AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625720 MtrunA17_Chr4g0001231 95.320 641 15 1 1 641 1 626 0.0 1233
Msa0625720 MtrunA17_Chr4g0070931 85.559 644 74 5 1 640 1 629 0.0 1049
Msa0625720 MtrunA17_Chr4g0074301 84.783 644 79 5 1 640 1 629 0.0 1035
Msa0625720 MtrunA17_Chr4g0074271 78.534 382 64 3 1 381 18 382 0.0 542
Msa0625720 MtrunA17_Chr4g0074271 39.910 223 121 4 410 632 241 450 1.92e-30 124
Msa0625720 MtrunA17_Chr3g0111661 42.314 657 339 10 1 637 1 637 7.10e-168 494
Msa0625720 MtrunA17_Chr5g0435301 40.060 669 348 14 5 640 472 1120 1.15e-140 438
Msa0625720 MtrunA17_Chr5g0435301 44.231 104 54 4 1 102 1 102 3.82e-16 82.8
Msa0625720 MtrunA17_Chr5g0435301 43.023 86 43 3 19 103 131 211 4.53e-14 75.9
Msa0625720 MtrunA17_Chr5g0435301 41.860 86 45 2 19 103 247 328 7.14e-14 75.5
Msa0625720 MtrunA17_Chr5g0435301 40.426 94 52 3 5 94 353 446 6.52e-12 68.9
Msa0625720 MtrunA17_Chr2g0328251 35.994 689 353 17 13 629 10 682 4.76e-109 344
Msa0625720 MtrunA17_Chr2g0328241 34.337 664 344 14 31 629 30 666 1.38e-97 313
Msa0625720 MtrunA17_Chr4g0024031 32.357 683 340 17 33 639 32 668 2.37e-83 275
Msa0625720 MtrunA17_Chr4g0071151 44.444 261 114 4 397 639 4 251 1.97e-62 207
Msa0625720 MtrunA17_Chr3g0111741 50.685 219 104 4 423 640 123 338 8.87e-56 193
Msa0625720 MtrunA17_Chr2g0328231 46.025 239 110 5 406 629 120 354 1.77e-54 190
Msa0625720 MtrunA17_Chr3g0111731 42.920 226 115 4 416 640 2 214 3.84e-42 152
Msa0625720 MtrunA17_Chr2g0327251 29.150 247 158 3 115 345 79 324 2.95e-25 110
Msa0625720 MtrunA17_Chr3g0111691 53.846 78 35 1 563 640 14 90 2.31e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625720 AT1G15910.1 55.205 634 255 6 18 639 17 633 0.0 661
Msa0625720 AT4G00380.1 53.555 633 266 5 19 639 18 634 0.0 641
Msa0625720 AT4G00380.3 53.555 633 266 5 19 639 18 634 0.0 641
Msa0625720 AT4G00380.2 50.476 630 262 6 19 639 18 606 0.0 594
Msa0625720 AT1G80790.1 52.756 635 268 10 19 640 19 634 0.0 586
Msa0625720 AT1G80790.2 52.756 635 268 10 19 640 19 634 0.0 586
Msa0625720 AT3G48670.2 40.465 645 344 12 16 640 21 645 6.98e-145 436
Msa0625720 AT3G48670.1 40.465 645 344 12 16 640 21 645 6.98e-145 436
Msa0625720 AT3G48670.3 40.465 645 344 12 16 640 21 645 6.98e-145 436
Msa0625720 AT1G80790.3 52.137 468 194 8 19 474 19 468 1.51e-143 426
Msa0625720 AT3G12550.5 35.385 650 370 12 16 636 5 633 6.84e-113 352
Msa0625720 AT3G12550.4 35.330 651 370 12 16 636 5 634 3.51e-112 350
Msa0625720 AT3G12550.2 35.330 651 370 12 16 636 5 634 3.51e-112 350
Msa0625720 AT3G12550.1 35.330 651 370 12 16 636 5 634 3.51e-112 350
Msa0625720 AT1G13790.2 37.658 555 302 8 93 630 197 724 5.35e-105 335
Msa0625720 AT1G13790.2 38.272 81 50 0 12 92 3 83 2.42e-12 70.5
Msa0625720 AT1G13790.1 37.658 555 302 8 93 630 197 724 5.35e-105 335
Msa0625720 AT1G13790.1 38.272 81 50 0 12 92 3 83 2.42e-12 70.5
Msa0625720 AT3G12550.3 32.982 570 333 11 16 557 5 553 5.79e-85 278
Msa0625720 AT5G59390.1 33.633 556 311 17 113 639 30 556 1.37e-76 255
Msa0625720 AT5G59390.5 33.633 556 311 17 113 639 30 556 1.37e-76 255
Msa0625720 AT5G59390.2 33.453 556 307 17 113 639 30 551 1.66e-75 252
Msa0625720 AT5G59390.4 33.453 556 307 17 113 639 30 551 1.66e-75 252
Msa0625720 AT5G59390.3 33.453 556 307 17 113 639 30 551 1.66e-75 252
Msa0625720 AT4G01180.1 33.029 548 299 16 113 629 28 538 6.97e-70 237
Msa0625720 AT4G01780.1 32.347 473 205 8 170 640 111 470 1.14e-62 215
Msa0625720 AT3G29375.3 44.776 201 105 2 439 639 32 226 3.63e-46 163
Msa0625720 AT3G29375.1 44.776 201 105 2 439 639 155 349 1.33e-44 163
Msa0625720 AT3G29375.2 41.406 128 68 3 439 566 32 152 1.30e-18 84.3
Msa0625720 AT2G16490.1 43.243 74 42 0 566 639 75 148 8.35e-15 73.6

Find 160 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTGTAACCACTTTAAA+AGG 0.096361 4_3:-4947318 None:intergenic
CAACTGAAGGATCTTGTTTA+AGG 0.147603 4_3:-4946578 None:intergenic
CTGTCGAGCTTTGCTCTTTA+TGG 0.200712 4_3:+4947265 Msa0625720:CDS
CTTGGTGCCAATATTAGTTT+TGG 0.243764 4_3:-4947163 None:intergenic
ATGGAAATTGAAGAACTAAA+AGG 0.270508 4_3:+4946634 Msa0625720:CDS
GGAAGACAAAATAGAAAGTT+TGG 0.287888 4_3:+4946738 Msa0625720:CDS
ATAAGCAAATCACATGATTC+TGG 0.315654 4_3:+4944944 Msa0625720:CDS
TACAAAGTGAAGAACAATAA+TGG 0.316359 4_3:+4944656 Msa0625720:CDS
TTGGAATTCCATGGACTTGC+AGG 0.324273 4_3:+4945132 Msa0625720:CDS
AATAGAAAGTTTGGAAGATA+TGG 0.336318 4_3:+4946747 Msa0625720:CDS
TTCTGATGAAGCTGGGATAA+AGG 0.336391 4_3:+4947242 Msa0625720:CDS
AAAGCAGGAATTCAAATATA+AGG 0.338005 4_3:+4944712 Msa0625720:CDS
TGTGGAACTTCAAAGAAAAT+AGG 0.338398 4_3:+4947590 Msa0625720:CDS
ACTGGTGCCAAAACTAATAT+TGG 0.346735 4_3:+4947156 Msa0625720:CDS
AGAAAAGTTGAGTAATGAAT+TGG 0.351658 4_3:+4945599 Msa0625720:CDS
GAAATAATTAGTCAGAATAT+AGG 0.353567 4_3:-4948801 None:intergenic
GATGAAATTGCAGAGGAAAA+TGG 0.359851 4_3:-4943855 None:intergenic
CCTGTAGTTCATCATTGCTT+TGG 0.360050 4_3:-4946804 None:intergenic
CAGGACAGTTCAGAGATTTA+CGG 0.365740 4_3:+4945151 Msa0625720:CDS
TGAGGAGGTACGAAGGATAT+TGG 0.370766 4_3:+4945569 Msa0625720:CDS
CGATCAAGAGAGGCAGAAAC+TGG 0.373050 4_3:+4945683 Msa0625720:CDS
ATGAAGTATGAAACTGTTAC+TGG 0.375794 4_3:+4948854 Msa0625720:three_prime_UTR
CCAGCCCTTAACTCTTCATA+TGG 0.378071 4_3:-4944629 None:intergenic
AGAAACCATATGAAGAGTTA+AGG 0.381900 4_3:+4944624 Msa0625720:CDS
TCTGCTCCTTTGAGGCCAAC+TGG 0.386894 4_3:-4946374 None:intergenic
CCAGTGGTGGGTATACTGTT+TGG 0.391573 4_3:+4947563 Msa0625720:CDS
CAGTGGTGGGTATACTGTTT+GGG 0.392443 4_3:+4947564 Msa0625720:CDS
ACAAAGTGAAGAACAATAAT+GGG 0.394132 4_3:+4944657 Msa0625720:CDS
ATATAGCTGTCCAACGAAAA+TGG 0.395372 4_3:-4948687 None:intergenic
GATCTGTTGCAGCATGCATC+TGG 0.396114 4_3:+4944734 Msa0625720:CDS
TCAGAAAAGGAACGTGAAAA+TGG 0.399265 4_3:-4943823 None:intergenic
AGCTATCTTCTGCTCCTTTG+AGG 0.404036 4_3:-4946382 None:intergenic
GGCTGTTCATACGTTCTTGA+TGG 0.404762 4_3:+4945003 Msa0625720:CDS
TTAGTACCTCACGCTTGTTT+AGG 0.407923 4_3:-4945659 None:intergenic
ATAATTGTCCAGGGTCGATT+GGG 0.410920 4_3:+4945197 Msa0625720:CDS
GTCAAGGTCTCCCATCCTCT+TGG 0.419346 4_3:-4947181 None:intergenic
CAGGCTTGTTGAAGAGCAAA+AGG 0.422308 4_3:+4946419 Msa0625720:CDS
GAAGTACATCATATCTCAAT+CGG 0.422729 4_3:+4948648 Msa0625720:three_prime_UTR
CTTGTTTAGGTCTCTGCTCC+AGG 0.422956 4_3:-4945646 None:intergenic
TATTAAAACTCACTCCTCCT+AGG 0.429950 4_3:+4943775 Msa0625720:five_prime_UTR
TGGAAATTGAAGAACTAAAA+GGG 0.432185 4_3:+4946635 Msa0625720:CDS
CAGTTCAGAGATTTACGGTT+GGG 0.434103 4_3:+4945156 Msa0625720:CDS
TATAATTGTCCAGGGTCGAT+TGG 0.446459 4_3:+4945196 Msa0625720:CDS
ACTTCAACAATGACTGGAAT+GGG 0.453119 4_3:+4945050 Msa0625720:CDS
CTGCAAGTCATGAAACATCT+TGG 0.454930 4_3:+4946661 Msa0625720:CDS
GAAACCATATGAAGAGTTAA+GGG 0.456039 4_3:+4944625 Msa0625720:CDS
CAGTTTCTGCCTCTCTTGAT+CGG 0.457451 4_3:-4945682 None:intergenic
GAAGATGATTATAATTGTCC+AGG 0.464276 4_3:+4945187 Msa0625720:CDS
TCAAAGCCGGGCGAGGTACT+TGG 0.465289 4_3:-4944853 None:intergenic
TAGCTGATGAGAATGTCTTC+AGG 0.469727 4_3:+4946400 Msa0625720:CDS
CAACTGGAGTGATTGATTCC+TGG 0.474236 4_3:-4946358 None:intergenic
GGTATACTGTTTGGGAGCTG+TGG 0.476632 4_3:+4947572 Msa0625720:CDS
TACAAAAGCTGAAGAAGGAA+TGG 0.478989 4_3:+4947482 Msa0625720:CDS
TAATATCAATCTCATTTGCC+AGG 0.479312 4_3:-4945306 None:intergenic
GGAAGAGATGAATTCAGAGT+TGG 0.479922 4_3:+4946717 Msa0625720:CDS
ATCACTCCAGTTGGCCTCAA+AGG 0.480055 4_3:+4946368 Msa0625720:CDS
AAAACAGAAGGCAAACCATC+TGG 0.480375 4_3:+4944787 Msa0625720:CDS
CGAGCTTTGCTCTTTATGGC+AGG 0.485391 4_3:+4947269 Msa0625720:CDS
TCCAAGTTGAGAACTACGTT+TGG 0.494414 4_3:+4944897 Msa0625720:CDS
TTATAGACTTCAACAATGAC+TGG 0.495035 4_3:+4945044 Msa0625720:CDS
AAAGGTTTGCCCTACTCACT+TGG 0.496814 4_3:+4946437 Msa0625720:CDS
ACAAAAGCTGAAGAAGGAAT+GGG 0.498002 4_3:+4947483 Msa0625720:CDS
ATCTCAACAAGATGCAGTAT+AGG 0.500867 4_3:+4945338 Msa0625720:CDS
ATGGAAGCTCAGCTCAGAAA+AGG 0.500964 4_3:-4943836 None:intergenic
ATTAAAACTCACTCCTCCTA+GGG 0.504234 4_3:+4943776 Msa0625720:five_prime_UTR
TCTCTGTAACCACTTTAAAA+GGG 0.509171 4_3:-4947317 None:intergenic
ACTTAGGTGTCCGTATTGCT+CGG 0.510947 4_3:+4944682 Msa0625720:CDS
AACTACGTTTGGCCGTGGAC+AGG 0.513586 4_3:+4944908 Msa0625720:CDS
GAATTTAACGCTTATTGTCA+AGG 0.513944 4_3:+4946777 Msa0625720:CDS
CTAATTTAAGTCTGAACTGA+AGG 0.521326 4_3:-4948751 None:intergenic
TTCAGTAGAAAGATAGAAGT+AGG 0.523707 4_3:+4948716 Msa0625720:three_prime_UTR
TAATATTGGCACCAAGAGGA+TGG 0.524177 4_3:+4947170 Msa0625720:CDS
TATGTCCTTGAGTAGGATGC+TGG 0.524242 4_3:+4945375 Msa0625720:CDS
CCAAACAGTATACCCACCAC+TGG 0.525403 4_3:-4947563 None:intergenic
CCAAAGCAATGATGAACTAC+AGG 0.526461 4_3:+4946804 Msa0625720:CDS
CTTAAACAAGATCCTTCAGT+TGG 0.526740 4_3:+4946579 Msa0625720:CDS
ACGTAGTTCTCAACTTGGAC+AGG 0.526836 4_3:-4944893 None:intergenic
GCCAAACGTAGTTCTCAACT+TGG 0.528155 4_3:-4944898 None:intergenic
TGAACTGTCCTGCAAGTCCA+TGG 0.528763 4_3:-4945140 None:intergenic
AAGAGAGGAGGATAGGCAAA+AGG 0.532512 4_3:+4947673 Msa0625720:exon
AAATAGCATTGTGGAAAACC+TGG 0.534545 4_3:+4945288 Msa0625720:CDS
GACTTCAACAATGACTGGAA+TGG 0.535886 4_3:+4945049 Msa0625720:CDS
TCAGCCTTCCTTTGTTGCGA+AGG 0.537542 4_3:-4945225 None:intergenic
CTTAGGTGTCCGTATTGCTC+GGG 0.537566 4_3:+4944683 Msa0625720:CDS
ATCTGGAGTAGGCAAAGGTT+CGG 0.537904 4_3:+4944751 Msa0625720:CDS
ATCATATCTCAATCGGGAGG+TGG 0.539320 4_3:+4948655 Msa0625720:three_prime_UTR
GATGGGAGACCTTGACCAGA+AGG 0.539667 4_3:+4947188 Msa0625720:CDS
GTTCATACGTTCTTGATGGA+TGG 0.543612 4_3:+4945007 Msa0625720:CDS
TTCATTATAAACAAGTCAAG+TGG 0.544874 4_3:-4948836 None:intergenic
AAATGAGGAAGCTTGATACC+TGG 0.545605 4_3:+4945628 Msa0625720:CDS
TCCAAACTACCAGAGAGAAA+AGG 0.547284 4_3:+4946549 Msa0625720:intron
TTGAGAACTACGTTTGGCCG+TGG 0.547439 4_3:+4944903 Msa0625720:CDS
GAAACTACAAAAGCTGAAGA+AGG 0.547462 4_3:+4947477 Msa0625720:CDS
CCATATGAAGAGTTAAGGGC+TGG 0.547915 4_3:+4944629 Msa0625720:CDS
AAACAGAAGCACAAAACAGA+AGG 0.549041 4_3:+4944775 Msa0625720:CDS
TGTCCTTCCAGAAAGACTCC+AGG 0.550329 4_3:+4946340 Msa0625720:intron
ATGCAAGTGAGCTTGAGAAA+TGG 0.551886 4_3:+4945080 Msa0625720:CDS
ACGACAGCTAAGGTCAAAGC+CGG 0.553034 4_3:-4944866 None:intergenic
ATTTGCTAAGTACAAACCAT+TGG 0.554128 4_3:+4944982 Msa0625720:CDS
AGCAGACCAAGTACCTCGCC+CGG 0.554305 4_3:+4944847 Msa0625720:CDS
ACTGGAAGAGGACAAGAAGA+AGG 0.555312 4_3:+4945701 Msa0625720:CDS
TGATTCTGGATACTTGCAAA+AGG 0.555382 4_3:+4944958 Msa0625720:CDS
AGTTCTCAACTTGGACAGGT+TGG 0.556864 4_3:-4944889 None:intergenic
GAAACTGTTACTGGTTATCA+CGG 0.561539 4_3:+4948863 Msa0625720:three_prime_UTR
GCTAAGGTCAAAGCCGGGCG+AGG 0.561717 4_3:-4944860 None:intergenic
AGAAGTGATCACTTATATTG+TGG 0.563683 4_3:+4947627 Msa0625720:CDS
TTGCAGCATGCATCTGGAGT+AGG 0.566883 4_3:+4944740 Msa0625720:CDS
TAAGCGCAAGAGAGGAGGAT+AGG 0.567186 4_3:+4947666 Msa0625720:CDS
CAGGAATCAATCACTCCAGT+TGG 0.571555 4_3:+4946359 Msa0625720:CDS
ATGATGAACTACAGGAAGCT+CGG 0.574508 4_3:+4946812 Msa0625720:CDS
AGAACAATAATGGGACACTT+AGG 0.574673 4_3:+4944666 Msa0625720:CDS
AAGTACATCATATCTCAATC+GGG 0.577063 4_3:+4948649 Msa0625720:three_prime_UTR
AATTGAATGCACGAAACCCT+AGG 0.578610 4_3:-4943792 None:intergenic
AGGTACTCCCCAATCGACCC+TGG 0.579229 4_3:-4945205 None:intergenic
AAAACTTTGCAAGAGCCAGA+TGG 0.582131 4_3:-4944802 None:intergenic
AACGAGTACAACCCCAGTGG+TGG 0.585705 4_3:+4947550 Msa0625720:CDS
AATATTGGCACCAAGAGGAT+GGG 0.586149 4_3:+4947171 Msa0625720:CDS
GACAGGTTGGACGACAGCTA+AGG 0.586592 4_3:-4944876 None:intergenic
AGTACCTTCGCAACAAAGGA+AGG 0.587192 4_3:+4945221 Msa0625720:CDS
AGAGAGGCAGAAACTGGAAG+AGG 0.587763 4_3:+4945689 Msa0625720:CDS
AAAATGTGAAGAACTCAGCT+TGG 0.590276 4_3:+4947292 Msa0625720:CDS
CAAACAGTATACCCACCACT+GGG 0.590617 4_3:-4947562 None:intergenic
GGGGAGTACCTTCGCAACAA+AGG 0.594476 4_3:+4945217 Msa0625720:CDS
CTCCTCCAGCATCCTACTCA+AGG 0.596087 4_3:-4945380 None:intergenic
CAACTTAAGCGCAAGAGAGG+AGG 0.597370 4_3:+4947661 Msa0625720:CDS
GATCAGTGAGTCTGAGATCG+AGG 0.600157 4_3:+4944592 Msa0625720:CDS
AAGCAACTTAAGCGCAAGAG+AGG 0.605662 4_3:+4947658 Msa0625720:CDS
CGACAGCTAAGGTCAAAGCC+GGG 0.609400 4_3:-4944865 None:intergenic
CATGCATCTGGAGTAGGCAA+AGG 0.611854 4_3:+4944746 Msa0625720:CDS
AGAAGACTATGTCCTTGAGT+AGG 0.612892 4_3:+4945368 Msa0625720:CDS
ACAGTTCAGAGATTTACGGT+TGG 0.615927 4_3:+4945155 Msa0625720:CDS
GTTATCACGGTTATCGCATA+CGG 0.618789 4_3:+4948876 Msa0625720:three_prime_UTR
GAACTTCAAAGAAAATAGGA+AGG 0.621964 4_3:+4947594 Msa0625720:CDS
AGGTACTAACCGATCAAGAG+AGG 0.623269 4_3:+4945673 Msa0625720:CDS
AAGATGATTATAATTGTCCA+GGG 0.627300 4_3:+4945188 Msa0625720:CDS
CATGCAGCGTAAAGCTCGTG+AGG 0.627326 4_3:+4945551 Msa0625720:CDS
TTGACAAGTATGCCTGTCCA+CGG 0.630837 4_3:-4944920 None:intergenic
AAACTACCAGAGAGAAAAGG+AGG 0.630982 4_3:+4946552 Msa0625720:intron
TAATTGTCCAGGGTCGATTG+GGG 0.634670 4_3:+4945198 Msa0625720:CDS
TGGTTTGAGACTAAACGTTG+TGG 0.637320 4_3:+4945100 Msa0625720:CDS
GTCCTTGAGTAGGATGCTGG+AGG 0.639598 4_3:+4945378 Msa0625720:CDS
GGGTTAAATGAAATGCTGAC+TGG 0.640070 4_3:+4947138 Msa0625720:CDS
TTCGCAACAAAGGAAGGCTG+AGG 0.640972 4_3:+4945227 Msa0625720:CDS
AAGCTCGTGAGGAGGTACGA+AGG 0.645630 4_3:+4945562 Msa0625720:CDS
AAGAACGTATGAACAGCCAA+TGG 0.648751 4_3:-4944998 None:intergenic
CTACCAGAGAGAAAAGGAGG+AGG 0.652051 4_3:+4946555 Msa0625720:intron
TCTTGGAGATCAAGATGATG+CGG 0.666276 4_3:+4946678 Msa0625720:CDS
ACGAGTACAACCCCAGTGGT+GGG 0.666856 4_3:+4947551 Msa0625720:CDS
CAAAAGCTGAAGAAGGAATG+GGG 0.672943 4_3:+4947484 Msa0625720:CDS
TCAAAGCAGAAATAGCATTG+TGG 0.673917 4_3:+4945279 Msa0625720:CDS
AAACTAATATTGGCACCAAG+AGG 0.676823 4_3:+4947166 Msa0625720:CDS
TACATCATATCTCAATCGGG+AGG 0.678077 4_3:+4948652 Msa0625720:three_prime_UTR
GCAGCGTAAAGCTCGTGAGG+AGG 0.682044 4_3:+4945554 Msa0625720:CDS
TTACAGCGATGAAATTGCAG+AGG 0.696307 4_3:-4943862 None:intergenic
CAGAGACCTAAACAAGCGTG+AGG 0.704526 4_3:+4945653 Msa0625720:CDS
CTTGATGGATGGTAACTGCG+TGG 0.712841 4_3:+4945018 Msa0625720:CDS
TGAATGCACGAAACCCTAGG+AGG 0.720425 4_3:-4943789 None:intergenic
TACAGAGAATGATAACCATG+TGG 0.726744 4_3:+4947332 Msa0625720:CDS
AAACAGTATACCCACCACTG+GGG 0.786062 4_3:-4947561 None:intergenic
GTTAACGAGTACAACCCCAG+TGG 0.812173 4_3:+4947547 Msa0625720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAATATATTAATTT+AGG + chr4_3:4947859-4947878 Msa0625720:intron 0.0%
!! AAATATCAATGTAATATATA+TGG + chr4_3:4946072-4946091 Msa0625720:intron 10.0%
!!! GTGATATTAAATTTCATTTT+AGG + chr4_3:4944282-4944301 Msa0625720:intron 15.0%
!!! CAGTTAAAAATATTTGAAAT+GGG - chr4_3:4945761-4945780 None:intergenic 15.0%
!!! AGTAACATTTCTTTTTATAT+AGG - chr4_3:4946890-4946909 None:intergenic 15.0%
!!! TTTCAAATTTCTATTGTTTT+AGG + chr4_3:4947116-4947135 Msa0625720:intron 15.0%
!!! TTCAAATTTCTATTGTTTTA+GGG + chr4_3:4947117-4947136 Msa0625720:intron 15.0%
!! AAATAGTGTAATAATTAACA+TGG + chr4_3:4947409-4947428 Msa0625720:intron 15.0%
!!! GTTTATTTATTTTATTCCAA+TGG + chr4_3:4948904-4948923 Msa0625720:three_prime_UTR 15.0%
!! GAAGAATTCAAAGAAAAAAA+CGG - chr4_3:4943910-4943929 None:intergenic 20.0%
!! AACAAAAACAAATACTGTAT+TGG - chr4_3:4944006-4944025 None:intergenic 20.0%
!!! TAAGTTACATTTTAAAATGC+AGG + chr4_3:4944227-4944246 Msa0625720:intron 20.0%
!!! TTAAATTTCATTTTAGGTCA+TGG + chr4_3:4944288-4944307 Msa0625720:intron 20.0%
!!! AAAAAAATGAGACATTTTTG+TGG - chr4_3:4945516-4945535 None:intergenic 20.0%
!! GCAGTTAAAAATATTTGAAA+TGG - chr4_3:4945762-4945781 None:intergenic 20.0%
!!! CACTTTTTTATTCAAATCAA+GGG - chr4_3:4945938-4945957 None:intergenic 20.0%
!! AAATTTGAAAAAAATGAGAG+GGG - chr4_3:4947106-4947125 None:intergenic 20.0%
!! GAAATTTGAAAAAAATGAGA+GGG - chr4_3:4947107-4947126 None:intergenic 20.0%
!! AGAAATTTGAAAAAAATGAG+AGG - chr4_3:4947108-4947127 None:intergenic 20.0%
!!! TCAAATTTCTATTGTTTTAG+GGG + chr4_3:4947118-4947137 Msa0625720:intron 20.0%
!! AAAGTTTATAAATGAAAAGC+TGG + chr4_3:4948112-4948131 Msa0625720:intron 20.0%
!!! TAATTTTGAAAAGCAAAAGA+TGG + chr4_3:4948442-4948461 Msa0625720:intron 20.0%
!! AACAAAAGAGAAAAAAAAAC+TGG - chr4_3:4948500-4948519 None:intergenic 20.0%
!!! AAACTTGTTTAGAATTTAAC+AGG - chr4_3:4948607-4948626 None:intergenic 20.0%
!! GAAATAATTAGTCAGAATAT+AGG - chr4_3:4948804-4948823 None:intergenic 20.0%
! AGTTGCTTATAAGCTAATTT+AGG + chr4_3:4944048-4944067 Msa0625720:intron 25.0%
!!! TACATTTTAAAATGCAGGAA+TGG + chr4_3:4944232-4944251 Msa0625720:intron 25.0%
! TACAAAGTGAAGAACAATAA+TGG + chr4_3:4944656-4944675 Msa0625720:CDS 25.0%
! ACAAAGTGAAGAACAATAAT+GGG + chr4_3:4944657-4944676 Msa0625720:CDS 25.0%
! AAAGCAGGAATTCAAATATA+AGG + chr4_3:4944712-4944731 Msa0625720:CDS 25.0%
! AAGATGATTATAATTGTCCA+GGG + chr4_3:4945188-4945207 Msa0625720:CDS 25.0%
!! TTTGCCTTATTGTATAGAAT+AGG + chr4_3:4945462-4945481 Msa0625720:intron 25.0%
!! TTGCCTTATTGTATAGAATA+GGG + chr4_3:4945463-4945482 Msa0625720:intron 25.0%
! TTTCCCTATTCTATACAATA+AGG - chr4_3:4945469-4945488 None:intergenic 25.0%
! AGAAAAGTTGAGTAATGAAT+TGG + chr4_3:4945599-4945618 Msa0625720:CDS 25.0%
! ATGAATTGGATGAAAAAATG+AGG + chr4_3:4945613-4945632 Msa0625720:CDS 25.0%
!!! GCACTTTTTTATTCAAATCA+AGG - chr4_3:4945939-4945958 None:intergenic 25.0%
! AAATGAATCCCAACTTTAAT+TGG + chr4_3:4945986-4946005 Msa0625720:intron 25.0%
!!! AAAAGCTTTTGATTATTGTG+AGG + chr4_3:4946049-4946068 Msa0625720:intron 25.0%
! ATTTCAACTCTACATAAATG+AGG - chr4_3:4946112-4946131 None:intergenic 25.0%
!! TTCCATTTCCAATTTTTGTT+TGG - chr4_3:4946620-4946639 None:intergenic 25.0%
! ATGGAAATTGAAGAACTAAA+AGG + chr4_3:4946634-4946653 Msa0625720:CDS 25.0%
! TGGAAATTGAAGAACTAAAA+GGG + chr4_3:4946635-4946654 Msa0625720:CDS 25.0%
! AATAGAAAGTTTGGAAGATA+TGG + chr4_3:4946747-4946766 Msa0625720:CDS 25.0%
!! AAATCTTATTTCCTAAAGAG+AGG - chr4_3:4947032-4947051 None:intergenic 25.0%
!! ATTACACTATTTCTCTATTG+AGG - chr4_3:4947401-4947420 None:intergenic 25.0%
! ACATGGTAATATTGTTGTAT+TGG + chr4_3:4947426-4947445 Msa0625720:intron 25.0%
!! CACTGACTAAAATAGTAATT+TGG + chr4_3:4947758-4947777 Msa0625720:intron 25.0%
!!! CAAAATGCTCTTTTAAGATA+TGG - chr4_3:4947932-4947951 None:intergenic 25.0%
! TTTATGAACGATGAAATGAT+TGG + chr4_3:4947982-4948001 Msa0625720:intron 25.0%
! CAAGTTATTCACATTCTATT+TGG + chr4_3:4948038-4948057 Msa0625720:intron 25.0%
! TAAGTTAACTAATAGCTACT+AGG + chr4_3:4948080-4948099 Msa0625720:intron 25.0%
! AAGTGGTTGTTAGAATTAAT+TGG + chr4_3:4948148-4948167 Msa0625720:intron 25.0%
! ACATGAAAGATATGTTCATA+TGG + chr4_3:4948196-4948215 Msa0625720:intron 25.0%
! TTACTAAAAGCTTTACCAAA+AGG + chr4_3:4948251-4948270 Msa0625720:intron 25.0%
!! TAAACTTTTGTCATTCCTTT+TGG - chr4_3:4948269-4948288 None:intergenic 25.0%
!!! CTTTTGTTTCTTACTCATAA+TGG + chr4_3:4948512-4948531 Msa0625720:intron 25.0%
! ATGGAAAAGTTTCTGATATT+TGG + chr4_3:4948531-4948550 Msa0625720:intron 25.0%
! TTCTAAACAAGTTTATCTTG+AGG + chr4_3:4948613-4948632 Msa0625720:intron 25.0%
!!! CTTTTTTATCTTTTGTCGAT+TGG + chr4_3:4948774-4948793 Msa0625720:three_prime_UTR 25.0%
! TTCATTATAAACAAGTCAAG+TGG - chr4_3:4948839-4948858 None:intergenic 25.0%
!!! TTGTTGCTGAGTTTTTTCTT+CGG + chr4_3:4943949-4943968 Msa0625720:intron 30.0%
! GTCATGGTTTATGTGATTTT+GGG + chr4_3:4944304-4944323 Msa0625720:intron 30.0%
! TCATGGTTTATGTGATTTTG+GGG + chr4_3:4944305-4944324 Msa0625720:intron 30.0%
! CAAAAAAGCATAGCTAAGAA+TGG - chr4_3:4944372-4944391 None:intergenic 30.0%
!!! TTAGCTATGCTTTTTTGTGA+TGG + chr4_3:4944375-4944394 Msa0625720:intron 30.0%
!!! TAGCTATGCTTTTTTGTGAT+GGG + chr4_3:4944376-4944395 Msa0625720:intron 30.0%
! ATTGTATGCCCTTTTTCTTT+TGG + chr4_3:4944482-4944501 Msa0625720:intron 30.0%
! TTGTATGCCCTTTTTCTTTT+GGG + chr4_3:4944483-4944502 Msa0625720:intron 30.0%
AGAAACCATATGAAGAGTTA+AGG + chr4_3:4944624-4944643 Msa0625720:CDS 30.0%
GAAACCATATGAAGAGTTAA+GGG + chr4_3:4944625-4944644 Msa0625720:CDS 30.0%
ATAAGCAAATCACATGATTC+TGG + chr4_3:4944944-4944963 Msa0625720:CDS 30.0%
! ATTTGCTAAGTACAAACCAT+TGG + chr4_3:4944982-4945001 Msa0625720:CDS 30.0%
TTATAGACTTCAACAATGAC+TGG + chr4_3:4945044-4945063 Msa0625720:CDS 30.0%
AAAAAAGGATTGGAATTCCA+TGG + chr4_3:4945123-4945142 Msa0625720:CDS 30.0%
GAAGATGATTATAATTGTCC+AGG + chr4_3:4945187-4945206 Msa0625720:CDS 30.0%
TAATATCAATCTCATTTGCC+AGG - chr4_3:4945309-4945328 None:intergenic 30.0%
!!! TCATTTTTTTGTCAGAGTCA+AGG + chr4_3:4945526-4945545 Msa0625720:intron 30.0%
!!! CAAATTTTTTGCAAGGACAA+TGG - chr4_3:4945812-4945831 None:intergenic 30.0%
!!! GACAGATCAAATTTTTTGCA+AGG - chr4_3:4945819-4945838 None:intergenic 30.0%
GATTTGAATAACAATGTCCT+TGG + chr4_3:4945909-4945928 Msa0625720:intron 30.0%
TTCATTTAAAGAGAGTCAGT+AGG - chr4_3:4945973-4945992 None:intergenic 30.0%
! GCATTTTATATATTAGTGCG+TGG + chr4_3:4946161-4946180 Msa0625720:intron 30.0%
!!! AGCACATCTGGTTTTTTTTA+TGG - chr4_3:4946218-4946237 None:intergenic 30.0%
ACTGATGATTCAAAGTCTTA+AGG - chr4_3:4946281-4946300 None:intergenic 30.0%
! TTTTCATAACCAAGTGAGTA+GGG - chr4_3:4946449-4946468 None:intergenic 30.0%
ACTAGATGCCAAACAAAAAT+TGG + chr4_3:4946609-4946628 Msa0625720:CDS 30.0%
TGCCAAACAAAAATTGGAAA+TGG + chr4_3:4946615-4946634 Msa0625720:CDS 30.0%
TGCGGCTATTAAGAAAAAAA+TGG + chr4_3:4946696-4946715 Msa0625720:CDS 30.0%
GGAAGACAAAATAGAAAGTT+TGG + chr4_3:4946738-4946757 Msa0625720:CDS 30.0%
GAATTTAACGCTTATTGTCA+AGG + chr4_3:4946777-4946796 Msa0625720:CDS 30.0%
TGAAGAATACACGAAGATAA+AGG - chr4_3:4946935-4946954 None:intergenic 30.0%
TTCAAGATAACCAACTAACA+AGG + chr4_3:4946951-4946970 Msa0625720:intron 30.0%
! AGAAGAAAATCTTTTCTTGC+AGG - chr4_3:4947226-4947245 None:intergenic 30.0%
! TCTCTGTAACCACTTTAAAA+GGG - chr4_3:4947320-4947339 None:intergenic 30.0%
TTCTCTGTAACCACTTTAAA+AGG - chr4_3:4947321-4947340 None:intergenic 30.0%
! GTACTCGTTAACTTCTTTTA+AGG - chr4_3:4947539-4947558 None:intergenic 30.0%
TGTGGAACTTCAAAGAAAAT+AGG + chr4_3:4947590-4947609 Msa0625720:CDS 30.0%
GAACTTCAAAGAAAATAGGA+AGG + chr4_3:4947594-4947613 Msa0625720:CDS 30.0%
AGAAGTGATCACTTATATTG+TGG + chr4_3:4947627-4947646 Msa0625720:CDS 30.0%
TTAGTCAGTGAAACTATCAA+TGG - chr4_3:4947748-4947767 None:intergenic 30.0%
! AACAACTTTTAGACTCTTGT+CGG + chr4_3:4947821-4947840 Msa0625720:intron 30.0%
TGGTTTCCATAATTGAGTTA+TGG + chr4_3:4948002-4948021 Msa0625720:intron 30.0%
GGTTTCCATAATTGAGTTAT+GGG + chr4_3:4948003-4948022 Msa0625720:intron 30.0%
TCAAATATGCTAACAAGTCT+TGG + chr4_3:4948297-4948316 Msa0625720:intron 30.0%
TTATTAAATCGCTGCATTGA+CGG + chr4_3:4948367-4948386 Msa0625720:intron 30.0%
GAAGTACATCATATCTCAAT+CGG + chr4_3:4948648-4948667 Msa0625720:three_prime_UTR 30.0%
AAGTACATCATATCTCAATC+GGG + chr4_3:4948649-4948668 Msa0625720:three_prime_UTR 30.0%
TTCAGTAGAAAGATAGAAGT+AGG + chr4_3:4948716-4948735 Msa0625720:three_prime_UTR 30.0%
! ATAGAAGTAGGACATTTTCA+TGG + chr4_3:4948728-4948747 Msa0625720:three_prime_UTR 30.0%
CTAATTTAAGTCTGAACTGA+AGG - chr4_3:4948754-4948773 None:intergenic 30.0%
ATGAAGTATGAAACTGTTAC+TGG + chr4_3:4948854-4948873 Msa0625720:three_prime_UTR 30.0%
ATGTAAAAAAAGGCAACCAT+TGG - chr4_3:4948923-4948942 None:intergenic 30.0%
TATTAAAACTCACTCCTCCT+AGG + chr4_3:4943775-4943794 Msa0625720:five_prime_UTR 35.0%
ATTAAAACTCACTCCTCCTA+GGG + chr4_3:4943776-4943795 Msa0625720:five_prime_UTR 35.0%
TCAGAAAAGGAACGTGAAAA+TGG - chr4_3:4943826-4943845 None:intergenic 35.0%
GATGAAATTGCAGAGGAAAA+TGG - chr4_3:4943858-4943877 None:intergenic 35.0%
! GGTCATGGTTTATGTGATTT+TGG + chr4_3:4944303-4944322 Msa0625720:intron 35.0%
!!! CTTTTTTGTGATGGGACTAA+GGG + chr4_3:4944384-4944403 Msa0625720:intron 35.0%
AAATGCAGTCTGCTACTAAA+TGG - chr4_3:4944437-4944456 None:intergenic 35.0%
! AGAACAATAATGGGACACTT+AGG + chr4_3:4944666-4944685 Msa0625720:CDS 35.0%
! TTTTTCTTTCCCGAGCAATA+CGG - chr4_3:4944695-4944714 None:intergenic 35.0%
! AAACAGAAGCACAAAACAGA+AGG + chr4_3:4944775-4944794 Msa0625720:CDS 35.0%
TGATTCTGGATACTTGCAAA+AGG + chr4_3:4944958-4944977 Msa0625720:CDS 35.0%
ACTTCAACAATGACTGGAAT+GGG + chr4_3:4945050-4945069 Msa0625720:CDS 35.0%
GACTAAACGTTGTGGAAAAA+AGG + chr4_3:4945108-4945127 Msa0625720:CDS 35.0%
AACGTTGTGGAAAAAAGGAT+TGG + chr4_3:4945113-4945132 Msa0625720:CDS 35.0%
TCAAAGCAGAAATAGCATTG+TGG + chr4_3:4945279-4945298 Msa0625720:CDS 35.0%
AAATAGCATTGTGGAAAACC+TGG + chr4_3:4945288-4945307 Msa0625720:CDS 35.0%
ATCTCAACAAGATGCAGTAT+AGG + chr4_3:4945338-4945357 Msa0625720:CDS 35.0%
! CTTCACAATGCTTTTGTTGA+AGG + chr4_3:4945412-4945431 Msa0625720:CDS 35.0%
AGGGAAAAAAACACTTGCAT+TGG + chr4_3:4945482-4945501 Msa0625720:intron 35.0%
ATTTGATCTGTCTTTCTCTG+TGG + chr4_3:4945827-4945846 Msa0625720:intron 35.0%
GATCAACCAAGAACATTAGT+AGG - chr4_3:4945856-4945875 None:intergenic 35.0%
GATTTGACTAACAATGTCGT+TGG + chr4_3:4945878-4945897 Msa0625720:intron 35.0%
! GCTTTTAGCATATAGACTCT+GGG - chr4_3:4946035-4946054 None:intergenic 35.0%
! AGCTTTTAGCATATAGACTC+TGG - chr4_3:4946036-4946055 None:intergenic 35.0%
GCATGTAAAGGTTAGAAAGT+GGG - chr4_3:4946250-4946269 None:intergenic 35.0%
AGCATGTAAAGGTTAGAAAG+TGG - chr4_3:4946251-4946270 None:intergenic 35.0%
TTCTAACCTTTACATGCTTG+AGG + chr4_3:4946253-4946272 Msa0625720:intron 35.0%
! CTTTTCATAACCAAGTGAGT+AGG - chr4_3:4946450-4946469 None:intergenic 35.0%
TTGAAGACATTCACAATGGA+TGG - chr4_3:4946517-4946536 None:intergenic 35.0%
TCAGTTGAAGACATTCACAA+TGG - chr4_3:4946521-4946540 None:intergenic 35.0%
! CAACTGAAGGATCTTGTTTA+AGG - chr4_3:4946581-4946600 None:intergenic 35.0%
CTTAAACAAGATCCTTCAGT+TGG + chr4_3:4946579-4946598 Msa0625720:CDS 35.0%
ACACGAAGATAAAGGTTAGA+AGG - chr4_3:4946927-4946946 None:intergenic 35.0%
AATCTATGCACCTTGTTAGT+TGG - chr4_3:4946964-4946983 None:intergenic 35.0%
! TCTTATTTCCTAAAGAGAGG+TGG - chr4_3:4947029-4947048 None:intergenic 35.0%
GTTCTGCTGTGAATATATTG+TGG + chr4_3:4947065-4947084 Msa0625720:intron 35.0%
! ACTGGTGCCAAAACTAATAT+TGG + chr4_3:4947156-4947175 Msa0625720:CDS 35.0%
!!! CTTGGTGCCAATATTAGTTT+TGG - chr4_3:4947166-4947185 None:intergenic 35.0%
AAACTAATATTGGCACCAAG+AGG + chr4_3:4947166-4947185 Msa0625720:CDS 35.0%
! AGATTTTCTTCTGATGAAGC+TGG + chr4_3:4947234-4947253 Msa0625720:CDS 35.0%
! GATTTTCTTCTGATGAAGCT+GGG + chr4_3:4947235-4947254 Msa0625720:CDS 35.0%
AAAATGTGAAGAACTCAGCT+TGG + chr4_3:4947292-4947311 Msa0625720:CDS 35.0%
TACAGAGAATGATAACCATG+TGG + chr4_3:4947332-4947351 Msa0625720:CDS 35.0%
GAAACTACAAAAGCTGAAGA+AGG + chr4_3:4947477-4947496 Msa0625720:CDS 35.0%
TACAAAAGCTGAAGAAGGAA+TGG + chr4_3:4947482-4947501 Msa0625720:CDS 35.0%
ACAAAAGCTGAAGAAGGAAT+GGG + chr4_3:4947483-4947502 Msa0625720:CDS 35.0%
ATATCAATGCAGTGCTAAAC+AGG - chr4_3:4947724-4947743 None:intergenic 35.0%
! ACAACTTTTAGACTCTTGTC+GGG + chr4_3:4947822-4947841 Msa0625720:intron 35.0%
TCACACCCATAACTCAATTA+TGG - chr4_3:4948011-4948030 None:intergenic 35.0%
ATGCAGCGATTTAATAACAC+AGG - chr4_3:4948364-4948383 None:intergenic 35.0%
! TATTAAATCGCTGCATTGAC+GGG + chr4_3:4948368-4948387 Msa0625720:intron 35.0%
CAAAATTATCCATGACAGAC+AGG - chr4_3:4948430-4948449 None:intergenic 35.0%
! GAAACTATGACCATTTTCGT+TGG + chr4_3:4948677-4948696 Msa0625720:three_prime_UTR 35.0%
ATATAGCTGTCCAACGAAAA+TGG - chr4_3:4948690-4948709 None:intergenic 35.0%
! GAAACTGTTACTGGTTATCA+CGG + chr4_3:4948863-4948882 Msa0625720:three_prime_UTR 35.0%
CCTGGCATACATGTAAAAAA+AGG - chr4_3:4948933-4948952 None:intergenic 35.0%
!!! CCTTTTTTTACATGTATGCC+AGG + chr4_3:4948930-4948949 Msa0625720:three_prime_UTR 35.0%
AATTGAATGCACGAAACCCT+AGG - chr4_3:4943795-4943814 None:intergenic 40.0%
TTACAGCGATGAAATTGCAG+AGG - chr4_3:4943865-4943884 None:intergenic 40.0%
!!! GCTTTTTTGTGATGGGACTA+AGG + chr4_3:4944383-4944402 Msa0625720:intron 40.0%
GCACTCTCCCAAAAGAAAAA+GGG - chr4_3:4944493-4944512 None:intergenic 40.0%
TGCACTCTCCCAAAAGAAAA+AGG - chr4_3:4944494-4944513 None:intergenic 40.0%
! CATTTTTCGCACAGCTTCAA+TGG + chr4_3:4944544-4944563 Msa0625720:intron 40.0%
AAAACAGAAGGCAAACCATC+TGG + chr4_3:4944787-4944806 Msa0625720:CDS 40.0%
AAAACTTTGCAAGAGCCAGA+TGG - chr4_3:4944805-4944824 None:intergenic 40.0%
! TGGCTCTTGCAAAGTTTTTG+AGG + chr4_3:4944807-4944826 Msa0625720:CDS 40.0%
! TCCAAGTTGAGAACTACGTT+TGG + chr4_3:4944897-4944916 Msa0625720:CDS 40.0%
AAGAACGTATGAACAGCCAA+TGG - chr4_3:4945001-4945020 None:intergenic 40.0%
GTTCATACGTTCTTGATGGA+TGG + chr4_3:4945007-4945026 Msa0625720:CDS 40.0%
GACTTCAACAATGACTGGAA+TGG + chr4_3:4945049-4945068 Msa0625720:CDS 40.0%
ATGCAAGTGAGCTTGAGAAA+TGG + chr4_3:4945080-4945099 Msa0625720:CDS 40.0%
! TGGTTTGAGACTAAACGTTG+TGG + chr4_3:4945100-4945119 Msa0625720:CDS 40.0%
CAGGACAGTTCAGAGATTTA+CGG + chr4_3:4945151-4945170 Msa0625720:CDS 40.0%
ACAGTTCAGAGATTTACGGT+TGG + chr4_3:4945155-4945174 Msa0625720:CDS 40.0%
CAGTTCAGAGATTTACGGTT+GGG + chr4_3:4945156-4945175 Msa0625720:CDS 40.0%
TATAATTGTCCAGGGTCGAT+TGG + chr4_3:4945196-4945215 Msa0625720:CDS 40.0%
ATAATTGTCCAGGGTCGATT+GGG + chr4_3:4945197-4945216 Msa0625720:CDS 40.0%
AGAAGACTATGTCCTTGAGT+AGG + chr4_3:4945368-4945387 Msa0625720:CDS 40.0%
AAATGAGGAAGCTTGATACC+TGG + chr4_3:4945628-4945647 Msa0625720:CDS 40.0%
TTAGTACCTCACGCTTGTTT+AGG - chr4_3:4945662-4945681 None:intergenic 40.0%
TGGTCTCCTACTAATGTTCT+TGG + chr4_3:4945847-4945866 Msa0625720:intron 40.0%
ATTCAAATCAAGGGCAACCA+AGG - chr4_3:4945929-4945948 None:intergenic 40.0%
GTGGAAGGCCAATTAAAGTT+GGG - chr4_3:4945997-4946016 None:intergenic 40.0%
TGTGGAAGGCCAATTAAAGT+TGG - chr4_3:4945998-4946017 None:intergenic 40.0%
!! TAGACTCTGGGACAAATTAG+CGG - chr4_3:4946023-4946042 None:intergenic 40.0%
! ATTGATTCCTGGAGTCTTTC+TGG - chr4_3:4946350-4946369 None:intergenic 40.0%
TAGCTGATGAGAATGTCTTC+AGG + chr4_3:4946400-4946419 Msa0625720:CDS 40.0%
GTGAATGTCTTCAACTGATG+TGG + chr4_3:4946523-4946542 Msa0625720:intron 40.0%
TCCAAACTACCAGAGAGAAA+AGG + chr4_3:4946549-4946568 Msa0625720:intron 40.0%
! TCCTTTTCTCTCTGGTAGTT+TGG - chr4_3:4946553-4946572 None:intergenic 40.0%
AAACTACCAGAGAGAAAAGG+AGG + chr4_3:4946552-4946571 Msa0625720:intron 40.0%
!!! CTAGTTGCTTTTCCAACTGA+AGG - chr4_3:4946594-4946613 None:intergenic 40.0%
CTGCAAGTCATGAAACATCT+TGG + chr4_3:4946661-4946680 Msa0625720:CDS 40.0%
TCTTGGAGATCAAGATGATG+CGG + chr4_3:4946678-4946697 Msa0625720:CDS 40.0%
GGAAGAGATGAATTCAGAGT+TGG + chr4_3:4946717-4946736 Msa0625720:CDS 40.0%
CCTGTAGTTCATCATTGCTT+TGG - chr4_3:4946807-4946826 None:intergenic 40.0%
CCAAAGCAATGATGAACTAC+AGG + chr4_3:4946804-4946823 Msa0625720:CDS 40.0%
ATGATGAACTACAGGAAGCT+CGG + chr4_3:4946812-4946831 Msa0625720:CDS 40.0%
GATTATCTCCACCTCTCTTT+AGG + chr4_3:4947018-4947037 Msa0625720:intron 40.0%
GGGTTAAATGAAATGCTGAC+TGG + chr4_3:4947138-4947157 Msa0625720:CDS 40.0%
TAATATTGGCACCAAGAGGA+TGG + chr4_3:4947170-4947189 Msa0625720:CDS 40.0%
AATATTGGCACCAAGAGGAT+GGG + chr4_3:4947171-4947190 Msa0625720:CDS 40.0%
TCACAAAAACCTTCTGGTCA+AGG - chr4_3:4947200-4947219 None:intergenic 40.0%
AGGCATTCACAAAAACCTTC+TGG - chr4_3:4947206-4947225 None:intergenic 40.0%
TTCTGATGAAGCTGGGATAA+AGG + chr4_3:4947242-4947261 Msa0625720:CDS 40.0%
GCTTTATGGTACATACCACA+TGG - chr4_3:4947350-4947369 None:intergenic 40.0%
! AAACACAGAGCATGGCTTTA+TGG - chr4_3:4947364-4947383 None:intergenic 40.0%
TACGCAAAAAACACAGAGCA+TGG - chr4_3:4947372-4947391 None:intergenic 40.0%
CAAAAGCTGAAGAAGGAATG+GGG + chr4_3:4947484-4947503 Msa0625720:CDS 40.0%
ATGTGCATATGACTGCAACT+GGG - chr4_3:4947799-4947818 None:intergenic 40.0%
ATTGAGTTATGGGTGTGACT+TGG + chr4_3:4948013-4948032 Msa0625720:intron 40.0%
TTGAGTTATGGGTGTGACTT+GGG + chr4_3:4948014-4948033 Msa0625720:intron 40.0%
CTGGTTGATTGCAATTGAAG+TGG + chr4_3:4948131-4948150 Msa0625720:intron 40.0%
GCTTTGCACCTCACATATAT+TGG + chr4_3:4948334-4948353 Msa0625720:intron 40.0%
AGTTTATCTTGAGGCTTTGC+AGG + chr4_3:4948622-4948641 Msa0625720:intron 40.0%
GTTTATCTTGAGGCTTTGCA+GGG + chr4_3:4948623-4948642 Msa0625720:intron 40.0%
TACATCATATCTCAATCGGG+AGG + chr4_3:4948652-4948671 Msa0625720:three_prime_UTR 40.0%
GTTATCACGGTTATCGCATA+CGG + chr4_3:4948876-4948895 Msa0625720:three_prime_UTR 40.0%
ATGGAAGCTCAGCTCAGAAA+AGG - chr4_3:4943839-4943858 None:intergenic 45.0%
CCAGCCCTTAACTCTTCATA+TGG - chr4_3:4944632-4944651 None:intergenic 45.0%
CCATATGAAGAGTTAAGGGC+TGG + chr4_3:4944629-4944648 Msa0625720:CDS 45.0%
ACTTAGGTGTCCGTATTGCT+CGG + chr4_3:4944682-4944701 Msa0625720:CDS 45.0%
TTGCTCGGGAAAGAAAAAGC+AGG + chr4_3:4944697-4944716 Msa0625720:CDS 45.0%
! ATCTGGAGTAGGCAAAGGTT+CGG + chr4_3:4944751-4944770 Msa0625720:CDS 45.0%
AGTTCTCAACTTGGACAGGT+TGG - chr4_3:4944892-4944911 None:intergenic 45.0%
ACGTAGTTCTCAACTTGGAC+AGG - chr4_3:4944896-4944915 None:intergenic 45.0%
GCCAAACGTAGTTCTCAACT+TGG - chr4_3:4944901-4944920 None:intergenic 45.0%
TTGACAAGTATGCCTGTCCA+CGG - chr4_3:4944923-4944942 None:intergenic 45.0%
GGCTGTTCATACGTTCTTGA+TGG + chr4_3:4945003-4945022 Msa0625720:CDS 45.0%
TTGGAATTCCATGGACTTGC+AGG + chr4_3:4945132-4945151 Msa0625720:CDS 45.0%
TAATTGTCCAGGGTCGATTG+GGG + chr4_3:4945198-4945217 Msa0625720:CDS 45.0%
AGTACCTTCGCAACAAAGGA+AGG + chr4_3:4945221-4945240 Msa0625720:CDS 45.0%
TATGTCCTTGAGTAGGATGC+TGG + chr4_3:4945375-4945394 Msa0625720:CDS 45.0%
! TGAGGAGGTACGAAGGATAT+TGG + chr4_3:4945569-4945588 Msa0625720:CDS 45.0%
AGGTACTAACCGATCAAGAG+AGG + chr4_3:4945673-4945692 Msa0625720:CDS 45.0%
CAGTTTCTGCCTCTCTTGAT+CGG - chr4_3:4945685-4945704 None:intergenic 45.0%
ACTGGAAGAGGACAAGAAGA+AGG + chr4_3:4945701-4945720 Msa0625720:CDS 45.0%
!! AGACTCTGGGACAAATTAGC+GGG - chr4_3:4946022-4946041 None:intergenic 45.0%
! GGGATATCAGAAAGCACATC+TGG - chr4_3:4946230-4946249 None:intergenic 45.0%
AAGGCTCCTCAAGCATGTAA+AGG - chr4_3:4946262-4946281 None:intergenic 45.0%
ATTCCTGGAGTCTTTCTGGA+AGG - chr4_3:4946346-4946365 None:intergenic 45.0%
! CAACTGGAGTGATTGATTCC+TGG - chr4_3:4946361-4946380 None:intergenic 45.0%
CAGGAATCAATCACTCCAGT+TGG + chr4_3:4946359-4946378 Msa0625720:CDS 45.0%
AGCTATCTTCTGCTCCTTTG+AGG - chr4_3:4946385-4946404 None:intergenic 45.0%
!! CAGGCTTGTTGAAGAGCAAA+AGG + chr4_3:4946419-4946438 Msa0625720:CDS 45.0%
AAAGGTTTGCCCTACTCACT+TGG + chr4_3:4946437-4946456 Msa0625720:CDS 45.0%
GGTGGAGATAATCTTCATGC+AGG - chr4_3:4947011-4947030 None:intergenic 45.0%
CTGTCGAGCTTTGCTCTTTA+TGG + chr4_3:4947265-4947284 Msa0625720:CDS 45.0%
!! AGCTTGGCACCCTTTTAAAG+TGG + chr4_3:4947308-4947327 Msa0625720:CDS 45.0%
AAACAGTATACCCACCACTG+GGG - chr4_3:4947564-4947583 None:intergenic 45.0%
CAAACAGTATACCCACCACT+GGG - chr4_3:4947565-4947584 None:intergenic 45.0%
!! CAGTGGTGGGTATACTGTTT+GGG + chr4_3:4947564-4947583 Msa0625720:CDS 45.0%
AAGCAACTTAAGCGCAAGAG+AGG + chr4_3:4947658-4947677 Msa0625720:CDS 45.0%
AAGAGAGGAGGATAGGCAAA+AGG + chr4_3:4947673-4947692 Msa0625720:exon 45.0%
CATGTGCATATGACTGCAAC+TGG - chr4_3:4947800-4947819 None:intergenic 45.0%
!! CAGGAGCACCAATATATGTG+AGG - chr4_3:4948345-4948364 None:intergenic 45.0%
GACAGACAGGAGCAATTGAA+AGG - chr4_3:4948417-4948436 None:intergenic 45.0%
TCAATTGCTCCTGTCTGTCA+TGG + chr4_3:4948418-4948437 Msa0625720:intron 45.0%
ATCATATCTCAATCGGGAGG+TGG + chr4_3:4948655-4948674 Msa0625720:three_prime_UTR 45.0%
TGAATGCACGAAACCCTAGG+AGG - chr4_3:4943792-4943811 None:intergenic 50.0%
! GATCAGTGAGTCTGAGATCG+AGG + chr4_3:4944592-4944611 Msa0625720:CDS 50.0%
CTTAGGTGTCCGTATTGCTC+GGG + chr4_3:4944683-4944702 Msa0625720:CDS 50.0%
GATCTGTTGCAGCATGCATC+TGG + chr4_3:4944734-4944753 Msa0625720:CDS 50.0%
! TTGCAGCATGCATCTGGAGT+AGG + chr4_3:4944740-4944759 Msa0625720:CDS 50.0%
! CATGCATCTGGAGTAGGCAA+AGG + chr4_3:4944746-4944765 Msa0625720:CDS 50.0%
ACGACAGCTAAGGTCAAAGC+CGG - chr4_3:4944869-4944888 None:intergenic 50.0%
TTGAGAACTACGTTTGGCCG+TGG + chr4_3:4944903-4944922 Msa0625720:CDS 50.0%
! CTTGATGGATGGTAACTGCG+TGG + chr4_3:4945018-4945037 Msa0625720:CDS 50.0%
TGAACTGTCCTGCAAGTCCA+TGG - chr4_3:4945143-4945162 None:intergenic 50.0%
TCAGCCTTCCTTTGTTGCGA+AGG - chr4_3:4945228-4945247 None:intergenic 50.0%
TTCGCAACAAAGGAAGGCTG+AGG + chr4_3:4945227-4945246 Msa0625720:CDS 50.0%
CTTGTTTAGGTCTCTGCTCC+AGG - chr4_3:4945649-4945668 None:intergenic 50.0%
CAGAGACCTAAACAAGCGTG+AGG + chr4_3:4945653-4945672 Msa0625720:CDS 50.0%
CGATCAAGAGAGGCAGAAAC+TGG + chr4_3:4945683-4945702 Msa0625720:CDS 50.0%
AGAGAGGCAGAAACTGGAAG+AGG + chr4_3:4945689-4945708 Msa0625720:CDS 50.0%
!! ACAAATTAGCGGGCTGTGGA+AGG - chr4_3:4946012-4946031 None:intergenic 50.0%
TGTCCTTCCAGAAAGACTCC+AGG + chr4_3:4946340-4946359 Msa0625720:intron 50.0%
! ATCACTCCAGTTGGCCTCAA+AGG + chr4_3:4946368-4946387 Msa0625720:CDS 50.0%
CTACCAGAGAGAAAAGGAGG+AGG + chr4_3:4946555-4946574 Msa0625720:intron 50.0%
CGAGCTTTGCTCTTTATGGC+AGG + chr4_3:4947269-4947288 Msa0625720:CDS 50.0%
GTTAACGAGTACAACCCCAG+TGG + chr4_3:4947547-4947566 Msa0625720:CDS 50.0%
CCAAACAGTATACCCACCAC+TGG - chr4_3:4947566-4947585 None:intergenic 50.0%
!! CCAGTGGTGGGTATACTGTT+TGG + chr4_3:4947563-4947582 Msa0625720:CDS 50.0%
GGTATACTGTTTGGGAGCTG+TGG + chr4_3:4947572-4947591 Msa0625720:CDS 50.0%
CAACTTAAGCGCAAGAGAGG+AGG + chr4_3:4947661-4947680 Msa0625720:CDS 50.0%
TAAGCGCAAGAGAGGAGGAT+AGG + chr4_3:4947666-4947685 Msa0625720:CDS 50.0%
CGACAGCTAAGGTCAAAGCC+GGG - chr4_3:4944868-4944887 None:intergenic 55.0%
! GACAGGTTGGACGACAGCTA+AGG - chr4_3:4944879-4944898 None:intergenic 55.0%
AACTACGTTTGGCCGTGGAC+AGG + chr4_3:4944908-4944927 Msa0625720:CDS 55.0%
!! GGGGAGTACCTTCGCAACAA+AGG + chr4_3:4945217-4945236 Msa0625720:CDS 55.0%
GTCCTTGAGTAGGATGCTGG+AGG + chr4_3:4945378-4945397 Msa0625720:CDS 55.0%
CTCCTCCAGCATCCTACTCA+AGG - chr4_3:4945383-4945402 None:intergenic 55.0%
CATGCAGCGTAAAGCTCGTG+AGG + chr4_3:4945551-4945570 Msa0625720:CDS 55.0%
! AAGCTCGTGAGGAGGTACGA+AGG + chr4_3:4945562-4945581 Msa0625720:CDS 55.0%
!! TGGGACAAATTAGCGGGCTG+TGG - chr4_3:4946016-4946035 None:intergenic 55.0%
!! TCTGCTCCTTTGAGGCCAAC+TGG - chr4_3:4946377-4946396 None:intergenic 55.0%
! AGGCCTCCTCCTTTTCTCTC+TGG - chr4_3:4946561-4946580 None:intergenic 55.0%
GTCAAGGTCTCCCATCCTCT+TGG - chr4_3:4947184-4947203 None:intergenic 55.0%
GATGGGAGACCTTGACCAGA+AGG + chr4_3:4947188-4947207 Msa0625720:CDS 55.0%
AACGAGTACAACCCCAGTGG+TGG + chr4_3:4947550-4947569 Msa0625720:CDS 55.0%
ACGAGTACAACCCCAGTGGT+GGG + chr4_3:4947551-4947570 Msa0625720:CDS 55.0%
AGCAGACCAAGTACCTCGCC+CGG + chr4_3:4944847-4944866 Msa0625720:CDS 60.0%
! TCAAAGCCGGGCGAGGTACT+TGG - chr4_3:4944856-4944875 None:intergenic 60.0%
AGGTACTCCCCAATCGACCC+TGG - chr4_3:4945208-4945227 None:intergenic 60.0%
GCAGCGTAAAGCTCGTGAGG+AGG + chr4_3:4945554-4945573 Msa0625720:CDS 60.0%
GCTAAGGTCAAAGCCGGGCG+AGG - chr4_3:4944863-4944882 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4943771 4948953 4943771 ID=Msa0625720;Name=Msa0625720
chr4_3 mRNA 4943771 4948953 4943771 ID=Msa0625720-mRNA-1;Parent=Msa0625720;Name=Msa0625720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=115|0.85|0.87|1|0.71|0.62|8|317|641
chr4_3 exon 4943771 4943880 4943771 ID=Msa0625720-mRNA-1:exon:1351;Parent=Msa0625720-mRNA-1
chr4_3 exon 4944558 4945433 4944558 ID=Msa0625720-mRNA-1:exon:1352;Parent=Msa0625720-mRNA-1
chr4_3 exon 4945541 4945722 4945541 ID=Msa0625720-mRNA-1:exon:1353;Parent=Msa0625720-mRNA-1
chr4_3 exon 4946351 4946485 4946351 ID=Msa0625720-mRNA-1:exon:1354;Parent=Msa0625720-mRNA-1
chr4_3 exon 4946562 4946849 4946562 ID=Msa0625720-mRNA-1:exon:1355;Parent=Msa0625720-mRNA-1
chr4_3 exon 4947138 4947353 4947138 ID=Msa0625720-mRNA-1:exon:1356;Parent=Msa0625720-mRNA-1
chr4_3 exon 4947454 4947694 4947454 ID=Msa0625720-mRNA-1:exon:1357;Parent=Msa0625720-mRNA-1
chr4_3 exon 4948644 4948953 4948644 ID=Msa0625720-mRNA-1:exon:1358;Parent=Msa0625720-mRNA-1
chr4_3 five_prime_UTR 4943771 4943880 4943771 ID=Msa0625720-mRNA-1:five_prime_utr;Parent=Msa0625720-mRNA-1
chr4_3 five_prime_UTR 4944558 4944562 4944558 ID=Msa0625720-mRNA-1:five_prime_utr;Parent=Msa0625720-mRNA-1
chr4_3 CDS 4944563 4945433 4944563 ID=Msa0625720-mRNA-1:cds;Parent=Msa0625720-mRNA-1
chr4_3 CDS 4945541 4945722 4945541 ID=Msa0625720-mRNA-1:cds;Parent=Msa0625720-mRNA-1
chr4_3 CDS 4946351 4946485 4946351 ID=Msa0625720-mRNA-1:cds;Parent=Msa0625720-mRNA-1
chr4_3 CDS 4946562 4946849 4946562 ID=Msa0625720-mRNA-1:cds;Parent=Msa0625720-mRNA-1
chr4_3 CDS 4947138 4947353 4947138 ID=Msa0625720-mRNA-1:cds;Parent=Msa0625720-mRNA-1
chr4_3 CDS 4947454 4947687 4947454 ID=Msa0625720-mRNA-1:cds;Parent=Msa0625720-mRNA-1
chr4_3 three_prime_UTR 4947688 4947694 4947688 ID=Msa0625720-mRNA-1:three_prime_utr;Parent=Msa0625720-mRNA-1
chr4_3 three_prime_UTR 4948644 4948953 4948644 ID=Msa0625720-mRNA-1:three_prime_utr;Parent=Msa0625720-mRNA-1
Gene Sequence

>Msa0625720

ATGGACTACAGCTCTGAAGAAGAGTCAGAGATCAGTGAGTCTGAGATCGAGGAATACTCTGAGAAACCATATGAAGAGTTAAGGGCTGGTAAATACAAAGTGAAGAACAATAATGGGACACTTAGGTGTCCGTATTGCTCGGGAAAGAAAAAGCAGGAATTCAAATATAAGGATCTGTTGCAGCATGCATCTGGAGTAGGCAAAGGTTCGGCAAACAGAAGCACAAAACAGAAGGCAAACCATCTGGCTCTTGCAAAGTTTTTGAGGACTGACTTAGCAAATGAAGCAGACCAAGTACCTCGCCCGGCTTTGACCTTAGCTGTCGTCCAACCTGTCCAAGTTGAGAACTACGTTTGGCCGTGGACAGGCATACTTGTCAATATAAGCAAATCACATGATTCTGGATACTTGCAAAAGGAATTTGCTAAGTACAAACCATTGGCTGTTCATACGTTCTTGATGGATGGTAACTGCGTGGCTGTTATAGACTTCAACAATGACTGGAATGGGTTTATGAATGCAAGTGAGCTTGAGAAATGGTTTGAGACTAAACGTTGTGGAAAAAAGGATTGGAATTCCATGGACTTGCAGGACAGTTCAGAGATTTACGGTTGGGTTGCACGTGAAGATGATTATAATTGTCCAGGGTCGATTGGGGAGTACCTTCGCAACAAAGGAAGGCTGAGGACAATTTCAGATATAGTTCAAGAAGCATCTCAAAGCAGAAATAGCATTGTGGAAAACCTGGCAAATGAGATTGATATTACTAATGAAAATCTCAACAAGATGCAGTATAGGTATAATGAGAAGACTATGTCCTTGAGTAGGATGCTGGAGGAGAAAGACAAACTTCACAATGCTTTTGTTGAAGAGTCAAGGAGCATGCAGCGTAAAGCTCGTGAGGAGGTACGAAGGATATTGGAAGAACAAGAAAAGTTGAGTAATGAATTGGATGAAAAAATGAGGAAGCTTGATACCTGGAGCAGAGACCTAAACAAGCGTGAGGTACTAACCGATCAAGAGAGGCAGAAACTGGAAGAGGACAAGAAGAAGAAAGACTCCAGGAATCAATCACTCCAGTTGGCCTCAAAGGAGCAGAAGATAGCTGATGAGAATGTCTTCAGGCTTGTTGAAGAGCAAAAGGTTTGCCCTACTCACTTGGTTATGAAAAGACAATACTACAGTAGTAGAGAAAAGGAGGAGGCCTTAAACAAGATCCTTCAGTTGGAAAAGCAACTAGATGCCAAACAAAAATTGGAAATGGAAATTGAAGAACTAAAAGGGAAACTGCAAGTCATGAAACATCTTGGAGATCAAGATGATGCGGCTATTAAGAAAAAAATGGAAGAGATGAATTCAGAGTTGGAAGACAAAATAGAAAGTTTGGAAGATATGGAGTCTATGAATTTAACGCTTATTGTCAAGGAGCGCCAAAGCAATGATGAACTACAGGAAGCTCGGAAAGAATTAATAGAAGGGTTAAATGAAATGCTGACTGGTGCCAAAACTAATATTGGCACCAAGAGGATGGGAGACCTTGACCAGAAGGTTTTTGTGAATGCCTGCAAGAAAAGATTTTCTTCTGATGAAGCTGGGATAAAGGCTGTCGAGCTTTGCTCTTTATGGCAGGAAAATGTGAAGAACTCAGCTTGGCACCCTTTTAAAGTGGTTACAGAGAATGATAACCATGTGTCAGTTATAGATGAGAAAGATGAGAAACTACAAAAGCTGAAGAAGGAATGGGGAGACGAGATATATTCAGCTGTTGTAACAGCCTTAAAAGAAGTTAACGAGTACAACCCCAGTGGTGGGTATACTGTTTGGGAGCTGTGGAACTTCAAAGAAAATAGGAAGGCAACACTGAAAGAAGTGATCACTTATATTGTGGATCACATGAAGCAACTTAAGCGCAAGAGAGGAGGATAG
Protein sequence

>Msa0625720

MDYSSEEESEISESEIEEYSEKPYEELRAGKYKVKNNNGTLRCPYCSGKKKQEFKYKDLLQHASGVGKGSANRSTKQKANHLALAKFLRTDLANEADQVPRPALTLAVVQPVQVENYVWPWTGILVNISKSHDSGYLQKEFAKYKPLAVHTFLMDGNCVAVIDFNNDWNGFMNASELEKWFETKRCGKKDWNSMDLQDSSEIYGWVAREDDYNCPGSIGEYLRNKGRLRTISDIVQEASQSRNSIVENLANEIDITNENLNKMQYRYNEKTMSLSRMLEEKDKLHNAFVEESRSMQRKAREEVRRILEEQEKLSNELDEKMRKLDTWSRDLNKREVLTDQERQKLEEDKKKKDSRNQSLQLASKEQKIADENVFRLVEEQKVCPTHLVMKRQYYSSREKEEALNKILQLEKQLDAKQKLEMEIEELKGKLQVMKHLGDQDDAAIKKKMEEMNSELEDKIESLEDMESMNLTLIVKERQSNDELQEARKELIEGLNEMLTGAKTNIGTKRMGDLDQKVFVNACKKRFSSDEAGIKAVELCSLWQENVKNSAWHPFKVVTENDNHVSVIDEKDEKLQKLKKEWGDEIYSAVVTALKEVNEYNPSGGYTVWELWNFKENRKATLKEVITYIVDHMKQLKRKRGG*