Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573980 | XP_003630754.1 | 89.619 | 289 | 6 | 1 | 1 | 289 | 1 | 265 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573980 | sp|Q6NPC9|BIN3D_ARATH | 54.444 | 270 | 92 | 4 | 21 | 289 | 51 | 290 | 4.23e-99 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573980 | G7L862 | 89.619 | 289 | 6 | 1 | 1 | 289 | 1 | 265 | 0.0 | 524 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054480 | Msa0573980 | 0.801939 | 7.107713e-49 | -8.615850e-47 |
| Msa0529890 | Msa0573980 | 0.803559 | 3.290878e-49 | -8.615850e-47 |
| Msa0573980 | Msa0625720 | 0.806622 | 7.520811e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573980 | MtrunA17_Chr8g0390231 | 89.619 | 289 | 6 | 1 | 1 | 289 | 1 | 265 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573980 | AT5G51130.1 | 54.444 | 270 | 92 | 4 | 21 | 289 | 51 | 290 | 4.30e-100 | 297 |
| Msa0573980 | AT5G51130.2 | 52.823 | 248 | 86 | 4 | 21 | 267 | 51 | 268 | 1.15e-87 | 263 |
Find 80 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATGGATACATCTAAAT+TGG | 0.184613 | 4_1:+77310980 | Msa0573980:CDS |
| GTTTCGACCTGAAGAGTTTC+AGG | 0.191545 | 4_1:+77312132 | Msa0573980:CDS |
| CTTCAAAGAAGAAGGCTCTT+TGG | 0.238022 | 4_1:-77310447 | None:intergenic |
| GGTGGTGTTGACTTGGGACC+TGG | 0.252339 | 4_1:+77311238 | Msa0573980:CDS |
| CTTGGAATCGACATTGATTC+TGG | 0.260635 | 4_1:+77309731 | Msa0573980:CDS |
| TTTAACTGCCGGAGCATTCT+TGG | 0.287306 | 4_1:+77309713 | Msa0573980:CDS |
| TTGGCCTGGTGGTGTTGACT+TGG | 0.296263 | 4_1:+77311231 | Msa0573980:CDS |
| TCTAAAATGAGGTTAGAGTT+AGG | 0.309072 | 4_1:-77308767 | None:intergenic |
| GGGAAGGATTGTCTTGATAT+TGG | 0.319498 | 4_1:+77309079 | Msa0573980:CDS |
| AGCACTATGATACTATTCTT+TGG | 0.342462 | 4_1:+77310540 | Msa0573980:CDS |
| ATGGCTGTTGTCCTTGAGTT+TGG | 0.343194 | 4_1:-77310366 | None:intergenic |
| AAAATGGATACATCTAAATT+GGG | 0.343362 | 4_1:+77310981 | Msa0573980:CDS |
| GGGATAATCACCATACAAAT+TGG | 0.344516 | 4_1:+77309112 | Msa0573980:CDS |
| ATCGAGTGGAAGATGCAAAT+TGG | 0.354404 | 4_1:+77310288 | Msa0573980:CDS |
| GCAGTCTTAGTGTATCAAAA+TGG | 0.354475 | 4_1:+77310965 | Msa0573980:intron |
| ATAGTATCATAGTGCTTTCC+TGG | 0.366508 | 4_1:-77310533 | None:intergenic |
| TTCTTTGAAGCAAATTGATC+TGG | 0.370061 | 4_1:+77310460 | Msa0573980:CDS |
| GCTTCATTGTATGCAAGCTT+GGG | 0.389359 | 4_1:-77312718 | None:intergenic |
| AGCTTCATTGTATGCAAGCT+TGG | 0.394532 | 4_1:-77312719 | None:intergenic |
| AACCTTTGAAGGTTTATTCC+TGG | 0.395124 | 4_1:-77310342 | None:intergenic |
| CTAAAATGAGGTTAGAGTTA+GGG | 0.403198 | 4_1:-77308766 | None:intergenic |
| TTGTTACCTCTGAGGCATTA+CGG | 0.403660 | 4_1:-77311678 | None:intergenic |
| TGGCCTGGTGGTGTTGACTT+GGG | 0.412326 | 4_1:+77311232 | Msa0573980:CDS |
| AAACTTAATATTACGGTAGT+TGG | 0.413843 | 4_1:-77312113 | None:intergenic |
| AGTATTTCCTGAAACTCTTC+AGG | 0.429488 | 4_1:-77312139 | None:intergenic |
| TTAACCCACTTGGGTTGGCC+TGG | 0.430266 | 4_1:+77311217 | Msa0573980:CDS |
| TCAATTTGCTTCAAAGAAGA+AGG | 0.430392 | 4_1:-77310455 | None:intergenic |
| TAGTACACACTGTTTGGAAC+TGG | 0.435049 | 4_1:+77308708 | None:intergenic |
| ACCCTCGGTTGAAAGTGTTC+AGG | 0.438579 | 4_1:+77309041 | Msa0573980:CDS |
| TCAGGAAATACTGCTAGATA+AGG | 0.453122 | 4_1:+77312150 | Msa0573980:CDS |
| TGTTCTCTGAATGGTCTGTA+TGG | 0.456927 | 4_1:-77310385 | None:intergenic |
| TTGAGTTTGGAAACCTTTGA+AGG | 0.463780 | 4_1:-77310353 | None:intergenic |
| TGAAAGTGTTCAGGAAAGAA+TGG | 0.465298 | 4_1:+77309050 | Msa0573980:CDS |
| TTCAGGAAAGAATGGTTTCA+AGG | 0.477238 | 4_1:+77309058 | Msa0573980:CDS |
| CAGGTCGAAACTTAATATTA+CGG | 0.481472 | 4_1:-77312120 | None:intergenic |
| GTGGTGTTGACTTGGGACCT+GGG | 0.486494 | 4_1:+77311239 | Msa0573980:CDS |
| CAATGAAGCTGCTGCTGAAG+AGG | 0.494791 | 4_1:+77312732 | Msa0573980:CDS |
| GCTTCATATATTAACCCACT+TGG | 0.500745 | 4_1:+77311207 | Msa0573980:intron |
| TTACATTATTTGCAGAGACT+TGG | 0.501011 | 4_1:+77311019 | Msa0573980:CDS |
| TAACTCTTGTAGTTTCCGTA+TGG | 0.504005 | 4_1:-77308893 | None:intergenic |
| CAGTGGCACTGTTCTCTGAA+TGG | 0.514548 | 4_1:-77310394 | None:intergenic |
| TGCCAGGAATAAACCTTCAA+AGG | 0.516283 | 4_1:+77310340 | Msa0573980:CDS |
| AACTCTTGTAGTTTCCGTAT+GGG | 0.518939 | 4_1:-77308892 | None:intergenic |
| TGGGAGTGTGCTCCTCCTCA+AGG | 0.526175 | 4_1:+77311258 | Msa0573980:CDS |
| CTGCTAGATTGGAATCTGCC+AGG | 0.536348 | 4_1:+77310324 | Msa0573980:CDS |
| TCATACGACTTCCATGGCTG+AGG | 0.536890 | 4_1:-77311649 | None:intergenic |
| GGTCCCAAGTCAACACCACC+AGG | 0.536913 | 4_1:-77311235 | None:intergenic |
| ATATATTAACCCACTTGGGT+TGG | 0.542098 | 4_1:+77311212 | Msa0573980:CDS |
| CCATCCAACAATCTAAAATG+AGG | 0.543690 | 4_1:-77308778 | None:intergenic |
| CTTCATATATTAACCCACTT+GGG | 0.543862 | 4_1:+77311208 | Msa0573980:CDS |
| TTGCTTTCATACGACTTCCA+TGG | 0.544539 | 4_1:-77311655 | None:intergenic |
| TCCTGAACACTTTCAACCGA+GGG | 0.546185 | 4_1:-77309042 | None:intergenic |
| AAATGGATACATCTAAATTG+GGG | 0.547982 | 4_1:+77310982 | Msa0573980:CDS |
| TTCAAAGGTTTCCAAACTCA+AGG | 0.548173 | 4_1:+77310355 | Msa0573980:CDS |
| TATCATAGTGCTTTCCTGGT+GGG | 0.548851 | 4_1:-77310529 | None:intergenic |
| GAAAGAATGGTTTCAAGGGA+AGG | 0.558985 | 4_1:+77309063 | Msa0573980:CDS |
| TTGATATTGGTTGCAACAGT+GGG | 0.565687 | 4_1:+77309092 | Msa0573980:CDS |
| TGTCGATTCCAAGAATGCTC+CGG | 0.573246 | 4_1:-77309721 | None:intergenic |
| GTTTCAGATTGCTGAAGGTG+TGG | 0.573663 | 4_1:+77309012 | Msa0573980:intron |
| CGAACAAGTTGAAACCCTAA+AGG | 0.580807 | 4_1:+77308823 | Msa0573980:CDS |
| CAGCACTGAAGTTTAACTGC+CGG | 0.587174 | 4_1:+77309702 | Msa0573980:intron |
| GTTCACAGTCGGCACCCACC+AGG | 0.587559 | 4_1:+77310515 | Msa0573980:CDS |
| TCAGGAAAGAATGGTTTCAA+GGG | 0.591096 | 4_1:+77309059 | Msa0573980:CDS |
| ATGTTGTTTCAGATTGCTGA+AGG | 0.596326 | 4_1:+77309007 | Msa0573980:intron |
| CTTCATTGTATGCAAGCTTG+GGG | 0.599301 | 4_1:-77312717 | None:intergenic |
| ACCCACTTGGGTTGGCCTGG+TGG | 0.601131 | 4_1:+77311220 | Msa0573980:CDS |
| TTGAGGAGGAGCACACTCCC+AGG | 0.604754 | 4_1:-77311256 | None:intergenic |
| TTGTGTTGGAACCTCAGCCA+TGG | 0.610233 | 4_1:+77311638 | Msa0573980:CDS |
| TTCCTGAACACTTTCAACCG+AGG | 0.622556 | 4_1:-77309043 | None:intergenic |
| CACCACCAGGCCAACCCAAG+TGG | 0.626086 | 4_1:-77311222 | None:intergenic |
| CTTGATATTGGTTGCAACAG+TGG | 0.626854 | 4_1:+77309091 | Msa0573980:CDS |
| ATTAACATTTGATGATACAG+TGG | 0.634096 | 4_1:-77310411 | None:intergenic |
| AATGGATACATCTAAATTGG+GGG | 0.642448 | 4_1:+77310983 | Msa0573980:CDS |
| ACCACCAGGCCAACCCAAGT+GGG | 0.642479 | 4_1:-77311221 | None:intergenic |
| GTATCATAGTGCTTTCCTGG+TGG | 0.642604 | 4_1:-77310530 | None:intergenic |
| ATGGATACATCTAAATTGGG+GGG | 0.646976 | 4_1:+77310984 | Msa0573980:CDS |
| AAGGTGTGGATGAAGACCCT+CGG | 0.655247 | 4_1:+77309026 | Msa0573980:CDS |
| CAAGCTAATTGTTACCTCTG+AGG | 0.658810 | 4_1:-77311686 | None:intergenic |
| AAGCAACCGTAATGCCTCAG+AGG | 0.676692 | 4_1:+77311672 | Msa0573980:CDS |
| TCGAACTTGAGACCTTGAGG+AGG | 0.685881 | 4_1:-77311270 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATCTTTATGTTATTT+TGG | + | chr4_1:77310668-77310687 | Msa0573980:intron | 10.0% |
| !!! | TATTATCTTTATGTTATTTT+GGG | + | chr4_1:77310669-77310688 | Msa0573980:intron | 10.0% |
| !! | AGAAAAATGTATAAATAAAA+GGG | - | chr4_1:77312415-77312434 | None:intergenic | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+AGG | - | chr4_1:77312416-77312435 | None:intergenic | 10.0% |
| !! | TTGATTAAAATAGCAAAAAA+GGG | - | chr4_1:77308963-77308982 | None:intergenic | 15.0% |
| !! | TTTGATTAAAATAGCAAAAA+AGG | - | chr4_1:77308964-77308983 | None:intergenic | 15.0% |
| !! | TTAAAAAATAAATAGTTTGG+TGG | - | chr4_1:77309147-77309166 | None:intergenic | 15.0% |
| !! | TGGTTAAAAAATAAATAGTT+TGG | - | chr4_1:77309150-77309169 | None:intergenic | 15.0% |
| !! | TGTAATTTCTTTATAACATA+AGG | - | chr4_1:77309554-77309573 | None:intergenic | 15.0% |
| !! | TGTTATAAAGAAATTACATT+AGG | + | chr4_1:77309556-77309575 | Msa0573980:intron | 15.0% |
| !! | ATAGTTAGTATATAAAGAAA+GGG | - | chr4_1:77310940-77310959 | None:intergenic | 15.0% |
| !! | AATAGTTAGTATATAAAGAA+AGG | - | chr4_1:77310941-77310960 | None:intergenic | 15.0% |
| !! | GAAAAAAAAAAAAAAACCAT+AGG | - | chr4_1:77311081-77311100 | None:intergenic | 15.0% |
| !!! | TCTATAATTTCATTTTATGT+TGG | + | chr4_1:77311958-77311977 | Msa0573980:intron | 15.0% |
| !! | ATCATTATTTACGAAAAATA+AGG | + | chr4_1:77312041-77312060 | Msa0573980:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr4_1:77312351-77312370 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr4_1:77312352-77312371 | None:intergenic | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr4_1:77312452-77312471 | Msa0573980:intron | 15.0% |
| !!! | TATTTAACTTATTTGTAGAT+TGG | + | chr4_1:77312515-77312534 | Msa0573980:intron | 15.0% |
| !!! | ATTTAACTTATTTGTAGATT+GGG | + | chr4_1:77312516-77312535 | Msa0573980:intron | 15.0% |
| !!! | TATTTCTGAAAAATCAAAAT+TGG | - | chr4_1:77312602-77312621 | None:intergenic | 15.0% |
| !! | TCAATATCAAAATATATAAC+AGG | - | chr4_1:77312680-77312699 | None:intergenic | 15.0% |
| !! | TGATTAAAATAGCAAAAAAG+GGG | - | chr4_1:77308962-77308981 | None:intergenic | 20.0% |
| !! | GAAAAAAATACCAATTTGTA+TGG | - | chr4_1:77309125-77309144 | None:intergenic | 20.0% |
| !! | TGACATGAAAATTATTACAT+AGG | - | chr4_1:77309638-77309657 | None:intergenic | 20.0% |
| !! | TATAGCTATTTATTGTTCTT+CGG | - | chr4_1:77309932-77309951 | None:intergenic | 20.0% |
| !!! | TTTTAATACTGCTAGTAATT+TGG | + | chr4_1:77310183-77310202 | Msa0573980:intron | 20.0% |
| !!! | AATTTGGGATTTTAAAAATG+AGG | - | chr4_1:77310222-77310241 | None:intergenic | 20.0% |
| !! | CAATTGAAACTAAACAATTT+GGG | - | chr4_1:77310237-77310256 | None:intergenic | 20.0% |
| !! | ACAATTGAAACTAAACAATT+TGG | - | chr4_1:77310238-77310257 | None:intergenic | 20.0% |
| !! | AGATAATAAAGACAAACAAA+AGG | - | chr4_1:77310657-77310676 | None:intergenic | 20.0% |
| !! | TTTAAAAAGAAGTAAATGCT+GGG | - | chr4_1:77310870-77310889 | None:intergenic | 20.0% |
| !! | ATTTAAAAAGAAGTAAATGC+TGG | - | chr4_1:77310871-77310890 | None:intergenic | 20.0% |
| !! | AAAATGGATACATCTAAATT+GGG | + | chr4_1:77310981-77311000 | Msa0573980:CDS | 20.0% |
| !! | AAAAAAAAAAAACCATAGGA+TGG | - | chr4_1:77311077-77311096 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTCCTTCTCTT+AGG | + | chr4_1:77311089-77311108 | Msa0573980:intron | 20.0% |
| !! | AAAGATTACATTGTAAGAAA+CGG | - | chr4_1:77311597-77311616 | None:intergenic | 20.0% |
| !! | ATCAATAATCACAAAAAAGA+AGG | - | chr4_1:77311712-77311731 | None:intergenic | 20.0% |
| !!! | TTATTGATTTTTTAGCTCAA+AGG | + | chr4_1:77311724-77311743 | Msa0573980:intron | 20.0% |
| !!! | TATTGATTTTTTAGCTCAAA+GGG | + | chr4_1:77311725-77311744 | Msa0573980:intron | 20.0% |
| !!! | AATTTGAACCTATTTTGTTT+AGG | + | chr4_1:77311875-77311894 | Msa0573980:intron | 20.0% |
| !!! | ATTTGAACCTATTTTGTTTA+GGG | + | chr4_1:77311876-77311895 | Msa0573980:intron | 20.0% |
| !! | GAAATTATAGAAGAAAACAT+AGG | - | chr4_1:77311949-77311968 | None:intergenic | 20.0% |
| !! | TTATTTACGAAAAATAAGGA+AGG | + | chr4_1:77312045-77312064 | Msa0573980:intron | 20.0% |
| !! | TATTTACGAAAAATAAGGAA+GGG | + | chr4_1:77312046-77312065 | Msa0573980:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr4_1:77312282-77312301 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr4_1:77312318-77312337 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr4_1:77312319-77312338 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr4_1:77312392-77312411 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr4_1:77312451-77312470 | Msa0573980:intron | 20.0% |
| ! | CATGAAAATTAGACATTACT+AGG | - | chr4_1:77309197-77309216 | None:intergenic | 25.0% |
| !! | TCTAATTTTCATGCATCATT+GGG | + | chr4_1:77309204-77309223 | Msa0573980:intron | 25.0% |
| !!! | TGTATGTTTGGTTTCAATTT+TGG | + | chr4_1:77309249-77309268 | Msa0573980:intron | 25.0% |
| !! | AATCTAGAATGTGTAGTTAT+TGG | + | chr4_1:77309369-77309388 | Msa0573980:intron | 25.0% |
| ! | TGAGCTAAACAATAAATTCA+CGG | - | chr4_1:77309414-77309433 | None:intergenic | 25.0% |
| !! | AGTGAGTTGAATGTATAAAA+TGG | - | chr4_1:77309465-77309484 | None:intergenic | 25.0% |
| ! | TCTTTATAACATAAGGAGAA+CGG | - | chr4_1:77309547-77309566 | None:intergenic | 25.0% |
| !! | TTTTATGTTACTATCTGATG+AGG | + | chr4_1:77309823-77309842 | Msa0573980:intron | 25.0% |
| ! | TTGTAGTATTACAACTTACA+AGG | - | chr4_1:77309991-77310010 | None:intergenic | 25.0% |
| ! | ATTATACTATGCGAAAAATC+AGG | + | chr4_1:77310038-77310057 | Msa0573980:intron | 25.0% |
| ! | TTATACTATGCGAAAAATCA+GGG | + | chr4_1:77310039-77310058 | Msa0573980:intron | 25.0% |
| !! | ATTAACATTTGATGATACAG+TGG | - | chr4_1:77310414-77310433 | None:intergenic | 25.0% |
| !! | GACAAACAATTTTGAACAAT+GGG | - | chr4_1:77310705-77310724 | None:intergenic | 25.0% |
| !! | AGACAAACAATTTTGAACAA+TGG | - | chr4_1:77310706-77310725 | None:intergenic | 25.0% |
| ! | ATTATCTTTACGTTCTTCTT+GGG | + | chr4_1:77310729-77310748 | Msa0573980:intron | 25.0% |
| ! | CAGAAATAAACCCAAAAATT+GGG | - | chr4_1:77310765-77310784 | None:intergenic | 25.0% |
| ! | TAGATAGTTTATATCCCAAT+TGG | + | chr4_1:77310786-77310805 | Msa0573980:intron | 25.0% |
| !! | TTTTTAAATTACTAAGCTGC+AGG | + | chr4_1:77310882-77310901 | Msa0573980:intron | 25.0% |
| ! | CAAAATGGATACATCTAAAT+TGG | + | chr4_1:77310980-77310999 | Msa0573980:CDS | 25.0% |
| ! | AAATGGATACATCTAAATTG+GGG | + | chr4_1:77310982-77311001 | Msa0573980:CDS | 25.0% |
| !! | AACTGAACTTTTATATTACG+TGG | - | chr4_1:77311121-77311140 | None:intergenic | 25.0% |
| ! | AGTTCAGTTGAAAAAAGAAA+AGG | + | chr4_1:77311132-77311151 | Msa0573980:intron | 25.0% |
| ! | AAACTTAATATTACGGTAGT+TGG | - | chr4_1:77312116-77312135 | None:intergenic | 25.0% |
| ! | AGGTTTGTATTAAATACTTC+AGG | + | chr4_1:77312170-77312189 | Msa0573980:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr4_1:77312283-77312302 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr4_1:77312393-77312412 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAAGGGAAAG+TGG | - | chr4_1:77312408-77312427 | None:intergenic | 25.0% |
| ! | CAATTTCATTCAAATGCTAA+TGG | + | chr4_1:77312488-77312507 | Msa0573980:intron | 25.0% |
| CTAAAATGAGGTTAGAGTTA+GGG | - | chr4_1:77308769-77308788 | None:intergenic | 30.0% | |
| ! | TCTAAAATGAGGTTAGAGTT+AGG | - | chr4_1:77308770-77308789 | None:intergenic | 30.0% |
| ! | CTAACCTCATTTTAGATTGT+TGG | + | chr4_1:77308774-77308793 | Msa0573980:five_prime_UTR | 30.0% |
| ! | GTTCTTGTGATTTTCCTTTA+GGG | - | chr4_1:77308840-77308859 | None:intergenic | 30.0% |
| ! | TGTTCTTGTGATTTTCCTTT+AGG | - | chr4_1:77308841-77308860 | None:intergenic | 30.0% |
| ! | CATTGTAGAACTTGATAACA+TGG | - | chr4_1:77309170-77309189 | None:intergenic | 30.0% |
| ! | GTCTAATTTTCATGCATCAT+TGG | + | chr4_1:77309203-77309222 | Msa0573980:intron | 30.0% |
| TGATTCTCTTAGTGTATGTT+TGG | + | chr4_1:77309237-77309256 | Msa0573980:intron | 30.0% | |
| !! | TGTTTGGTTTCAATTTTGGA+AGG | + | chr4_1:77309253-77309272 | Msa0573980:intron | 30.0% |
| !! | GTTTGGTTTCAATTTTGGAA+GGG | + | chr4_1:77309254-77309273 | Msa0573980:intron | 30.0% |
| TGTATAAAATGGTCTGTGTT+TGG | - | chr4_1:77309454-77309473 | None:intergenic | 30.0% | |
| GTGCTAAAGGTAACATATTT+CGG | + | chr4_1:77309855-77309874 | Msa0573980:intron | 30.0% | |
| !!! | ATGAGATGAAGTGTTTTTTG+AGG | - | chr4_1:77310082-77310101 | None:intergenic | 30.0% |
| GATAAGCTACATATTCCAAT+AGG | - | chr4_1:77310142-77310161 | None:intergenic | 30.0% | |
| TTTGAGAAAAACTGCTAGAT+TGG | + | chr4_1:77310313-77310332 | Msa0573980:CDS | 30.0% | |
| ! | TCAATTTGCTTCAAAGAAGA+AGG | - | chr4_1:77310458-77310477 | None:intergenic | 30.0% |
| !! | TTCTTTGAAGCAAATTGATC+TGG | + | chr4_1:77310460-77310479 | Msa0573980:CDS | 30.0% |
| ! | GAGAAAATTTTGTTCACAGT+CGG | + | chr4_1:77310504-77310523 | Msa0573980:CDS | 30.0% |
| AGCACTATGATACTATTCTT+TGG | + | chr4_1:77310540-77310559 | Msa0573980:CDS | 30.0% | |
| ! | ACTAAGTAGAACCTTTTCTT+TGG | + | chr4_1:77310589-77310608 | Msa0573980:intron | 30.0% |
| ! | CTAAGTAGAACCTTTTCTTT+GGG | + | chr4_1:77310590-77310609 | Msa0573980:intron | 30.0% |
| ! | TAAGTAGAACCTTTTCTTTG+GGG | + | chr4_1:77310591-77310610 | Msa0573980:intron | 30.0% |
| GATTATCTTTACGTTCTTCT+TGG | + | chr4_1:77310728-77310747 | Msa0573980:intron | 30.0% | |
| GCAGAAATAAACCCAAAAAT+TGG | - | chr4_1:77310766-77310785 | None:intergenic | 30.0% | |
| CAACAAGAAGATAACCAATT+GGG | - | chr4_1:77310803-77310822 | None:intergenic | 30.0% | |
| ACAACAAGAAGATAACCAAT+TGG | - | chr4_1:77310804-77310823 | None:intergenic | 30.0% | |
| AATGGATACATCTAAATTGG+GGG | + | chr4_1:77310983-77311002 | Msa0573980:CDS | 30.0% | |
| TTACATTATTTGCAGAGACT+TGG | + | chr4_1:77311019-77311038 | Msa0573980:CDS | 30.0% | |
| AAAAAAAACCATAGGATGGT+AGG | - | chr4_1:77311073-77311092 | None:intergenic | 30.0% | |
| CTTCATATATTAACCCACTT+GGG | + | chr4_1:77311208-77311227 | Msa0573980:CDS | 30.0% | |
| GATTACCAAGATAAAGAGAA+CGG | - | chr4_1:77311414-77311433 | None:intergenic | 30.0% | |
| AGAAAATGCACTTGGATATA+GGG | - | chr4_1:77311480-77311499 | None:intergenic | 30.0% | |
| GGAAACCTTTACATGATATA+TGG | + | chr4_1:77311761-77311780 | Msa0573980:intron | 30.0% | |
| ! | TGTTTTGTAAATGTTGTGCA+TGG | + | chr4_1:77311827-77311846 | Msa0573980:intron | 30.0% |
| AGCAAATCCCTAAACAAAAT+AGG | - | chr4_1:77311886-77311905 | None:intergenic | 30.0% | |
| ! | AGCAAATCCTACCTTTTAAA+TGG | + | chr4_1:77311915-77311934 | Msa0573980:intron | 30.0% |
| CATCTATCCATTTAAAAGGT+AGG | - | chr4_1:77311925-77311944 | None:intergenic | 30.0% | |
| AGGACATCTATCCATTTAAA+AGG | - | chr4_1:77311929-77311948 | None:intergenic | 30.0% | |
| CAGGTCGAAACTTAATATTA+CGG | - | chr4_1:77312123-77312142 | None:intergenic | 30.0% | |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr4_1:77312304-77312323 | None:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr4_1:77312305-77312324 | None:intergenic | 30.0% |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr4_1:77312456-77312475 | Msa0573980:intron | 30.0% | |
| ! | CCATCCAACAATCTAAAATG+AGG | - | chr4_1:77308781-77308800 | None:intergenic | 35.0% |
| ! | CCTCATTTTAGATTGTTGGA+TGG | + | chr4_1:77308778-77308797 | Msa0573980:exon | 35.0% |
| TGTTGGATGGATCAGAAAAA+TGG | + | chr4_1:77308791-77308810 | Msa0573980:exon | 35.0% | |
| AACTCTTGTAGTTTCCGTAT+GGG | - | chr4_1:77308895-77308914 | None:intergenic | 35.0% | |
| TAACTCTTGTAGTTTCCGTA+TGG | - | chr4_1:77308896-77308915 | None:intergenic | 35.0% | |
| !! | ATGTTGTTTCAGATTGCTGA+AGG | + | chr4_1:77309007-77309026 | Msa0573980:intron | 35.0% |
| !! | TGAAAGTGTTCAGGAAAGAA+TGG | + | chr4_1:77309050-77309069 | Msa0573980:CDS | 35.0% |
| TTCAGGAAAGAATGGTTTCA+AGG | + | chr4_1:77309058-77309077 | Msa0573980:CDS | 35.0% | |
| TCAGGAAAGAATGGTTTCAA+GGG | + | chr4_1:77309059-77309078 | Msa0573980:CDS | 35.0% | |
| ! | TTGATATTGGTTGCAACAGT+GGG | + | chr4_1:77309092-77309111 | Msa0573980:CDS | 35.0% |
| GGGATAATCACCATACAAAT+TGG | + | chr4_1:77309112-77309131 | Msa0573980:CDS | 35.0% | |
| GTCTGTGTTTGGATGTATTT+AGG | - | chr4_1:77309443-77309462 | None:intergenic | 35.0% | |
| ! | AGTTAAACTTCAGTGCTGTT+GGG | - | chr4_1:77309700-77309719 | None:intergenic | 35.0% |
| ATTCTGATCTCTATTGCAGA+AGG | + | chr4_1:77309768-77309787 | Msa0573980:intron | 35.0% | |
| TTCTGATCTCTATTGCAGAA+GGG | + | chr4_1:77309769-77309788 | Msa0573980:intron | 35.0% | |
| GAGGCTTATATATGTGCTAA+AGG | + | chr4_1:77309842-77309861 | Msa0573980:intron | 35.0% | |
| ACTTTGCTAATAGCATGAGT+TGG | - | chr4_1:77309966-77309985 | None:intergenic | 35.0% | |
| TACTACAAAGCTGTATGAAC+AGG | + | chr4_1:77310003-77310022 | Msa0573980:intron | 35.0% | |
| TTCCAATAGGATTCAAGAGT+CGG | - | chr4_1:77310129-77310148 | None:intergenic | 35.0% | |
| ! | AACCTTTGAAGGTTTATTCC+TGG | - | chr4_1:77310345-77310364 | None:intergenic | 35.0% |
| TTGAGTTTGGAAACCTTTGA+AGG | - | chr4_1:77310356-77310375 | None:intergenic | 35.0% | |
| TTCAAAGGTTTCCAAACTCA+AGG | + | chr4_1:77310355-77310374 | Msa0573980:CDS | 35.0% | |
| ATAGTATCATAGTGCTTTCC+TGG | - | chr4_1:77310536-77310555 | None:intergenic | 35.0% | |
| TCTACTTAGTGAAGCAGAAA+AGG | - | chr4_1:77310579-77310598 | None:intergenic | 35.0% | |
| ! | AAGTAGAACCTTTTCTTTGG+GGG | + | chr4_1:77310592-77310611 | Msa0573980:intron | 35.0% |
| GCAGTCTTAGTGTATCAAAA+TGG | + | chr4_1:77310965-77310984 | Msa0573980:intron | 35.0% | |
| ATGGATACATCTAAATTGGG+GGG | + | chr4_1:77310984-77311003 | Msa0573980:CDS | 35.0% | |
| GCTTCATATATTAACCCACT+TGG | + | chr4_1:77311207-77311226 | Msa0573980:intron | 35.0% | |
| ATATATTAACCCACTTGGGT+TGG | + | chr4_1:77311212-77311231 | Msa0573980:CDS | 35.0% | |
| AAGGCGTAGATTGTTTACAA+GGG | - | chr4_1:77311384-77311403 | None:intergenic | 35.0% | |
| ! | AAAGGCGTAGATTGTTTACA+AGG | - | chr4_1:77311385-77311404 | None:intergenic | 35.0% |
| GAAAATGCACTTGGATATAG+GGG | - | chr4_1:77311479-77311498 | None:intergenic | 35.0% | |
| GAGAAAATGCACTTGGATAT+AGG | - | chr4_1:77311481-77311500 | None:intergenic | 35.0% | |
| TAGCTAATTGTTACCTCTAG+AGG | - | chr4_1:77311566-77311585 | None:intergenic | 35.0% | |
| ATGTAATCTTTCTTCTGAGC+AGG | + | chr4_1:77311606-77311625 | Msa0573980:intron | 35.0% | |
| TGTAATCTTTCTTCTGAGCA+GGG | + | chr4_1:77311607-77311626 | Msa0573980:intron | 35.0% | |
| AGTATTTCCTGAAACTCTTC+AGG | - | chr4_1:77312142-77312161 | None:intergenic | 35.0% | |
| TCAGGAAATACTGCTAGATA+AGG | + | chr4_1:77312150-77312169 | Msa0573980:CDS | 35.0% | |
| ! | CGGAGGGAGTATAAATAAAT+TGG | - | chr4_1:77312244-77312263 | None:intergenic | 35.0% |
| GAAAATGGGTCAGTTATTCA+GGG | - | chr4_1:77312268-77312287 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+AGG | - | chr4_1:77312269-77312288 | None:intergenic | 35.0% | |
| AATCGCATTCACTCATCATA+TGG | - | chr4_1:77312639-77312658 | None:intergenic | 35.0% | |
| ! | CGAACAAGTTGAAACCCTAA+AGG | + | chr4_1:77308823-77308842 | Msa0573980:CDS | 40.0% |
| ! | CGACAACAAGTTTTCCCATA+CGG | + | chr4_1:77308878-77308897 | Msa0573980:CDS | 40.0% |
| GAAAGAATGGTTTCAAGGGA+AGG | + | chr4_1:77309063-77309082 | Msa0573980:CDS | 40.0% | |
| GGGAAGGATTGTCTTGATAT+TGG | + | chr4_1:77309079-77309098 | Msa0573980:CDS | 40.0% | |
| ! | CTTGATATTGGTTGCAACAG+TGG | + | chr4_1:77309091-77309110 | Msa0573980:CDS | 40.0% |
| CAGTTAAACTTCAGTGCTGT+TGG | - | chr4_1:77309701-77309720 | None:intergenic | 40.0% | |
| !! | CTTGGAATCGACATTGATTC+TGG | + | chr4_1:77309731-77309750 | Msa0573980:CDS | 40.0% |
| TACAAAGCTGTATGAACAGG+TGG | + | chr4_1:77310006-77310025 | Msa0573980:intron | 40.0% | |
| TTCCGACTCTTGAATCCTAT+TGG | + | chr4_1:77310124-77310143 | Msa0573980:intron | 40.0% | |
| ATCGAGTGGAAGATGCAAAT+TGG | + | chr4_1:77310288-77310307 | Msa0573980:CDS | 40.0% | |
| TGCCAGGAATAAACCTTCAA+AGG | + | chr4_1:77310340-77310359 | Msa0573980:CDS | 40.0% | |
| TGTTCTCTGAATGGTCTGTA+TGG | - | chr4_1:77310388-77310407 | None:intergenic | 40.0% | |
| CTTCAAAGAAGAAGGCTCTT+TGG | - | chr4_1:77310450-77310469 | None:intergenic | 40.0% | |
| TATCATAGTGCTTTCCTGGT+GGG | - | chr4_1:77310532-77310551 | None:intergenic | 40.0% | |
| !!! | ATGTTATTTTGGGCCCTTTC+TGG | + | chr4_1:77310679-77310698 | Msa0573980:intron | 40.0% |
| TTTGAACAATGGGCCAGAAA+GGG | - | chr4_1:77310695-77310714 | None:intergenic | 40.0% | |
| ! | TTTTGAACAATGGGCCAGAA+AGG | - | chr4_1:77310696-77310715 | None:intergenic | 40.0% |
| !!! | CCATTTCTGGCCCAATTTTT+GGG | + | chr4_1:77310752-77310771 | Msa0573980:intron | 40.0% |
| AGGAGATGATACTTACTGGT+CGG | - | chr4_1:77311053-77311072 | None:intergenic | 40.0% | |
| TGGTAGGAGATGATACTTAC+TGG | - | chr4_1:77311057-77311076 | None:intergenic | 40.0% | |
| TATCATCTCCTACCATCCTA+TGG | + | chr4_1:77311062-77311081 | Msa0573980:intron | 40.0% | |
| ACTAGACAGGTCTCATATCA+TGG | - | chr4_1:77311158-77311177 | None:intergenic | 40.0% | |
| ACATCATTCTCTCACTAGAC+AGG | - | chr4_1:77311171-77311190 | None:intergenic | 40.0% | |
| CTAAATTAGCCCACCCAAAT+TGG | - | chr4_1:77311308-77311327 | None:intergenic | 40.0% | |
| TAAAGAGAACGGAAGGAGAA+AGG | - | chr4_1:77311403-77311422 | None:intergenic | 40.0% | |
| TCCTTCCGTTCTCTTTATCT+TGG | + | chr4_1:77311406-77311425 | Msa0573980:intron | 40.0% | |
| ACCAAGATAAAGAGAACGGA+AGG | - | chr4_1:77311410-77311429 | None:intergenic | 40.0% | |
| TTTGAACAACGAATCAGAGC+AGG | - | chr4_1:77311517-77311536 | None:intergenic | 40.0% | |
| ACATTGCACATATCCTCTAG+AGG | + | chr4_1:77311550-77311569 | Msa0573980:intron | 40.0% | |
| TTGCTTTCATACGACTTCCA+TGG | - | chr4_1:77311658-77311677 | None:intergenic | 40.0% | |
| !! | TTGTTACCTCTGAGGCATTA+CGG | - | chr4_1:77311681-77311700 | None:intergenic | 40.0% |
| CAAGCTAATTGTTACCTCTG+AGG | - | chr4_1:77311689-77311708 | None:intergenic | 40.0% | |
| GCTCGCCATATATCATGTAA+AGG | - | chr4_1:77311769-77311788 | None:intergenic | 40.0% | |
| TGTAAATGTTGTGCATGGTG+TGG | + | chr4_1:77311832-77311851 | Msa0573980:intron | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr4_1:77312459-77312478 | Msa0573980:intron | 40.0% | |
| GCAATCACTTCAGATTTGAC+AGG | + | chr4_1:77312554-77312573 | Msa0573980:intron | 40.0% | |
| TATAACAGGCACTTCTCTAC+CGG | - | chr4_1:77312666-77312685 | None:intergenic | 40.0% | |
| CTTCATTGTATGCAAGCTTG+GGG | - | chr4_1:77312720-77312739 | None:intergenic | 40.0% | |
| GCTTCATTGTATGCAAGCTT+GGG | - | chr4_1:77312721-77312740 | None:intergenic | 40.0% | |
| AGCTTCATTGTATGCAAGCT+TGG | - | chr4_1:77312722-77312741 | None:intergenic | 40.0% | |
| ! | GCTTTTGAGCAAGAGGAACA+AGG | - | chr4_1:77308736-77308755 | None:intergenic | 45.0% |
| ! | CAGCAAAGCTTTTGAGCAAG+AGG | - | chr4_1:77308743-77308762 | None:intergenic | 45.0% |
| GTTTCAGATTGCTGAAGGTG+TGG | + | chr4_1:77309012-77309031 | Msa0573980:intron | 45.0% | |
| TCCTGAACACTTTCAACCGA+GGG | - | chr4_1:77309045-77309064 | None:intergenic | 45.0% | |
| TTCCTGAACACTTTCAACCG+AGG | - | chr4_1:77309046-77309065 | None:intergenic | 45.0% | |
| ! | CAGCACTGAAGTTTAACTGC+CGG | + | chr4_1:77309702-77309721 | Msa0573980:intron | 45.0% |
| ! | TTTAACTGCCGGAGCATTCT+TGG | + | chr4_1:77309713-77309732 | Msa0573980:CDS | 45.0% |
| !! | TGTCGATTCCAAGAATGCTC+CGG | - | chr4_1:77309724-77309743 | None:intergenic | 45.0% |
| ! | CTCTGTTTTGCTAGATCGAG+TGG | + | chr4_1:77310274-77310293 | Msa0573980:intron | 45.0% |
| ATGGCTGTTGTCCTTGAGTT+TGG | - | chr4_1:77310369-77310388 | None:intergenic | 45.0% | |
| GTATCATAGTGCTTTCCTGG+TGG | - | chr4_1:77310533-77310552 | None:intergenic | 45.0% | |
| GCTTAATGCCCCCAAAGAAA+AGG | - | chr4_1:77310603-77310622 | None:intergenic | 45.0% | |
| !!! | GCCATTTCTGGCCCAATTTT+TGG | + | chr4_1:77310751-77310770 | Msa0573980:intron | 45.0% |
| CCCAAAAATTGGGCCAGAAA+TGG | - | chr4_1:77310755-77310774 | None:intergenic | 45.0% | |
| CATCTAAATTGGGGGGATGA+TGG | + | chr4_1:77310991-77311010 | Msa0573980:CDS | 45.0% | |
| CGTGGTTAAGACCTAAGAGA+AGG | - | chr4_1:77311103-77311122 | None:intergenic | 45.0% | |
| GAATCGAACTTGAGACCTTG+AGG | - | chr4_1:77311276-77311295 | None:intergenic | 45.0% | |
| GTCTCAAGTTCGATTCTCCT+CGG | + | chr4_1:77311280-77311299 | Msa0573980:intron | 45.0% | |
| !! | ATTCTCCTCGGTGCCAATTT+GGG | + | chr4_1:77311292-77311311 | Msa0573980:intron | 45.0% |
| ! | GAAAGAGGGCACAAGAAAAC+AGG | - | chr4_1:77311440-77311459 | None:intergenic | 45.0% |
| ACTTGGATATAGGGGAGAGA+CGG | - | chr4_1:77311471-77311490 | None:intergenic | 45.0% | |
| GAGTGCAGAGAAAATGCACT+TGG | - | chr4_1:77311488-77311507 | None:intergenic | 45.0% | |
| AATCTTTCTTCTGAGCAGGG+TGG | + | chr4_1:77311610-77311629 | Msa0573980:intron | 45.0% | |
| ! | TCAAAGGGTGTACTGAGATG+TGG | + | chr4_1:77311740-77311759 | Msa0573980:intron | 45.0% |
| GCAGCAGTGATCTGCATAAT+GGG | - | chr4_1:77312094-77312113 | None:intergenic | 45.0% | |
| GTTTCGACCTGAAGAGTTTC+AGG | + | chr4_1:77312132-77312151 | Msa0573980:CDS | 45.0% | |
| ATGGGTCAGTTATTCAGGGA+CGG | - | chr4_1:77312264-77312283 | None:intergenic | 45.0% | |
| TGAGTGAATGCGATTCTTCC+CGG | + | chr4_1:77312644-77312663 | Msa0573980:intron | 45.0% | |
| ATAACAGGCACTTCTCTACC+GGG | - | chr4_1:77312665-77312684 | None:intergenic | 45.0% | |
| AAGGTGTGGATGAAGACCCT+CGG | + | chr4_1:77309026-77309045 | Msa0573980:CDS | 50.0% | |
| !! | ACCCTCGGTTGAAAGTGTTC+AGG | + | chr4_1:77309041-77309060 | Msa0573980:CDS | 50.0% |
| CTGCTAGATTGGAATCTGCC+AGG | + | chr4_1:77310324-77310343 | Msa0573980:CDS | 50.0% | |
| CAGTGGCACTGTTCTCTGAA+TGG | - | chr4_1:77310397-77310416 | None:intergenic | 50.0% | |
| !! | TTGGGGGCATTAAGCTCTTG+AGG | + | chr4_1:77310608-77310627 | Msa0573980:intron | 50.0% |
| !! | TGGGGGCATTAAGCTCTTGA+GGG | + | chr4_1:77310609-77310628 | Msa0573980:intron | 50.0% |
| TTAAGCTCTTGAGGGGAGGA+AGG | + | chr4_1:77310617-77310636 | Msa0573980:intron | 50.0% | |
| CGTTCTTCTTGGGCCATTTC+TGG | + | chr4_1:77310739-77310758 | Msa0573980:intron | 50.0% | |
| TCGAACTTGAGACCTTGAGG+AGG | - | chr4_1:77311273-77311292 | None:intergenic | 50.0% | |
| !! | GATTCTCCTCGGTGCCAATT+TGG | + | chr4_1:77311291-77311310 | Msa0573980:intron | 50.0% |
| CAAGGGTTCATGCACAAGCA+TGG | - | chr4_1:77311367-77311386 | None:intergenic | 50.0% | |
| TTGGATATAGGGGAGAGACG+GGG | - | chr4_1:77311469-77311488 | None:intergenic | 50.0% | |
| CTTGGATATAGGGGAGAGAC+GGG | - | chr4_1:77311470-77311489 | None:intergenic | 50.0% | |
| ! | GCAGGGTGGCATTTTTGTGT+TGG | + | chr4_1:77311624-77311643 | Msa0573980:intron | 50.0% |
| TTGTGTTGGAACCTCAGCCA+TGG | + | chr4_1:77311638-77311657 | Msa0573980:CDS | 50.0% | |
| TCATACGACTTCCATGGCTG+AGG | - | chr4_1:77311652-77311671 | None:intergenic | 50.0% | |
| AAGCAACCGTAATGCCTCAG+AGG | + | chr4_1:77311672-77311691 | Msa0573980:CDS | 50.0% | |
| GGCAGCAGTGATCTGCATAA+TGG | - | chr4_1:77312095-77312114 | None:intergenic | 50.0% | |
| GTCAGTTATTCAGGGACGGA+GGG | - | chr4_1:77312260-77312279 | None:intergenic | 50.0% | |
| GATTTGACAGGTAGCACGAC+TGG | + | chr4_1:77312566-77312585 | Msa0573980:intron | 50.0% | |
| CAATGAAGCTGCTGCTGAAG+AGG | + | chr4_1:77312732-77312751 | Msa0573980:CDS | 50.0% | |
| TGCATGTGTTTGGTCTGCGG+TGG | - | chr4_1:77309523-77309542 | None:intergenic | 55.0% | |
| GGCTGCATGTGTTTGGTCTG+CGG | - | chr4_1:77309526-77309545 | None:intergenic | 55.0% | |
| GGAGAACGGCTGCATGTGTT+TGG | - | chr4_1:77309533-77309552 | None:intergenic | 55.0% | |
| ! | CTTCAGTGCTGTTGGGAGAG+AGG | - | chr4_1:77309693-77309712 | None:intergenic | 55.0% |
| !! | GGGGGCATTAAGCTCTTGAG+GGG | + | chr4_1:77310610-77310629 | Msa0573980:intron | 55.0% |
| GGCATTAAGCTCTTGAGGGG+AGG | + | chr4_1:77310613-77310632 | Msa0573980:intron | 55.0% | |
| GAGGGGAGGAAGGCAGAAAT+TGG | + | chr4_1:77310627-77310646 | Msa0573980:intron | 55.0% | |
| !! | TTAACCCACTTGGGTTGGCC+TGG | + | chr4_1:77311217-77311236 | Msa0573980:CDS | 55.0% |
| !! | TTGGCCTGGTGGTGTTGACT+TGG | + | chr4_1:77311231-77311250 | Msa0573980:CDS | 55.0% |
| !! | TGGCCTGGTGGTGTTGACTT+GGG | + | chr4_1:77311232-77311251 | Msa0573980:CDS | 55.0% |
| !! | GTGGTGTTGACTTGGGACCT+GGG | + | chr4_1:77311239-77311258 | Msa0573980:CDS | 55.0% |
| !! | TCCTCGGTGCCAATTTGGGT+GGG | + | chr4_1:77311296-77311315 | Msa0573980:intron | 55.0% |
| !! | AGACGGGGCTTTGGGAAAGA+GGG | - | chr4_1:77311454-77311473 | None:intergenic | 55.0% |
| GGTCAGTTATTCAGGGACGG+AGG | - | chr4_1:77312261-77312280 | None:intergenic | 55.0% | |
| ACCACCAGGCCAACCCAAGT+GGG | - | chr4_1:77311224-77311243 | None:intergenic | 60.0% | |
| GGTCCCAAGTCAACACCACC+AGG | - | chr4_1:77311238-77311257 | None:intergenic | 60.0% | |
| !! | GGTGGTGTTGACTTGGGACC+TGG | + | chr4_1:77311238-77311257 | Msa0573980:CDS | 60.0% |
| ! | TTGAGGAGGAGCACACTCCC+AGG | - | chr4_1:77311259-77311278 | None:intergenic | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTCA+AGG | + | chr4_1:77311258-77311277 | Msa0573980:CDS | 60.0% |
| !! | CTCCTCGGTGCCAATTTGGG+TGG | + | chr4_1:77311295-77311314 | Msa0573980:intron | 60.0% |
| !! | GAGACGGGGCTTTGGGAAAG+AGG | - | chr4_1:77311455-77311474 | None:intergenic | 60.0% |
| TAGGGGAGAGACGGGGCTTT+GGG | - | chr4_1:77311462-77311481 | None:intergenic | 60.0% | |
| ATAGGGGAGAGACGGGGCTT+TGG | - | chr4_1:77311463-77311482 | None:intergenic | 60.0% | |
| GTTCACAGTCGGCACCCACC+AGG | + | chr4_1:77310515-77310534 | Msa0573980:CDS | 65.0% | |
| !! | ACCCACTTGGGTTGGCCTGG+TGG | + | chr4_1:77311220-77311239 | Msa0573980:CDS | 65.0% |
| CACCACCAGGCCAACCCAAG+TGG | - | chr4_1:77311225-77311244 | None:intergenic | 65.0% | |
| GCCCACCCAAATTGGCACCG+AGG | - | chr4_1:77311300-77311319 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 77308719 | 77312762 | 77308719 | ID=Msa0573980;Name=Msa0573980 |
| chr4_1 | mRNA | 77308719 | 77312762 | 77308719 | ID=Msa0573980-mRNA-1;Parent=Msa0573980;Name=Msa0573980-mRNA-1;_AED=0.27;_eAED=0.32;_QI=78|0.62|0.77|0.88|1|1|9|0|306 |
| chr4_1 | exon | 77308719 | 77308928 | 77308719 | ID=Msa0573980-mRNA-1:exon:27213;Parent=Msa0573980-mRNA-1 |
| chr4_1 | exon | 77309019 | 77309133 | 77309019 | ID=Msa0573980-mRNA-1:exon:27214;Parent=Msa0573980-mRNA-1 |
| chr4_1 | exon | 77309705 | 77309752 | 77309705 | ID=Msa0573980-mRNA-1:exon:27215;Parent=Msa0573980-mRNA-1 |
| chr4_1 | exon | 77310288 | 77310561 | 77310288 | ID=Msa0573980-mRNA-1:exon:27216;Parent=Msa0573980-mRNA-1 |
| chr4_1 | exon | 77310969 | 77311056 | 77310969 | ID=Msa0573980-mRNA-1:exon:27217;Parent=Msa0573980-mRNA-1 |
| chr4_1 | exon | 77311208 | 77311279 | 77311208 | ID=Msa0573980-mRNA-1:exon:27218;Parent=Msa0573980-mRNA-1 |
| chr4_1 | exon | 77311628 | 77311693 | 77311628 | ID=Msa0573980-mRNA-1:exon:27219;Parent=Msa0573980-mRNA-1 |
| chr4_1 | exon | 77312103 | 77312171 | 77312103 | ID=Msa0573980-mRNA-1:exon:27220;Parent=Msa0573980-mRNA-1 |
| chr4_1 | exon | 77312706 | 77312762 | 77312706 | ID=Msa0573980-mRNA-1:exon:27221;Parent=Msa0573980-mRNA-1 |
| chr4_1 | five_prime_UTR | 77308719 | 77308796 | 77308719 | ID=Msa0573980-mRNA-1:five_prime_utr;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77308797 | 77308928 | 77308797 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77309019 | 77309133 | 77309019 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77309705 | 77309752 | 77309705 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77310288 | 77310561 | 77310288 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77310969 | 77311056 | 77310969 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77311208 | 77311279 | 77311208 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77311628 | 77311693 | 77311628 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77312103 | 77312171 | 77312103 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| chr4_1 | CDS | 77312706 | 77312762 | 77312706 | ID=Msa0573980-mRNA-1:cds;Parent=Msa0573980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
