AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574170 MtrunA17_Chr8g0390401 96.154 104 4 0 57 160 586 689 5.13e-69 221
Msa0574170 MtrunA17_Chr8g0357041 43.448 145 70 4 26 162 370 510 3.02e-37 134
Msa0574170 MtrunA17_Chr2g0331251 39.735 151 79 3 12 152 410 558 2.58e-32 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574170 AT4G21900.1 62.921 89 33 0 57 145 485 573 4.19e-35 128
Msa0574170 AT2G16650.2 50.442 113 54 1 38 148 306 418 4.34e-35 127
Msa0574170 AT2G16650.1 50.442 113 54 1 38 148 405 517 8.22e-35 127
Msa0574170 AT2G32230.2 58.696 92 37 1 57 147 479 570 8.88e-34 125
Msa0574170 AT2G32230.1 58.696 92 37 1 57 147 479 570 8.88e-34 125

Find 167 sgRNAs with CRISPR-Local

Find 494 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATCATTTGTTTCAACTTC+TGG 0.179107 4_1:+77543414 Msa0574170:CDS
AGCTAAATTGCGGGTTTCTT+TGG 0.206390 4_1:+77541456 Msa0574170:five_prime_UTR
TCCTTGTTCTGTTGTTATTC+AGG 0.221050 4_1:+77543722 Msa0574170:CDS
GTCTCATCTAATAATTTAAA+TGG 0.232728 4_1:+77541661 Msa0574170:five_prime_UTR
TTCTAAAAGAGGGGATTTAA+AGG 0.242554 4_1:+77541486 Msa0574170:five_prime_UTR
TTCATCTCATACTGACAAAA+AGG 0.243237 4_1:+77541306 Msa0574170:five_prime_UTR
ACTCAATGCGCTGATTAATA+TGG 0.249923 4_1:-77544892 None:intergenic
GTGTATCACACGTGCTAAAT+TGG 0.253319 4_1:+77543973 Msa0574170:CDS
GCTTCCAACTCAGGTTCTTC+AGG 0.277661 4_1:-77542108 None:intergenic
CTTTGTTCTTCTGCAGCTAT+TGG 0.281836 4_1:+77541586 Msa0574170:five_prime_UTR
TGTTTGTGTTGCAGAGATTA+AGG 0.283516 4_1:-77540948 None:intergenic
GATGAGAAACCTCTGCAAAA+TGG 0.286182 4_1:+77544425 Msa0574170:intron
TTATCTACTTACTGTAATAA+TGG 0.290091 4_1:+77542030 Msa0574170:five_prime_UTR
TTTCTCAACAACCGTGTAAC+TGG 0.324431 4_1:-77541362 None:intergenic
GGATATTGCTGAATCAAATA+AGG 0.329065 4_1:-77541518 None:intergenic
GATCATTTGTTTCAACTTCT+GGG 0.330258 4_1:+77543415 Msa0574170:CDS
TCATTAAGTTCTGCTTCAAT+TGG 0.354266 4_1:-77543929 None:intergenic
ATGAGAAACCTCTGCAAAAT+GGG 0.361773 4_1:+77544426 Msa0574170:three_prime_UTR
TCAACCAATGCCTTGTTGAT+TGG 0.362207 4_1:-77543139 None:intergenic
AGGTTACCTTTAGGACGATA+TGG 0.362433 4_1:+77544052 Msa0574170:three_prime_UTR
AATCCTAGGTTAAGGTCTTA+TGG 0.368995 4_1:+77542000 Msa0574170:five_prime_UTR
GCAAAATTCTCAGTTTCAAC+AGG 0.370160 4_1:-77542450 None:intergenic
ACATGTAGATTAGATTAGAT+TGG 0.379029 4_1:+77541005 Msa0574170:five_prime_UTR
CTGATGCCTTTCTTTCCACT+TGG 0.380390 4_1:-77543452 None:intergenic
ATGGGATAAAGGATTGATAA+TGG 0.380414 4_1:+77542287 Msa0574170:five_prime_UTR
CTGCTGATTTGATTGTTGAT+TGG 0.381697 4_1:+77542226 Msa0574170:five_prime_UTR
CAGAAATGGATTGAATACTA+TGG 0.384397 4_1:+77542844 Msa0574170:intron
GGATAAGAGGAATGGGATAA+TGG 0.395428 4_1:+77541798 Msa0574170:five_prime_UTR
TAGGGATAAATCCTAGGTTA+AGG 0.401557 4_1:+77541992 Msa0574170:five_prime_UTR
ATGATCTCTCATCTCATCAT+TGG 0.401872 4_1:-77543398 None:intergenic
GATATGGAATCTTCATACTA+TGG 0.403467 4_1:+77544068 Msa0574170:three_prime_UTR
TCAACAAGGCATTGGTTGAT+AGG 0.403849 4_1:+77543143 Msa0574170:CDS
ACATTTACAAGGTTACCTTT+AGG 0.404425 4_1:+77544043 Msa0574170:three_prime_UTR
CCTGCGATATGAAACTAAAC+TGG 0.406689 4_1:-77544704 None:intergenic
ACCTCTGCAAAATGGGGAAC+AGG 0.408493 4_1:+77544433 Msa0574170:three_prime_UTR
GGACAGGTTGGTTGGGTAAA+GGG 0.416147 4_1:+77542343 Msa0574170:five_prime_UTR
CTGTCCTAGTTTAACACCTT+GGG 0.417066 4_1:-77541539 None:intergenic
ATAAGTGGAAACTTCTTTGA+AGG 0.417993 4_1:-77543073 None:intergenic
CCATAATTTGAGAGTGCAAA+AGG 0.418916 4_1:-77541145 None:intergenic
CGTGAAGAACATTGGATTGA+AGG 0.423729 4_1:-77541211 None:intergenic
GATACAAAAGAACAGTATAA+TGG 0.430667 4_1:-77541564 None:intergenic
TTTGAGAGTGCAAAAGGCTT+GGG 0.437150 4_1:-77541139 None:intergenic
ATTTGAGAGTGCAAAAGGCT+TGG 0.437771 4_1:-77541140 None:intergenic
GCTAAATTGGACATGGTTAG+TGG 0.446480 4_1:+77543986 Msa0574170:CDS
TGTTCTTCTGCAGCTATTGG+TGG 0.448693 4_1:+77541589 Msa0574170:five_prime_UTR
CATGTAGATTAGATTAGATT+GGG 0.448936 4_1:+77541006 Msa0574170:five_prime_UTR
TTGGTTGTTGTGTCAAGTGG+GGG 0.449906 4_1:-77541238 None:intergenic
TGGCATGGGACAGGTTGGTT+GGG 0.450920 4_1:+77542336 Msa0574170:five_prime_UTR
CAAACCAGTGTAGGAAATGA+TGG 0.453031 4_1:+77542381 Msa0574170:five_prime_UTR
TACATTTGCCTTATCGTATG+TGG 0.453458 4_1:-77541047 None:intergenic
AGTTTCTTACTTGAAATGTC+TGG 0.453497 4_1:-77542521 None:intergenic
TGATGCCTTTCTTTCCACTT+GGG 0.455973 4_1:-77543451 None:intergenic
GGGACAGGTTGGTTGGGTAA+AGG 0.459252 4_1:+77542342 Msa0574170:five_prime_UTR
GGCGTATCAAAGGAGACAAA+AGG 0.463022 4_1:+77543110 Msa0574170:CDS
TGAACTTCCCTTGGCTGTAA+AGG 0.473503 4_1:-77542903 None:intergenic
CCAGTTTAGTTTCATATCGC+AGG 0.475696 4_1:+77544704 Msa0574170:three_prime_UTR
TGGATGGCATGAACTTCCCT+TGG 0.478230 4_1:-77542912 None:intergenic
TCTAAAAGAGGGGATTTAAA+GGG 0.478557 4_1:+77541487 Msa0574170:five_prime_UTR
GTTGGTTGGGTAAAGGGAAA+TGG 0.480815 4_1:+77542349 Msa0574170:five_prime_UTR
ATTGACATCTGTGGCTAGAA+TGG 0.481180 4_1:+77541912 Msa0574170:five_prime_UTR
GCTGTCCTAGTTTAACACCT+TGG 0.481887 4_1:-77541540 None:intergenic
CAACTCTGCAGCCTCAAGTT+CGG 0.482797 4_1:-77544580 None:intergenic
ATACTCTATGCAACACCTAC+AGG 0.482929 4_1:+77543181 Msa0574170:CDS
TTTAGCAGCCACATACGATA+AGG 0.482995 4_1:+77541039 Msa0574170:five_prime_UTR
TTTGGTTGTTGTGTCAAGTG+GGG 0.485263 4_1:-77541239 None:intergenic
ATGATAAGGATAAGAGGAAT+GGG 0.485314 4_1:+77541791 Msa0574170:five_prime_UTR
AATGATAAGGATAAGAGGAA+TGG 0.485631 4_1:+77541790 Msa0574170:five_prime_UTR
TTTCTCATTGCTTATAGCAA+TGG 0.486205 4_1:-77542487 None:intergenic
GCATCTATCACTGCTTCAAA+AGG 0.486413 4_1:-77542868 None:intergenic
CGATTCGGTTTCTCTGATGC+TGG 0.490885 4_1:+77543678 Msa0574170:CDS
AAACCCGCAATTTAGCTTGT+GGG 0.490965 4_1:-77541450 None:intergenic
CTACAGGATCAAATGATGAT+TGG 0.494498 4_1:+77543197 Msa0574170:CDS
CTATGATGCAAAACAATAAG+TGG 0.496606 4_1:-77543088 None:intergenic
GAGGCTGCAGAGTTGATTAG+TGG 0.497760 4_1:+77544588 Msa0574170:three_prime_UTR
CTTCCAACTCAGGTTCTTCA+GGG 0.498182 4_1:-77542107 None:intergenic
AGATGAAGAAGAAGGAGAAG+AGG 0.499099 4_1:-77541290 None:intergenic
GAGGATGGCATGGGACAGGT+TGG 0.499348 4_1:+77542331 Msa0574170:five_prime_UTR
CAGTTGCAGTTGCAGAGTGA+GGG 0.500105 4_1:-77541083 None:intergenic
GGTGGAGGATGGCATGGGAC+AGG 0.500466 4_1:+77542327 Msa0574170:five_prime_UTR
ACATGAATGATAAGGATAAG+AGG 0.501905 4_1:+77541785 Msa0574170:five_prime_UTR
CTCAAGAGTGCTTCCAACTC+AGG 0.503977 4_1:-77542117 None:intergenic
TGGATCAGTGTTCTAAAAGA+GGG 0.506420 4_1:+77541476 Msa0574170:five_prime_UTR
ATGGCATGGGACAGGTTGGT+TGG 0.508670 4_1:+77542335 Msa0574170:five_prime_UTR
AGCAAAATCGCTTTAAGAGT+GGG 0.508909 4_1:+77542255 Msa0574170:five_prime_UTR
TAAATGTTGTGGAGTGCAAT+TGG 0.509532 4_1:+77542410 Msa0574170:five_prime_UTR
TTGGATCAGTGTTCTAAAAG+AGG 0.511467 4_1:+77541475 Msa0574170:five_prime_UTR
AAGATTCCATATCGTCCTAA+AGG 0.513429 4_1:-77544058 None:intergenic
TCTTCCCCAAGTGGAAAGAA+AGG 0.516386 4_1:+77543446 Msa0574170:CDS
TGAGAATATGTGTATGAGTA+AGG 0.518766 4_1:+77541870 Msa0574170:five_prime_UTR
TCAGTATGAGATGAAGAAGA+AGG 0.520949 4_1:-77541298 None:intergenic
ATTCAGTAACTTGCCTTGGA+TGG 0.524428 4_1:-77542928 None:intergenic
GGTCTTCGACCTGCGAAAAG+TGG 0.524767 4_1:+77541610 Msa0574170:five_prime_UTR
ATACGATAAGGCAAATGTAA+TGG 0.525285 4_1:+77541051 Msa0574170:five_prime_UTR
GTGATAGATGCTGCAAATGT+AGG 0.526795 4_1:+77542880 Msa0574170:five_prime_UTR
CATTCCATCATTTCCTACAC+TGG 0.529681 4_1:-77542385 None:intergenic
TATGAGTTGGCTGTATATCA+TGG 0.534443 4_1:-77544091 None:intergenic
GTTGAAATTGATTGAAGTGA+AGG 0.534858 4_1:-77541176 None:intergenic
GCGTATCAAAGGAGACAAAA+GGG 0.537954 4_1:+77543111 Msa0574170:CDS
ATGATGAAGCAGAAAGAAGA+TGG 0.537993 4_1:+77543948 Msa0574170:CDS
AATAACGGTGGAGGATGGCA+TGG 0.538779 4_1:+77542321 Msa0574170:five_prime_UTR
GATGCCTTTCTTTCCACTTG+GGG 0.541694 4_1:-77543450 None:intergenic
GAAACCCGCAATTTAGCTTG+TGG 0.542236 4_1:-77541451 None:intergenic
TGGTTGTTGTGTCAAGTGGG+GGG 0.543510 4_1:-77541237 None:intergenic
TGCAAAATAACGGTGGAGGA+TGG 0.543752 4_1:+77542316 Msa0574170:five_prime_UTR
CAAGTGGAAAGAAAGGCATC+AGG 0.544258 4_1:+77543453 Msa0574170:CDS
AAGAAATATGCACTACAAAG+AGG 0.553943 4_1:+77541835 Msa0574170:five_prime_UTR
GAGCAAAATCGCTTTAAGAG+TGG 0.555862 4_1:+77542254 Msa0574170:five_prime_UTR
GTATCTAGTTCACATTTACA+AGG 0.556072 4_1:+77544032 Msa0574170:exon
TGATGTTGAAAAGCACATGT+TGG 0.556500 4_1:+77542071 Msa0574170:five_prime_UTR
ATGGAAGCAATGCAAAATAA+CGG 0.556927 4_1:+77542306 Msa0574170:five_prime_UTR
GAATGGGATAATGGTGAGCG+AGG 0.558576 4_1:+77541807 Msa0574170:five_prime_UTR
AACCCGCAATTTAGCTTGTG+GGG 0.559927 4_1:-77541449 None:intergenic
TTGCATCATAGGCGTATCAA+AGG 0.560624 4_1:+77543100 Msa0574170:CDS
CGACCTGCGAAAAGTGGAAG+TGG 0.563418 4_1:+77541616 Msa0574170:five_prime_UTR
TAAGTGGAAACTTCTTTGAA+GGG 0.565681 4_1:-77543072 None:intergenic
ATATCCCAAGGTGTTAAACT+AGG 0.565875 4_1:+77541535 Msa0574170:five_prime_UTR
AGTTGCAGTTGCAGAGTGAG+GGG 0.566363 4_1:-77541082 None:intergenic
TAAACCAATCAACAAGGCAT+TGG 0.570466 4_1:+77543135 Msa0574170:CDS
CAGTTTAGTTTCATATCGCA+GGG 0.570836 4_1:+77544705 Msa0574170:three_prime_UTR
AGGGAGAAATACAAAGGCTA+AGG 0.571612 4_1:+77544724 Msa0574170:three_prime_UTR
GATGGAATGTGTAAATGTTG+TGG 0.572152 4_1:+77542399 Msa0574170:five_prime_UTR
TACTAGAACTTTGAATGCAC+AGG 0.573536 4_1:+77541639 Msa0574170:five_prime_UTR
CAAGTTCTTCAAACCAGTGT+AGG 0.574735 4_1:+77542372 Msa0574170:five_prime_UTR
TACTAGAAAAGAGTCTGCAA+AGG 0.582764 4_1:+77544466 Msa0574170:three_prime_UTR
ACCCGCAATTTAGCTTGTGG+GGG 0.583550 4_1:-77541448 None:intergenic
TGATAGTGACATGAATGATA+AGG 0.583884 4_1:+77541777 Msa0574170:five_prime_UTR
TTTGATTCAGCAATATCCCA+AGG 0.585577 4_1:+77541523 Msa0574170:five_prime_UTR
TTACAGTAAGTAGATAAAGC+AGG 0.586608 4_1:-77542024 None:intergenic
ATGTAGGCCTTTACAGCCAA+GGG 0.587024 4_1:+77542896 Msa0574170:five_prime_UTR
AGGGAAGTTCATGCCATCCA+AGG 0.592248 4_1:+77542915 Msa0574170:five_prime_UTR
AATGTAGGCCTTTACAGCCA+AGG 0.593324 4_1:+77542895 Msa0574170:five_prime_UTR
CCCGCAATTTAGCTTGTGGG+GGG 0.593676 4_1:-77541447 None:intergenic
GTCACCATCACTCATTGCCA+TGG 0.598569 4_1:-77541935 None:intergenic
ATCTGTGGCTAGAATGGCCA+TGG 0.598920 4_1:+77541918 Msa0574170:five_prime_UTR
ATAACGGTGGAGGATGGCAT+GGG 0.600626 4_1:+77542322 Msa0574170:five_prime_UTR
CACACGTGCTAAATTGGACA+TGG 0.604143 4_1:+77543979 Msa0574170:CDS
AGGAATCAGAAGAAGGCCAC+TGG 0.604583 4_1:+77543900 Msa0574170:intron
TGGTTGCAGGAATCAGAAGA+AGG 0.604739 4_1:+77543893 Msa0574170:intron
GCAGTTGCAGTTGCAGAGTG+AGG 0.604826 4_1:-77541084 None:intergenic
CAATCATCATTTGATCCTGT+AGG 0.609726 4_1:-77543196 None:intergenic
GCAATGCAAAATAACGGTGG+AGG 0.613704 4_1:+77542312 Msa0574170:five_prime_UTR
GGCAATGAGTGATGGTGACA+AGG 0.615969 4_1:+77541939 Msa0574170:five_prime_UTR
GGATCAGTGTTCTAAAAGAG+GGG 0.616326 4_1:+77541477 Msa0574170:five_prime_UTR
TTGAGAGTAAGCATAAGAGC+TGG 0.616424 4_1:+77542135 Msa0574170:five_prime_UTR
GACTCTTCAACAACATACAA+AGG 0.616484 4_1:+77544010 Msa0574170:CDS
TGAGAAACCTCTGCAAAATG+GGG 0.619135 4_1:+77544427 Msa0574170:three_prime_UTR
AACAAAGAACATTTAAAACA+TGG 0.620277 4_1:-77544998 None:intergenic
ACCTGAATAACAACAGAACA+AGG 0.621468 4_1:-77543723 None:intergenic
ACAAGGCATTGGTTGATAGG+TGG 0.623654 4_1:+77543146 Msa0574170:CDS
GTACCCTGAAGAACCTGAGT+TGG 0.627372 4_1:+77542104 Msa0574170:five_prime_UTR
TAACAGCAGTACCAGTTACA+CGG 0.628393 4_1:+77541351 Msa0574170:five_prime_UTR
TTCTTAGTTTATGCAACACA+TGG 0.628656 4_1:-77542176 None:intergenic
GAAATGACTTCTTCCCCAAG+TGG 0.634783 4_1:+77543437 Msa0574170:CDS
CTCGTTATTATCCGAACTTG+AGG 0.634891 4_1:+77544569 Msa0574170:three_prime_UTR
GGACCATAAGACCTTAACCT+AGG 0.639415 4_1:-77542003 None:intergenic
GAAAAGCACATGTTGGAACA+TGG 0.648794 4_1:+77542078 Msa0574170:five_prime_UTR
TATCGCAGGGAGAAATACAA+AGG 0.650537 4_1:+77544718 Msa0574170:three_prime_UTR
ATGGCCATGGCAATGAGTGA+TGG 0.659856 4_1:+77541931 Msa0574170:five_prime_UTR
CTTCAATTGGAATATGCCAG+TGG 0.661796 4_1:-77543916 None:intergenic
CCGCAATTTAGCTTGTGGGG+GGG 0.667914 4_1:-77541446 None:intergenic
ATAACAACAGAACAAGGAGG+CGG 0.677532 4_1:-77543717 None:intergenic
ATAAACTAAGAAGCAGTGTG+AGG 0.692717 4_1:+77542187 Msa0574170:five_prime_UTR
GAAGCAATGCAAAATAACGG+TGG 0.696359 4_1:+77542309 Msa0574170:five_prime_UTR
TGAAGCAGCATTGACATCTG+TGG 0.699676 4_1:+77541903 Msa0574170:five_prime_UTR
AAGGGATAAACCAATCAACA+AGG 0.704437 4_1:+77543129 Msa0574170:CDS
GTACTTGTAAGTTGTAACAA+CGG 0.718942 4_1:-77540972 None:intergenic
TGAATAACAACAGAACAAGG+AGG 0.769709 4_1:-77543720 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTCTTATTATAATGT+AGG + chr4_1:77543498-77543517 Msa0574170:intron 10.0%
!! GAAGAAAAAAAATATATATA+GGG - chr4_1:77543645-77543664 None:intergenic 10.0%
!!! AAATTTTCTTATTATAATGT+AGG + chr4_1:77543498-77543517 Msa0574170:intron 10.0%
!! GAAGAAAAAAAATATATATA+GGG - chr4_1:77543645-77543664 None:intergenic 10.0%
!!! TTAAACAAATGAAGATTTTA+GGG + chr4_1:77541974-77541993 Msa0574170:five_prime_UTR 15.0%
!! TGTATATATTTGATGAAAAA+AGG + chr4_1:77543522-77543541 Msa0574170:intron 15.0%
!! GGAAGAAAAAAAATATATAT+AGG - chr4_1:77543646-77543665 None:intergenic 15.0%
!!! TTTTTTTTCTTCCAAATTTT+AGG + chr4_1:77543653-77543672 Msa0574170:intron 15.0%
!!! AATTTTTTTAAACAGTACTA+TGG - chr4_1:77543769-77543788 None:intergenic 15.0%
!! ATAGTACTGTTTAAAAAAAT+TGG + chr4_1:77543768-77543787 Msa0574170:intron 15.0%
!! TAGTACTGTTTAAAAAAATT+GGG + chr4_1:77543769-77543788 Msa0574170:intron 15.0%
!!! TATTTTTGAGATTTATCTTT+TGG - chr4_1:77544124-77544143 None:intergenic 15.0%
!! GATAAATCTCAAAAATAAAA+TGG + chr4_1:77544127-77544146 Msa0574170:three_prime_UTR 15.0%
!! TTAAAAGTTAAGAGAATAAA+TGG - chr4_1:77544221-77544240 None:intergenic 15.0%
!!! TTTTGTTAAAATTTTAACAG+TGG + chr4_1:77544866-77544885 Msa0574170:three_prime_UTR 15.0%
!!! TTAAACAAATGAAGATTTTA+GGG + chr4_1:77541974-77541993 Msa0574170:five_prime_UTR 15.0%
!! TGTATATATTTGATGAAAAA+AGG + chr4_1:77543522-77543541 Msa0574170:intron 15.0%
!! GGAAGAAAAAAAATATATAT+AGG - chr4_1:77543646-77543665 None:intergenic 15.0%
!!! TTTTTTTTCTTCCAAATTTT+AGG + chr4_1:77543653-77543672 Msa0574170:intron 15.0%
!!! AATTTTTTTAAACAGTACTA+TGG - chr4_1:77543769-77543788 None:intergenic 15.0%
!! ATAGTACTGTTTAAAAAAAT+TGG + chr4_1:77543768-77543787 Msa0574170:intron 15.0%
!! TAGTACTGTTTAAAAAAATT+GGG + chr4_1:77543769-77543788 Msa0574170:intron 15.0%
!!! TATTTTTGAGATTTATCTTT+TGG - chr4_1:77544124-77544143 None:intergenic 15.0%
!! GATAAATCTCAAAAATAAAA+TGG + chr4_1:77544127-77544146 Msa0574170:three_prime_UTR 15.0%
!! TTAAAAGTTAAGAGAATAAA+TGG - chr4_1:77544221-77544240 None:intergenic 15.0%
!!! TTTTGTTAAAATTTTAACAG+TGG + chr4_1:77544866-77544885 Msa0574170:three_prime_UTR 15.0%
!! GTCTCATCTAATAATTTAAA+TGG + chr4_1:77541661-77541680 Msa0574170:five_prime_UTR 20.0%
!!! GTTAAACAAATGAAGATTTT+AGG + chr4_1:77541973-77541992 Msa0574170:five_prime_UTR 20.0%
!! TTATCTACTTACTGTAATAA+TGG + chr4_1:77542030-77542049 Msa0574170:five_prime_UTR 20.0%
!!! AAGGTTTAATTTTTGTTCTT+TGG + chr4_1:77543541-77543560 Msa0574170:intron 20.0%
!! TCTAAATTGTAATCAAAGAA+AGG - chr4_1:77543602-77543621 None:intergenic 20.0%
!! AAAATATAACATGACAATTG+TGG + chr4_1:77543873-77543892 Msa0574170:intron 20.0%
!! TCTTAAAATCTATACTTTAG+TGG - chr4_1:77544283-77544302 None:intergenic 20.0%
!! AGAAAGAGAAAAAAAAAACA+TGG - chr4_1:77544963-77544982 None:intergenic 20.0%
!!! AACAAAGAACATTTAAAACA+TGG - chr4_1:77545001-77545020 None:intergenic 20.0%
!! GTCTCATCTAATAATTTAAA+TGG + chr4_1:77541661-77541680 Msa0574170:five_prime_UTR 20.0%
!!! GTTAAACAAATGAAGATTTT+AGG + chr4_1:77541973-77541992 Msa0574170:five_prime_UTR 20.0%
!! TTATCTACTTACTGTAATAA+TGG + chr4_1:77542030-77542049 Msa0574170:five_prime_UTR 20.0%
!!! AAGGTTTAATTTTTGTTCTT+TGG + chr4_1:77543541-77543560 Msa0574170:intron 20.0%
!! TCTAAATTGTAATCAAAGAA+AGG - chr4_1:77543602-77543621 None:intergenic 20.0%
!! AAAATATAACATGACAATTG+TGG + chr4_1:77543873-77543892 Msa0574170:intron 20.0%
!! TCTTAAAATCTATACTTTAG+TGG - chr4_1:77544283-77544302 None:intergenic 20.0%
!! AGAAAGAGAAAAAAAAAACA+TGG - chr4_1:77544963-77544982 None:intergenic 20.0%
!!! AACAAAGAACATTTAAAACA+TGG - chr4_1:77545001-77545020 None:intergenic 20.0%
!!! GAGATTAAGGATTTTAATAG+AGG - chr4_1:77540938-77540957 None:intergenic 25.0%
! ACATGTAGATTAGATTAGAT+TGG + chr4_1:77541005-77541024 Msa0574170:five_prime_UTR 25.0%
! CATGTAGATTAGATTAGATT+GGG + chr4_1:77541006-77541025 Msa0574170:five_prime_UTR 25.0%
! GATACAAAAGAACAGTATAA+TGG - chr4_1:77541567-77541586 None:intergenic 25.0%
! AGGTGATTAATAAGTATATC+AGG - chr4_1:77542695-77542714 None:intergenic 25.0%
!! GTTATTTCGACAACAAAAAT+TGG - chr4_1:77542762-77542781 None:intergenic 25.0%
! GAAATTATGAATTGCAGAAA+TGG + chr4_1:77542830-77542849 Msa0574170:intron 25.0%
! AATGCAAGGTAAAAAGAAAA+AGG - chr4_1:77542966-77542985 None:intergenic 25.0%
! AATATATATAGGGATTTCGA+TGG - chr4_1:77543635-77543654 None:intergenic 25.0%
!!! TTTTGGTTAGTAATATGAGT+TGG - chr4_1:77544107-77544126 None:intergenic 25.0%
! TTAGTGGCATATATTATGAA+CGG - chr4_1:77544267-77544286 None:intergenic 25.0%
! TAATCAAAGGAAAAGAAAGT+GGG - chr4_1:77544405-77544424 None:intergenic 25.0%
! GTCAATCACAAAAAAATGAA+CGG + chr4_1:77544509-77544528 Msa0574170:three_prime_UTR 25.0%
!!! GAGATTAAGGATTTTAATAG+AGG - chr4_1:77540938-77540957 None:intergenic 25.0%
! ACATGTAGATTAGATTAGAT+TGG + chr4_1:77541005-77541024 Msa0574170:five_prime_UTR 25.0%
! CATGTAGATTAGATTAGATT+GGG + chr4_1:77541006-77541025 Msa0574170:five_prime_UTR 25.0%
! GATACAAAAGAACAGTATAA+TGG - chr4_1:77541567-77541586 None:intergenic 25.0%
! AGGTGATTAATAAGTATATC+AGG - chr4_1:77542695-77542714 None:intergenic 25.0%
!! GTTATTTCGACAACAAAAAT+TGG - chr4_1:77542762-77542781 None:intergenic 25.0%
! GAAATTATGAATTGCAGAAA+TGG + chr4_1:77542830-77542849 Msa0574170:intron 25.0%
! AATGCAAGGTAAAAAGAAAA+AGG - chr4_1:77542966-77542985 None:intergenic 25.0%
! AATATATATAGGGATTTCGA+TGG - chr4_1:77543635-77543654 None:intergenic 25.0%
!!! TTTTGGTTAGTAATATGAGT+TGG - chr4_1:77544107-77544126 None:intergenic 25.0%
! TTAGTGGCATATATTATGAA+CGG - chr4_1:77544267-77544286 None:intergenic 25.0%
! TAATCAAAGGAAAAGAAAGT+GGG - chr4_1:77544405-77544424 None:intergenic 25.0%
! GTCAATCACAAAAAAATGAA+CGG + chr4_1:77544509-77544528 Msa0574170:three_prime_UTR 25.0%
GTACTTGTAAGTTGTAACAA+CGG - chr4_1:77540975-77540994 None:intergenic 30.0%
ATACGATAAGGCAAATGTAA+TGG + chr4_1:77541051-77541070 Msa0574170:five_prime_UTR 30.0%
GTTGAAATTGATTGAAGTGA+AGG - chr4_1:77541179-77541198 None:intergenic 30.0%
TTCATCTCATACTGACAAAA+AGG + chr4_1:77541306-77541325 Msa0574170:five_prime_UTR 30.0%
!!! GTTAACTGATTTTGATTCCA+AGG - chr4_1:77541335-77541354 None:intergenic 30.0%
! TTCTAAAAGAGGGGATTTAA+AGG + chr4_1:77541486-77541505 Msa0574170:five_prime_UTR 30.0%
TCTAAAAGAGGGGATTTAAA+GGG + chr4_1:77541487-77541506 Msa0574170:five_prime_UTR 30.0%
GGATATTGCTGAATCAAATA+AGG - chr4_1:77541521-77541540 None:intergenic 30.0%
! TGATAGTGACATGAATGATA+AGG + chr4_1:77541777-77541796 Msa0574170:five_prime_UTR 30.0%
ACATGAATGATAAGGATAAG+AGG + chr4_1:77541785-77541804 Msa0574170:five_prime_UTR 30.0%
AATGATAAGGATAAGAGGAA+TGG + chr4_1:77541790-77541809 Msa0574170:five_prime_UTR 30.0%
ATGATAAGGATAAGAGGAAT+GGG + chr4_1:77541791-77541810 Msa0574170:five_prime_UTR 30.0%
AAGAAATATGCACTACAAAG+AGG + chr4_1:77541835-77541854 Msa0574170:five_prime_UTR 30.0%
TGAGAATATGTGTATGAGTA+AGG + chr4_1:77541870-77541889 Msa0574170:five_prime_UTR 30.0%
!! AGATTTTAGGGATAAATCCT+AGG + chr4_1:77541986-77542005 Msa0574170:five_prime_UTR 30.0%
TTACAGTAAGTAGATAAAGC+AGG - chr4_1:77542027-77542046 None:intergenic 30.0%
TTCTTAGTTTATGCAACACA+TGG - chr4_1:77542179-77542198 None:intergenic 30.0%
TAAGAGTGGGAAAAAGAAAA+TGG + chr4_1:77542268-77542287 Msa0574170:five_prime_UTR 30.0%
AAGAGTGGGAAAAAGAAAAT+GGG + chr4_1:77542269-77542288 Msa0574170:five_prime_UTR 30.0%
GGAAAAAGAAAATGGGATAA+AGG + chr4_1:77542276-77542295 Msa0574170:five_prime_UTR 30.0%
ATGGGATAAAGGATTGATAA+TGG + chr4_1:77542287-77542306 Msa0574170:five_prime_UTR 30.0%
ATGGAAGCAATGCAAAATAA+CGG + chr4_1:77542306-77542325 Msa0574170:five_prime_UTR 30.0%
TTTCTCATTGCTTATAGCAA+TGG - chr4_1:77542490-77542509 None:intergenic 30.0%
AGTTTCTTACTTGAAATGTC+TGG - chr4_1:77542524-77542543 None:intergenic 30.0%
GGTTATTTATGTTTAGTAGC+TGG + chr4_1:77542646-77542665 Msa0574170:intron 30.0%
!! CAGAAATGGATTGAATACTA+TGG + chr4_1:77542844-77542863 Msa0574170:intron 30.0%
ATCAATGACTGCAATTAGAA+CGG - chr4_1:77542989-77543008 None:intergenic 30.0%
TCTAAAAGTTTCACATCAGA+TGG - chr4_1:77543018-77543037 None:intergenic 30.0%
TAAGTGGAAACTTCTTTGAA+GGG - chr4_1:77543075-77543094 None:intergenic 30.0%
ATAAGTGGAAACTTCTTTGA+AGG - chr4_1:77543076-77543095 None:intergenic 30.0%
CTATGATGCAAAACAATAAG+TGG - chr4_1:77543091-77543110 None:intergenic 30.0%
!! CACTTATTGTTTTGCATCAT+AGG + chr4_1:77543089-77543108 Msa0574170:CDS 30.0%
GATGATTGGTATGAACAAAA+TGG + chr4_1:77543211-77543230 Msa0574170:intron 30.0%
CATTTACAAACATGTGTTTC+AGG + chr4_1:77543332-77543351 Msa0574170:intron 30.0%
AGATCATTTGTTTCAACTTC+TGG + chr4_1:77543414-77543433 Msa0574170:CDS 30.0%
GATCATTTGTTTCAACTTCT+GGG + chr4_1:77543415-77543434 Msa0574170:CDS 30.0%
!! TCCAAATTTTAGGTACGATT+CGG + chr4_1:77543663-77543682 Msa0574170:intron 30.0%
TCATTAAGTTCTGCTTCAAT+TGG - chr4_1:77543932-77543951 None:intergenic 30.0%
! GTATCTAGTTCACATTTACA+AGG + chr4_1:77544032-77544051 Msa0574170:exon 30.0%
ACATTTACAAGGTTACCTTT+AGG + chr4_1:77544043-77544062 Msa0574170:three_prime_UTR 30.0%
GATATGGAATCTTCATACTA+TGG + chr4_1:77544068-77544087 Msa0574170:three_prime_UTR 30.0%
CTAATCAAAGGAAAAGAAAG+TGG - chr4_1:77544406-77544425 None:intergenic 30.0%
! TGATTTTTGTACGATTCTTG+AGG - chr4_1:77544539-77544558 None:intergenic 30.0%
GTACTTGTAAGTTGTAACAA+CGG - chr4_1:77540975-77540994 None:intergenic 30.0%
ATACGATAAGGCAAATGTAA+TGG + chr4_1:77541051-77541070 Msa0574170:five_prime_UTR 30.0%
GTTGAAATTGATTGAAGTGA+AGG - chr4_1:77541179-77541198 None:intergenic 30.0%
TTCATCTCATACTGACAAAA+AGG + chr4_1:77541306-77541325 Msa0574170:five_prime_UTR 30.0%
!!! GTTAACTGATTTTGATTCCA+AGG - chr4_1:77541335-77541354 None:intergenic 30.0%
! TTCTAAAAGAGGGGATTTAA+AGG + chr4_1:77541486-77541505 Msa0574170:five_prime_UTR 30.0%
TCTAAAAGAGGGGATTTAAA+GGG + chr4_1:77541487-77541506 Msa0574170:five_prime_UTR 30.0%
GGATATTGCTGAATCAAATA+AGG - chr4_1:77541521-77541540 None:intergenic 30.0%
! TGATAGTGACATGAATGATA+AGG + chr4_1:77541777-77541796 Msa0574170:five_prime_UTR 30.0%
ACATGAATGATAAGGATAAG+AGG + chr4_1:77541785-77541804 Msa0574170:five_prime_UTR 30.0%
AATGATAAGGATAAGAGGAA+TGG + chr4_1:77541790-77541809 Msa0574170:five_prime_UTR 30.0%
ATGATAAGGATAAGAGGAAT+GGG + chr4_1:77541791-77541810 Msa0574170:five_prime_UTR 30.0%
AAGAAATATGCACTACAAAG+AGG + chr4_1:77541835-77541854 Msa0574170:five_prime_UTR 30.0%
TGAGAATATGTGTATGAGTA+AGG + chr4_1:77541870-77541889 Msa0574170:five_prime_UTR 30.0%
!! AGATTTTAGGGATAAATCCT+AGG + chr4_1:77541986-77542005 Msa0574170:five_prime_UTR 30.0%
TTACAGTAAGTAGATAAAGC+AGG - chr4_1:77542027-77542046 None:intergenic 30.0%
TTCTTAGTTTATGCAACACA+TGG - chr4_1:77542179-77542198 None:intergenic 30.0%
TAAGAGTGGGAAAAAGAAAA+TGG + chr4_1:77542268-77542287 Msa0574170:five_prime_UTR 30.0%
AAGAGTGGGAAAAAGAAAAT+GGG + chr4_1:77542269-77542288 Msa0574170:five_prime_UTR 30.0%
GGAAAAAGAAAATGGGATAA+AGG + chr4_1:77542276-77542295 Msa0574170:five_prime_UTR 30.0%
ATGGGATAAAGGATTGATAA+TGG + chr4_1:77542287-77542306 Msa0574170:five_prime_UTR 30.0%
ATGGAAGCAATGCAAAATAA+CGG + chr4_1:77542306-77542325 Msa0574170:five_prime_UTR 30.0%
TTTCTCATTGCTTATAGCAA+TGG - chr4_1:77542490-77542509 None:intergenic 30.0%
AGTTTCTTACTTGAAATGTC+TGG - chr4_1:77542524-77542543 None:intergenic 30.0%
GGTTATTTATGTTTAGTAGC+TGG + chr4_1:77542646-77542665 Msa0574170:intron 30.0%
!! CAGAAATGGATTGAATACTA+TGG + chr4_1:77542844-77542863 Msa0574170:intron 30.0%
ATCAATGACTGCAATTAGAA+CGG - chr4_1:77542989-77543008 None:intergenic 30.0%
TCTAAAAGTTTCACATCAGA+TGG - chr4_1:77543018-77543037 None:intergenic 30.0%
TAAGTGGAAACTTCTTTGAA+GGG - chr4_1:77543075-77543094 None:intergenic 30.0%
ATAAGTGGAAACTTCTTTGA+AGG - chr4_1:77543076-77543095 None:intergenic 30.0%
CTATGATGCAAAACAATAAG+TGG - chr4_1:77543091-77543110 None:intergenic 30.0%
!! CACTTATTGTTTTGCATCAT+AGG + chr4_1:77543089-77543108 Msa0574170:CDS 30.0%
GATGATTGGTATGAACAAAA+TGG + chr4_1:77543211-77543230 Msa0574170:intron 30.0%
CATTTACAAACATGTGTTTC+AGG + chr4_1:77543332-77543351 Msa0574170:intron 30.0%
AGATCATTTGTTTCAACTTC+TGG + chr4_1:77543414-77543433 Msa0574170:CDS 30.0%
GATCATTTGTTTCAACTTCT+GGG + chr4_1:77543415-77543434 Msa0574170:CDS 30.0%
!! TCCAAATTTTAGGTACGATT+CGG + chr4_1:77543663-77543682 Msa0574170:intron 30.0%
TCATTAAGTTCTGCTTCAAT+TGG - chr4_1:77543932-77543951 None:intergenic 30.0%
! GTATCTAGTTCACATTTACA+AGG + chr4_1:77544032-77544051 Msa0574170:exon 30.0%
ACATTTACAAGGTTACCTTT+AGG + chr4_1:77544043-77544062 Msa0574170:three_prime_UTR 30.0%
GATATGGAATCTTCATACTA+TGG + chr4_1:77544068-77544087 Msa0574170:three_prime_UTR 30.0%
CTAATCAAAGGAAAAGAAAG+TGG - chr4_1:77544406-77544425 None:intergenic 30.0%
! TGATTTTTGTACGATTCTTG+AGG - chr4_1:77544539-77544558 None:intergenic 30.0%
TGTTTGTGTTGCAGAGATTA+AGG - chr4_1:77540951-77540970 None:intergenic 35.0%
TACATTTGCCTTATCGTATG+TGG - chr4_1:77541050-77541069 None:intergenic 35.0%
! CCATAATTTGAGAGTGCAAA+AGG - chr4_1:77541148-77541167 None:intergenic 35.0%
! CCTTTTGCACTCTCAAATTA+TGG + chr4_1:77541145-77541164 Msa0574170:five_prime_UTR 35.0%
!! GGATTGAAGGTTGTTTTCTT+GGG - chr4_1:77541201-77541220 None:intergenic 35.0%
!! TGGATTGAAGGTTGTTTTCT+TGG - chr4_1:77541202-77541221 None:intergenic 35.0%
!! TTTTGGTTGTTGTGTCAAGT+GGG - chr4_1:77541243-77541262 None:intergenic 35.0%
!!! TTTTTGGTTGTTGTGTCAAG+TGG - chr4_1:77541244-77541263 None:intergenic 35.0%
TGACACAACAACCAAAAACT+CGG + chr4_1:77541246-77541265 Msa0574170:five_prime_UTR 35.0%
! AAACCTTCTTACCGAGTTTT+TGG - chr4_1:77541260-77541279 None:intergenic 35.0%
TCAGTATGAGATGAAGAAGA+AGG - chr4_1:77541301-77541320 None:intergenic 35.0%
TACTGACAAAAAGGTTTCCT+TGG + chr4_1:77541315-77541334 Msa0574170:five_prime_UTR 35.0%
AATCTTCTTCTTCTTCTCGA+AGG - chr4_1:77541419-77541438 None:intergenic 35.0%
CGAGAAGAAGAAGAAGATTA+AGG + chr4_1:77541420-77541439 Msa0574170:five_prime_UTR 35.0%
!! TTGGATCAGTGTTCTAAAAG+AGG + chr4_1:77541475-77541494 Msa0574170:five_prime_UTR 35.0%
!! TGGATCAGTGTTCTAAAAGA+GGG + chr4_1:77541476-77541495 Msa0574170:five_prime_UTR 35.0%
TTTGATTCAGCAATATCCCA+AGG + chr4_1:77541523-77541542 Msa0574170:five_prime_UTR 35.0%
! ATATCCCAAGGTGTTAAACT+AGG + chr4_1:77541535-77541554 Msa0574170:five_prime_UTR 35.0%
TACTAGAACTTTGAATGCAC+AGG + chr4_1:77541639-77541658 Msa0574170:five_prime_UTR 35.0%
TAGGGATAAATCCTAGGTTA+AGG + chr4_1:77541992-77542011 Msa0574170:five_prime_UTR 35.0%
AATCCTAGGTTAAGGTCTTA+TGG + chr4_1:77542000-77542019 Msa0574170:five_prime_UTR 35.0%
! TGATGTTGAAAAGCACATGT+TGG + chr4_1:77542071-77542090 Msa0574170:five_prime_UTR 35.0%
ATAAACTAAGAAGCAGTGTG+AGG + chr4_1:77542187-77542206 Msa0574170:five_prime_UTR 35.0%
!! CTGCTGATTTGATTGTTGAT+TGG + chr4_1:77542226-77542245 Msa0574170:five_prime_UTR 35.0%
!! AGCAAAATCGCTTTAAGAGT+GGG + chr4_1:77542255-77542274 Msa0574170:five_prime_UTR 35.0%
GATGGAATGTGTAAATGTTG+TGG + chr4_1:77542399-77542418 Msa0574170:five_prime_UTR 35.0%
TAAATGTTGTGGAGTGCAAT+TGG + chr4_1:77542410-77542429 Msa0574170:five_prime_UTR 35.0%
GCAAAATTCTCAGTTTCAAC+AGG - chr4_1:77542453-77542472 None:intergenic 35.0%
!!! TTCGCGAGTCTTTTTTTAAG+TGG + chr4_1:77542603-77542622 Msa0574170:intron 35.0%
GTTAGCACAGTTCAAATAGA+TGG + chr4_1:77542625-77542644 Msa0574170:intron 35.0%
GTGATTAACGCTGTTGAAAT+AGG - chr4_1:77542715-77542734 None:intergenic 35.0%
!! ACTTCTTTGAAGGGAGTTTT+TGG - chr4_1:77543066-77543085 None:intergenic 35.0%
AAGGGATAAACCAATCAACA+AGG + chr4_1:77543129-77543148 Msa0574170:CDS 35.0%
TAAACCAATCAACAAGGCAT+TGG + chr4_1:77543135-77543154 Msa0574170:CDS 35.0%
CAATCATCATTTGATCCTGT+AGG - chr4_1:77543199-77543218 None:intergenic 35.0%
CTACAGGATCAAATGATGAT+TGG + chr4_1:77543197-77543216 Msa0574170:CDS 35.0%
ATGATCTCTCATCTCATCAT+TGG - chr4_1:77543401-77543420 None:intergenic 35.0%
ACCGAATCGTACCTAAAATT+TGG - chr4_1:77543667-77543686 None:intergenic 35.0%
TGAATAACAACAGAACAAGG+AGG - chr4_1:77543723-77543742 None:intergenic 35.0%
! TCCTTGTTCTGTTGTTATTC+AGG + chr4_1:77543722-77543741 Msa0574170:CDS 35.0%
ACCTGAATAACAACAGAACA+AGG - chr4_1:77543726-77543745 None:intergenic 35.0%
TTCAGGTAAGAAACATACAC+TGG + chr4_1:77543739-77543758 Msa0574170:intron 35.0%
ATGATGAAGCAGAAAGAAGA+TGG + chr4_1:77543948-77543967 Msa0574170:CDS 35.0%
GACTCTTCAACAACATACAA+AGG + chr4_1:77544010-77544029 Msa0574170:CDS 35.0%
AAGATTCCATATCGTCCTAA+AGG - chr4_1:77544061-77544080 None:intergenic 35.0%
! TATGAGTTGGCTGTATATCA+TGG - chr4_1:77544094-77544113 None:intergenic 35.0%
! TCACAATTGATCGATTAGCT+TGG + chr4_1:77544352-77544371 Msa0574170:intron 35.0%
GAGGTTTCTCATCTAATCAA+AGG - chr4_1:77544418-77544437 None:intergenic 35.0%
ATGAGAAACCTCTGCAAAAT+GGG + chr4_1:77544426-77544445 Msa0574170:three_prime_UTR 35.0%
TACTAGAAAAGAGTCTGCAA+AGG + chr4_1:77544466-77544485 Msa0574170:three_prime_UTR 35.0%
! CAGTTTAGTTTCATATCGCA+GGG + chr4_1:77544705-77544724 Msa0574170:three_prime_UTR 35.0%
!! TTTTAATTGCTGCTTGCACA+TGG + chr4_1:77544779-77544798 Msa0574170:three_prime_UTR 35.0%
!! ACTCAATGCGCTGATTAATA+TGG - chr4_1:77544895-77544914 None:intergenic 35.0%
TGTTTGTGTTGCAGAGATTA+AGG - chr4_1:77540951-77540970 None:intergenic 35.0%
TACATTTGCCTTATCGTATG+TGG - chr4_1:77541050-77541069 None:intergenic 35.0%
! CCATAATTTGAGAGTGCAAA+AGG - chr4_1:77541148-77541167 None:intergenic 35.0%
! CCTTTTGCACTCTCAAATTA+TGG + chr4_1:77541145-77541164 Msa0574170:five_prime_UTR 35.0%
!! GGATTGAAGGTTGTTTTCTT+GGG - chr4_1:77541201-77541220 None:intergenic 35.0%
!! TGGATTGAAGGTTGTTTTCT+TGG - chr4_1:77541202-77541221 None:intergenic 35.0%
!! TTTTGGTTGTTGTGTCAAGT+GGG - chr4_1:77541243-77541262 None:intergenic 35.0%
!!! TTTTTGGTTGTTGTGTCAAG+TGG - chr4_1:77541244-77541263 None:intergenic 35.0%
TGACACAACAACCAAAAACT+CGG + chr4_1:77541246-77541265 Msa0574170:five_prime_UTR 35.0%
! AAACCTTCTTACCGAGTTTT+TGG - chr4_1:77541260-77541279 None:intergenic 35.0%
TCAGTATGAGATGAAGAAGA+AGG - chr4_1:77541301-77541320 None:intergenic 35.0%
TACTGACAAAAAGGTTTCCT+TGG + chr4_1:77541315-77541334 Msa0574170:five_prime_UTR 35.0%
AATCTTCTTCTTCTTCTCGA+AGG - chr4_1:77541419-77541438 None:intergenic 35.0%
CGAGAAGAAGAAGAAGATTA+AGG + chr4_1:77541420-77541439 Msa0574170:five_prime_UTR 35.0%
!! TTGGATCAGTGTTCTAAAAG+AGG + chr4_1:77541475-77541494 Msa0574170:five_prime_UTR 35.0%
!! TGGATCAGTGTTCTAAAAGA+GGG + chr4_1:77541476-77541495 Msa0574170:five_prime_UTR 35.0%
TTTGATTCAGCAATATCCCA+AGG + chr4_1:77541523-77541542 Msa0574170:five_prime_UTR 35.0%
! ATATCCCAAGGTGTTAAACT+AGG + chr4_1:77541535-77541554 Msa0574170:five_prime_UTR 35.0%
TACTAGAACTTTGAATGCAC+AGG + chr4_1:77541639-77541658 Msa0574170:five_prime_UTR 35.0%
TAGGGATAAATCCTAGGTTA+AGG + chr4_1:77541992-77542011 Msa0574170:five_prime_UTR 35.0%
AATCCTAGGTTAAGGTCTTA+TGG + chr4_1:77542000-77542019 Msa0574170:five_prime_UTR 35.0%
! TGATGTTGAAAAGCACATGT+TGG + chr4_1:77542071-77542090 Msa0574170:five_prime_UTR 35.0%
ATAAACTAAGAAGCAGTGTG+AGG + chr4_1:77542187-77542206 Msa0574170:five_prime_UTR 35.0%
!! CTGCTGATTTGATTGTTGAT+TGG + chr4_1:77542226-77542245 Msa0574170:five_prime_UTR 35.0%
!! AGCAAAATCGCTTTAAGAGT+GGG + chr4_1:77542255-77542274 Msa0574170:five_prime_UTR 35.0%
GATGGAATGTGTAAATGTTG+TGG + chr4_1:77542399-77542418 Msa0574170:five_prime_UTR 35.0%
TAAATGTTGTGGAGTGCAAT+TGG + chr4_1:77542410-77542429 Msa0574170:five_prime_UTR 35.0%
GCAAAATTCTCAGTTTCAAC+AGG - chr4_1:77542453-77542472 None:intergenic 35.0%
!!! TTCGCGAGTCTTTTTTTAAG+TGG + chr4_1:77542603-77542622 Msa0574170:intron 35.0%
GTTAGCACAGTTCAAATAGA+TGG + chr4_1:77542625-77542644 Msa0574170:intron 35.0%
GTGATTAACGCTGTTGAAAT+AGG - chr4_1:77542715-77542734 None:intergenic 35.0%
!! ACTTCTTTGAAGGGAGTTTT+TGG - chr4_1:77543066-77543085 None:intergenic 35.0%
AAGGGATAAACCAATCAACA+AGG + chr4_1:77543129-77543148 Msa0574170:CDS 35.0%
TAAACCAATCAACAAGGCAT+TGG + chr4_1:77543135-77543154 Msa0574170:CDS 35.0%
CAATCATCATTTGATCCTGT+AGG - chr4_1:77543199-77543218 None:intergenic 35.0%
CTACAGGATCAAATGATGAT+TGG + chr4_1:77543197-77543216 Msa0574170:CDS 35.0%
ATGATCTCTCATCTCATCAT+TGG - chr4_1:77543401-77543420 None:intergenic 35.0%
ACCGAATCGTACCTAAAATT+TGG - chr4_1:77543667-77543686 None:intergenic 35.0%
TGAATAACAACAGAACAAGG+AGG - chr4_1:77543723-77543742 None:intergenic 35.0%
! TCCTTGTTCTGTTGTTATTC+AGG + chr4_1:77543722-77543741 Msa0574170:CDS 35.0%
ACCTGAATAACAACAGAACA+AGG - chr4_1:77543726-77543745 None:intergenic 35.0%
TTCAGGTAAGAAACATACAC+TGG + chr4_1:77543739-77543758 Msa0574170:intron 35.0%
ATGATGAAGCAGAAAGAAGA+TGG + chr4_1:77543948-77543967 Msa0574170:CDS 35.0%
GACTCTTCAACAACATACAA+AGG + chr4_1:77544010-77544029 Msa0574170:CDS 35.0%
AAGATTCCATATCGTCCTAA+AGG - chr4_1:77544061-77544080 None:intergenic 35.0%
! TATGAGTTGGCTGTATATCA+TGG - chr4_1:77544094-77544113 None:intergenic 35.0%
! TCACAATTGATCGATTAGCT+TGG + chr4_1:77544352-77544371 Msa0574170:intron 35.0%
GAGGTTTCTCATCTAATCAA+AGG - chr4_1:77544418-77544437 None:intergenic 35.0%
ATGAGAAACCTCTGCAAAAT+GGG + chr4_1:77544426-77544445 Msa0574170:three_prime_UTR 35.0%
TACTAGAAAAGAGTCTGCAA+AGG + chr4_1:77544466-77544485 Msa0574170:three_prime_UTR 35.0%
! CAGTTTAGTTTCATATCGCA+GGG + chr4_1:77544705-77544724 Msa0574170:three_prime_UTR 35.0%
!! TTTTAATTGCTGCTTGCACA+TGG + chr4_1:77544779-77544798 Msa0574170:three_prime_UTR 35.0%
!! ACTCAATGCGCTGATTAATA+TGG - chr4_1:77544895-77544914 None:intergenic 35.0%
TTTAGCAGCCACATACGATA+AGG + chr4_1:77541039-77541058 Msa0574170:five_prime_UTR 40.0%
! TTTGAGAGTGCAAAAGGCTT+GGG - chr4_1:77541142-77541161 None:intergenic 40.0%
! ATTTGAGAGTGCAAAAGGCT+TGG - chr4_1:77541143-77541162 None:intergenic 40.0%
CGTGAAGAACATTGGATTGA+AGG - chr4_1:77541214-77541233 None:intergenic 40.0%
TTTGGTTGTTGTGTCAAGTG+GGG - chr4_1:77541242-77541261 None:intergenic 40.0%
CAACCAAAAACTCGGTAAGA+AGG + chr4_1:77541254-77541273 Msa0574170:five_prime_UTR 40.0%
! AGAAGGAGAAGAGGTTTTCT+TGG - chr4_1:77541284-77541303 None:intergenic 40.0%
AGATGAAGAAGAAGGAGAAG+AGG - chr4_1:77541293-77541312 None:intergenic 40.0%
TAACAGCAGTACCAGTTACA+CGG + chr4_1:77541351-77541370 Msa0574170:five_prime_UTR 40.0%
TTTCTCAACAACCGTGTAAC+TGG - chr4_1:77541365-77541384 None:intergenic 40.0%
!! AAACCCGCAATTTAGCTTGT+GGG - chr4_1:77541453-77541472 None:intergenic 40.0%
AGCTAAATTGCGGGTTTCTT+TGG + chr4_1:77541456-77541475 Msa0574170:five_prime_UTR 40.0%
!! GGATCAGTGTTCTAAAAGAG+GGG + chr4_1:77541477-77541496 Msa0574170:five_prime_UTR 40.0%
CTGTCCTAGTTTAACACCTT+GGG - chr4_1:77541542-77541561 None:intergenic 40.0%
CTTTGTTCTTCTGCAGCTAT+TGG + chr4_1:77541586-77541605 Msa0574170:five_prime_UTR 40.0%
GGATAAGAGGAATGGGATAA+TGG + chr4_1:77541798-77541817 Msa0574170:five_prime_UTR 40.0%
ATTGACATCTGTGGCTAGAA+TGG + chr4_1:77541912-77541931 Msa0574170:five_prime_UTR 40.0%
! GAAAAGCACATGTTGGAACA+TGG + chr4_1:77542078-77542097 Msa0574170:five_prime_UTR 40.0%
TTGAGAGTAAGCATAAGAGC+TGG + chr4_1:77542135-77542154 Msa0574170:five_prime_UTR 40.0%
!! GAGCAAAATCGCTTTAAGAG+TGG + chr4_1:77542254-77542273 Msa0574170:five_prime_UTR 40.0%
GAAGCAATGCAAAATAACGG+TGG + chr4_1:77542309-77542328 Msa0574170:five_prime_UTR 40.0%
CAAGTTCTTCAAACCAGTGT+AGG + chr4_1:77542372-77542391 Msa0574170:five_prime_UTR 40.0%
CAAACCAGTGTAGGAAATGA+TGG + chr4_1:77542381-77542400 Msa0574170:five_prime_UTR 40.0%
CATTCCATCATTTCCTACAC+TGG - chr4_1:77542388-77542407 None:intergenic 40.0%
GCATCTATCACTGCTTCAAA+AGG - chr4_1:77542871-77542890 None:intergenic 40.0%
GTGATAGATGCTGCAAATGT+AGG + chr4_1:77542880-77542899 Msa0574170:five_prime_UTR 40.0%
! ATTCAGTAACTTGCCTTGGA+TGG - chr4_1:77542931-77542950 None:intergenic 40.0%
TGCAATTAGAACGGAATGCA+AGG - chr4_1:77542980-77542999 None:intergenic 40.0%
TTGCATCATAGGCGTATCAA+AGG + chr4_1:77543100-77543119 Msa0574170:CDS 40.0%
GCGTATCAAAGGAGACAAAA+GGG + chr4_1:77543111-77543130 Msa0574170:CDS 40.0%
! TCAACCAATGCCTTGTTGAT+TGG - chr4_1:77543142-77543161 None:intergenic 40.0%
!! TCAACAAGGCATTGGTTGAT+AGG + chr4_1:77543143-77543162 Msa0574170:CDS 40.0%
ATACTCTATGCAACACCTAC+AGG + chr4_1:77543181-77543200 Msa0574170:CDS 40.0%
! CAAACATGTGTTTCAGGTAC+TGG + chr4_1:77543338-77543357 Msa0574170:intron 40.0%
TGATGCCTTTCTTTCCACTT+GGG - chr4_1:77543454-77543473 None:intergenic 40.0%
ATAACAACAGAACAAGGAGG+CGG - chr4_1:77543720-77543739 None:intergenic 40.0%
AACATGACAATTGTGGTTGC+AGG + chr4_1:77543880-77543899 Msa0574170:intron 40.0%
CTTCAATTGGAATATGCCAG+TGG - chr4_1:77543919-77543938 None:intergenic 40.0%
GTGTATCACACGTGCTAAAT+TGG + chr4_1:77543973-77543992 Msa0574170:CDS 40.0%
GCTAAATTGGACATGGTTAG+TGG + chr4_1:77543986-77544005 Msa0574170:CDS 40.0%
!! AGGTTACCTTTAGGACGATA+TGG + chr4_1:77544052-77544071 Msa0574170:three_prime_UTR 40.0%
AAAAGAAAGTGGGAAGTGAG+GGG - chr4_1:77544395-77544414 None:intergenic 40.0%
GAAAAGAAAGTGGGAAGTGA+GGG - chr4_1:77544396-77544415 None:intergenic 40.0%
GATGAGAAACCTCTGCAAAA+TGG + chr4_1:77544425-77544444 Msa0574170:intron 40.0%
TGAGAAACCTCTGCAAAATG+GGG + chr4_1:77544427-77544446 Msa0574170:three_prime_UTR 40.0%
CTCGTTATTATCCGAACTTG+AGG + chr4_1:77544569-77544588 Msa0574170:three_prime_UTR 40.0%
CCTGCGATATGAAACTAAAC+TGG - chr4_1:77544707-77544726 None:intergenic 40.0%
! CCAGTTTAGTTTCATATCGC+AGG + chr4_1:77544704-77544723 Msa0574170:three_prime_UTR 40.0%
TATCGCAGGGAGAAATACAA+AGG + chr4_1:77544718-77544737 Msa0574170:three_prime_UTR 40.0%
AGGGAGAAATACAAAGGCTA+AGG + chr4_1:77544724-77544743 Msa0574170:three_prime_UTR 40.0%
TTTAGCAGCCACATACGATA+AGG + chr4_1:77541039-77541058 Msa0574170:five_prime_UTR 40.0%
! TTTGAGAGTGCAAAAGGCTT+GGG - chr4_1:77541142-77541161 None:intergenic 40.0%
! ATTTGAGAGTGCAAAAGGCT+TGG - chr4_1:77541143-77541162 None:intergenic 40.0%
CGTGAAGAACATTGGATTGA+AGG - chr4_1:77541214-77541233 None:intergenic 40.0%
TTTGGTTGTTGTGTCAAGTG+GGG - chr4_1:77541242-77541261 None:intergenic 40.0%
CAACCAAAAACTCGGTAAGA+AGG + chr4_1:77541254-77541273 Msa0574170:five_prime_UTR 40.0%
! AGAAGGAGAAGAGGTTTTCT+TGG - chr4_1:77541284-77541303 None:intergenic 40.0%
AGATGAAGAAGAAGGAGAAG+AGG - chr4_1:77541293-77541312 None:intergenic 40.0%
TAACAGCAGTACCAGTTACA+CGG + chr4_1:77541351-77541370 Msa0574170:five_prime_UTR 40.0%
TTTCTCAACAACCGTGTAAC+TGG - chr4_1:77541365-77541384 None:intergenic 40.0%
!! AAACCCGCAATTTAGCTTGT+GGG - chr4_1:77541453-77541472 None:intergenic 40.0%
AGCTAAATTGCGGGTTTCTT+TGG + chr4_1:77541456-77541475 Msa0574170:five_prime_UTR 40.0%
!! GGATCAGTGTTCTAAAAGAG+GGG + chr4_1:77541477-77541496 Msa0574170:five_prime_UTR 40.0%
CTGTCCTAGTTTAACACCTT+GGG - chr4_1:77541542-77541561 None:intergenic 40.0%
CTTTGTTCTTCTGCAGCTAT+TGG + chr4_1:77541586-77541605 Msa0574170:five_prime_UTR 40.0%
GGATAAGAGGAATGGGATAA+TGG + chr4_1:77541798-77541817 Msa0574170:five_prime_UTR 40.0%
ATTGACATCTGTGGCTAGAA+TGG + chr4_1:77541912-77541931 Msa0574170:five_prime_UTR 40.0%
! GAAAAGCACATGTTGGAACA+TGG + chr4_1:77542078-77542097 Msa0574170:five_prime_UTR 40.0%
TTGAGAGTAAGCATAAGAGC+TGG + chr4_1:77542135-77542154 Msa0574170:five_prime_UTR 40.0%
!! GAGCAAAATCGCTTTAAGAG+TGG + chr4_1:77542254-77542273 Msa0574170:five_prime_UTR 40.0%
GAAGCAATGCAAAATAACGG+TGG + chr4_1:77542309-77542328 Msa0574170:five_prime_UTR 40.0%
CAAGTTCTTCAAACCAGTGT+AGG + chr4_1:77542372-77542391 Msa0574170:five_prime_UTR 40.0%
CAAACCAGTGTAGGAAATGA+TGG + chr4_1:77542381-77542400 Msa0574170:five_prime_UTR 40.0%
CATTCCATCATTTCCTACAC+TGG - chr4_1:77542388-77542407 None:intergenic 40.0%
GCATCTATCACTGCTTCAAA+AGG - chr4_1:77542871-77542890 None:intergenic 40.0%
GTGATAGATGCTGCAAATGT+AGG + chr4_1:77542880-77542899 Msa0574170:five_prime_UTR 40.0%
! ATTCAGTAACTTGCCTTGGA+TGG - chr4_1:77542931-77542950 None:intergenic 40.0%
TGCAATTAGAACGGAATGCA+AGG - chr4_1:77542980-77542999 None:intergenic 40.0%
TTGCATCATAGGCGTATCAA+AGG + chr4_1:77543100-77543119 Msa0574170:CDS 40.0%
GCGTATCAAAGGAGACAAAA+GGG + chr4_1:77543111-77543130 Msa0574170:CDS 40.0%
! TCAACCAATGCCTTGTTGAT+TGG - chr4_1:77543142-77543161 None:intergenic 40.0%
!! TCAACAAGGCATTGGTTGAT+AGG + chr4_1:77543143-77543162 Msa0574170:CDS 40.0%
ATACTCTATGCAACACCTAC+AGG + chr4_1:77543181-77543200 Msa0574170:CDS 40.0%
! CAAACATGTGTTTCAGGTAC+TGG + chr4_1:77543338-77543357 Msa0574170:intron 40.0%
TGATGCCTTTCTTTCCACTT+GGG - chr4_1:77543454-77543473 None:intergenic 40.0%
ATAACAACAGAACAAGGAGG+CGG - chr4_1:77543720-77543739 None:intergenic 40.0%
AACATGACAATTGTGGTTGC+AGG + chr4_1:77543880-77543899 Msa0574170:intron 40.0%
CTTCAATTGGAATATGCCAG+TGG - chr4_1:77543919-77543938 None:intergenic 40.0%
GTGTATCACACGTGCTAAAT+TGG + chr4_1:77543973-77543992 Msa0574170:CDS 40.0%
GCTAAATTGGACATGGTTAG+TGG + chr4_1:77543986-77544005 Msa0574170:CDS 40.0%
!! AGGTTACCTTTAGGACGATA+TGG + chr4_1:77544052-77544071 Msa0574170:three_prime_UTR 40.0%
AAAAGAAAGTGGGAAGTGAG+GGG - chr4_1:77544395-77544414 None:intergenic 40.0%
GAAAAGAAAGTGGGAAGTGA+GGG - chr4_1:77544396-77544415 None:intergenic 40.0%
GATGAGAAACCTCTGCAAAA+TGG + chr4_1:77544425-77544444 Msa0574170:intron 40.0%
TGAGAAACCTCTGCAAAATG+GGG + chr4_1:77544427-77544446 Msa0574170:three_prime_UTR 40.0%
CTCGTTATTATCCGAACTTG+AGG + chr4_1:77544569-77544588 Msa0574170:three_prime_UTR 40.0%
CCTGCGATATGAAACTAAAC+TGG - chr4_1:77544707-77544726 None:intergenic 40.0%
! CCAGTTTAGTTTCATATCGC+AGG + chr4_1:77544704-77544723 Msa0574170:three_prime_UTR 40.0%
TATCGCAGGGAGAAATACAA+AGG + chr4_1:77544718-77544737 Msa0574170:three_prime_UTR 40.0%
AGGGAGAAATACAAAGGCTA+AGG + chr4_1:77544724-77544743 Msa0574170:three_prime_UTR 40.0%
TTGGTTGTTGTGTCAAGTGG+GGG - chr4_1:77541241-77541260 None:intergenic 45.0%
!! AACCCGCAATTTAGCTTGTG+GGG - chr4_1:77541452-77541471 None:intergenic 45.0%
!! GAAACCCGCAATTTAGCTTG+TGG - chr4_1:77541454-77541473 None:intergenic 45.0%
GCTGTCCTAGTTTAACACCT+TGG - chr4_1:77541543-77541562 None:intergenic 45.0%
TGTTCTTCTGCAGCTATTGG+TGG + chr4_1:77541589-77541608 Msa0574170:five_prime_UTR 45.0%
!! TGAAGCAGCATTGACATCTG+TGG + chr4_1:77541903-77541922 Msa0574170:five_prime_UTR 45.0%
!! TGGTGACAAGGCTTTTGAGA+TGG + chr4_1:77541951-77541970 Msa0574170:five_prime_UTR 45.0%
GGACCATAAGACCTTAACCT+AGG - chr4_1:77542006-77542025 None:intergenic 45.0%
CTTCCAACTCAGGTTCTTCA+GGG - chr4_1:77542110-77542129 None:intergenic 45.0%
GCAATGCAAAATAACGGTGG+AGG + chr4_1:77542312-77542331 Msa0574170:five_prime_UTR 45.0%
TGCAAAATAACGGTGGAGGA+TGG + chr4_1:77542316-77542335 Msa0574170:five_prime_UTR 45.0%
GTTGGTTGGGTAAAGGGAAA+TGG + chr4_1:77542349-77542368 Msa0574170:five_prime_UTR 45.0%
AATGTAGGCCTTTACAGCCA+AGG + chr4_1:77542895-77542914 Msa0574170:five_prime_UTR 45.0%
ATGTAGGCCTTTACAGCCAA+GGG + chr4_1:77542896-77542915 Msa0574170:five_prime_UTR 45.0%
TGAACTTCCCTTGGCTGTAA+AGG - chr4_1:77542906-77542925 None:intergenic 45.0%
! CCACATTCAGTAACTTGCCT+TGG - chr4_1:77542935-77542954 None:intergenic 45.0%
CCAAGGCAAGTTACTGAATG+TGG + chr4_1:77542932-77542951 Msa0574170:intron 45.0%
GGCGTATCAAAGGAGACAAA+AGG + chr4_1:77543110-77543129 Msa0574170:CDS 45.0%
!! ACAAGGCATTGGTTGATAGG+TGG + chr4_1:77543146-77543165 Msa0574170:CDS 45.0%
GAAATGACTTCTTCCCCAAG+TGG + chr4_1:77543437-77543456 Msa0574170:CDS 45.0%
TCTTCCCCAAGTGGAAAGAA+AGG + chr4_1:77543446-77543465 Msa0574170:CDS 45.0%
GATGCCTTTCTTTCCACTTG+GGG - chr4_1:77543453-77543472 None:intergenic 45.0%
CTGATGCCTTTCTTTCCACT+TGG - chr4_1:77543455-77543474 None:intergenic 45.0%
!! CAAGTGGAAAGAAAGGCATC+AGG + chr4_1:77543453-77543472 Msa0574170:CDS 45.0%
!! GGAAAGAAAGGCATCAGGTA+TGG + chr4_1:77543458-77543477 Msa0574170:intron 45.0%
TGGTTGCAGGAATCAGAAGA+AGG + chr4_1:77543893-77543912 Msa0574170:intron 45.0%
CACACGTGCTAAATTGGACA+TGG + chr4_1:77543979-77543998 Msa0574170:CDS 45.0%
AAAGAAAGTGGGAAGTGAGG+GGG - chr4_1:77544394-77544413 None:intergenic 45.0%
GGAAAAGAAAGTGGGAAGTG+AGG - chr4_1:77544397-77544416 None:intergenic 45.0%
TTGGTTGTTGTGTCAAGTGG+GGG - chr4_1:77541241-77541260 None:intergenic 45.0%
!! AACCCGCAATTTAGCTTGTG+GGG - chr4_1:77541452-77541471 None:intergenic 45.0%
!! GAAACCCGCAATTTAGCTTG+TGG - chr4_1:77541454-77541473 None:intergenic 45.0%
GCTGTCCTAGTTTAACACCT+TGG - chr4_1:77541543-77541562 None:intergenic 45.0%
TGTTCTTCTGCAGCTATTGG+TGG + chr4_1:77541589-77541608 Msa0574170:five_prime_UTR 45.0%
!! TGAAGCAGCATTGACATCTG+TGG + chr4_1:77541903-77541922 Msa0574170:five_prime_UTR 45.0%
!! TGGTGACAAGGCTTTTGAGA+TGG + chr4_1:77541951-77541970 Msa0574170:five_prime_UTR 45.0%
GGACCATAAGACCTTAACCT+AGG - chr4_1:77542006-77542025 None:intergenic 45.0%
CTTCCAACTCAGGTTCTTCA+GGG - chr4_1:77542110-77542129 None:intergenic 45.0%
GCAATGCAAAATAACGGTGG+AGG + chr4_1:77542312-77542331 Msa0574170:five_prime_UTR 45.0%
TGCAAAATAACGGTGGAGGA+TGG + chr4_1:77542316-77542335 Msa0574170:five_prime_UTR 45.0%
GTTGGTTGGGTAAAGGGAAA+TGG + chr4_1:77542349-77542368 Msa0574170:five_prime_UTR 45.0%
AATGTAGGCCTTTACAGCCA+AGG + chr4_1:77542895-77542914 Msa0574170:five_prime_UTR 45.0%
ATGTAGGCCTTTACAGCCAA+GGG + chr4_1:77542896-77542915 Msa0574170:five_prime_UTR 45.0%
TGAACTTCCCTTGGCTGTAA+AGG - chr4_1:77542906-77542925 None:intergenic 45.0%
! CCACATTCAGTAACTTGCCT+TGG - chr4_1:77542935-77542954 None:intergenic 45.0%
CCAAGGCAAGTTACTGAATG+TGG + chr4_1:77542932-77542951 Msa0574170:intron 45.0%
GGCGTATCAAAGGAGACAAA+AGG + chr4_1:77543110-77543129 Msa0574170:CDS 45.0%
!! ACAAGGCATTGGTTGATAGG+TGG + chr4_1:77543146-77543165 Msa0574170:CDS 45.0%
GAAATGACTTCTTCCCCAAG+TGG + chr4_1:77543437-77543456 Msa0574170:CDS 45.0%
TCTTCCCCAAGTGGAAAGAA+AGG + chr4_1:77543446-77543465 Msa0574170:CDS 45.0%
GATGCCTTTCTTTCCACTTG+GGG - chr4_1:77543453-77543472 None:intergenic 45.0%
CTGATGCCTTTCTTTCCACT+TGG - chr4_1:77543455-77543474 None:intergenic 45.0%
!! CAAGTGGAAAGAAAGGCATC+AGG + chr4_1:77543453-77543472 Msa0574170:CDS 45.0%
!! GGAAAGAAAGGCATCAGGTA+TGG + chr4_1:77543458-77543477 Msa0574170:intron 45.0%
TGGTTGCAGGAATCAGAAGA+AGG + chr4_1:77543893-77543912 Msa0574170:intron 45.0%
CACACGTGCTAAATTGGACA+TGG + chr4_1:77543979-77543998 Msa0574170:CDS 45.0%
AAAGAAAGTGGGAAGTGAGG+GGG - chr4_1:77544394-77544413 None:intergenic 45.0%
GGAAAAGAAAGTGGGAAGTG+AGG - chr4_1:77544397-77544416 None:intergenic 45.0%
AGTTGCAGTTGCAGAGTGAG+GGG - chr4_1:77541085-77541104 None:intergenic 50.0%
CAGTTGCAGTTGCAGAGTGA+GGG - chr4_1:77541086-77541105 None:intergenic 50.0%
TGGTTGTTGTGTCAAGTGGG+GGG - chr4_1:77541240-77541259 None:intergenic 50.0%
!! ACCCGCAATTTAGCTTGTGG+GGG - chr4_1:77541451-77541470 None:intergenic 50.0%
!! GTACCACTTCCACTTTTCGC+AGG - chr4_1:77541622-77541641 None:intergenic 50.0%
! GAATGGGATAATGGTGAGCG+AGG + chr4_1:77541807-77541826 Msa0574170:five_prime_UTR 50.0%
ATCTGTGGCTAGAATGGCCA+TGG + chr4_1:77541918-77541937 Msa0574170:five_prime_UTR 50.0%
ATGGCCATGGCAATGAGTGA+TGG + chr4_1:77541931-77541950 Msa0574170:five_prime_UTR 50.0%
GTCACCATCACTCATTGCCA+TGG - chr4_1:77541938-77541957 None:intergenic 50.0%
! GGCAATGAGTGATGGTGACA+AGG + chr4_1:77541939-77541958 Msa0574170:five_prime_UTR 50.0%
GTACCCTGAAGAACCTGAGT+TGG + chr4_1:77542104-77542123 Msa0574170:five_prime_UTR 50.0%
GCTTCCAACTCAGGTTCTTC+AGG - chr4_1:77542111-77542130 None:intergenic 50.0%
!! CTCAAGAGTGCTTCCAACTC+AGG - chr4_1:77542120-77542139 None:intergenic 50.0%
AATAACGGTGGAGGATGGCA+TGG + chr4_1:77542321-77542340 Msa0574170:five_prime_UTR 50.0%
ATAACGGTGGAGGATGGCAT+GGG + chr4_1:77542322-77542341 Msa0574170:five_prime_UTR 50.0%
!! GGACAGGTTGGTTGGGTAAA+GGG + chr4_1:77542343-77542362 Msa0574170:five_prime_UTR 50.0%
TGGATGGCATGAACTTCCCT+TGG - chr4_1:77542915-77542934 None:intergenic 50.0%
AGGGAAGTTCATGCCATCCA+AGG + chr4_1:77542915-77542934 Msa0574170:five_prime_UTR 50.0%
!! CGATTCGGTTTCTCTGATGC+TGG + chr4_1:77543678-77543697 Msa0574170:CDS 50.0%
AGGAATCAGAAGAAGGCCAC+TGG + chr4_1:77543900-77543919 Msa0574170:intron 50.0%
ACCTCTGCAAAATGGGGAAC+AGG + chr4_1:77544433-77544452 Msa0574170:three_prime_UTR 50.0%
CAACTCTGCAGCCTCAAGTT+CGG - chr4_1:77544583-77544602 None:intergenic 50.0%
! GAGGCTGCAGAGTTGATTAG+TGG + chr4_1:77544588-77544607 Msa0574170:three_prime_UTR 50.0%
AGTTGCAGTTGCAGAGTGAG+GGG - chr4_1:77541085-77541104 None:intergenic 50.0%
CAGTTGCAGTTGCAGAGTGA+GGG - chr4_1:77541086-77541105 None:intergenic 50.0%
TGGTTGTTGTGTCAAGTGGG+GGG - chr4_1:77541240-77541259 None:intergenic 50.0%
!! ACCCGCAATTTAGCTTGTGG+GGG - chr4_1:77541451-77541470 None:intergenic 50.0%
!! GTACCACTTCCACTTTTCGC+AGG - chr4_1:77541622-77541641 None:intergenic 50.0%
! GAATGGGATAATGGTGAGCG+AGG + chr4_1:77541807-77541826 Msa0574170:five_prime_UTR 50.0%
ATCTGTGGCTAGAATGGCCA+TGG + chr4_1:77541918-77541937 Msa0574170:five_prime_UTR 50.0%
ATGGCCATGGCAATGAGTGA+TGG + chr4_1:77541931-77541950 Msa0574170:five_prime_UTR 50.0%
GTCACCATCACTCATTGCCA+TGG - chr4_1:77541938-77541957 None:intergenic 50.0%
! GGCAATGAGTGATGGTGACA+AGG + chr4_1:77541939-77541958 Msa0574170:five_prime_UTR 50.0%
GTACCCTGAAGAACCTGAGT+TGG + chr4_1:77542104-77542123 Msa0574170:five_prime_UTR 50.0%
GCTTCCAACTCAGGTTCTTC+AGG - chr4_1:77542111-77542130 None:intergenic 50.0%
!! CTCAAGAGTGCTTCCAACTC+AGG - chr4_1:77542120-77542139 None:intergenic 50.0%
AATAACGGTGGAGGATGGCA+TGG + chr4_1:77542321-77542340 Msa0574170:five_prime_UTR 50.0%
ATAACGGTGGAGGATGGCAT+GGG + chr4_1:77542322-77542341 Msa0574170:five_prime_UTR 50.0%
!! GGACAGGTTGGTTGGGTAAA+GGG + chr4_1:77542343-77542362 Msa0574170:five_prime_UTR 50.0%
TGGATGGCATGAACTTCCCT+TGG - chr4_1:77542915-77542934 None:intergenic 50.0%
AGGGAAGTTCATGCCATCCA+AGG + chr4_1:77542915-77542934 Msa0574170:five_prime_UTR 50.0%
!! CGATTCGGTTTCTCTGATGC+TGG + chr4_1:77543678-77543697 Msa0574170:CDS 50.0%
AGGAATCAGAAGAAGGCCAC+TGG + chr4_1:77543900-77543919 Msa0574170:intron 50.0%
ACCTCTGCAAAATGGGGAAC+AGG + chr4_1:77544433-77544452 Msa0574170:three_prime_UTR 50.0%
CAACTCTGCAGCCTCAAGTT+CGG - chr4_1:77544583-77544602 None:intergenic 50.0%
! GAGGCTGCAGAGTTGATTAG+TGG + chr4_1:77544588-77544607 Msa0574170:three_prime_UTR 50.0%
GCAGTTGCAGTTGCAGAGTG+AGG - chr4_1:77541087-77541106 None:intergenic 55.0%
GGGGGTTGCGTGAAGAACAT+TGG - chr4_1:77541222-77541241 None:intergenic 55.0%
!! CCGCAATTTAGCTTGTGGGG+GGG - chr4_1:77541449-77541468 None:intergenic 55.0%
CCCCCCCACAAGCTAAATTG+CGG + chr4_1:77541446-77541465 Msa0574170:five_prime_UTR 55.0%
!! CCCGCAATTTAGCTTGTGGG+GGG - chr4_1:77541450-77541469 None:intergenic 55.0%
CCCCCCACAAGCTAAATTGC+GGG + chr4_1:77541447-77541466 Msa0574170:five_prime_UTR 55.0%
GGTCTTCGACCTGCGAAAAG+TGG + chr4_1:77541610-77541629 Msa0574170:five_prime_UTR 55.0%
CGACCTGCGAAAAGTGGAAG+TGG + chr4_1:77541616-77541635 Msa0574170:five_prime_UTR 55.0%
!! ATGGCATGGGACAGGTTGGT+TGG + chr4_1:77542335-77542354 Msa0574170:five_prime_UTR 55.0%
!! TGGCATGGGACAGGTTGGTT+GGG + chr4_1:77542336-77542355 Msa0574170:five_prime_UTR 55.0%
!! GGGACAGGTTGGTTGGGTAA+AGG + chr4_1:77542342-77542361 Msa0574170:five_prime_UTR 55.0%
! GCCTGTTCCCCATTTTGCAG+AGG - chr4_1:77544437-77544456 None:intergenic 55.0%
GCAGTTGCAGTTGCAGAGTG+AGG - chr4_1:77541087-77541106 None:intergenic 55.0%
GGGGGTTGCGTGAAGAACAT+TGG - chr4_1:77541222-77541241 None:intergenic 55.0%
!! CCGCAATTTAGCTTGTGGGG+GGG - chr4_1:77541449-77541468 None:intergenic 55.0%
CCCCCCCACAAGCTAAATTG+CGG + chr4_1:77541446-77541465 Msa0574170:five_prime_UTR 55.0%
!! CCCGCAATTTAGCTTGTGGG+GGG - chr4_1:77541450-77541469 None:intergenic 55.0%
CCCCCCACAAGCTAAATTGC+GGG + chr4_1:77541447-77541466 Msa0574170:five_prime_UTR 55.0%
GGTCTTCGACCTGCGAAAAG+TGG + chr4_1:77541610-77541629 Msa0574170:five_prime_UTR 55.0%
CGACCTGCGAAAAGTGGAAG+TGG + chr4_1:77541616-77541635 Msa0574170:five_prime_UTR 55.0%
!! ATGGCATGGGACAGGTTGGT+TGG + chr4_1:77542335-77542354 Msa0574170:five_prime_UTR 55.0%
!! TGGCATGGGACAGGTTGGTT+GGG + chr4_1:77542336-77542355 Msa0574170:five_prime_UTR 55.0%
!! GGGACAGGTTGGTTGGGTAA+AGG + chr4_1:77542342-77542361 Msa0574170:five_prime_UTR 55.0%
! GCCTGTTCCCCATTTTGCAG+AGG - chr4_1:77544437-77544456 None:intergenic 55.0%
GAGGATGGCATGGGACAGGT+TGG + chr4_1:77542331-77542350 Msa0574170:five_prime_UTR 60.0%
GAGGATGGCATGGGACAGGT+TGG + chr4_1:77542331-77542350 Msa0574170:five_prime_UTR 60.0%
GGTGGAGGATGGCATGGGAC+AGG + chr4_1:77542327-77542346 Msa0574170:five_prime_UTR 65.0%
GGTGGAGGATGGCATGGGAC+AGG + chr4_1:77542327-77542346 Msa0574170:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 77540930 77545036 77540930 ID=Msa0574170;Name=Msa0574170
chr4_1 mRNA 77540930 77545036 77540930 ID=Msa0574170-mRNA-1;Parent=Msa0574170;Name=Msa0574170-mRNA-1;_AED=0.14;_eAED=0.14;_QI=1698|0.83|0.85|1|0.83|0.85|7|720|162
chr4_1 exon 77540930 77542533 77540930 ID=Msa0574170-mRNA-1:exon:27335;Parent=Msa0574170-mRNA-1
chr4_1 exon 77542847 77542936 77542847 ID=Msa0574170-mRNA-1:exon:27336;Parent=Msa0574170-mRNA-1
chr4_1 exon 77543037 77543218 77543037 ID=Msa0574170-mRNA-1:exon:27337;Parent=Msa0574170-mRNA-1
chr4_1 exon 77543371 77543474 77543371 ID=Msa0574170-mRNA-1:exon:27338;Parent=Msa0574170-mRNA-1
chr4_1 exon 77543675 77543743 77543675 ID=Msa0574170-mRNA-1:exon:27339;Parent=Msa0574170-mRNA-1
chr4_1 exon 77543902 77544148 77543902 ID=Msa0574170-mRNA-1:exon:27340;Parent=Msa0574170-mRNA-1
chr4_1 exon 77544426 77545036 77544426 ID=Msa0574170-mRNA-1:exon:27341;Parent=Msa0574170-mRNA-1
chr4_1 five_prime_UTR 77540930 77542533 77540930 ID=Msa0574170-mRNA-1:five_prime_utr;Parent=Msa0574170-mRNA-1
chr4_1 five_prime_UTR 77542847 77542936 77542847 ID=Msa0574170-mRNA-1:five_prime_utr;Parent=Msa0574170-mRNA-1
chr4_1 five_prime_UTR 77543037 77543040 77543037 ID=Msa0574170-mRNA-1:five_prime_utr;Parent=Msa0574170-mRNA-1
chr4_1 CDS 77543041 77543218 77543041 ID=Msa0574170-mRNA-1:cds;Parent=Msa0574170-mRNA-1
chr4_1 CDS 77543371 77543474 77543371 ID=Msa0574170-mRNA-1:cds;Parent=Msa0574170-mRNA-1
chr4_1 CDS 77543675 77543743 77543675 ID=Msa0574170-mRNA-1:cds;Parent=Msa0574170-mRNA-1
chr4_1 CDS 77543902 77544039 77543902 ID=Msa0574170-mRNA-1:cds;Parent=Msa0574170-mRNA-1
chr4_1 three_prime_UTR 77544040 77544148 77544040 ID=Msa0574170-mRNA-1:three_prime_utr;Parent=Msa0574170-mRNA-1
chr4_1 three_prime_UTR 77544426 77545036 77544426 ID=Msa0574170-mRNA-1:three_prime_utr;Parent=Msa0574170-mRNA-1
Gene Sequence

>Msa0574170

ATGCTGTTGTCAATGAATTGCGCCAAAAACTCCCTTCAAAGAAGTTTCCACTTATTGTTTTGCATCATAGGCGTATCAAAGGAGACAAAAGGGATAAACCAATCAACAAGGCATTGGTTGATAGGTGGAATAATGCTAATATACTCTATGCAACACCTACAGGATCAAATGATGATTGCTATAAAATTCAAATGCTTACTTGTTTCCAATGATGAGATGAGAGATCATTTGTTTCAACTTCTGGGAAATGACTTCTTCCCCAAGTGGAAAGAAAGGCATCAGGTACGATTCGGTTTCTCTGATGCTGGTCTTGAGTTTTACATGCCGCCTCCTTGTTCTGTTGTTATTCAGGAATCAGAAGAAGGCCACTGGCATATTCCAATTGAAGCAGAACTTAATGATGAAGCAGAAAGAAGATGGCTGTGTATCACACGTGCTAAATTGGACATGGTTAGTGGAGACTCTTCAACAACATACAAAGGTATCTAG

Protein sequence

>Msa0574170

MLLSMNCAKNSLQRSFHLLFCIIGVSKETKGINQSTRHWLIGGIMLIYSMQHLQDQMMIAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERHQVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELNDEAERRWLCITRAKLDMVSGDSSTTYKGI*