AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0529890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529890 MtrunA17_Chr4g0001231 95.320 641 15 1 1 641 1 626 0.0 1233
Msa0529890 MtrunA17_Chr4g0070931 85.559 644 74 5 1 640 1 629 0.0 1049
Msa0529890 MtrunA17_Chr4g0074301 84.783 644 79 5 1 640 1 629 0.0 1035
Msa0529890 MtrunA17_Chr4g0074271 78.534 382 64 3 1 381 18 382 0.0 542
Msa0529890 MtrunA17_Chr4g0074271 39.910 223 121 4 410 632 241 450 1.92e-30 124
Msa0529890 MtrunA17_Chr3g0111661 42.314 657 339 10 1 637 1 637 7.10e-168 494
Msa0529890 MtrunA17_Chr5g0435301 40.060 669 348 14 5 640 472 1120 1.15e-140 438
Msa0529890 MtrunA17_Chr5g0435301 44.231 104 54 4 1 102 1 102 3.82e-16 82.8
Msa0529890 MtrunA17_Chr5g0435301 43.023 86 43 3 19 103 131 211 4.53e-14 75.9
Msa0529890 MtrunA17_Chr5g0435301 41.860 86 45 2 19 103 247 328 7.14e-14 75.5
Msa0529890 MtrunA17_Chr5g0435301 40.426 94 52 3 5 94 353 446 6.52e-12 68.9
Msa0529890 MtrunA17_Chr2g0328251 35.994 689 353 17 13 629 10 682 4.76e-109 344
Msa0529890 MtrunA17_Chr2g0328241 34.337 664 344 14 31 629 30 666 1.38e-97 313
Msa0529890 MtrunA17_Chr4g0024031 32.357 683 340 17 33 639 32 668 2.37e-83 275
Msa0529890 MtrunA17_Chr4g0071151 44.444 261 114 4 397 639 4 251 1.97e-62 207
Msa0529890 MtrunA17_Chr3g0111741 50.685 219 104 4 423 640 123 338 8.87e-56 193
Msa0529890 MtrunA17_Chr2g0328231 46.025 239 110 5 406 629 120 354 1.77e-54 190
Msa0529890 MtrunA17_Chr3g0111731 42.920 226 115 4 416 640 2 214 3.84e-42 152
Msa0529890 MtrunA17_Chr2g0327251 29.150 247 158 3 115 345 79 324 2.95e-25 110
Msa0529890 MtrunA17_Chr3g0111691 53.846 78 35 1 563 640 14 90 2.31e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529890 AT1G15910.1 55.205 634 255 6 18 639 17 633 0.0 661
Msa0529890 AT4G00380.1 53.555 633 266 5 19 639 18 634 0.0 641
Msa0529890 AT4G00380.3 53.555 633 266 5 19 639 18 634 0.0 641
Msa0529890 AT4G00380.2 50.476 630 262 6 19 639 18 606 0.0 594
Msa0529890 AT1G80790.1 52.756 635 268 10 19 640 19 634 0.0 586
Msa0529890 AT1G80790.2 52.756 635 268 10 19 640 19 634 0.0 586
Msa0529890 AT3G48670.2 40.465 645 344 12 16 640 21 645 6.98e-145 436
Msa0529890 AT3G48670.1 40.465 645 344 12 16 640 21 645 6.98e-145 436
Msa0529890 AT3G48670.3 40.465 645 344 12 16 640 21 645 6.98e-145 436
Msa0529890 AT1G80790.3 52.137 468 194 8 19 474 19 468 1.51e-143 426
Msa0529890 AT3G12550.5 35.385 650 370 12 16 636 5 633 6.84e-113 352
Msa0529890 AT3G12550.4 35.330 651 370 12 16 636 5 634 3.51e-112 350
Msa0529890 AT3G12550.2 35.330 651 370 12 16 636 5 634 3.51e-112 350
Msa0529890 AT3G12550.1 35.330 651 370 12 16 636 5 634 3.51e-112 350
Msa0529890 AT1G13790.2 37.658 555 302 8 93 630 197 724 5.35e-105 335
Msa0529890 AT1G13790.2 38.272 81 50 0 12 92 3 83 2.42e-12 70.5
Msa0529890 AT1G13790.1 37.658 555 302 8 93 630 197 724 5.35e-105 335
Msa0529890 AT1G13790.1 38.272 81 50 0 12 92 3 83 2.42e-12 70.5
Msa0529890 AT3G12550.3 32.982 570 333 11 16 557 5 553 5.79e-85 278
Msa0529890 AT5G59390.1 33.633 556 311 17 113 639 30 556 1.37e-76 255
Msa0529890 AT5G59390.5 33.633 556 311 17 113 639 30 556 1.37e-76 255
Msa0529890 AT5G59390.2 33.453 556 307 17 113 639 30 551 1.66e-75 252
Msa0529890 AT5G59390.4 33.453 556 307 17 113 639 30 551 1.66e-75 252
Msa0529890 AT5G59390.3 33.453 556 307 17 113 639 30 551 1.66e-75 252
Msa0529890 AT4G01180.1 33.029 548 299 16 113 629 28 538 6.97e-70 237
Msa0529890 AT4G01780.1 32.347 473 205 8 170 640 111 470 1.14e-62 215
Msa0529890 AT3G29375.3 44.776 201 105 2 439 639 32 226 3.63e-46 163
Msa0529890 AT3G29375.1 44.776 201 105 2 439 639 155 349 1.33e-44 163
Msa0529890 AT3G29375.2 41.406 128 68 3 439 566 32 152 1.30e-18 84.3
Msa0529890 AT2G16490.1 43.243 74 42 0 566 639 75 148 8.35e-15 73.6

Find 160 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTGTAACCACTTTAAA+AGG 0.096361 4_1:-3697422 None:intergenic
CAACTGAAGGATCTTGTTTA+AGG 0.147603 4_1:-3696682 None:intergenic
CTGTCGAGCTTTGCTCTTTA+TGG 0.200712 4_1:+3697369 Msa0529890:CDS
CTTGGTGCCAATATTAGTTT+TGG 0.243764 4_1:-3697267 None:intergenic
ATGGAAATTGAAGAACTAAA+AGG 0.270508 4_1:+3696738 Msa0529890:CDS
GGAAGACAAAATAGAAAGTT+TGG 0.287888 4_1:+3696842 Msa0529890:CDS
ATAAGCAAATCACATGATTC+TGG 0.315654 4_1:+3695048 Msa0529890:CDS
TACAAAGTGAAGAACAATAA+TGG 0.316359 4_1:+3694760 Msa0529890:CDS
TTGGAATTCCATGGACTTGC+AGG 0.324273 4_1:+3695236 Msa0529890:CDS
AATAGAAAGTTTGGAAGATA+TGG 0.336318 4_1:+3696851 Msa0529890:CDS
TTCTGATGAAGCTGGGATAA+AGG 0.336391 4_1:+3697346 Msa0529890:CDS
AAAGCAGGAATTCAAATATA+AGG 0.338005 4_1:+3694816 Msa0529890:CDS
TGTGGAACTTCAAAGAAAAT+AGG 0.338398 4_1:+3697694 Msa0529890:CDS
ACTGGTGCCAAAACTAATAT+TGG 0.346735 4_1:+3697260 Msa0529890:CDS
AGAAAAGTTGAGTAATGAAT+TGG 0.351658 4_1:+3695702 Msa0529890:CDS
GAAATAATTAGTCAGAATAT+AGG 0.353567 4_1:-3698905 None:intergenic
GATGAAATTGCAGAGGAAAA+TGG 0.359851 4_1:-3693957 None:intergenic
CCTGTAGTTCATCATTGCTT+TGG 0.360050 4_1:-3696908 None:intergenic
CAGGACAGTTCAGAGATTTA+CGG 0.365740 4_1:+3695255 Msa0529890:CDS
TGAGGAGGTACGAAGGATAT+TGG 0.370766 4_1:+3695672 Msa0529890:CDS
CGATCAAGAGAGGCAGAAAC+TGG 0.373050 4_1:+3695786 Msa0529890:CDS
ATGAAGTATGAAACTGTTAC+TGG 0.375794 4_1:+3698958 Msa0529890:three_prime_UTR
CCAGCCCTTAACTCTTCATA+TGG 0.378071 4_1:-3694733 None:intergenic
AGAAACCATATGAAGAGTTA+AGG 0.381900 4_1:+3694728 Msa0529890:CDS
TCTGCTCCTTTGAGGCCAAC+TGG 0.386894 4_1:-3696478 None:intergenic
CCAGTGGTGGGTATACTGTT+TGG 0.391573 4_1:+3697667 Msa0529890:CDS
CAGTGGTGGGTATACTGTTT+GGG 0.392443 4_1:+3697668 Msa0529890:CDS
ACAAAGTGAAGAACAATAAT+GGG 0.394132 4_1:+3694761 Msa0529890:CDS
ATATAGCTGTCCAACGAAAA+TGG 0.395372 4_1:-3698791 None:intergenic
GATCTGTTGCAGCATGCATC+TGG 0.396114 4_1:+3694838 Msa0529890:CDS
TCAGAAAAGGAACGTGAAAA+TGG 0.399265 4_1:-3693925 None:intergenic
AGCTATCTTCTGCTCCTTTG+AGG 0.404036 4_1:-3696486 None:intergenic
GGCTGTTCATACGTTCTTGA+TGG 0.404762 4_1:+3695107 Msa0529890:CDS
TTAGTACCTCACGCTTGTTT+AGG 0.407923 4_1:-3695762 None:intergenic
ATAATTGTCCAGGGTCGATT+GGG 0.410920 4_1:+3695301 Msa0529890:CDS
GTCAAGGTCTCCCATCCTCT+TGG 0.419346 4_1:-3697285 None:intergenic
CAGGCTTGTTGAAGAGCAAA+AGG 0.422308 4_1:+3696523 Msa0529890:CDS
GAAGTACATCATATCTCAAT+CGG 0.422729 4_1:+3698752 Msa0529890:three_prime_UTR
CTTGTTTAGGTCTCTGCTCC+AGG 0.422956 4_1:-3695749 None:intergenic
TATTAAAACTCACTCCTCCT+AGG 0.429950 4_1:+3693877 Msa0529890:five_prime_UTR
TGGAAATTGAAGAACTAAAA+GGG 0.432185 4_1:+3696739 Msa0529890:CDS
CAGTTCAGAGATTTACGGTT+GGG 0.434103 4_1:+3695260 Msa0529890:CDS
TATAATTGTCCAGGGTCGAT+TGG 0.446459 4_1:+3695300 Msa0529890:CDS
ACTTCAACAATGACTGGAAT+GGG 0.453119 4_1:+3695154 Msa0529890:CDS
CTGCAAGTCATGAAACATCT+TGG 0.454930 4_1:+3696765 Msa0529890:CDS
GAAACCATATGAAGAGTTAA+GGG 0.456039 4_1:+3694729 Msa0529890:CDS
CAGTTTCTGCCTCTCTTGAT+CGG 0.457451 4_1:-3695785 None:intergenic
GAAGATGATTATAATTGTCC+AGG 0.464276 4_1:+3695291 Msa0529890:CDS
TCAAAGCCGGGCGAGGTACT+TGG 0.465289 4_1:-3694957 None:intergenic
TAGCTGATGAGAATGTCTTC+AGG 0.469727 4_1:+3696504 Msa0529890:CDS
CAACTGGAGTGATTGATTCC+TGG 0.474236 4_1:-3696462 None:intergenic
GGTATACTGTTTGGGAGCTG+TGG 0.476632 4_1:+3697676 Msa0529890:CDS
TACAAAAGCTGAAGAAGGAA+TGG 0.478989 4_1:+3697586 Msa0529890:CDS
TAATATCAATCTCATTTGCC+AGG 0.479312 4_1:-3695410 None:intergenic
GGAAGAGATGAATTCAGAGT+TGG 0.479922 4_1:+3696821 Msa0529890:CDS
ATCACTCCAGTTGGCCTCAA+AGG 0.480055 4_1:+3696472 Msa0529890:CDS
AAAACAGAAGGCAAACCATC+TGG 0.480375 4_1:+3694891 Msa0529890:CDS
CGAGCTTTGCTCTTTATGGC+AGG 0.485391 4_1:+3697373 Msa0529890:CDS
TCCAAGTTGAGAACTACGTT+TGG 0.494414 4_1:+3695001 Msa0529890:CDS
TTATAGACTTCAACAATGAC+TGG 0.495035 4_1:+3695148 Msa0529890:CDS
AAAGGTTTGCCCTACTCACT+TGG 0.496814 4_1:+3696541 Msa0529890:CDS
ACAAAAGCTGAAGAAGGAAT+GGG 0.498002 4_1:+3697587 Msa0529890:CDS
ATCTCAACAAGATGCAGTAT+AGG 0.500867 4_1:+3695442 Msa0529890:CDS
ATGGAAGCTCAGCTCAGAAA+AGG 0.500964 4_1:-3693938 None:intergenic
ATTAAAACTCACTCCTCCTA+GGG 0.504234 4_1:+3693878 Msa0529890:five_prime_UTR
TCTCTGTAACCACTTTAAAA+GGG 0.509171 4_1:-3697421 None:intergenic
ACTTAGGTGTCCGTATTGCT+CGG 0.510947 4_1:+3694786 Msa0529890:CDS
AACTACGTTTGGCCGTGGAC+AGG 0.513586 4_1:+3695012 Msa0529890:CDS
GAATTTAACGCTTATTGTCA+AGG 0.513944 4_1:+3696881 Msa0529890:CDS
CTAATTTAAGTCTGAACTGA+AGG 0.521326 4_1:-3698855 None:intergenic
TTCAGTAGAAAGATAGAAGT+AGG 0.523707 4_1:+3698820 Msa0529890:three_prime_UTR
TAATATTGGCACCAAGAGGA+TGG 0.524177 4_1:+3697274 Msa0529890:CDS
TATGTCCTTGAGTAGGATGC+TGG 0.524242 4_1:+3695479 Msa0529890:CDS
CCAAACAGTATACCCACCAC+TGG 0.525403 4_1:-3697667 None:intergenic
CCAAAGCAATGATGAACTAC+AGG 0.526461 4_1:+3696908 Msa0529890:CDS
CTTAAACAAGATCCTTCAGT+TGG 0.526740 4_1:+3696683 Msa0529890:CDS
ACGTAGTTCTCAACTTGGAC+AGG 0.526836 4_1:-3694997 None:intergenic
GCCAAACGTAGTTCTCAACT+TGG 0.528155 4_1:-3695002 None:intergenic
TGAACTGTCCTGCAAGTCCA+TGG 0.528763 4_1:-3695244 None:intergenic
AAGAGAGGAGGATAGGCAAA+AGG 0.532512 4_1:+3697777 Msa0529890:exon
AAATAGCATTGTGGAAAACC+TGG 0.534545 4_1:+3695392 Msa0529890:CDS
GACTTCAACAATGACTGGAA+TGG 0.535886 4_1:+3695153 Msa0529890:CDS
TCAGCCTTCCTTTGTTGCGA+AGG 0.537542 4_1:-3695329 None:intergenic
CTTAGGTGTCCGTATTGCTC+GGG 0.537566 4_1:+3694787 Msa0529890:CDS
ATCTGGAGTAGGCAAAGGTT+CGG 0.537904 4_1:+3694855 Msa0529890:CDS
ATCATATCTCAATCGGGAGG+TGG 0.539320 4_1:+3698759 Msa0529890:three_prime_UTR
GATGGGAGACCTTGACCAGA+AGG 0.539667 4_1:+3697292 Msa0529890:CDS
GTTCATACGTTCTTGATGGA+TGG 0.543612 4_1:+3695111 Msa0529890:CDS
TTCATTATAAACAAGTCAAG+TGG 0.544874 4_1:-3698940 None:intergenic
AAATGAGGAAGCTTGATACC+TGG 0.545605 4_1:+3695731 Msa0529890:CDS
TCCAAACTACCAGAGAGAAA+AGG 0.547284 4_1:+3696653 Msa0529890:intron
TTGAGAACTACGTTTGGCCG+TGG 0.547439 4_1:+3695007 Msa0529890:CDS
GAAACTACAAAAGCTGAAGA+AGG 0.547462 4_1:+3697581 Msa0529890:CDS
CCATATGAAGAGTTAAGGGC+TGG 0.547915 4_1:+3694733 Msa0529890:CDS
AAACAGAAGCACAAAACAGA+AGG 0.549041 4_1:+3694879 Msa0529890:CDS
TGTCCTTCCAGAAAGACTCC+AGG 0.550329 4_1:+3696444 Msa0529890:intron
ATGCAAGTGAGCTTGAGAAA+TGG 0.551886 4_1:+3695184 Msa0529890:CDS
ACGACAGCTAAGGTCAAAGC+CGG 0.553034 4_1:-3694970 None:intergenic
ATTTGCTAAGTACAAACCAT+TGG 0.554128 4_1:+3695086 Msa0529890:CDS
AGCAGACCAAGTACCTCGCC+CGG 0.554305 4_1:+3694951 Msa0529890:CDS
ACTGGAAGAGGACAAGAAGA+AGG 0.555312 4_1:+3695804 Msa0529890:CDS
TGATTCTGGATACTTGCAAA+AGG 0.555382 4_1:+3695062 Msa0529890:CDS
AGTTCTCAACTTGGACAGGT+TGG 0.556864 4_1:-3694993 None:intergenic
GAAACTGTTACTGGTTATCA+CGG 0.561539 4_1:+3698967 Msa0529890:three_prime_UTR
GCTAAGGTCAAAGCCGGGCG+AGG 0.561717 4_1:-3694964 None:intergenic
AGAAGTGATCACTTATATTG+TGG 0.563683 4_1:+3697731 Msa0529890:CDS
TTGCAGCATGCATCTGGAGT+AGG 0.566883 4_1:+3694844 Msa0529890:CDS
TAAGCGCAAGAGAGGAGGAT+AGG 0.567186 4_1:+3697770 Msa0529890:CDS
CAGGAATCAATCACTCCAGT+TGG 0.571555 4_1:+3696463 Msa0529890:CDS
ATGATGAACTACAGGAAGCT+CGG 0.574508 4_1:+3696916 Msa0529890:CDS
AGAACAATAATGGGACACTT+AGG 0.574673 4_1:+3694770 Msa0529890:CDS
AAGTACATCATATCTCAATC+GGG 0.577063 4_1:+3698753 Msa0529890:three_prime_UTR
AATTGAATGCACGAAACCCT+AGG 0.578610 4_1:-3693894 None:intergenic
AGGTACTCCCCAATCGACCC+TGG 0.579229 4_1:-3695309 None:intergenic
AAAACTTTGCAAGAGCCAGA+TGG 0.582131 4_1:-3694906 None:intergenic
AACGAGTACAACCCCAGTGG+TGG 0.585705 4_1:+3697654 Msa0529890:CDS
AATATTGGCACCAAGAGGAT+GGG 0.586149 4_1:+3697275 Msa0529890:CDS
GACAGGTTGGACGACAGCTA+AGG 0.586592 4_1:-3694980 None:intergenic
AGTACCTTCGCAACAAAGGA+AGG 0.587192 4_1:+3695325 Msa0529890:CDS
AGAGAGGCAGAAACTGGAAG+AGG 0.587763 4_1:+3695792 Msa0529890:CDS
AAAATGTGAAGAACTCAGCT+TGG 0.590276 4_1:+3697396 Msa0529890:CDS
CAAACAGTATACCCACCACT+GGG 0.590617 4_1:-3697666 None:intergenic
GGGGAGTACCTTCGCAACAA+AGG 0.594476 4_1:+3695321 Msa0529890:CDS
CTCCTCCAGCATCCTACTCA+AGG 0.596087 4_1:-3695484 None:intergenic
CAACTTAAGCGCAAGAGAGG+AGG 0.597370 4_1:+3697765 Msa0529890:CDS
GATCAGTGAGTCTGAGATCG+AGG 0.600157 4_1:+3694696 Msa0529890:CDS
AAGCAACTTAAGCGCAAGAG+AGG 0.605662 4_1:+3697762 Msa0529890:CDS
CGACAGCTAAGGTCAAAGCC+GGG 0.609400 4_1:-3694969 None:intergenic
CATGCATCTGGAGTAGGCAA+AGG 0.611854 4_1:+3694850 Msa0529890:CDS
AGAAGACTATGTCCTTGAGT+AGG 0.612892 4_1:+3695472 Msa0529890:CDS
ACAGTTCAGAGATTTACGGT+TGG 0.615927 4_1:+3695259 Msa0529890:CDS
GTTATCACGGTTATCGCATA+CGG 0.618789 4_1:+3698980 Msa0529890:three_prime_UTR
GAACTTCAAAGAAAATAGGA+AGG 0.621964 4_1:+3697698 Msa0529890:CDS
AGGTACTAACCGATCAAGAG+AGG 0.623269 4_1:+3695776 Msa0529890:CDS
AAGATGATTATAATTGTCCA+GGG 0.627300 4_1:+3695292 Msa0529890:CDS
CATGCAGCGTAAAGCTCGTG+AGG 0.627326 4_1:+3695654 Msa0529890:CDS
TTGACAAGTATGCCTGTCCA+CGG 0.630837 4_1:-3695024 None:intergenic
AAACTACCAGAGAGAAAAGG+AGG 0.630982 4_1:+3696656 Msa0529890:intron
TAATTGTCCAGGGTCGATTG+GGG 0.634670 4_1:+3695302 Msa0529890:CDS
TGGTTTGAGACTAAACGTTG+TGG 0.637320 4_1:+3695204 Msa0529890:CDS
GTCCTTGAGTAGGATGCTGG+AGG 0.639598 4_1:+3695482 Msa0529890:CDS
GGGTTAAATGAAATGCTGAC+TGG 0.640070 4_1:+3697242 Msa0529890:CDS
TTCGCAACAAAGGAAGGCTG+AGG 0.640972 4_1:+3695331 Msa0529890:CDS
AAGCTCGTGAGGAGGTACGA+AGG 0.645630 4_1:+3695665 Msa0529890:CDS
AAGAACGTATGAACAGCCAA+TGG 0.648751 4_1:-3695102 None:intergenic
CTACCAGAGAGAAAAGGAGG+AGG 0.652051 4_1:+3696659 Msa0529890:intron
TCTTGGAGATCAAGATGATG+CGG 0.666276 4_1:+3696782 Msa0529890:CDS
ACGAGTACAACCCCAGTGGT+GGG 0.666856 4_1:+3697655 Msa0529890:CDS
CAAAAGCTGAAGAAGGAATG+GGG 0.672943 4_1:+3697588 Msa0529890:CDS
TCAAAGCAGAAATAGCATTG+TGG 0.673917 4_1:+3695383 Msa0529890:CDS
AAACTAATATTGGCACCAAG+AGG 0.676823 4_1:+3697270 Msa0529890:CDS
TACATCATATCTCAATCGGG+AGG 0.678077 4_1:+3698756 Msa0529890:three_prime_UTR
GCAGCGTAAAGCTCGTGAGG+AGG 0.682044 4_1:+3695657 Msa0529890:CDS
TTACAGCGATGAAATTGCAG+AGG 0.696307 4_1:-3693964 None:intergenic
CAGAGACCTAAACAAGCGTG+AGG 0.704526 4_1:+3695756 Msa0529890:CDS
CTTGATGGATGGTAACTGCG+TGG 0.712841 4_1:+3695122 Msa0529890:CDS
TGAATGCACGAAACCCTAGG+AGG 0.720425 4_1:-3693891 None:intergenic
TACAGAGAATGATAACCATG+TGG 0.726744 4_1:+3697436 Msa0529890:CDS
AAACAGTATACCCACCACTG+GGG 0.786062 4_1:-3697665 None:intergenic
GTTAACGAGTACAACCCCAG+TGG 0.812173 4_1:+3697651 Msa0529890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAATATATTAATTT+AGG + chr4_1:3697963-3697982 Msa0529890:intron 0.0%
!! AAATATCAATGTAATATATA+TGG + chr4_1:3696175-3696194 Msa0529890:intron 10.0%
!!! GTGATATTAAATTTCATTTT+AGG + chr4_1:3694385-3694404 Msa0529890:intron 15.0%
!!! CAGTTAAAAATATTTGAAAT+GGG - chr4_1:3695864-3695883 None:intergenic 15.0%
!!! AGTAACATTTCTTTTTATAT+AGG - chr4_1:3696994-3697013 None:intergenic 15.0%
!!! TTTCAAATTTCTATTGTTTT+AGG + chr4_1:3697220-3697239 Msa0529890:intron 15.0%
!!! TTCAAATTTCTATTGTTTTA+GGG + chr4_1:3697221-3697240 Msa0529890:intron 15.0%
!! AAATAGTGTAATAATTAACA+TGG + chr4_1:3697513-3697532 Msa0529890:intron 15.0%
!!! GTTTATTTATTTTATTCCAA+TGG + chr4_1:3699008-3699027 Msa0529890:three_prime_UTR 15.0%
!! GAAGAATTCAAAGAAAAAAA+CGG - chr4_1:3694012-3694031 None:intergenic 20.0%
!! AACAAAAACAAATACTGTAT+TGG - chr4_1:3694108-3694127 None:intergenic 20.0%
!!! TAAGTTACATTTTAAAATGC+AGG + chr4_1:3694330-3694349 Msa0529890:intron 20.0%
!!! TTAAATTTCATTTTAGGTCA+TGG + chr4_1:3694391-3694410 Msa0529890:intron 20.0%
!!! AAAAAAATGAGACATTTTTG+TGG - chr4_1:3695619-3695638 None:intergenic 20.0%
!! GCAGTTAAAAATATTTGAAA+TGG - chr4_1:3695865-3695884 None:intergenic 20.0%
!!! CACTTTTTTATTCAAATCAA+GGG - chr4_1:3696041-3696060 None:intergenic 20.0%
!! AAATTTGAAAAAAATGAGAG+GGG - chr4_1:3697210-3697229 None:intergenic 20.0%
!! GAAATTTGAAAAAAATGAGA+GGG - chr4_1:3697211-3697230 None:intergenic 20.0%
!! AGAAATTTGAAAAAAATGAG+AGG - chr4_1:3697212-3697231 None:intergenic 20.0%
!!! TCAAATTTCTATTGTTTTAG+GGG + chr4_1:3697222-3697241 Msa0529890:intron 20.0%
!! AAAGTTTATAAATGAAAAGC+TGG + chr4_1:3698216-3698235 Msa0529890:intron 20.0%
!!! TAATTTTGAAAAGCAAAAGA+TGG + chr4_1:3698546-3698565 Msa0529890:intron 20.0%
!! AACAAAAGAGAAAAAAAAAC+TGG - chr4_1:3698604-3698623 None:intergenic 20.0%
!!! AAACTTGTTTAGAATTTAAC+AGG - chr4_1:3698711-3698730 None:intergenic 20.0%
!! GAAATAATTAGTCAGAATAT+AGG - chr4_1:3698908-3698927 None:intergenic 20.0%
! AGTTGCTTATAAGCTAATTT+AGG + chr4_1:3694150-3694169 Msa0529890:intron 25.0%
!!! TACATTTTAAAATGCAGGAA+TGG + chr4_1:3694335-3694354 Msa0529890:intron 25.0%
!! AAAAAAAGCATAGCTAAGAA+TGG - chr4_1:3694475-3694494 None:intergenic 25.0%
!!! TTTTTTTGTGATGGGATTAA+GGG + chr4_1:3694488-3694507 Msa0529890:intron 25.0%
! TACAAAGTGAAGAACAATAA+TGG + chr4_1:3694760-3694779 Msa0529890:CDS 25.0%
! ACAAAGTGAAGAACAATAAT+GGG + chr4_1:3694761-3694780 Msa0529890:CDS 25.0%
! AAAGCAGGAATTCAAATATA+AGG + chr4_1:3694816-3694835 Msa0529890:CDS 25.0%
! AAGATGATTATAATTGTCCA+GGG + chr4_1:3695292-3695311 Msa0529890:CDS 25.0%
!!! TTTTGCCTTATTGTATAGAA+TGG + chr4_1:3695565-3695584 Msa0529890:intron 25.0%
!! TTTGCCTTATTGTATAGAAT+GGG + chr4_1:3695566-3695585 Msa0529890:intron 25.0%
! AGAAAAGTTGAGTAATGAAT+TGG + chr4_1:3695702-3695721 Msa0529890:CDS 25.0%
! ATGAATTGGATGAAAAAATG+AGG + chr4_1:3695716-3695735 Msa0529890:CDS 25.0%
!!! GCACTTTTTTATTCAAATCA+AGG - chr4_1:3696042-3696061 None:intergenic 25.0%
! AAATGAATCCCAACTTTAAT+TGG + chr4_1:3696089-3696108 Msa0529890:intron 25.0%
!!! AAAAGCTTTTGATTATTGTG+AGG + chr4_1:3696152-3696171 Msa0529890:intron 25.0%
! ATTTCAACTCTACATAAATG+AGG - chr4_1:3696215-3696234 None:intergenic 25.0%
!! TTCCATTTCCAATTTTTGTT+TGG - chr4_1:3696724-3696743 None:intergenic 25.0%
! ATGGAAATTGAAGAACTAAA+AGG + chr4_1:3696738-3696757 Msa0529890:CDS 25.0%
! TGGAAATTGAAGAACTAAAA+GGG + chr4_1:3696739-3696758 Msa0529890:CDS 25.0%
! AATAGAAAGTTTGGAAGATA+TGG + chr4_1:3696851-3696870 Msa0529890:CDS 25.0%
!! AAATCTTATTTCCTAAAGAG+AGG - chr4_1:3697136-3697155 None:intergenic 25.0%
!! ATTACACTATTTCTCTATTG+AGG - chr4_1:3697505-3697524 None:intergenic 25.0%
! ACATGGTAATATTGTTGTAT+TGG + chr4_1:3697530-3697549 Msa0529890:intron 25.0%
!! CACTGACTAAAATAGTAATT+TGG + chr4_1:3697862-3697881 Msa0529890:intron 25.0%
!!! CAAAATGCTCTTTTAAGATA+TGG - chr4_1:3698036-3698055 None:intergenic 25.0%
! TTTATGAACGATGAAATGAT+TGG + chr4_1:3698086-3698105 Msa0529890:intron 25.0%
! CAAGTTATTCACATTCTATT+TGG + chr4_1:3698142-3698161 Msa0529890:intron 25.0%
! TAAGTTAACTAATAGCTACT+AGG + chr4_1:3698184-3698203 Msa0529890:intron 25.0%
! AAGTGGTTGTTAGAATTAAT+TGG + chr4_1:3698252-3698271 Msa0529890:intron 25.0%
! ACATGAAAGATATGTTCATA+TGG + chr4_1:3698300-3698319 Msa0529890:intron 25.0%
! TTACTAAAAGCTTTACCAAA+AGG + chr4_1:3698355-3698374 Msa0529890:intron 25.0%
!! TAAACTTTTGTCATTCCTTT+TGG - chr4_1:3698373-3698392 None:intergenic 25.0%
!!! CTTTTGTTTCTTACTCATAA+TGG + chr4_1:3698616-3698635 Msa0529890:intron 25.0%
! ATGGAAAAGTTTCTGATATT+TGG + chr4_1:3698635-3698654 Msa0529890:intron 25.0%
! TTCTAAACAAGTTTATCTTG+AGG + chr4_1:3698717-3698736 Msa0529890:intron 25.0%
!!! CTTTTTTATCTTTTGTCGAT+TGG + chr4_1:3698878-3698897 Msa0529890:three_prime_UTR 25.0%
! TTCATTATAAACAAGTCAAG+TGG - chr4_1:3698943-3698962 None:intergenic 25.0%
!!! TTGTTGCTGAGTTTTTTCTT+CGG + chr4_1:3694051-3694070 Msa0529890:intron 30.0%
! GTCATGGTTTATGTGATTTT+GGG + chr4_1:3694407-3694426 Msa0529890:intron 30.0%
! TCATGGTTTATGTGATTTTG+GGG + chr4_1:3694408-3694427 Msa0529890:intron 30.0%
!!! TAGCTATGCTTTTTTTGTGA+TGG + chr4_1:3694479-3694498 Msa0529890:intron 30.0%
!!! AGCTATGCTTTTTTTGTGAT+GGG + chr4_1:3694480-3694499 Msa0529890:intron 30.0%
!!! CTTTTTTTGTGATGGGATTA+AGG + chr4_1:3694487-3694506 Msa0529890:intron 30.0%
! ATTGTATGCCCTTTTTCTTT+TGG + chr4_1:3694586-3694605 Msa0529890:intron 30.0%
! TTGTATGCCCTTTTTCTTTT+GGG + chr4_1:3694587-3694606 Msa0529890:intron 30.0%
AGAAACCATATGAAGAGTTA+AGG + chr4_1:3694728-3694747 Msa0529890:CDS 30.0%
GAAACCATATGAAGAGTTAA+GGG + chr4_1:3694729-3694748 Msa0529890:CDS 30.0%
ATAAGCAAATCACATGATTC+TGG + chr4_1:3695048-3695067 Msa0529890:CDS 30.0%
! ATTTGCTAAGTACAAACCAT+TGG + chr4_1:3695086-3695105 Msa0529890:CDS 30.0%
TTATAGACTTCAACAATGAC+TGG + chr4_1:3695148-3695167 Msa0529890:CDS 30.0%
AAAAAAGGATTGGAATTCCA+TGG + chr4_1:3695227-3695246 Msa0529890:CDS 30.0%
GAAGATGATTATAATTGTCC+AGG + chr4_1:3695291-3695310 Msa0529890:CDS 30.0%
TAATATCAATCTCATTTGCC+AGG - chr4_1:3695413-3695432 None:intergenic 30.0%
! TTGCCTTATTGTATAGAATG+GGG + chr4_1:3695567-3695586 Msa0529890:intron 30.0%
TTTCCCCATTCTATACAATA+AGG - chr4_1:3695573-3695592 None:intergenic 30.0%
!!! TCATTTTTTTGTCAGAGTCA+AGG + chr4_1:3695629-3695648 Msa0529890:intron 30.0%
!!! CAAATTTTTTGCAAGGACAA+TGG - chr4_1:3695915-3695934 None:intergenic 30.0%
!!! GACAGATCAAATTTTTTGCA+AGG - chr4_1:3695922-3695941 None:intergenic 30.0%
GATTTGAATAACAATGTCCT+TGG + chr4_1:3696012-3696031 Msa0529890:intron 30.0%
TTCATTTAAAGAGAGTCAGT+AGG - chr4_1:3696076-3696095 None:intergenic 30.0%
! GCATTTTATATATTAGTGCG+TGG + chr4_1:3696264-3696283 Msa0529890:intron 30.0%
!!! AGCACATCTGGTTTTTTTTA+TGG - chr4_1:3696322-3696341 None:intergenic 30.0%
ACTGATGATTCAAAGTCTTA+AGG - chr4_1:3696385-3696404 None:intergenic 30.0%
! TTTTCATAACCAAGTGAGTA+GGG - chr4_1:3696553-3696572 None:intergenic 30.0%
ACTAGATGCCAAACAAAAAT+TGG + chr4_1:3696713-3696732 Msa0529890:CDS 30.0%
TGCCAAACAAAAATTGGAAA+TGG + chr4_1:3696719-3696738 Msa0529890:CDS 30.0%
TGCGGCTATTAAGAAAAAAA+TGG + chr4_1:3696800-3696819 Msa0529890:CDS 30.0%
GGAAGACAAAATAGAAAGTT+TGG + chr4_1:3696842-3696861 Msa0529890:CDS 30.0%
GAATTTAACGCTTATTGTCA+AGG + chr4_1:3696881-3696900 Msa0529890:CDS 30.0%
TGAAGAATACACGAAGATAA+AGG - chr4_1:3697039-3697058 None:intergenic 30.0%
TTCAAGATAACCAACTAACA+AGG + chr4_1:3697055-3697074 Msa0529890:intron 30.0%
! AGAAGAAAATCTTTTCTTGC+AGG - chr4_1:3697330-3697349 None:intergenic 30.0%
! TCTCTGTAACCACTTTAAAA+GGG - chr4_1:3697424-3697443 None:intergenic 30.0%
TTCTCTGTAACCACTTTAAA+AGG - chr4_1:3697425-3697444 None:intergenic 30.0%
! GTACTCGTTAACTTCTTTTA+AGG - chr4_1:3697643-3697662 None:intergenic 30.0%
TGTGGAACTTCAAAGAAAAT+AGG + chr4_1:3697694-3697713 Msa0529890:CDS 30.0%
GAACTTCAAAGAAAATAGGA+AGG + chr4_1:3697698-3697717 Msa0529890:CDS 30.0%
AGAAGTGATCACTTATATTG+TGG + chr4_1:3697731-3697750 Msa0529890:CDS 30.0%
TTAGTCAGTGAAACTATCAA+TGG - chr4_1:3697852-3697871 None:intergenic 30.0%
! AACAACTTTTAGACTCTTGT+CGG + chr4_1:3697925-3697944 Msa0529890:intron 30.0%
TGGTTTCCATAATTGAGTTA+TGG + chr4_1:3698106-3698125 Msa0529890:intron 30.0%
GGTTTCCATAATTGAGTTAT+GGG + chr4_1:3698107-3698126 Msa0529890:intron 30.0%
TCAAATATGCTAACAAGTCT+TGG + chr4_1:3698401-3698420 Msa0529890:intron 30.0%
TTATTAAATCGCTGCATTGA+CGG + chr4_1:3698471-3698490 Msa0529890:intron 30.0%
GAAGTACATCATATCTCAAT+CGG + chr4_1:3698752-3698771 Msa0529890:three_prime_UTR 30.0%
AAGTACATCATATCTCAATC+GGG + chr4_1:3698753-3698772 Msa0529890:three_prime_UTR 30.0%
TTCAGTAGAAAGATAGAAGT+AGG + chr4_1:3698820-3698839 Msa0529890:three_prime_UTR 30.0%
! ATAGAAGTAGGACATTTTCA+TGG + chr4_1:3698832-3698851 Msa0529890:three_prime_UTR 30.0%
CTAATTTAAGTCTGAACTGA+AGG - chr4_1:3698858-3698877 None:intergenic 30.0%
ATGAAGTATGAAACTGTTAC+TGG + chr4_1:3698958-3698977 Msa0529890:three_prime_UTR 30.0%
ATGTAAAAAAAGGCAACCAT+TGG - chr4_1:3699027-3699046 None:intergenic 30.0%
TATTAAAACTCACTCCTCCT+AGG + chr4_1:3693877-3693896 Msa0529890:five_prime_UTR 35.0%
ATTAAAACTCACTCCTCCTA+GGG + chr4_1:3693878-3693897 Msa0529890:five_prime_UTR 35.0%
TCAGAAAAGGAACGTGAAAA+TGG - chr4_1:3693928-3693947 None:intergenic 35.0%
GATGAAATTGCAGAGGAAAA+TGG - chr4_1:3693960-3693979 None:intergenic 35.0%
! GGTCATGGTTTATGTGATTT+TGG + chr4_1:3694406-3694425 Msa0529890:intron 35.0%
AAATGCAGTCTGCTACTAAA+TGG - chr4_1:3694541-3694560 None:intergenic 35.0%
! AGAACAATAATGGGACACTT+AGG + chr4_1:3694770-3694789 Msa0529890:CDS 35.0%
! TTTTTCTTTCCCGAGCAATA+CGG - chr4_1:3694799-3694818 None:intergenic 35.0%
! AAACAGAAGCACAAAACAGA+AGG + chr4_1:3694879-3694898 Msa0529890:CDS 35.0%
TGATTCTGGATACTTGCAAA+AGG + chr4_1:3695062-3695081 Msa0529890:CDS 35.0%
ACTTCAACAATGACTGGAAT+GGG + chr4_1:3695154-3695173 Msa0529890:CDS 35.0%
GACTAAACGTTGTGGAAAAA+AGG + chr4_1:3695212-3695231 Msa0529890:CDS 35.0%
AACGTTGTGGAAAAAAGGAT+TGG + chr4_1:3695217-3695236 Msa0529890:CDS 35.0%
TCAAAGCAGAAATAGCATTG+TGG + chr4_1:3695383-3695402 Msa0529890:CDS 35.0%
AAATAGCATTGTGGAAAACC+TGG + chr4_1:3695392-3695411 Msa0529890:CDS 35.0%
ATCTCAACAAGATGCAGTAT+AGG + chr4_1:3695442-3695461 Msa0529890:CDS 35.0%
! CTTCACAATGCTTTTGTTGA+AGG + chr4_1:3695516-3695535 Msa0529890:CDS 35.0%
ATTTGATCTGTCTTTCTCTG+TGG + chr4_1:3695930-3695949 Msa0529890:intron 35.0%
GATCAACCAAGAACATTAGT+AGG - chr4_1:3695959-3695978 None:intergenic 35.0%
GATTTGACTAACAATGTCGT+TGG + chr4_1:3695981-3696000 Msa0529890:intron 35.0%
! GCTTTTAGCATATAGACTCT+GGG - chr4_1:3696138-3696157 None:intergenic 35.0%
! AGCTTTTAGCATATAGACTC+TGG - chr4_1:3696139-3696158 None:intergenic 35.0%
GCATGTAAAGGTTAGAAAGT+GGG - chr4_1:3696354-3696373 None:intergenic 35.0%
AGCATGTAAAGGTTAGAAAG+TGG - chr4_1:3696355-3696374 None:intergenic 35.0%
TTCTAACCTTTACATGCTTG+AGG + chr4_1:3696357-3696376 Msa0529890:intron 35.0%
! CTTTTCATAACCAAGTGAGT+AGG - chr4_1:3696554-3696573 None:intergenic 35.0%
TTGAAGACATTCACAATGGA+TGG - chr4_1:3696621-3696640 None:intergenic 35.0%
TCAGTTGAAGACATTCACAA+TGG - chr4_1:3696625-3696644 None:intergenic 35.0%
! CAACTGAAGGATCTTGTTTA+AGG - chr4_1:3696685-3696704 None:intergenic 35.0%
CTTAAACAAGATCCTTCAGT+TGG + chr4_1:3696683-3696702 Msa0529890:CDS 35.0%
ACACGAAGATAAAGGTTAGA+AGG - chr4_1:3697031-3697050 None:intergenic 35.0%
AATCTATGCACCTTGTTAGT+TGG - chr4_1:3697068-3697087 None:intergenic 35.0%
! TCTTATTTCCTAAAGAGAGG+TGG - chr4_1:3697133-3697152 None:intergenic 35.0%
GTTCTGCTGTGAATATATTG+TGG + chr4_1:3697169-3697188 Msa0529890:intron 35.0%
! ACTGGTGCCAAAACTAATAT+TGG + chr4_1:3697260-3697279 Msa0529890:CDS 35.0%
!!! CTTGGTGCCAATATTAGTTT+TGG - chr4_1:3697270-3697289 None:intergenic 35.0%
AAACTAATATTGGCACCAAG+AGG + chr4_1:3697270-3697289 Msa0529890:CDS 35.0%
! AGATTTTCTTCTGATGAAGC+TGG + chr4_1:3697338-3697357 Msa0529890:CDS 35.0%
! GATTTTCTTCTGATGAAGCT+GGG + chr4_1:3697339-3697358 Msa0529890:CDS 35.0%
AAAATGTGAAGAACTCAGCT+TGG + chr4_1:3697396-3697415 Msa0529890:CDS 35.0%
TACAGAGAATGATAACCATG+TGG + chr4_1:3697436-3697455 Msa0529890:CDS 35.0%
GAAACTACAAAAGCTGAAGA+AGG + chr4_1:3697581-3697600 Msa0529890:CDS 35.0%
TACAAAAGCTGAAGAAGGAA+TGG + chr4_1:3697586-3697605 Msa0529890:CDS 35.0%
ACAAAAGCTGAAGAAGGAAT+GGG + chr4_1:3697587-3697606 Msa0529890:CDS 35.0%
ATATCAATGCAGTGCTAAAC+AGG - chr4_1:3697828-3697847 None:intergenic 35.0%
! ACAACTTTTAGACTCTTGTC+GGG + chr4_1:3697926-3697945 Msa0529890:intron 35.0%
TCACACCCATAACTCAATTA+TGG - chr4_1:3698115-3698134 None:intergenic 35.0%
ATGCAGCGATTTAATAACAC+AGG - chr4_1:3698468-3698487 None:intergenic 35.0%
! TATTAAATCGCTGCATTGAC+GGG + chr4_1:3698472-3698491 Msa0529890:intron 35.0%
CAAAATTATCCATGACAGAC+AGG - chr4_1:3698534-3698553 None:intergenic 35.0%
! GAAACTATGACCATTTTCGT+TGG + chr4_1:3698781-3698800 Msa0529890:three_prime_UTR 35.0%
ATATAGCTGTCCAACGAAAA+TGG - chr4_1:3698794-3698813 None:intergenic 35.0%
! GAAACTGTTACTGGTTATCA+CGG + chr4_1:3698967-3698986 Msa0529890:three_prime_UTR 35.0%
CCTGGCATACATGTAAAAAA+AGG - chr4_1:3699037-3699056 None:intergenic 35.0%
!!! CCTTTTTTTACATGTATGCC+AGG + chr4_1:3699034-3699053 Msa0529890:three_prime_UTR 35.0%
AATTGAATGCACGAAACCCT+AGG - chr4_1:3693897-3693916 None:intergenic 40.0%
TTACAGCGATGAAATTGCAG+AGG - chr4_1:3693967-3693986 None:intergenic 40.0%
GCACTCTCCCAAAAGAAAAA+GGG - chr4_1:3694597-3694616 None:intergenic 40.0%
TGCACTCTCCCAAAAGAAAA+AGG - chr4_1:3694598-3694617 None:intergenic 40.0%
! CATTTTTCGCACAGCTTCAA+TGG + chr4_1:3694648-3694667 Msa0529890:intron 40.0%
AAAACAGAAGGCAAACCATC+TGG + chr4_1:3694891-3694910 Msa0529890:CDS 40.0%
AAAACTTTGCAAGAGCCAGA+TGG - chr4_1:3694909-3694928 None:intergenic 40.0%
! TGGCTCTTGCAAAGTTTTTG+AGG + chr4_1:3694911-3694930 Msa0529890:CDS 40.0%
! TCCAAGTTGAGAACTACGTT+TGG + chr4_1:3695001-3695020 Msa0529890:CDS 40.0%
AAGAACGTATGAACAGCCAA+TGG - chr4_1:3695105-3695124 None:intergenic 40.0%
GTTCATACGTTCTTGATGGA+TGG + chr4_1:3695111-3695130 Msa0529890:CDS 40.0%
GACTTCAACAATGACTGGAA+TGG + chr4_1:3695153-3695172 Msa0529890:CDS 40.0%
ATGCAAGTGAGCTTGAGAAA+TGG + chr4_1:3695184-3695203 Msa0529890:CDS 40.0%
! TGGTTTGAGACTAAACGTTG+TGG + chr4_1:3695204-3695223 Msa0529890:CDS 40.0%
CAGGACAGTTCAGAGATTTA+CGG + chr4_1:3695255-3695274 Msa0529890:CDS 40.0%
ACAGTTCAGAGATTTACGGT+TGG + chr4_1:3695259-3695278 Msa0529890:CDS 40.0%
CAGTTCAGAGATTTACGGTT+GGG + chr4_1:3695260-3695279 Msa0529890:CDS 40.0%
TATAATTGTCCAGGGTCGAT+TGG + chr4_1:3695300-3695319 Msa0529890:CDS 40.0%
ATAATTGTCCAGGGTCGATT+GGG + chr4_1:3695301-3695320 Msa0529890:CDS 40.0%
AGAAGACTATGTCCTTGAGT+AGG + chr4_1:3695472-3695491 Msa0529890:CDS 40.0%
TGGGGAAAAAACACTTGCAT+TGG + chr4_1:3695585-3695604 Msa0529890:intron 40.0%
AAATGAGGAAGCTTGATACC+TGG + chr4_1:3695731-3695750 Msa0529890:CDS 40.0%
TTAGTACCTCACGCTTGTTT+AGG - chr4_1:3695765-3695784 None:intergenic 40.0%
TGGTCTCCTACTAATGTTCT+TGG + chr4_1:3695950-3695969 Msa0529890:intron 40.0%
ATTCAAATCAAGGGCAACCA+AGG - chr4_1:3696032-3696051 None:intergenic 40.0%
GTGGAAGGCCAATTAAAGTT+GGG - chr4_1:3696100-3696119 None:intergenic 40.0%
TGTGGAAGGCCAATTAAAGT+TGG - chr4_1:3696101-3696120 None:intergenic 40.0%
!! TAGACTCTGGGACAAATTAG+CGG - chr4_1:3696126-3696145 None:intergenic 40.0%
! ATTGATTCCTGGAGTCTTTC+TGG - chr4_1:3696454-3696473 None:intergenic 40.0%
TAGCTGATGAGAATGTCTTC+AGG + chr4_1:3696504-3696523 Msa0529890:CDS 40.0%
GTGAATGTCTTCAACTGATG+TGG + chr4_1:3696627-3696646 Msa0529890:intron 40.0%
TCCAAACTACCAGAGAGAAA+AGG + chr4_1:3696653-3696672 Msa0529890:intron 40.0%
! TCCTTTTCTCTCTGGTAGTT+TGG - chr4_1:3696657-3696676 None:intergenic 40.0%
AAACTACCAGAGAGAAAAGG+AGG + chr4_1:3696656-3696675 Msa0529890:intron 40.0%
!!! CTAGTTGCTTTTCCAACTGA+AGG - chr4_1:3696698-3696717 None:intergenic 40.0%
CTGCAAGTCATGAAACATCT+TGG + chr4_1:3696765-3696784 Msa0529890:CDS 40.0%
TCTTGGAGATCAAGATGATG+CGG + chr4_1:3696782-3696801 Msa0529890:CDS 40.0%
GGAAGAGATGAATTCAGAGT+TGG + chr4_1:3696821-3696840 Msa0529890:CDS 40.0%
CCTGTAGTTCATCATTGCTT+TGG - chr4_1:3696911-3696930 None:intergenic 40.0%
CCAAAGCAATGATGAACTAC+AGG + chr4_1:3696908-3696927 Msa0529890:CDS 40.0%
ATGATGAACTACAGGAAGCT+CGG + chr4_1:3696916-3696935 Msa0529890:CDS 40.0%
GATTATCTCCACCTCTCTTT+AGG + chr4_1:3697122-3697141 Msa0529890:intron 40.0%
GGGTTAAATGAAATGCTGAC+TGG + chr4_1:3697242-3697261 Msa0529890:CDS 40.0%
TAATATTGGCACCAAGAGGA+TGG + chr4_1:3697274-3697293 Msa0529890:CDS 40.0%
AATATTGGCACCAAGAGGAT+GGG + chr4_1:3697275-3697294 Msa0529890:CDS 40.0%
TCACAAAAACCTTCTGGTCA+AGG - chr4_1:3697304-3697323 None:intergenic 40.0%
AGGCATTCACAAAAACCTTC+TGG - chr4_1:3697310-3697329 None:intergenic 40.0%
TTCTGATGAAGCTGGGATAA+AGG + chr4_1:3697346-3697365 Msa0529890:CDS 40.0%
GCTTTATGGTACATACCACA+TGG - chr4_1:3697454-3697473 None:intergenic 40.0%
! AAACACAGAGCATGGCTTTA+TGG - chr4_1:3697468-3697487 None:intergenic 40.0%
TACGCAAAAAACACAGAGCA+TGG - chr4_1:3697476-3697495 None:intergenic 40.0%
CAAAAGCTGAAGAAGGAATG+GGG + chr4_1:3697588-3697607 Msa0529890:CDS 40.0%
ATGTGCATATGACTGCAACT+GGG - chr4_1:3697903-3697922 None:intergenic 40.0%
ATTGAGTTATGGGTGTGACT+TGG + chr4_1:3698117-3698136 Msa0529890:intron 40.0%
TTGAGTTATGGGTGTGACTT+GGG + chr4_1:3698118-3698137 Msa0529890:intron 40.0%
CTGGTTGATTGCAATTGAAG+TGG + chr4_1:3698235-3698254 Msa0529890:intron 40.0%
GCTTTGCACCTCACATATAT+TGG + chr4_1:3698438-3698457 Msa0529890:intron 40.0%
AGTTTATCTTGAGGCTTTGC+AGG + chr4_1:3698726-3698745 Msa0529890:intron 40.0%
GTTTATCTTGAGGCTTTGCA+GGG + chr4_1:3698727-3698746 Msa0529890:intron 40.0%
TACATCATATCTCAATCGGG+AGG + chr4_1:3698756-3698775 Msa0529890:three_prime_UTR 40.0%
GTTATCACGGTTATCGCATA+CGG + chr4_1:3698980-3698999 Msa0529890:three_prime_UTR 40.0%
ATGGAAGCTCAGCTCAGAAA+AGG - chr4_1:3693941-3693960 None:intergenic 45.0%
CCAGCCCTTAACTCTTCATA+TGG - chr4_1:3694736-3694755 None:intergenic 45.0%
CCATATGAAGAGTTAAGGGC+TGG + chr4_1:3694733-3694752 Msa0529890:CDS 45.0%
ACTTAGGTGTCCGTATTGCT+CGG + chr4_1:3694786-3694805 Msa0529890:CDS 45.0%
TTGCTCGGGAAAGAAAAAGC+AGG + chr4_1:3694801-3694820 Msa0529890:CDS 45.0%
! ATCTGGAGTAGGCAAAGGTT+CGG + chr4_1:3694855-3694874 Msa0529890:CDS 45.0%
AGTTCTCAACTTGGACAGGT+TGG - chr4_1:3694996-3695015 None:intergenic 45.0%
ACGTAGTTCTCAACTTGGAC+AGG - chr4_1:3695000-3695019 None:intergenic 45.0%
GCCAAACGTAGTTCTCAACT+TGG - chr4_1:3695005-3695024 None:intergenic 45.0%
TTGACAAGTATGCCTGTCCA+CGG - chr4_1:3695027-3695046 None:intergenic 45.0%
GGCTGTTCATACGTTCTTGA+TGG + chr4_1:3695107-3695126 Msa0529890:CDS 45.0%
TTGGAATTCCATGGACTTGC+AGG + chr4_1:3695236-3695255 Msa0529890:CDS 45.0%
TAATTGTCCAGGGTCGATTG+GGG + chr4_1:3695302-3695321 Msa0529890:CDS 45.0%
AGTACCTTCGCAACAAAGGA+AGG + chr4_1:3695325-3695344 Msa0529890:CDS 45.0%
TATGTCCTTGAGTAGGATGC+TGG + chr4_1:3695479-3695498 Msa0529890:CDS 45.0%
! TGAGGAGGTACGAAGGATAT+TGG + chr4_1:3695672-3695691 Msa0529890:CDS 45.0%
AGGTACTAACCGATCAAGAG+AGG + chr4_1:3695776-3695795 Msa0529890:CDS 45.0%
CAGTTTCTGCCTCTCTTGAT+CGG - chr4_1:3695788-3695807 None:intergenic 45.0%
ACTGGAAGAGGACAAGAAGA+AGG + chr4_1:3695804-3695823 Msa0529890:CDS 45.0%
!! AGACTCTGGGACAAATTAGC+GGG - chr4_1:3696125-3696144 None:intergenic 45.0%
! GGGATATCAGAAAGCACATC+TGG - chr4_1:3696334-3696353 None:intergenic 45.0%
AAGGCTCCTCAAGCATGTAA+AGG - chr4_1:3696366-3696385 None:intergenic 45.0%
ATTCCTGGAGTCTTTCTGGA+AGG - chr4_1:3696450-3696469 None:intergenic 45.0%
! CAACTGGAGTGATTGATTCC+TGG - chr4_1:3696465-3696484 None:intergenic 45.0%
CAGGAATCAATCACTCCAGT+TGG + chr4_1:3696463-3696482 Msa0529890:CDS 45.0%
AGCTATCTTCTGCTCCTTTG+AGG - chr4_1:3696489-3696508 None:intergenic 45.0%
!! CAGGCTTGTTGAAGAGCAAA+AGG + chr4_1:3696523-3696542 Msa0529890:CDS 45.0%
AAAGGTTTGCCCTACTCACT+TGG + chr4_1:3696541-3696560 Msa0529890:CDS 45.0%
GGTGGAGATAATCTTCATGC+AGG - chr4_1:3697115-3697134 None:intergenic 45.0%
CTGTCGAGCTTTGCTCTTTA+TGG + chr4_1:3697369-3697388 Msa0529890:CDS 45.0%
!! AGCTTGGCACCCTTTTAAAG+TGG + chr4_1:3697412-3697431 Msa0529890:CDS 45.0%
AAACAGTATACCCACCACTG+GGG - chr4_1:3697668-3697687 None:intergenic 45.0%
CAAACAGTATACCCACCACT+GGG - chr4_1:3697669-3697688 None:intergenic 45.0%
!! CAGTGGTGGGTATACTGTTT+GGG + chr4_1:3697668-3697687 Msa0529890:CDS 45.0%
AAGCAACTTAAGCGCAAGAG+AGG + chr4_1:3697762-3697781 Msa0529890:CDS 45.0%
AAGAGAGGAGGATAGGCAAA+AGG + chr4_1:3697777-3697796 Msa0529890:exon 45.0%
CATGTGCATATGACTGCAAC+TGG - chr4_1:3697904-3697923 None:intergenic 45.0%
!! CAGGAGCACCAATATATGTG+AGG - chr4_1:3698449-3698468 None:intergenic 45.0%
GACAGACAGGAGCAATTGAA+AGG - chr4_1:3698521-3698540 None:intergenic 45.0%
TCAATTGCTCCTGTCTGTCA+TGG + chr4_1:3698522-3698541 Msa0529890:intron 45.0%
ATCATATCTCAATCGGGAGG+TGG + chr4_1:3698759-3698778 Msa0529890:three_prime_UTR 45.0%
TGAATGCACGAAACCCTAGG+AGG - chr4_1:3693894-3693913 None:intergenic 50.0%
! GATCAGTGAGTCTGAGATCG+AGG + chr4_1:3694696-3694715 Msa0529890:CDS 50.0%
CTTAGGTGTCCGTATTGCTC+GGG + chr4_1:3694787-3694806 Msa0529890:CDS 50.0%
GATCTGTTGCAGCATGCATC+TGG + chr4_1:3694838-3694857 Msa0529890:CDS 50.0%
! TTGCAGCATGCATCTGGAGT+AGG + chr4_1:3694844-3694863 Msa0529890:CDS 50.0%
! CATGCATCTGGAGTAGGCAA+AGG + chr4_1:3694850-3694869 Msa0529890:CDS 50.0%
ACGACAGCTAAGGTCAAAGC+CGG - chr4_1:3694973-3694992 None:intergenic 50.0%
TTGAGAACTACGTTTGGCCG+TGG + chr4_1:3695007-3695026 Msa0529890:CDS 50.0%
! CTTGATGGATGGTAACTGCG+TGG + chr4_1:3695122-3695141 Msa0529890:CDS 50.0%
TGAACTGTCCTGCAAGTCCA+TGG - chr4_1:3695247-3695266 None:intergenic 50.0%
TCAGCCTTCCTTTGTTGCGA+AGG - chr4_1:3695332-3695351 None:intergenic 50.0%
TTCGCAACAAAGGAAGGCTG+AGG + chr4_1:3695331-3695350 Msa0529890:CDS 50.0%
CTTGTTTAGGTCTCTGCTCC+AGG - chr4_1:3695752-3695771 None:intergenic 50.0%
CAGAGACCTAAACAAGCGTG+AGG + chr4_1:3695756-3695775 Msa0529890:CDS 50.0%
CGATCAAGAGAGGCAGAAAC+TGG + chr4_1:3695786-3695805 Msa0529890:CDS 50.0%
AGAGAGGCAGAAACTGGAAG+AGG + chr4_1:3695792-3695811 Msa0529890:CDS 50.0%
!! ACAAATTAGCGGGCTGTGGA+AGG - chr4_1:3696115-3696134 None:intergenic 50.0%
TGTCCTTCCAGAAAGACTCC+AGG + chr4_1:3696444-3696463 Msa0529890:intron 50.0%
! ATCACTCCAGTTGGCCTCAA+AGG + chr4_1:3696472-3696491 Msa0529890:CDS 50.0%
CTACCAGAGAGAAAAGGAGG+AGG + chr4_1:3696659-3696678 Msa0529890:intron 50.0%
CGAGCTTTGCTCTTTATGGC+AGG + chr4_1:3697373-3697392 Msa0529890:CDS 50.0%
GTTAACGAGTACAACCCCAG+TGG + chr4_1:3697651-3697670 Msa0529890:CDS 50.0%
CCAAACAGTATACCCACCAC+TGG - chr4_1:3697670-3697689 None:intergenic 50.0%
!! CCAGTGGTGGGTATACTGTT+TGG + chr4_1:3697667-3697686 Msa0529890:CDS 50.0%
GGTATACTGTTTGGGAGCTG+TGG + chr4_1:3697676-3697695 Msa0529890:CDS 50.0%
CAACTTAAGCGCAAGAGAGG+AGG + chr4_1:3697765-3697784 Msa0529890:CDS 50.0%
TAAGCGCAAGAGAGGAGGAT+AGG + chr4_1:3697770-3697789 Msa0529890:CDS 50.0%
CGACAGCTAAGGTCAAAGCC+GGG - chr4_1:3694972-3694991 None:intergenic 55.0%
! GACAGGTTGGACGACAGCTA+AGG - chr4_1:3694983-3695002 None:intergenic 55.0%
AACTACGTTTGGCCGTGGAC+AGG + chr4_1:3695012-3695031 Msa0529890:CDS 55.0%
!! GGGGAGTACCTTCGCAACAA+AGG + chr4_1:3695321-3695340 Msa0529890:CDS 55.0%
GTCCTTGAGTAGGATGCTGG+AGG + chr4_1:3695482-3695501 Msa0529890:CDS 55.0%
CTCCTCCAGCATCCTACTCA+AGG - chr4_1:3695487-3695506 None:intergenic 55.0%
CATGCAGCGTAAAGCTCGTG+AGG + chr4_1:3695654-3695673 Msa0529890:CDS 55.0%
! AAGCTCGTGAGGAGGTACGA+AGG + chr4_1:3695665-3695684 Msa0529890:CDS 55.0%
!! TGGGACAAATTAGCGGGCTG+TGG - chr4_1:3696119-3696138 None:intergenic 55.0%
!! TCTGCTCCTTTGAGGCCAAC+TGG - chr4_1:3696481-3696500 None:intergenic 55.0%
! AGGCCTCCTCCTTTTCTCTC+TGG - chr4_1:3696665-3696684 None:intergenic 55.0%
GTCAAGGTCTCCCATCCTCT+TGG - chr4_1:3697288-3697307 None:intergenic 55.0%
GATGGGAGACCTTGACCAGA+AGG + chr4_1:3697292-3697311 Msa0529890:CDS 55.0%
AACGAGTACAACCCCAGTGG+TGG + chr4_1:3697654-3697673 Msa0529890:CDS 55.0%
ACGAGTACAACCCCAGTGGT+GGG + chr4_1:3697655-3697674 Msa0529890:CDS 55.0%
AGCAGACCAAGTACCTCGCC+CGG + chr4_1:3694951-3694970 Msa0529890:CDS 60.0%
! TCAAAGCCGGGCGAGGTACT+TGG - chr4_1:3694960-3694979 None:intergenic 60.0%
AGGTACTCCCCAATCGACCC+TGG - chr4_1:3695312-3695331 None:intergenic 60.0%
GCAGCGTAAAGCTCGTGAGG+AGG + chr4_1:3695657-3695676 Msa0529890:CDS 60.0%
GCTAAGGTCAAAGCCGGGCG+AGG - chr4_1:3694967-3694986 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 3693873 3699057 3693873 ID=Msa0529890;Name=Msa0529890
chr4_1 mRNA 3693873 3699057 3693873 ID=Msa0529890-mRNA-1;Parent=Msa0529890;Name=Msa0529890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=115|0.85|0.87|1|0.71|0.62|8|317|641
chr4_1 exon 3693873 3693982 3693873 ID=Msa0529890-mRNA-1:exon:1093;Parent=Msa0529890-mRNA-1
chr4_1 exon 3694662 3695537 3694662 ID=Msa0529890-mRNA-1:exon:1094;Parent=Msa0529890-mRNA-1
chr4_1 exon 3695644 3695825 3695644 ID=Msa0529890-mRNA-1:exon:1095;Parent=Msa0529890-mRNA-1
chr4_1 exon 3696455 3696589 3696455 ID=Msa0529890-mRNA-1:exon:1096;Parent=Msa0529890-mRNA-1
chr4_1 exon 3696666 3696953 3696666 ID=Msa0529890-mRNA-1:exon:1097;Parent=Msa0529890-mRNA-1
chr4_1 exon 3697242 3697457 3697242 ID=Msa0529890-mRNA-1:exon:1098;Parent=Msa0529890-mRNA-1
chr4_1 exon 3697558 3697798 3697558 ID=Msa0529890-mRNA-1:exon:1099;Parent=Msa0529890-mRNA-1
chr4_1 exon 3698748 3699057 3698748 ID=Msa0529890-mRNA-1:exon:1100;Parent=Msa0529890-mRNA-1
chr4_1 five_prime_UTR 3693873 3693982 3693873 ID=Msa0529890-mRNA-1:five_prime_utr;Parent=Msa0529890-mRNA-1
chr4_1 five_prime_UTR 3694662 3694666 3694662 ID=Msa0529890-mRNA-1:five_prime_utr;Parent=Msa0529890-mRNA-1
chr4_1 CDS 3694667 3695537 3694667 ID=Msa0529890-mRNA-1:cds;Parent=Msa0529890-mRNA-1
chr4_1 CDS 3695644 3695825 3695644 ID=Msa0529890-mRNA-1:cds;Parent=Msa0529890-mRNA-1
chr4_1 CDS 3696455 3696589 3696455 ID=Msa0529890-mRNA-1:cds;Parent=Msa0529890-mRNA-1
chr4_1 CDS 3696666 3696953 3696666 ID=Msa0529890-mRNA-1:cds;Parent=Msa0529890-mRNA-1
chr4_1 CDS 3697242 3697457 3697242 ID=Msa0529890-mRNA-1:cds;Parent=Msa0529890-mRNA-1
chr4_1 CDS 3697558 3697791 3697558 ID=Msa0529890-mRNA-1:cds;Parent=Msa0529890-mRNA-1
chr4_1 three_prime_UTR 3697792 3697798 3697792 ID=Msa0529890-mRNA-1:three_prime_utr;Parent=Msa0529890-mRNA-1
chr4_1 three_prime_UTR 3698748 3699057 3698748 ID=Msa0529890-mRNA-1:three_prime_utr;Parent=Msa0529890-mRNA-1
Gene Sequence

>Msa0529890

ATGGACTACAGCTCTGAAGAAGAGTCAGAGATCAGTGAGTCTGAGATCGAGGAATACTCTGAGAAACCATATGAAGAGTTAAGGGCTGGTAAATACAAAGTGAAGAACAATAATGGGACACTTAGGTGTCCGTATTGCTCGGGAAAGAAAAAGCAGGAATTCAAATATAAGGATCTGTTGCAGCATGCATCTGGAGTAGGCAAAGGTTCGGCAAACAGAAGCACAAAACAGAAGGCAAACCATCTGGCTCTTGCAAAGTTTTTGAGGACTGACTTAGCAAATGAAGCAGACCAAGTACCTCGCCCGGCTTTGACCTTAGCTGTCGTCCAACCTGTCCAAGTTGAGAACTACGTTTGGCCGTGGACAGGCATACTTGTCAATATAAGCAAATCACATGATTCTGGATACTTGCAAAAGGAATTTGCTAAGTACAAACCATTGGCTGTTCATACGTTCTTGATGGATGGTAACTGCGTGGCTGTTATAGACTTCAACAATGACTGGAATGGGTTTATGAATGCAAGTGAGCTTGAGAAATGGTTTGAGACTAAACGTTGTGGAAAAAAGGATTGGAATTCCATGGACTTGCAGGACAGTTCAGAGATTTACGGTTGGGTTGCACGTGAAGATGATTATAATTGTCCAGGGTCGATTGGGGAGTACCTTCGCAACAAAGGAAGGCTGAGGACAATTTCAGATATAGTTCAAGAAGCATCTCAAAGCAGAAATAGCATTGTGGAAAACCTGGCAAATGAGATTGATATTACTAATGAAAATCTCAACAAGATGCAGTATAGGTATAATGAGAAGACTATGTCCTTGAGTAGGATGCTGGAGGAGAAAGACAAACTTCACAATGCTTTTGTTGAAGAGTCAAGGAGCATGCAGCGTAAAGCTCGTGAGGAGGTACGAAGGATATTGGAAGAACAAGAAAAGTTGAGTAATGAATTGGATGAAAAAATGAGGAAGCTTGATACCTGGAGCAGAGACCTAAACAAGCGTGAGGTACTAACCGATCAAGAGAGGCAGAAACTGGAAGAGGACAAGAAGAAGAAAGACTCCAGGAATCAATCACTCCAGTTGGCCTCAAAGGAGCAGAAGATAGCTGATGAGAATGTCTTCAGGCTTGTTGAAGAGCAAAAGGTTTGCCCTACTCACTTGGTTATGAAAAGACAATACTACAGTAGTAGAGAAAAGGAGGAGGCCTTAAACAAGATCCTTCAGTTGGAAAAGCAACTAGATGCCAAACAAAAATTGGAAATGGAAATTGAAGAACTAAAAGGGAAACTGCAAGTCATGAAACATCTTGGAGATCAAGATGATGCGGCTATTAAGAAAAAAATGGAAGAGATGAATTCAGAGTTGGAAGACAAAATAGAAAGTTTGGAAGATATGGAGTCTATGAATTTAACGCTTATTGTCAAGGAGCGCCAAAGCAATGATGAACTACAGGAAGCTCGGAAAGAATTAATAGAAGGGTTAAATGAAATGCTGACTGGTGCCAAAACTAATATTGGCACCAAGAGGATGGGAGACCTTGACCAGAAGGTTTTTGTGAATGCCTGCAAGAAAAGATTTTCTTCTGATGAAGCTGGGATAAAGGCTGTCGAGCTTTGCTCTTTATGGCAGGAAAATGTGAAGAACTCAGCTTGGCACCCTTTTAAAGTGGTTACAGAGAATGATAACCATGTGTCAGTTATAGATGAGAAAGATGAGAAACTACAAAAGCTGAAGAAGGAATGGGGAGACGAGATATATTCAGCTGTTGTAACAGCCTTAAAAGAAGTTAACGAGTACAACCCCAGTGGTGGGTATACTGTTTGGGAGCTGTGGAACTTCAAAGAAAATAGGAAGGCAACACTGAAAGAAGTGATCACTTATATTGTGGATCACATGAAGCAACTTAAGCGCAAGAGAGGAGGATAG
Protein sequence

>Msa0529890

MDYSSEEESEISESEIEEYSEKPYEELRAGKYKVKNNNGTLRCPYCSGKKKQEFKYKDLLQHASGVGKGSANRSTKQKANHLALAKFLRTDLANEADQVPRPALTLAVVQPVQVENYVWPWTGILVNISKSHDSGYLQKEFAKYKPLAVHTFLMDGNCVAVIDFNNDWNGFMNASELEKWFETKRCGKKDWNSMDLQDSSEIYGWVAREDDYNCPGSIGEYLRNKGRLRTISDIVQEASQSRNSIVENLANEIDITNENLNKMQYRYNEKTMSLSRMLEEKDKLHNAFVEESRSMQRKAREEVRRILEEQEKLSNELDEKMRKLDTWSRDLNKREVLTDQERQKLEEDKKKKDSRNQSLQLASKEQKIADENVFRLVEEQKVCPTHLVMKRQYYSSREKEEALNKILQLEKQLDAKQKLEMEIEELKGKLQVMKHLGDQDDAAIKKKMEEMNSELEDKIESLEDMESMNLTLIVKERQSNDELQEARKELIEGLNEMLTGAKTNIGTKRMGDLDQKVFVNACKKRFSSDEAGIKAVELCSLWQENVKNSAWHPFKVVTENDNHVSVIDEKDEKLQKLKKEWGDEIYSAVVTALKEVNEYNPSGGYTVWELWNFKENRKATLKEVITYIVDHMKQLKRKRGG*