon
CCCGTTAGTTAAAAGTCTAT+AGG 0.527743 4_1:-77067473 None:intergenic
GTCGTTGAGCATGCTAATGA+TGG 0.530025 4_1:+77067272 Msa0573780:CDS
GATACGCTGAAGGAATTGCT+TGG 0.531985 4_1:+77067227 Msa0573780:CDS
CATTTAGGTGGAAAAGAGAA+AGG 0.537341 4_1:+77064625 Msa0573780:CDS
AGAGGTTGGAAGCAAATTGA+AGG 0.538515 4_1:+77066864 Msa0573780:CDS
TAAGGTCGCGGTGGGAGCTG+CGG 0.541422 4_1:+77063467 Msa0573780:CDS
CATCTGGGACTCTAATAAAG+TGG 0.541566 4_1:+77064930 Msa0573780:CDS
ATGGATGTTGAGATGCATGC+TGG 0.543124 4_1:+77063645 Msa0573780:CDS
AAGTTTAGATCTGATTCTGT+GGG 0.544444 4_1:-77063199 None:intergenic
TAAGATTTGAGTGATGGGTA+AGG 0.546558 4_1:+77063449 Msa0573780:exon
AAAGTTTAGATCTGATTCTG+TGG 0.547536 4_1:-77063200 None:intergenic
GTCCTTCGTGTACATTTAGG+TGG 0.550016 4_1:+77064613 Msa0573780:CDS
GATGCTGAAAGCTTAAACCC+TGG 0.551347 4_1:+77066019 Msa0573780:CDS
GAAGGAATTGCTTGGAGATG+AGG 0.552447 4_1:+77067235 Msa0573780:CDS
TAAATTCAGAGTTTGCTTGG+AGG 0.552574 4_1:+77067205 Msa0573780:CDS
GCAGACCATGTCTGCTGTGG+GGG 0.553349 4_1:+77067495 Msa0573780:three_prime_UTR
GAAGAACCGGTCATCAATTG+AGG 0.558178 4_1:-77064685 None:intergenic
TATTATGCTCTAGATCTTGG+TGG 0.558418 4_1:+77064577 Msa0573780:CDS
CAAATTGAAGGATATATTGG+AGG 0.558923 4_1:+77066876 Msa0573780:CDS
AATTGGAAAGCTTAGACAGT+TGG 0.560728 4_1:+77063614 Msa0573780:CDS
GCAAAAGTCAGTGATAGCAT+TGG 0.560739 4_1:+77067157 Msa0573780:CDS
ACACCAGATCTGAAAGAGGT+TGG 0.565677 4_1:+77066850 Msa0573780:CDS
GCTGGTCTTGCATCTGAAGG+TGG 0.566582 4_1:+77063663 Msa0573780:CDS
CACAACACCAGATCTGAAAG+AGG 0.571670 4_1:+77066846 Msa0573780:CDS
TGGATTAAGATTTGAGTGAT+GGG 0.577136 4_1:+77063444 Msa0573780:exon
AGCAAACCTCAATTGCATCT+GGG 0.578513 4_1:+77064915 Msa0573780:CDS
TTTGTTGAGTCAGAACCTGA+AGG 0.578841 4_1:+77064833 Msa0573780:CDS
TTGAGTGATGGGTAAGGTCG+CGG 0.581116 4_1:+77063455 Msa0573780:exon
TGTGACATTGTCGCCAGTCG+CGG 0.581524 4_1:+77067059 Msa0573780:CDS
GAGTTCTAATGTTATTGCCA+AGG 0.583639 4_1:+77067356 Msa0573780:exon
ACTCTAATAAAGTGGACTAA+GGG 0.584848 4_1:+77064938 Msa0573780:CDS
ATTATTTGCAGGGATGAGGA+AGG 0.587877 4_1:+77064550 Msa0573780:intron
AAATCTTAATCCAACAAAGT+CGG 0.588607 4_1:-77063434 None:intergenic
ACTTTCTCGAACTTATCATA+CGG 0.588844 4_1:-77063539 None:intergenic
GGTGCACGCCTTGCTGCTGG+TGG 0.590154 4_1:+77067080 Msa0573780:CDS
ATTGATGACCGGTTCTTCAG+AGG 0.592464 4_1:+77064690 Msa0573780:CDS
GTAGGTTGGCGAAGATGTGG+TGG 0.593075 4_1:+77065411 Msa0573780:intron
CCTGGCAGACAAAGAGAACT+CGG 0.593630 4_1:+77064869 Msa0573780:CDS
GAGAAAGTGGACACGTAGCG+TGG 0.594090 4_1:+77063554 Msa0573780:CDS
CCAAAATACCACCAGCAGCA+AGG 0.595952 4_1:-77067088 None:intergenic
TTAAAGGAAGATGTGATGAT+CGG 0.599131 4_1:-77065976 None:intergenic
CCGCGCCACAAGAGCCGCCG+CGG 0.599159 4_1:-77063514 None:intergenic
GGCAGACCATGTCTGCTGTG+GGG 0.600343 4_1:+77067494 Msa0573780:three_prime_UTR
TTGCTTGGAGGATACGCTGA+AGG 0.604070 4_1:+77067217 Msa0573780:CDS
CATGCTATTCCAAAATGGCA+TGG 0.605628 4_1:+77065791 Msa0573780:CDS
AAGTCAGTGATAGCATTGGA+TGG 0.608938 4_1:+77067161 Msa0573780:CDS
TCATAATTACCTGTTCTCCA+GGG 0.609665 4_1:-77066036 None:intergenic
GAACCGGTCATCAATTGAGG+AGG 0.615013 4_1:-77064682 None:intergenic
TCAGATCTGGTGTTGTGTCG+TGG 0.616704 4_1:-77066840 None:intergenic
TGAATGAGAGAAACAAAGTG+AGG 0.616996 4_1:-77063395 None:intergenic
AGTGATGGGTAAGGTCGCGG+TGG 0.620275 4_1:+77063458 Msa0573780:exon
TTTGTTGAAGATGGCCGAAG+AGG 0.622326 4_1:+77066189 Msa0573780:CDS
AGTTCTCTTTGTCTGCCAGG+TGG 0.622694 4_1:-77064866 None:intergenic
TGGTGCATGGAAGACATGTC+AGG 0.624431 4_1:-77066820 None:intergenic
GCTTTCTGGCATGTACTTGG+GGG 0.629925 4_1:+77066150 Msa0573780:CDS
CTTGTAGGTTGGCGAAGATG+TGG 0.639851 4_1:+77065408 Msa0573780:intron
GTGATGGGTAAGGTCGCGGT+GGG 0.648560 4_1:+77063459 Msa0573780:exon
CTAAATGTACACGAAGGACA+CGG 0.650048 4_1:-77064609 None:intergenic
ATGTTGATAATCTTCCTACT+GGG 0.651766 4_1:+77063712 Msa0573780:CDS
GGAAGAGACACAGTTAAGGG+TGG 0.653081 4_1:+77067128 Msa0573780:CDS
AATACTGTAGGTTATAAACA+TGG 0.656730 4_1:+77065940 Msa0573780:intron
AACCGGTCATCAATTGAGGA+GGG 0.663823 4_1:-77064681 None:intergenic
ATTAGCATGCTCAACGACAA+CGG 0.666183 4_1:-77067267 None:intergenic
TAGGTTGGCGAAGATGTGGT+GGG 0.672008 4_1:+77065412 Msa0573780:intron
TAGTGACTGACTGACCCAGT+AGG 0.676585 4_1:-77063726 None:intergenic
TCAGTGATAGCATTGGATGG+AGG 0.680482 4_1:+77067164 Msa0573780:CDS
TAGGTTATAAACATGGAATG+GGG 0.681790 4_1:+77065947 Msa0573780:intron
ACAATTGGAACATTGGCTGG+AGG 0.694331 4_1:+77065692 Msa0573780:CDS
TTCCACCTAAATGTACACGA+AGG 0.716522 4_1:-77064615 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTGTAAAAGAAAT+AGG - chr4_1:77065123-77065142 None:intergenic 10.0%
!!! TCTTTTACAATTTTTATAAA+CGG + chr4_1:77065126-77065145 Msa0573780:intron 10.0%
!!! AAACTTTTGATTTAAAAAAA+GGG - chr4_1:77067793-77067812 None:intergenic 10.0%
!!! ATTTTGACATATTTGAATAT+TGG + chr4_1:77064063-77064082 Msa0573780:intron 15.0%
!! AAGAATTTACATGATTATAA+TGG + chr4_1:77064345-77064364 Msa0573780:intron 15.0%
!! AGAATTTACATGATTATAAT+GGG + chr4_1:77064346-77064365 Msa0573780:intron 15.0%
!! TAGGAAAATAAAAACAAAAA+AGG - chr4_1:77066537-77066556 None:intergenic 15.0%
!!! CTTTTAACATCTTTTATATT+AGG + chr4_1:77066794-77066813 Msa0573780:intron 15.0%
!! ATTTATTTATAGTTGAAAAC+AGG - chr4_1:77067647-77067666 None:intergenic 15.0%
!!! TTTTCAACTATAAATAAATC+AGG + chr4_1:77067648-77067667 Msa0573780:three_prime_UTR 15.0%
!!! GAAACTTTTGATTTAAAAAA+AGG - chr4_1:77067794-77067813 None:intergenic 15.0%
!!! TTATTCTTATTTTTTGTGCA+TGG - chr4_1:77063326-77063345 None:intergenic 20.0%
!!! ACATTTTTTTATTCGACTTT+TGG + chr4_1:77064007-77064026 Msa0573780:intron 20.0%
!! AAAATCATAATCAATTCTGT+AGG - chr4_1:77064114-77064133 None:intergenic 20.0%
!! TACATCATGTATAAATAAGT+GGG - chr4_1:77064200-77064219 None:intergenic 20.0%
!! ATACATCATGTATAAATAAG+TGG - chr4_1:77064201-77064220 None:intergenic 20.0%
!! AGTCAATGTAAAAAGAATTA+CGG - chr4_1:77064981-77065000 None:intergenic 20.0%
!!! TAATGTTTTTAGAAGTAAAC+AGG + chr4_1:77065319-77065338 Msa0573780:intron 20.0%
!!! TTTTTAGTTTTAGCAATTCT+TGG + chr4_1:77065609-77065628 Msa0573780:intron 20.0%
!! TACAGTATTTAGAAGTAATT+TGG - chr4_1:77065929-77065948 None:intergenic 20.0%
!! AAATTACTTCTAAATACTGT+AGG + chr4_1:77065928-77065947 Msa0573780:intron 20.0%
!!! TAAAAGGAATTTTCAACTTA+GGG - chr4_1:77066240-77066259 None:intergenic 20.0%
!!! ATAAAAGGAATTTTCAACTT+AGG - chr4_1:77066241-77066260 None:intergenic 20.0%
!!! TGAAAATTCCTTTTATACTT+AGG + chr4_1:77066245-77066264 Msa0573780:CDS 20.0%
!! ATGCTAATGATTCAAAAAAT+AGG - chr4_1:77066556-77066575 None:intergenic 20.0%
!!! CATTACATTTTTATCCAAAT+TGG + chr4_1:77066573-77066592 Msa0573780:intron 20.0%
!! AGAAAGAATTGAAAATATCT+AGG - chr4_1:77066635-77066654 None:intergenic 20.0%
!! CAAAACAAAAAATATCAAAC+TGG - chr4_1:77067401-77067420 None:intergenic 20.0%
!! AAAAGGGAAAAATATAAAAG+AGG - chr4_1:77067777-77067796 None:intergenic 20.0%
!!! TGCACATGTTTTAAAAATAA+AGG - chr4_1:77067816-77067835 None:intergenic 20.0%
!!! TGGATTCAATTAAATTGTTT+TGG + chr4_1:77067870-77067889 Msa0573780:three_prime_UTR 20.0%
! AAATCTTAATCCAACAAAGT+CGG - chr4_1:77063437-77063456 None:intergenic 25.0%
!! AAAGAAAAGTTGTTGATTAG+AGG + chr4_1:77063968-77063987 Msa0573780:intron 25.0%
!! ATTTACATGATTATAATGGG+AGG + chr4_1:77064349-77064368 Msa0573780:intron 25.0%
! AACACAAAATCAAATGCTTT+CGG - chr4_1:77064459-77064478 None:intergenic 25.0%
! CAATGTGAAAAATTACTCAA+AGG - chr4_1:77064526-77064545 None:intergenic 25.0%
!!! TTGATTTTGTTGTTTGTTAC+AGG + chr4_1:77064775-77064794 Msa0573780:intron 25.0%
!!! TGATTTTGTTGTTTGTTACA+GGG + chr4_1:77064776-77064795 Msa0573780:intron 25.0%
! TAAATAACAACACGAAACAA+TGG - chr4_1:77065031-77065050 None:intergenic 25.0%
! AGAAATAGGAAGAGAAATAT+TGG - chr4_1:77065109-77065128 None:intergenic 25.0%
! CTGAAAACAAAGAGAAAAAT+GGG - chr4_1:77065345-77065364 None:intergenic 25.0%
! TCTGAAAACAAAGAGAAAAA+TGG - chr4_1:77065346-77065365 None:intergenic 25.0%
! AAATACAGAAATCCTAAAAG+AGG - chr4_1:77065507-77065526 None:intergenic 25.0%
!!! AACAGGTTAGTTTTATTTAG+AGG - chr4_1:77065651-77065670 None:intergenic 25.0%
! ATGTAGGTTAATGATACAAT+TGG + chr4_1:77065677-77065696 Msa0573780:intron 25.0%
! TAATGATACAATTGGAACAT+TGG + chr4_1:77065685-77065704 Msa0573780:CDS 25.0%
! AATACTGTAGGTTATAAACA+TGG + chr4_1:77065940-77065959 Msa0573780:intron 25.0%
! ATCAAGATCTTGATCATATT+CGG - chr4_1:77066002-77066021 None:intergenic 25.0%
! AATTTCTCAAAAATCTGTGA+AGG - chr4_1:77066130-77066149 None:intergenic 25.0%
!!! ATTTTTGAGAAATTGCTTTC+TGG + chr4_1:77066136-77066155 Msa0573780:CDS 25.0%
!! AAAAGGAATTTTCAACTTAG+GGG - chr4_1:77066239-77066258 None:intergenic 25.0%
! AAAAGGAATCATTATTGACA+TGG - chr4_1:77066283-77066302 None:intergenic 25.0%
! ATTCATGCAATTAATAACCA+AGG - chr4_1:77066314-77066333 None:intergenic 25.0%
!! CTTTTACCAAGAATCAATAA+GGG - chr4_1:77066431-77066450 None:intergenic 25.0%
!! CATTTTTATCCAAATTGGTA+TGG + chr4_1:77066578-77066597 Msa0573780:intron 25.0%
! AAGATTTATGTAACTCAACA+GGG - chr4_1:77066733-77066752 None:intergenic 25.0%
! AAGCAAATTGAAGGATATAT+TGG + chr4_1:77066873-77066892 Msa0573780:CDS 25.0%
! ATGAAAGTCATATTTCAACA+TGG - chr4_1:77066919-77066938 None:intergenic 25.0%
! CTTATCCATTTGATAGAAAA+TGG - chr4_1:77066967-77066986 None:intergenic 25.0%
!!! TCCTATAGACTTTTAACTAA+CGG + chr4_1:77067472-77067491 Msa0573780:three_prime_UTR 25.0%
AAGTTTAGATCTGATTCTGT+GGG - chr4_1:77063202-77063221 None:intergenic 30.0%
AAAGTTTAGATCTGATTCTG+TGG - chr4_1:77063203-77063222 None:intergenic 30.0%
AATAAAGTTTCCGACTTTGT+TGG + chr4_1:77063424-77063443 Msa0573780:five_prime_UTR 30.0%
TTGGATTAAGATTTGAGTGA+TGG + chr4_1:77063443-77063462 Msa0573780:exon 30.0%
TGGATTAAGATTTGAGTGAT+GGG + chr4_1:77063444-77063463 Msa0573780:exon 30.0%
ACTTTCTCGAACTTATCATA+CGG - chr4_1:77063542-77063561 None:intergenic 30.0%
!! TATGTTGATAATCTTCCTAC+TGG + chr4_1:77063711-77063730 Msa0573780:CDS 30.0%
!! ATGTTGATAATCTTCCTACT+GGG + chr4_1:77063712-77063731 Msa0573780:CDS 30.0%
!! TCTTTTTCATCTTCGATTTG+TGG + chr4_1:77063765-77063784 Msa0573780:intron 30.0%
TACAATCACAAATCATGGAT+TGG - chr4_1:77063927-77063946 None:intergenic 30.0%
CAGAATACAATCACAAATCA+TGG - chr4_1:77063932-77063951 None:intergenic 30.0%
! CATGATTTGTGATTGTATTC+TGG + chr4_1:77063930-77063949 Msa0573780:intron 30.0%
TTGTGATTGTATTCTGGTAT+TGG + chr4_1:77063936-77063955 Msa0573780:intron 30.0%
!! TTTTATTCGACTTTTGGAGA+TGG + chr4_1:77064013-77064032 Msa0573780:intron 30.0%
ATTCATTTCTGACGAAAAGT+GGG - chr4_1:77064240-77064259 None:intergenic 30.0%
AATTCATTTCTGACGAAAAG+TGG - chr4_1:77064241-77064260 None:intergenic 30.0%
! GATTTTGTGTTGTGAAAGTT+TGG + chr4_1:77064468-77064487 Msa0573780:intron 30.0%
ACATTGTCACATTATTTGCA+GGG + chr4_1:77064540-77064559 Msa0573780:intron 30.0%
TTGAAACTTCATCAAACTCT+TGG - chr4_1:77064660-77064679 None:intergenic 30.0%
!! ACTCTAATAAAGTGGACTAA+GGG + chr4_1:77064938-77064957 Msa0573780:CDS 30.0%
! AGACAATGAAAACAGTGTTT+TGG - chr4_1:77065182-77065201 None:intergenic 30.0%
TCAGAAATTCTCTCATTGAA+TGG + chr4_1:77065361-77065380 Msa0573780:intron 30.0%
AATTTGTCTCTGACTGAATT+TGG + chr4_1:77065560-77065579 Msa0573780:intron 30.0%
!! TTTGGAGTTACAAGGTTTTA+TGG + chr4_1:77065578-77065597 Msa0573780:intron 30.0%
TTAACCTACATAACATCAAC+AGG - chr4_1:77065668-77065687 None:intergenic 30.0%
!! TATTTCCTGATTTTGGCATA+AGG - chr4_1:77065817-77065836 None:intergenic 30.0%
TATGCCAAAATCAGGAAATA+TGG + chr4_1:77065817-77065836 Msa0573780:CDS 30.0%
! CTTACCATATTTCCTGATTT+TGG - chr4_1:77065824-77065843 None:intergenic 30.0%
CAAAATCAGGAAATATGGTA+AGG + chr4_1:77065822-77065841 Msa0573780:intron 30.0%
TGGTAAGGTTATGAGTAATT+AGG + chr4_1:77065837-77065856 Msa0573780:intron 30.0%
ATTTAGAAGTAATTTGGCAC+CGG - chr4_1:77065923-77065942 None:intergenic 30.0%
TGTAGGTTATAAACATGGAA+TGG + chr4_1:77065945-77065964 Msa0573780:intron 30.0%
GTAGGTTATAAACATGGAAT+GGG + chr4_1:77065946-77065965 Msa0573780:intron 30.0%
TAGGTTATAAACATGGAATG+GGG + chr4_1:77065947-77065966 Msa0573780:intron 30.0%
TTAAAGGAAGATGTGATGAT+CGG - chr4_1:77065979-77065998 None:intergenic 30.0%
TCTTGATCATATTCGGTTAA+AGG - chr4_1:77065995-77066014 None:intergenic 30.0%
! AAAGGAATTTTCAACTTAGG+GGG - chr4_1:77066238-77066257 None:intergenic 30.0%
TCATTATTGACATGGTTTAG+TGG - chr4_1:77066275-77066294 None:intergenic 30.0%
! ATTCCTTTTATACTTAGCCT+TGG + chr4_1:77066294-77066313 Msa0573780:intron 30.0%
TAACCAAGGCTAAGTATAAA+AGG - chr4_1:77066300-77066319 None:intergenic 30.0%
CAATAAGGGTGAAAATAAGA+GGG - chr4_1:77066417-77066436 None:intergenic 30.0%
TCAATAAGGGTGAAAATAAG+AGG - chr4_1:77066418-77066437 None:intergenic 30.0%
!!! TTTTCACCCTTATTGATTCT+TGG + chr4_1:77066422-77066441 Msa0573780:intron 30.0%
! GCTTTTACCAAGAATCAATA+AGG - chr4_1:77066432-77066451 None:intergenic 30.0%
! ATTGATTCTTGGTAAAAGCT+TGG + chr4_1:77066433-77066452 Msa0573780:intron 30.0%
AAAGCTTGGATGAATGAAAA+TGG + chr4_1:77066447-77066466 Msa0573780:intron 30.0%
! CAAAAAAGGTATGTTACTAC+TGG - chr4_1:77066523-77066542 None:intergenic 30.0%
! GTATGGAAGTTTTCCTAAAA+TGG + chr4_1:77066595-77066614 Msa0573780:intron 30.0%
GAAGATTTATGTAACTCAAC+AGG - chr4_1:77066734-77066753 None:intergenic 30.0%
CAAATTGAAGGATATATTGG+AGG + chr4_1:77066876-77066895 Msa0573780:CDS 30.0%
ACTATATAGGATGATATGTG+AGG - chr4_1:77066943-77066962 None:intergenic 30.0%
GATAGAAAATGGCACTATAT+AGG - chr4_1:77066956-77066975 None:intergenic 30.0%
!!! TAGTGCCATTTTCTATCAAA+TGG + chr4_1:77066959-77066978 Msa0573780:intron 30.0%
GTATTAGAGATCTGACAAAA+AGG - chr4_1:77067005-77067024 None:intergenic 30.0%
CTAATACATCACTAAAAACG+AGG + chr4_1:77067018-77067037 Msa0573780:CDS 30.0%
GTTATTGCCAAGGTAATTAA+AGG + chr4_1:77067366-77067385 Msa0573780:three_prime_UTR 30.0%
TTACATGCCTTTAATTACCT+TGG - chr4_1:77067376-77067395 None:intergenic 30.0%
!! CCTATAGACTTTTAACTAAC+GGG + chr4_1:77067473-77067492 Msa0573780:three_prime_UTR 30.0%
AAACCCTGCAATCAAAATAA+CGG - chr4_1:77067547-77067566 None:intergenic 30.0%
!! GGTTTGCTTCTTCTATTTTA+TGG + chr4_1:77067562-77067581 Msa0573780:three_prime_UTR 30.0%
AAATGCTGTGAATCAAAAAC+GGG - chr4_1:77067690-77067709 None:intergenic 30.0%
GAAATGCTGTGAATCAAAAA+CGG - chr4_1:77067691-77067710 None:intergenic 30.0%
GGGAAAAATATAAAAGAGGT+TGG - chr4_1:77067773-77067792 None:intergenic 30.0%
!!! GTTTTGGAGAAATGAATGAA+TGG + chr4_1:77067886-77067905 Msa0573780:three_prime_UTR 30.0%
AAGAAAATGACAGTGCAGTT+AGG - chr4_1:77063301-77063320 None:intergenic 35.0%
TGAATGAGAGAAACAAAGTG+AGG - chr4_1:77063398-77063417 None:intergenic 35.0%
!! TAAGATTTGAGTGATGGGTA+AGG + chr4_1:77063449-77063468 Msa0573780:exon 35.0%
GTATGATAAGTTCGAGAAAG+TGG + chr4_1:77063541-77063560 Msa0573780:CDS 35.0%
!! TGGCTATTTTGAAGGAGTTT+GGG + chr4_1:77063574-77063593 Msa0573780:CDS 35.0%
AACTGTCTAAGCTTTCCAAT+TGG - chr4_1:77063615-77063634 None:intergenic 35.0%
AATTGGAAAGCTTAGACAGT+TGG + chr4_1:77063614-77063633 Msa0573780:CDS 35.0%
GAGGCTAAAAACAATTGTAG+AGG - chr4_1:77064162-77064181 None:intergenic 35.0%
! TGGGTTGAACAGTAAATTTG+AGG - chr4_1:77064181-77064200 None:intergenic 35.0%
!! AAGTGGGTTGAATGTATGTT+TGG - chr4_1:77064224-77064243 None:intergenic 35.0%
GATGATTCAGTCACATTGAA+TGG + chr4_1:77064421-77064440 Msa0573780:intron 35.0%
CACATTGTCACATTATTTGC+AGG + chr4_1:77064539-77064558 Msa0573780:intron 35.0%
! CTCTATTATGCTCTAGATCT+TGG + chr4_1:77064574-77064593 Msa0573780:CDS 35.0%
! TATTATGCTCTAGATCTTGG+TGG + chr4_1:77064577-77064596 Msa0573780:CDS 35.0%
CATTTAGGTGGAAAAGAGAA+AGG + chr4_1:77064625-77064644 Msa0573780:CDS 35.0%
!! GACTCTAATAAAGTGGACTA+AGG + chr4_1:77064937-77064956 Msa0573780:CDS 35.0%
GAGAGACTCATTTAAGTATC+TGG - chr4_1:77065075-77065094 None:intergenic 35.0%
GAGTCTTTCATCTCATTGTT+AGG + chr4_1:77065257-77065276 Msa0573780:intron 35.0%
ACCAAGTCCTTGGAAAAAAT+TGG + chr4_1:77065442-77065461 Msa0573780:CDS 35.0%
! TGACTGAATTTGGAGTTACA+AGG + chr4_1:77065570-77065589 Msa0573780:intron 35.0%
CTAACCTGTTGATGTTATGT+AGG + chr4_1:77065661-77065680 Msa0573780:intron 35.0%
TTTAGAAGTAATTTGGCACC+GGG - chr4_1:77065922-77065941 None:intergenic 35.0%
TCATAATTACCTGTTCTCCA+GGG - chr4_1:77066039-77066058 None:intergenic 35.0%
ATCATAATTACCTGTTCTCC+AGG - chr4_1:77066040-77066059 None:intergenic 35.0%
AAGGATGCTACAAATTCACA+TGG - chr4_1:77066093-77066112 None:intergenic 35.0%
TCTCAAAAATCTGTGAAGGA+TGG - chr4_1:77066126-77066145 None:intergenic 35.0%
GTGGCATACCTAAGTATAAA+AGG - chr4_1:77066256-77066275 None:intergenic 35.0%
AACCAAGGCTGATACTAAAA+TGG - chr4_1:77066394-77066413 None:intergenic 35.0%
GGAAAACTTCCATACCAATT+TGG - chr4_1:77066590-77066609 None:intergenic 35.0%
AATAAGGAGTTCTGCTTGTA+TGG - chr4_1:77066679-77066698 None:intergenic 35.0%
AGGGCAAAGGAATGAAAATA+AGG - chr4_1:77066695-77066714 None:intergenic 35.0%
AGGGTAAAACAGGTGATAAA+GGG - chr4_1:77066714-77066733 None:intergenic 35.0%
AAAAACGAGGAAGATTGTTG+TGG + chr4_1:77067031-77067050 Msa0573780:CDS 35.0%
TTGGGAATCCTTAAGAAACT+AGG + chr4_1:77067107-77067126 Msa0573780:CDS 35.0%
TGTCTCTTCCTAGTTTCTTA+AGG - chr4_1:77067118-77067137 None:intergenic 35.0%
! CACTAAATTCAGAGTTTGCT+TGG + chr4_1:77067202-77067221 Msa0573780:CDS 35.0%
! TAAATTCAGAGTTTGCTTGG+AGG + chr4_1:77067205-77067224 Msa0573780:CDS 35.0%
! GAGTTCTAATGTTATTGCCA+AGG + chr4_1:77067356-77067375 Msa0573780:exon 35.0%
AGCTACTATGCCTTAGTTAT+TGG + chr4_1:77067449-77067468 Msa0573780:three_prime_UTR 35.0%
GTCTATAGGACCAATAACTA+AGG - chr4_1:77067462-77067481 None:intergenic 35.0%
CCCGTTAGTTAAAAGTCTAT+AGG - chr4_1:77067476-77067495 None:intergenic 35.0%
AACCCTGCAATCAAAATAAC+GGG - chr4_1:77067546-77067565 None:intergenic 35.0%
! TTTGAGTGTATCCTGTTTTG+CGG + chr4_1:77067614-77067633 Msa0573780:three_prime_UTR 35.0%
! TCTGCTATTGTTGTTAGTAC+TGG + chr4_1:77067739-77067758 Msa0573780:three_prime_UTR 35.0%
TTATACAGAGATGCTCTACT+TGG + chr4_1:77067850-77067869 Msa0573780:three_prime_UTR 35.0%
AGATCTGATTCTGTGGGATT+GGG - chr4_1:77063196-77063215 None:intergenic 40.0%
TAGATCTGATTCTGTGGGAT+TGG - chr4_1:77063197-77063216 None:intergenic 40.0%
!! GTGGCTATTTTGAAGGAGTT+TGG + chr4_1:77063573-77063592 Msa0573780:CDS 40.0%
!! GGCTATTTTGAAGGAGTTTG+GGG + chr4_1:77063575-77063594 Msa0573780:CDS 40.0%
! GAAAAGTGTGAGACACCAAT+TGG + chr4_1:77063597-77063616 Msa0573780:CDS 40.0%
GTGACTGAATCATCAACAAG+TGG - chr4_1:77064415-77064434 None:intergenic 40.0%
TCACATTATTTGCAGGGATG+AGG + chr4_1:77064546-77064565 Msa0573780:intron 40.0%
ATTATTTGCAGGGATGAGGA+AGG + chr4_1:77064550-77064569 Msa0573780:intron 40.0%
CTAAATGTACACGAAGGACA+CGG - chr4_1:77064612-77064631 None:intergenic 40.0%
TTCCACCTAAATGTACACGA+AGG - chr4_1:77064618-77064637 None:intergenic 40.0%
TTTGTTGAGTCAGAACCTGA+AGG + chr4_1:77064833-77064852 Msa0573780:CDS 40.0%
! CAATTGAGGTTTGCTTCACA+GGG - chr4_1:77064910-77064929 None:intergenic 40.0%
AAGCAAACCTCAATTGCATC+TGG + chr4_1:77064914-77064933 Msa0573780:CDS 40.0%
AGCAAACCTCAATTGCATCT+GGG + chr4_1:77064915-77064934 Msa0573780:CDS 40.0%
! CATCTGGGACTCTAATAAAG+TGG + chr4_1:77064930-77064949 Msa0573780:CDS 40.0%
TTGAATGGTCATCTGACAGT+TGG + chr4_1:77065376-77065395 Msa0573780:intron 40.0%
!!! GCCAATTTTTTCCAAGGACT+TGG - chr4_1:77065446-77065465 None:intergenic 40.0%
!!! ATCCAGGCCAATTTTTTCCA+AGG - chr4_1:77065452-77065471 None:intergenic 40.0%
! CAGTCTCATTCTCCTCTTTT+AGG + chr4_1:77065492-77065511 Msa0573780:intron 40.0%
GATACAATTGGAACATTGGC+TGG + chr4_1:77065689-77065708 Msa0573780:CDS 40.0%
CATGCTATTCCAAAATGGCA+TGG + chr4_1:77065791-77065810 Msa0573780:CDS 40.0%
TGTCTTACGATGCTACTAAG+AGG + chr4_1:77065882-77065901 Msa0573780:intron 40.0%
CAAAAATCTGTGAAGGATGG+TGG - chr4_1:77066123-77066142 None:intergenic 40.0%
! ATTGCTTTCTGGCATGTACT+TGG + chr4_1:77066147-77066166 Msa0573780:CDS 40.0%
! TTGCTTTCTGGCATGTACTT+GGG + chr4_1:77066148-77066167 Msa0573780:CDS 40.0%
TGTACTTGGGGGAAATTGTA+CGG + chr4_1:77066161-77066180 Msa0573780:CDS 40.0%
TCCGAAAAATTCAGCCTCTT+CGG - chr4_1:77066206-77066225 None:intergenic 40.0%
!! GACCATTTTAGTATCAGCCT+TGG + chr4_1:77066389-77066408 Msa0573780:intron 40.0%
GTGAAAATAAGAGGGAACCA+AGG - chr4_1:77066409-77066428 None:intergenic 40.0%
! CTACGTTTGCGTTCCATTTT+AGG - chr4_1:77066611-77066630 None:intergenic 40.0%
CTAAAATGGAACGCAAACGT+AGG + chr4_1:77066609-77066628 Msa0573780:intron 40.0%
AAACAGGTGATAAAGGGCAA+AGG - chr4_1:77066708-77066727 None:intergenic 40.0%
CAGGGTAAAACAGGTGATAA+AGG - chr4_1:77066715-77066734 None:intergenic 40.0%
GTAACTCAACAGGGTAAAAC+AGG - chr4_1:77066724-77066743 None:intergenic 40.0%
AGAGGTTGGAAGCAAATTGA+AGG + chr4_1:77066864-77066883 Msa0573780:CDS 40.0%
ACTAGGAAGAGACACAGTTA+AGG + chr4_1:77067124-77067143 Msa0573780:CDS 40.0%
CTAGGAAGAGACACAGTTAA+GGG + chr4_1:77067125-77067144 Msa0573780:CDS 40.0%
GCAAAAGTCAGTGATAGCAT+TGG + chr4_1:77067157-77067176 Msa0573780:CDS 40.0%
! AAGTCAGTGATAGCATTGGA+TGG + chr4_1:77067161-77067180 Msa0573780:CDS 40.0%
ATTAGCATGCTCAACGACAA+CGG - chr4_1:77067270-77067289 None:intergenic 40.0%
AGCTTCTCACTCTCAGTATT+TGG + chr4_1:77067322-77067341 Msa0573780:CDS 40.0%
GCTTCTCACTCTCAGTATTT+GGG + chr4_1:77067323-77067342 Msa0573780:CDS 40.0%
TCAGTATTTGGGAGTAGAAG+AGG + chr4_1:77067334-77067353 Msa0573780:CDS 40.0%
!!! CACCCGTTATTTTGATTGCA+GGG + chr4_1:77067541-77067560 Msa0573780:three_prime_UTR 40.0%
TGACAGTGCAGTTAGGAGTT+AGG - chr4_1:77063294-77063313 None:intergenic 45.0%
!! ACGTAGCGTGGCTATTTTGA+AGG + chr4_1:77063566-77063585 Msa0573780:CDS 45.0%
TAGACAGTTGGCTGATGCTA+TGG + chr4_1:77063626-77063645 Msa0573780:CDS 45.0%
ATGGATGTTGAGATGCATGC+TGG + chr4_1:77063645-77063664 Msa0573780:CDS 45.0%
CGTGTCCTTCGTGTACATTT+AGG + chr4_1:77064610-77064629 Msa0573780:CDS 45.0%
GTCCTTCGTGTACATTTAGG+TGG + chr4_1:77064613-77064632 Msa0573780:CDS 45.0%
! ATCCCTCCTCAATTGATGAC+CGG + chr4_1:77064679-77064698 Msa0573780:CDS 45.0%
AACCGGTCATCAATTGAGGA+GGG - chr4_1:77064684-77064703 None:intergenic 45.0%
GAAGAACCGGTCATCAATTG+AGG - chr4_1:77064688-77064707 None:intergenic 45.0%
! ATTGATGACCGGTTCTTCAG+AGG + chr4_1:77064690-77064709 Msa0573780:CDS 45.0%
TTCAGAGGTAAGCGTGTTCT+GGG + chr4_1:77064705-77064724 Msa0573780:intron 45.0%
! GCAATTGAGGTTTGCTTCAC+AGG - chr4_1:77064911-77064930 None:intergenic 45.0%
TAGAGTCCCAGATGCAATTG+AGG - chr4_1:77064924-77064943 None:intergenic 45.0%
! AGTTGGTCTCTATCGCTTGT+AGG + chr4_1:77065393-77065412 Msa0573780:intron 45.0%
GTCCTTGGAAAAAATTGGCC+TGG + chr4_1:77065447-77065466 Msa0573780:CDS 45.0%
! ACAATTGGAACATTGGCTGG+AGG + chr4_1:77065692-77065711 Msa0573780:CDS 45.0%
TGGAGGCAGATTCTACAATC+AGG + chr4_1:77065709-77065728 Msa0573780:CDS 45.0%
GTCATTGCTGCTGTGATTCT+CGG + chr4_1:77065734-77065753 Msa0573780:CDS 45.0%
ACGCGCATGCTATTCCAAAA+TGG + chr4_1:77065786-77065805 Msa0573780:CDS 45.0%
!! CATGGCCTTATGCCAAAATC+AGG + chr4_1:77065809-77065828 Msa0573780:CDS 45.0%
TTACGATGCTACTAAGAGGC+AGG + chr4_1:77065886-77065905 Msa0573780:intron 45.0%
GATGCTGAAAGCTTAAACCC+TGG + chr4_1:77066019-77066038 Msa0573780:CDS 45.0%
AAGCTTAAACCCTGGAGAAC+AGG + chr4_1:77066027-77066046 Msa0573780:CDS 45.0%
!! AATCTGTGAAGGATGGTGGA+AGG - chr4_1:77066119-77066138 None:intergenic 45.0%
! TGCTTTCTGGCATGTACTTG+GGG + chr4_1:77066149-77066168 Msa0573780:CDS 45.0%
!! ACGGAGAGCTTTGTTGAAGA+TGG + chr4_1:77066180-77066199 Msa0573780:CDS 45.0%
TTTGTTGAAGATGGCCGAAG+AGG + chr4_1:77066189-77066208 Msa0573780:CDS 45.0%
! GCCGAAGAGGCTGAATTTTT+CGG + chr4_1:77066202-77066221 Msa0573780:CDS 45.0%
GCTGTTCAGACTTCTTCATG+TGG + chr4_1:77066367-77066386 Msa0573780:intron 45.0%
CACAACACCAGATCTGAAAG+AGG + chr4_1:77066846-77066865 Msa0573780:CDS 45.0%
ACACCAGATCTGAAAGAGGT+TGG + chr4_1:77066850-77066869 Msa0573780:CDS 45.0%
CTTCCAACCTCTTTCAGATC+TGG - chr4_1:77066856-77066875 None:intergenic 45.0%
! CTTGCTGCTGGTGGTATTTT+GGG + chr4_1:77067089-77067108 Msa0573780:CDS 45.0%
! TCAGTGATAGCATTGGATGG+AGG + chr4_1:77067164-77067183 Msa0573780:CDS 45.0%
GATACGCTGAAGGAATTGCT+TGG + chr4_1:77067227-77067246 Msa0573780:CDS 45.0%
GAAGGAATTGCTTGGAGATG+AGG + chr4_1:77067235-77067254 Msa0573780:CDS 45.0%
GTCGTTGAGCATGCTAATGA+TGG + chr4_1:77067272-77067291 Msa0573780:CDS 45.0%
GAGCATGCTAATGATGGTTC+AGG + chr4_1:77067278-77067297 Msa0573780:CDS 45.0%
GCTAATGATGGTTCAGGCAT+TGG + chr4_1:77067284-77067303 Msa0573780:CDS 45.0%
!!! GCACCCGTTATTTTGATTGC+AGG + chr4_1:77067540-77067559 Msa0573780:three_prime_UTR 45.0%
!! ATTAATCAAATTATATTTAT+TGG + chr4_1:77066058-77066077 Msa0573780:intron 5.0%
!! TTGAGTGATGGGTAAGGTCG+CGG + chr4_1:77063455-77063474 Msa0573780:exon 50.0%
!! CATGCTGGTCTTGCATCTGA+AGG + chr4_1:77063660-77063679 Msa0573780:CDS 50.0%
TAGTGACTGACTGACCCAGT+AGG - chr4_1:77063729-77063748 None:intergenic 50.0%
GAACCGGTCATCAATTGAGG+AGG - chr4_1:77064685-77064704 None:intergenic 50.0%
! CACGCTTACCTCTGAAGAAC+CGG - chr4_1:77064701-77064720 None:intergenic 50.0%
CTTCAGAGGTAAGCGTGTTC+TGG + chr4_1:77064704-77064723 Msa0573780:intron 50.0%
GGTGGAGGATGAAAACCTTC+AGG - chr4_1:77064851-77064870 None:intergenic 50.0%
! GAAGGTTTTCATCCTCCACC+TGG + chr4_1:77064851-77064870 Msa0573780:CDS 50.0%
AGTTCTCTTTGTCTGCCAGG+TGG - chr4_1:77064869-77064888 None:intergenic 50.0%
CCTGGCAGACAAAGAGAACT+CGG + chr4_1:77064869-77064888 Msa0573780:CDS 50.0%
GGTCTCTATCGCTTGTAGGT+TGG + chr4_1:77065397-77065416 Msa0573780:intron 50.0%
! CTTGTAGGTTGGCGAAGATG+TGG + chr4_1:77065408-77065427 Msa0573780:intron 50.0%
! TAGGTTGGCGAAGATGTGGT+GGG + chr4_1:77065412-77065431 Msa0573780:intron 50.0%
GGGAGAACTAACCAAGTCCT+TGG + chr4_1:77065432-77065451 Msa0573780:CDS 50.0%
CTGCTGTGATTCTCGGTACT+GGG + chr4_1:77065741-77065760 Msa0573780:CDS 50.0%
!! GGCATAAGGCCATGCCATTT+TGG - chr4_1:77065803-77065822 None:intergenic 50.0%
!! GAAGGATGGTGGAAGGATCA+AGG - chr4_1:77066112-77066131 None:intergenic 50.0%
! GCTTTCTGGCATGTACTTGG+GGG + chr4_1:77066150-77066169 Msa0573780:CDS 50.0%
TGGTGCATGGAAGACATGTC+AGG - chr4_1:77066823-77066842 None:intergenic 50.0%
!! TCAGATCTGGTGTTGTGTCG+TGG - chr4_1:77066843-77066862 None:intergenic 50.0%
CCAAAATACCACCAGCAGCA+AGG - chr4_1:77067091-77067110 None:intergenic 50.0%
! CCTTGCTGCTGGTGGTATTT+TGG + chr4_1:77067088-77067107 Msa0573780:CDS 50.0%
GGAAGAGACACAGTTAAGGG+TGG + chr4_1:77067128-77067147 Msa0573780:CDS 50.0%
TTGCTTGGAGGATACGCTGA+AGG + chr4_1:77067217-77067236 Msa0573780:CDS 50.0%
CAGGCTACATTCCGCAAAAC+AGG - chr4_1:77067628-77067647 None:intergenic 50.0%
GAGAAAGTGGACACGTAGCG+TGG + chr4_1:77063554-77063573 Msa0573780:CDS 55.0%
!! GCTGGTCTTGCATCTGAAGG+TGG + chr4_1:77063663-77063682 Msa0573780:CDS 55.0%
TCTCTTTGTCTGCCAGGTGG+AGG - chr4_1:77064866-77064885 None:intergenic 55.0%
CCGAGTTCTCTTTGTCTGCC+AGG - chr4_1:77064872-77064891 None:intergenic 55.0%
! GTAGGTTGGCGAAGATGTGG+TGG + chr4_1:77065411-77065430 Msa0573780:intron 55.0%
GAGCTGCAACACGCATATCC+AGG - chr4_1:77065468-77065487 None:intergenic 55.0%
GCTGCTGTGATTCTCGGTAC+TGG + chr4_1:77065740-77065759 Msa0573780:CDS 55.0%
GAGGCAGGTCATGACTAACC+CGG + chr4_1:77065901-77065920 Msa0573780:intron 55.0%
!! TGGTGTTGTGTCGTGGTGCA+TGG - chr4_1:77066836-77066855 None:intergenic 55.0%
TGTGACATTGTCGCCAGTCG+CGG + chr4_1:77067059-77067078 Msa0573780:CDS 55.0%
!! ATAACGGGTGCCCCTGTTAC+CGG - chr4_1:77067531-77067550 None:intergenic 55.0%
!! AGTGATGGGTAAGGTCGCGG+TGG + chr4_1:77063458-77063477 Msa0573780:exon 60.0%
!! GTGATGGGTAAGGTCGCGGT+GGG + chr4_1:77063459-77063478 Msa0573780:exon 60.0%
GGGCAGACCATGTCTGCTGT+GGG + chr4_1:77067493-77067512 Msa0573780:three_prime_UTR 60.0%
GGCAGACCATGTCTGCTGTG+GGG + chr4_1:77067494-77067513 Msa0573780:three_prime_UTR 60.0%
GCAGACCATGTCTGCTGTGG+GGG + chr4_1:77067495-77067514 Msa0573780:three_prime_UTR 60.0%
GTGCTCCTTGGCCGGTAACA+GGG + chr4_1:77067517-77067536 Msa0573780:three_prime_UTR 60.0%
TGCTCCTTGGCCGGTAACAG+GGG + chr4_1:77067518-77067537 Msa0573780:three_prime_UTR 60.0%
TAAGGTCGCGGTGGGAGCTG+CGG + chr4_1:77063467-77063486 Msa0573780:CDS 65.0%
AAGAGCCGCCGCGGCACAAA+CGG - chr4_1:77063508-77063527 None:intergenic 65.0%
CGGGCAGACCATGTCTGCTG+TGG + chr4_1:77067492-77067511 Msa0573780:three_prime_UTR 65.0%
GAGCACCCCCACAGCAGACA+TGG - chr4_1:77067503-77067522 None:intergenic 65.0%
!! TCTGCTGTGGGGGTGCTCCT+TGG + chr4_1:77067505-77067524 Msa0573780:three_prime_UTR 65.0%
GGTGCTCCTTGGCCGGTAAC+AGG + chr4_1:77067516-77067535 Msa0573780:three_prime_UTR 65.0%
TTGTGCCGCGGCGGCTCTTG+TGG + chr4_1:77063509-77063528 Msa0573780:CDS 70.0%
AGCAAGGCGTGCACCGCGAC+TGG - chr4_1:77067075-77067094 None:intergenic 70.0%
GGTGCACGCCTTGCTGCTGG+TGG + chr4_1:77067080-77067099 Msa0573780:CDS 70.0%
!! CTGTGGGGGTGCTCCTTGGC+CGG + chr4_1:77067509-77067528 Msa0573780:three_prime_UTR 70.0%
GGTGCCCCTGTTACCGGCCA+AGG - chr4_1:77067525-77067544 None:intergenic 70.0%
TGCCGCCGCCGTTTGTGCCG+CGG + chr4_1:77063497-77063516 Msa0573780:CDS 75.0%
AGCCGCCGCGGCACAAACGG+CGG - chr4_1:77063505-77063524 None:intergenic 75.0%
CGCGGTGCACGCCTTGCTGC+TGG + chr4_1:77067077-77067096 Msa0573780:CDS 75.0%
! CGCCGCGGCACAAACGGCGG+CGG - chr4_1:77063502-77063521 None:intergenic 80.0%
! CGCCGCCGTTTGTGCCGCGG+CGG + chr4_1:77063500-77063519 Msa0573780:CDS 80.0%
! CCGCGCCACAAGAGCCGCCG+CGG - chr4_1:77063517-77063536 None:intergenic 80.0%
! CCGCGGCGGCTCTTGTGGCG+CGG + chr4_1:77063514-77063533 Msa0573780:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 77063173 77067947 77063173 ID=Msa0573780;Name=Msa0573780
chr4_1 mRNA 77063173 77067947 77063173 ID=Msa0573780-mRNA-1;Parent=Msa0573780;Name=Msa0573780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=267|1|1|1|0.88|0.8|10|583|499
chr4_1 exon 77063173 77063252 77063173 ID=Msa0573780-mRNA-1:exon:27051;Parent=Msa0573780-mRNA-1
chr4_1 exon 77063275 77063733 77063275 ID=Msa0573780-mRNA-1:exon:27052;Parent=Msa0573780-mRNA-1
chr4_1 exon 77064561 77064711 77064561 ID=Msa0573780-mRNA-1:exon:27053;Parent=Msa0573780-mRNA-1
chr4_1 exon 77064797 77064979 77064797 ID=Msa0573780-mRNA-1:exon:27054;Parent=Msa0573780-mRNA-1
chr4_1 exon 77065415 77065489 77065415 ID=Msa0573780-mRNA-1:exon:27055;Parent=Msa0573780-mRNA-1
chr4_1 exon 77065683 77065838 77065683 ID=Msa0573780-mRNA-1:exon:27056;Parent=Msa0573780-mRNA-1
chr4_1 exon 77065950 77066048 77065950 ID=Msa0573780-mRNA-1:exon:27057;Parent=Msa0573780-mRNA-1
chr4_1 exon 77066136 77066266 77066136 ID=Msa0573780-mRNA-1:exon:27058;Parent=Msa0573780-mRNA-1
chr4_1 exon 77066816 77066897 77066816 ID=Msa0573780-mRNA-1:exon:27059;Parent=Msa0573780-mRNA-1
chr4_1 exon 77067014 77067947 77067014 ID=Msa0573780-mRNA-1:exon:27060;Parent=Msa0573780-mRNA-1
chr4_1 five_prime_UTR 77063173 77063252 77063173 ID=Msa0573780-mRNA-1:five_prime_utr;Parent=Msa0573780-mRNA-1
chr4_1 five_prime_UTR 77063275 77063461 77063275 ID=Msa0573780-mRNA-1:five_prime_utr;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77063462 77063733 77063462 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77064561 77064711 77064561 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77064797 77064979 77064797 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77065415 77065489 77065415 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77065683 77065838 77065683 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77065950 77066048 77065950 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77066136 77066266 77066136 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77066816 77066897 77066816 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 CDS 77067014 77067364 77067014 ID=Msa0573780-mRNA-1:cds;Parent=Msa0573780-mRNA-1
chr4_1 three_prime_UTR 77067365 77067947 77067365 ID=Msa0573780-mRNA-1:three_prime_utr;Parent=Msa0573780-mRNA-1
Gene Sequence

>Msa0573780

ATGGGTAAGGTCGCGGTGGGAGCTGCGGTTGTTTGTGCCGCCGCCGTTTGTGCCGCGGCGGCTCTTGTGGCGCGGCACCGTATGATAAGTTCGAGAAAGTGGACACGTAGCGTGGCTATTTTGAAGGAGTTTGGGGAAAAGTGTGAGACACCAATTGGAAAGCTTAGACAGTTGGCTGATGCTATGGATGTTGAGATGCATGCTGGTCTTGCATCTGAAGGTGGCAGTAAGCTTAGTATGTTAATCAGCTATGTTGATAATCTTCCTACTGGGGATGAGGAAGGACTCTATTATGCTCTAGATCTTGGTGGAACAAACTTCCGTGTCCTTCGTGTACATTTAGGTGGAAAAGAGAAAGGTGTCATTAGCCAAGAGTTTGATGAAGTTTCAATCCCTCCTCAATTGATGACCGGTTCTTCAGAGGGATTATTTGATTTTATAGCAGCAGCTCTCGCAAAATTTGTTGAGTCAGAACCTGAAGGTTTTCATCCTCCACCTGGCAGACAAAGAGAACTCGGTTTTACGTTCTCGTTCCCTGTGAAGCAAACCTCAATTGCATCTGGGACTCTAATAAAGTGGACTAAGGGTTTCAGTATTGATGATACCGTTGGCGAAGATGTGGTGGGAGAACTAACCAAGTCCTTGGAAAAAATTGGCCTGGATATGCGTGTTGCAGCTCTAGTTAATGATACAATTGGAACATTGGCTGGAGGCAGATTCTACAATCAGGATGTCATTGCTGCTGTGATTCTCGGTACTGGGACAAACGCAGCATATGTAGAACACGCGCATGCTATTCCAAAATGGCATGGCCTTATGCCAAAATCAGGAAATATGGTTATAAACATGGAATGGGGTAATTTCCGATCATCACATCTTCCTTTAACCGAATATGATCAAGATCTTGATGCTGAAAGCTTAAACCCTGGAGAACAGATTTTTGAGAAATTGCTTTCTGGCATGTACTTGGGGGAAATTGTACGGAGAGCTTTGTTGAAGATGGCCGAAGAGGCTGAATTTTTCGGAGATACTGTTCCCCCTAAGTTGAAAATTCCTTTTATACTTAGGACACCTGACATGTCTTCCATGCACCACGACACAACACCAGATCTGAAAGAGGTTGGAAGCAAATTGAAGGATATATTGGAGATCTCTAATACATCACTAAAAACGAGGAAGATTGTTGTGGAACTCTGTGACATTGTCGCCAGTCGCGGTGCACGCCTTGCTGCTGGTGGTATTTTGGGAATCCTTAAGAAACTAGGAAGAGACACAGTTAAGGGTGGAGAGAAGCAAAAGTCAGTGATAGCATTGGATGGAGGATTGTTTGAACACTACACTAAATTCAGAGTTTGCTTGGAGGATACGCTGAAGGAATTGCTTGGAGATGAGGCAGCTGAAACCGTTGTCGTTGAGCATGCTAATGATGGTTCAGGCATTGGAGCAGCGCTTCTAGCAGCTTCTCACTCTCAGTATTTGGGAGTAGAAGAGGAGTTCTAA

Protein sequence

>Msa0573780

MGKVAVGAAVVCAAAVCAAAALVARHRMISSRKWTRSVAILKEFGEKCETPIGKLRQLADAMDVEMHAGLASEGGSKLSMLISYVDNLPTGDEEGLYYALDLGGTNFRVLRVHLGGKEKGVISQEFDEVSIPPQLMTGSSEGLFDFIAAALAKFVESEPEGFHPPPGRQRELGFTFSFPVKQTSIASGTLIKWTKGFSIDDTVGEDVVGELTKSLEKIGLDMRVAALVNDTIGTLAGGRFYNQDVIAAVILGTGTNAAYVEHAHAIPKWHGLMPKSGNMVINMEWGNFRSSHLPLTEYDQDLDAESLNPGEQIFEKLLSGMYLGEIVRRALLKMAEEAEFFGDTVPPKLKIPFILRTPDMSSMHHDTTPDLKEVGSKLKDILEISNTSLKTRKIVVELCDIVASRGARLAAGGILGILKKLGRDTVKGGEKQKSVIALDGGLFEHYTKFRVCLEDTLKELLGDEAAETVVVEHANDGSGIGAALLAASHSQYLGVEEEF*