AlfalfaGEDB | Msa0574640

M. sativa cultivar zhongmu-4 / Msa0574640

KEGG: K00913|K01876
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00152.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574640	XP_003609716.2	95.604	364	4	1	1	364	312	663	0.0	712

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574640	sp\|F4JJT9\|SYDM_ARATH	75.275	364	74	2	1	364	316	663	0.0	578

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574640	G7JLL8	95.604	364	4	1	1	364	312	663	0.0	712

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007230	Msa0574640	0.803192	3.919443e-49	-8.615850e-47
Msa0055590	Msa0574640	0.807070	6.048416e-50	-8.615850e-47
Msa0158020	Msa0574640	0.864188	1.455544e-64	-8.615850e-47
Msa0350020	Msa0574640	0.803637	3.169260e-49	-8.615850e-47
Msa0573780	Msa0574640	0.836307	1.010317e-56	-8.615850e-47
Msa0573860	Msa0574640	0.814641	1.389462e-51	-8.615850e-47
Msa0574170	Msa0574640	0.823556	1.299602e-53	-8.615850e-47
Msa0574430	Msa0574640	0.819992	8.678002e-53	-8.615850e-47
Msa0574520	Msa0574640	0.816476	5.423525e-52	-8.615850e-47
Msa0574640	Msa0575270	0.814742	1.319761e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0574640	MtrunA17_Chr4g0067881	95.604	364	4	1	1	364	312	663	712
Msa0574640	MtrunA17_Chr8g0391331	95.604	364	4	1	1	364	314	665	712
Msa0574640	MtrunA17_Chr1g0211491	84.367	371	21	3	1	364	269	609	615
Msa0574640	MtrunA17_Chr4g0025921	76.648	364	36	4	1	364	302	616	543
Msa0574640	MtrunA17_Chr4g0025931	75.549	364	39	4	1	363	288	602	533

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574640	AT4G33760.2	75.275	364	74	2	1	364	180	527	0.0	580
Msa0574640	AT4G33760.1	75.275	364	74	2	1	364	316	663	0.0	578

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Find 189 sgRNAs with CRISPR-Local

Find 599 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTAACCAAAAGGAAG+TGG	0.536531	4_1:+78269592	None:intergenic
AAACAGTTCGTATTTGTGGA+TGG	0.489261	4_1:-78268911	Msa0574640:five_prime_UTR
AAAGTAATTTGTGTACCTTC+TGG	0.364160	4_1:-78264300	Msa0574640:CDS
AAATAATCCCGGGCACCTTC+TGG	0.327607	4_1:+78266449	None:intergenic
AAATTGATGGGGTGCGTCGA+AGG	0.489063	4_1:+78269144	None:intergenic
AAATTGTAATCAAGTCCAAC+TGG	0.464900	4_1:+78260837	None:intergenic
AACACTTCCAGATGAATTTC+CGG	0.336916	4_1:-78268814	Msa0574640:five_prime_UTR
AACAGTTCGTATTTGTGGAT+GGG	0.493571	4_1:-78268910	Msa0574640:five_prime_UTR
AACATAAATAAGACTAGGAA+TGG	0.482761	4_1:+78263307	None:intergenic
AACGACGAAGAACTGAGAAG+TGG	0.614158	4_1:+78269621	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGAAAAACACTAACCAAA+AGG	+	chr4_1:78260982-78261001	None:intergenic	30.0%
CGGTAAAGATGCTAATATTT+AGG	-	chr4_1:78261073-78261092	Msa0574640:CDS	30.0%
ATAGAAAAGGGTTTATGGTA+TGG	+	chr4_1:78261276-78261295	None:intergenic	30.0%
AGAGAGAAAGAAAATTGATG+GGG	+	chr4_1:78261435-78261454	None:intergenic	30.0%
CTAGAGAGAAAGAAAATTGA+TGG	+	chr4_1:78261437-78261456	None:intergenic	30.0%
TGTGGAAATTAAAGTTGGAA+TGG	+	chr4_1:78261471-78261490	None:intergenic	30.0%
TGCAATCAATAACCTTAGAT+TGG	-	chr4_1:78261784-78261803	Msa0574640:intron	30.0%
ATCAACAAGAAGATGAAAAC+TGG	-	chr4_1:78261857-78261876	Msa0574640:intron	30.0%
GACTTAATAACATGCAAACA+TGG	+	chr4_1:78262119-78262138	None:intergenic	30.0%
ATAGTACGGAAAATTGTGAT+AGG	+	chr4_1:78262211-78262230	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	78260738	78269849	78260738	ID=Msa0574640;Name=Msa0574640
chr4_1	mRNA	78260738	78269849	78260738	ID=Msa0574640-mRNA-1;Parent=Msa0574640;Name=Msa0574640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=1153\|0.76\|0.85\|1\|0.61\|0.71\|14\|306\|364
chr4_1	exon	78260738	78261210	78260738	ID=Msa0574640-mRNA-1:exon:27741;Parent=Msa0574640-mRNA-1
chr4_1	exon	78261893	78261950	78261893	ID=Msa0574640-mRNA-1:exon:27740;Parent=Msa0574640-mRNA-1
chr4_1	exon	78263310	78263426	78263310	ID=Msa0574640-mRNA-1:exon:27739;Parent=Msa0574640-mRNA-1
chr4_1	exon	78263525	78263623	78263525	ID=Msa0574640-mRNA-1:exon:27738;Parent=Msa0574640-mRNA-1
chr4_1	exon	78263732	78263803	78263732	ID=Msa0574640-mRNA-1:exon:27737;Parent=Msa0574640-mRNA-1
chr4_1	exon	78263901	78264088	78263901	ID=Msa0574640-mRNA-1:exon:27736;Parent=Msa0574640-mRNA-1
chr4_1	exon	78264184	78264391	78264184	ID=Msa0574640-mRNA-1:exon:27735;Parent=Msa0574640-mRNA-1
chr4_1	exon	78264572	78264694	78264572	ID=Msa0574640-mRNA-1:exon:27734;Parent=Msa0574640-mRNA-1
chr4_1	exon	78265039	78265159	78265039	ID=Msa0574640-mRNA-1:exon:27733;Parent=Msa0574640-mRNA-1
chr4_1	exon	78266343	78266362	78266343	ID=Msa0574640-mRNA-1:exon:27732;Parent=Msa0574640-mRNA-1
chr4_1	exon	78266430	78266501	78266430	ID=Msa0574640-mRNA-1:exon:27731;Parent=Msa0574640-mRNA-1
chr4_1	exon	78266614	78266725	78266614	ID=Msa0574640-mRNA-1:exon:27730;Parent=Msa0574640-mRNA-1
chr4_1	exon	78268588	78269230	78268588	ID=Msa0574640-mRNA-1:exon:27729;Parent=Msa0574640-mRNA-1
chr4_1	exon	78269602	78269849	78269602	ID=Msa0574640-mRNA-1:exon:27728;Parent=Msa0574640-mRNA-1
chr4_1	five_prime_UTR	78269602	78269849	78269602	ID=Msa0574640-mRNA-1:five_prime_utr;Parent=Msa0574640-mRNA-1
chr4_1	five_prime_UTR	78268588	78269230	78268588	ID=Msa0574640-mRNA-1:five_prime_utr;Parent=Msa0574640-mRNA-1
chr4_1	five_prime_UTR	78266614	78266725	78266614	ID=Msa0574640-mRNA-1:five_prime_utr;Parent=Msa0574640-mRNA-1
chr4_1	five_prime_UTR	78266430	78266501	78266430	ID=Msa0574640-mRNA-1:five_prime_utr;Parent=Msa0574640-mRNA-1
chr4_1	five_prime_UTR	78266343	78266362	78266343	ID=Msa0574640-mRNA-1:five_prime_utr;Parent=Msa0574640-mRNA-1
chr4_1	five_prime_UTR	78265102	78265159	78265102	ID=Msa0574640-mRNA-1:five_prime_utr;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78265039	78265101	78265039	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78264572	78264694	78264572	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78264184	78264391	78264184	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78263901	78264088	78263901	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78263732	78263803	78263732	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78263525	78263623	78263525	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78263310	78263426	78263310	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78261893	78261950	78261893	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	CDS	78261044	78261210	78261044	ID=Msa0574640-mRNA-1:cds;Parent=Msa0574640-mRNA-1
chr4_1	three_prime_UTR	78260738	78261043	78260738	ID=Msa0574640-mRNA-1:three_prime_utr;Parent=Msa0574640-mRNA-1

Gene Sequence

>Msa0574640

ATGGAGATGGCTTTTACTCCTTTAGAGGATATGTTGTCTCTTAATGAAGAGTTGATCAGAAAGGTTTTTCTTGAAATTAAGGGCGTGGAATTACCAAACCCTTTCCCCAGGCTTACATATGCTGAAGCAATGAATAGATATGGTTCGGACCGTCCAGATACCAGATTTGATCTAGAATTAAAAGATGTATCTGACATTTTCTCAGGGTCTTCCTTCAAGGTTTTCTCTGATTCCTTGGAGTGTGGTGGTGTTATTAAAGTAATTTGTGTACCTTCTGGTGCAAAAAAGTACTCAAATTCAGTTCTTAAGAAACCTGGTGCACAGGGTGGTATTTACAACGAAGCACACAAATCTGGTGCAAAGGGTTTACCTTTTCTCAAGATCACGGAGAATGGGGATATTGAGGGAATTTCTGCTTTAGTATCAAGTATGGATTCTGCAACTAGAGAGGATTTATTAAGGCGATGCTCTGCAGGACCAGGTGATCTGATTTTATTTGCAGTTGGTCATCATGCATCTGTAAATAAAACTCTAGATCGTCTTAGAGTTTATGTGGCTCATGAATTAGGTTTGATCGACCATGCCAGACATTCAATTTTGTGGATTACCGACTTTCCAATGTTTGAGTGGAATGATTCGGAGCAGAGGCTTGAGGCTCTTCATCATCCTTTCACTGCACCAAATCCTGAAGACATGAACAACCTTCCATCGGCTCGTGCATTGGCTTATGACATGGTTTACAATGGGGTGGAGATTGGCGGGGGAAGTTTGAGAATTTATAAACGCGACATACAACAAAAGGTTTTGGAGACTGTAGGCATCTCAATGGAGCAGGCTAGTACATGCGACTCCATTCCTAGTCTTATTTATGCTGAAGCTAAGTTTGGATATCTTCTTGAAGCTCTTGACATGGGGGCTCCGCCACATGGAGGCATAGCTTTTGGTCTGGACAGATTGGTTATGTTGCTAGCTGGGGCTAATTCAATCAGGGATGTCATTGCTTTCCCAAAAACAACAACTGCACAGTGTGCCCTCACGAGATCACCTTCTGAGGTGGATCCCCAACAGCTGAAAGATCTTTCAATCACTACATAG

Protein sequence

>Msa0574640

MEMAFTPLEDMLSLNEELIRKVFLEIKGVELPNPFPRLTYAEAMNRYGSDRPDTRFDLELKDVSDIFSGSSFKVFSDSLECGGVIKVICVPSGAKKYSNSVLKKPGAQGGIYNEAHKSGAKGLPFLKITENGDIEGISALVSSMDSATREDLLRRCSAGPGDLILFAVGHHASVNKTLDRLRVYVAHELGLIDHARHSILWITDFPMFEWNDSEQRLEALHHPFTAPNPEDMNNLPSARALAYDMVYNGVEIGGGSLRIYKRDIQQKVLETVGISMEQASTCDSIPSLIYAEAKFGYLLEALDMGAPPHGGIAFGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRSPSEVDPQQLKDLSITT*