AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054480 MtrunA17_Chr1g0156231 86.388 551 15 3 1 540 1 502 0.0 952
Msa0054480 MtrunA17_Chr1g0159451 44.937 158 77 2 142 290 251 407 3.77e-29 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054480 AT5G67240.2 48.478 427 195 7 1 405 1 424 1.78e-133 397
Msa0054480 AT5G67240.3 48.478 427 195 7 1 405 1 424 2.61e-132 399
Msa0054480 AT5G67240.3 32.500 160 102 3 306 461 465 622 2.02e-16 82.8
Msa0054480 AT5G67240.4 48.712 427 194 7 1 405 1 424 3.93e-132 399
Msa0054480 AT5G67240.4 45.000 100 54 1 306 405 465 563 5.79e-19 90.9
Msa0054480 AT5G67240.1 48.712 427 194 7 1 405 1 424 8.13e-131 400
Msa0054480 AT5G67240.1 45.000 100 54 1 306 405 465 563 6.76e-19 90.9
Msa0054480 AT5G67240.1 32.500 160 102 3 306 461 604 761 3.58e-16 82.4
Msa0054480 AT3G50100.1 45.606 421 201 8 1 405 1 409 2.06e-115 348
Msa0054480 AT5G05540.1 43.026 423 218 8 1 405 1 418 3.00e-96 300
Msa0054480 AT3G50100.2 45.541 314 150 5 102 401 2 308 4.44e-85 266
Msa0054480 AT5G05540.2 44.160 351 174 7 1 334 1 346 5.83e-82 259
Msa0054480 AT3G50090.1 40.979 327 155 7 82 390 12 318 1.53e-66 219
Msa0054480 AT5G25800.1 40.854 164 87 2 142 296 215 377 2.02e-24 107
Msa0054480 AT5G25800.2 40.854 164 87 2 142 296 217 379 2.45e-24 107

Find 138 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCTCCTTGACCGTTTC+TGG 0.065636 1_2:-9210762 None:intergenic
GAACTTTGAACTTAAAATTT+TGG 0.163264 1_2:+9211890 Msa0054480:three_prime_UTR
TAACATACAAATACATTATC+TGG 0.167873 1_2:-9211953 None:intergenic
GTTGAGGATTTCTCCAAATT+AGG 0.182713 1_2:-9204991 None:intergenic
AAACCTCTAAAACCCTAATT+TGG 0.189575 1_2:+9204978 Msa0054480:five_prime_UTR
CAGTTTATTTGTTCGGAAAA+TGG 0.222363 1_2:+9211297 Msa0054480:CDS
TAATGTATTTGTATGTTATT+AGG 0.230798 1_2:+9211958 Msa0054480:three_prime_UTR
GGCTCTTGAACCAATGTTAA+TGG 0.248346 1_2:-9210330 None:intergenic
GAAAGGCATGAAGGGTAAAA+TGG 0.250069 1_2:+9206861 Msa0054480:CDS
CAAAGTTCGAATTGATAAAA+AGG 0.262892 1_2:-9211875 None:intergenic
GGGCTATGAAGTTCGGAAAA+AGG 0.268806 1_2:+9210221 Msa0054480:intron
GTTGGTTGATATTGTAAAAT+TGG 0.270086 1_2:+9206831 Msa0054480:CDS
AAAGAGGTCCCATGAGGTTT+TGG 0.280323 1_2:+9206948 Msa0054480:CDS
AGTGATAAACCTTAAGAAAA+AGG 0.280502 1_2:+9209132 Msa0054480:CDS
AATTACTGCTCTGCATAAAA+TGG 0.290293 1_2:+9211678 Msa0054480:CDS
TAAACTGTGTCCAACTAATA+TGG 0.306541 1_2:-9209643 None:intergenic
ATTCTTACGTCAATTCGATA+TGG 0.317448 1_2:+9205668 Msa0054480:exon
TGAACCAATGTTAATGGAAA+TGG 0.321470 1_2:-9210324 None:intergenic
CTCAAACAAATCCAACAAAA+TGG 0.342268 1_2:-9212045 None:intergenic
TTGAGGATTTCTCCAAATTA+GGG 0.346280 1_2:-9204990 None:intergenic
ATTGTATATGTACCTTTGTT+TGG 0.351180 1_2:-9210853 None:intergenic
CTTCACTTTCTTTCAATCGT+TGG 0.364206 1_2:-9211609 None:intergenic
TGTGGTAGATCTTATCCCTT+TGG 0.364944 1_2:-9209155 None:intergenic
GAGAGAACAGTTGAGGAAAA+AGG 0.366768 1_2:+9211501 Msa0054480:CDS
GTACCTTTGTTTGGCTGCCT+TGG 0.368463 1_2:-9210844 None:intergenic
GTAGGCATGGCACTGGAATA+TGG 0.376241 1_2:+9211738 Msa0054480:exon
AGTTTATTTGTTCGGAAAAT+GGG 0.384251 1_2:+9211298 Msa0054480:CDS
GCACTACACGAAATTGTTCC+TGG 0.385982 1_2:+9210520 Msa0054480:CDS
GGCAATGTCTTAAAACCGTT+TGG 0.390026 1_2:+9211813 Msa0054480:three_prime_UTR
TTATTTGATCATTGAATTCA+AGG 0.391255 1_2:+9211768 Msa0054480:three_prime_UTR
TAACAAACCTTATCAATAGA+TGG 0.392009 1_2:-9207994 None:intergenic
TTCGTTGCCATCTATTGATA+AGG 0.396493 1_2:+9207987 Msa0054480:CDS
ATTACACAAACTTGTTAAAC+CGG 0.400307 1_2:+9209420 Msa0054480:CDS
TACTTTGTGTAGGACTCAAA+TGG 0.401193 1_2:+9211226 Msa0054480:intron
ACCTCATGGGACCTCTTTGA+TGG 0.405801 1_2:-9206943 None:intergenic
TCCAATGGAACCATATTAGT+TGG 0.408073 1_2:+9209633 Msa0054480:CDS
TCTGGTAAATCTCTCTTAGA+TGG 0.409357 1_2:-9211346 None:intergenic
TTATGAAAACATACCTGCTC+AGG 0.413500 1_2:-9207208 None:intergenic
TGTTGTAGATCACAATTTAG+AGG 0.418558 1_2:+9209243 Msa0054480:CDS
TTGACGGCGGCGCCGGTGAA+TGG 0.429902 1_2:-9205029 None:intergenic
GACTACAAAACAGAGATTAC+TGG 0.429986 1_2:+9209457 Msa0054480:CDS
ATTCATCATTCCACTTGCTC+AGG 0.433202 1_2:-9211914 None:intergenic
TGAGTGTCAGTTTATTTGTT+CGG 0.442329 1_2:+9211290 Msa0054480:CDS
TAGGGTGCTGGAGAGTTACT+TGG 0.466593 1_2:-9207948 None:intergenic
TTGCTTCAGCCTTCCAGAAA+CGG 0.466691 1_2:+9210749 Msa0054480:intron
TGCATACATCTTCCAACCCT+TGG 0.468589 1_2:+9209845 Msa0054480:CDS
AAAGGCATGAAGGGTAAAAT+GGG 0.471068 1_2:+9206862 Msa0054480:CDS
TCCAACTAATATGGTTCCAT+TGG 0.471919 1_2:-9209634 None:intergenic
AATGGATCCTGAAGTTGAAA+AGG 0.473741 1_2:+9211408 Msa0054480:CDS
GGTTGCTGTTGATTGTGAAA+TGG 0.476220 1_2:+9209180 Msa0054480:CDS
AGTTGTAAGTTTCATCCAAA+CGG 0.476398 1_2:-9211828 None:intergenic
TGAAGATGGGACTGAAGCTT+TGG 0.477204 1_2:+9209210 Msa0054480:CDS
TAGTCTTTGATTGCTTTCTC+CGG 0.480451 1_2:-9209439 None:intergenic
CTCAACGGATGAGGATTTGA+AGG 0.485414 1_2:+9206990 Msa0054480:CDS
GAATAATCCATTGGATACAT+AGG 0.485454 1_2:-9207967 None:intergenic
ATTCAAGTGTATAATCTTGA+CGG 0.486818 1_2:-9205045 None:intergenic
AGTGGATCATGAAATTGAAA+AGG 0.487238 1_2:+9211555 Msa0054480:CDS
TTGCTCCTTAGCTGATATAC+AGG 0.488234 1_2:+9209510 Msa0054480:CDS
GCTTCAGTGTTCACAGTGGT+TGG 0.489845 1_2:-9210499 None:intergenic
GTAAAATTGGTACAAAAGAA+AGG 0.490743 1_2:+9206844 Msa0054480:CDS
CGATCTATTGTGAAGTCCCC+AGG 0.493552 1_2:-9210538 None:intergenic
TGTCACGTGTCGGCTGAGTA+CGG 0.498224 1_2:+9211264 Msa0054480:CDS
ACATCAACCATCTCGCCCTC+TGG 0.503742 1_2:-9211364 None:intergenic
GATTGACACCGCGGAAAAGA+AGG 0.505994 1_2:+9205698 Msa0054480:CDS
CACTACACGAAATTGTTCCT+GGG 0.507092 1_2:+9210521 Msa0054480:CDS
ATCTCACGATTCCCCTGAGC+AGG 0.509513 1_2:+9207195 Msa0054480:CDS
GGGTAAAATGGGAGACTGGA+AGG 0.511985 1_2:+9206873 Msa0054480:CDS
AGATTTACCAGAGGGCGAGA+TGG 0.514247 1_2:+9211357 Msa0054480:CDS
TGTTTCAATCTCTTTCAAGT+AGG 0.515025 1_2:-9211434 None:intergenic
ACTTTGTGTAGGACTCAAAT+GGG 0.515289 1_2:+9211227 Msa0054480:intron
AAAGACATTCTCAACGGATG+AGG 0.517939 1_2:+9206981 Msa0054480:CDS
GTCACGTGTCGGCTGAGTAC+GGG 0.526262 1_2:+9211265 Msa0054480:CDS
AACTGAATTGAAAACTGAAA+GGG 0.528200 1_2:+9204896 Msa0054480:five_prime_UTR
TATAATCTTGACGGCGGCGC+CGG 0.528437 1_2:-9205036 None:intergenic
AACATACAAATACATTATCT+GGG 0.531489 1_2:-9211952 None:intergenic
ATGAAGAAGTTGTTATCCAA+TGG 0.538388 1_2:+9209618 Msa0054480:CDS
CCTTGGATGGCTCTATTCAC+AGG 0.539512 1_2:+9209862 Msa0054480:CDS
TGATTCCAAGGAAGGAAAAG+TGG 0.539897 1_2:+9211537 Msa0054480:CDS
GAAATGGTTCTCTGTGAAGA+TGG 0.540693 1_2:+9209196 Msa0054480:CDS
CCATTGGATACATAGGGTGC+TGG 0.541606 1_2:-9207960 None:intergenic
AAAAGTAGTAGGCATGGCAC+TGG 0.544537 1_2:+9211731 Msa0054480:exon
TTCATCATTCCACTTGCTCA+GGG 0.546335 1_2:-9211913 None:intergenic
GAAATGCAGCCAAAACCTCA+TGG 0.548328 1_2:-9206957 None:intergenic
GGTACAAAAGAAAGGCATGA+AGG 0.548788 1_2:+9206852 Msa0054480:CDS
GTGCTTCAATCTCTTTCAAG+TGG 0.549104 1_2:-9211582 None:intergenic
TAAGCCATTTCCATTAACAT+TGG 0.550774 1_2:+9210320 Msa0054480:CDS
AATAATCCATTGGATACATA+GGG 0.550785 1_2:-9207966 None:intergenic
TCTCCTTGACCGTTTCTGGA+AGG 0.551707 1_2:-9210758 None:intergenic
ACGATTGAAAGAGAGTGAGT+TGG 0.554197 1_2:+9211465 Msa0054480:CDS
AAACTGAATTGAAAACTGAA+AGG 0.556890 1_2:+9204895 Msa0054480:five_prime_UTR
CAAGTGGATGATTCCAAGGA+AGG 0.556893 1_2:+9211529 Msa0054480:CDS
CCAGCACCCTATGTATCCAA+TGG 0.559697 1_2:+9207960 Msa0054480:CDS
TGAAGGGTAAAATGGGAGAC+TGG 0.560598 1_2:+9206869 Msa0054480:CDS
TACATCTTCCAACCCTTGGA+TGG 0.561701 1_2:+9209849 Msa0054480:CDS
TGCTTCAATCTCTTTCAAGT+GGG 0.564069 1_2:-9211581 None:intergenic
GATGGCAACGAATAATCCAT+TGG 0.567685 1_2:-9207976 None:intergenic
CTTACAAGTGGATGATTCCA+AGG 0.573419 1_2:+9211525 Msa0054480:CDS
GAATAGAGCCATCCAAGGGT+TGG 0.573837 1_2:-9209857 None:intergenic
CTGCTATTCTTATAAAACAC+TGG 0.576582 1_2:+9211792 Msa0054480:three_prime_UTR
AATCATTGAGAGAACAGTTG+AGG 0.578459 1_2:+9211494 Msa0054480:CDS
TCAAGGTTTCAAAGTACAAG+AGG 0.580792 1_2:+9204846 None:intergenic
ATGCATCATGTGCCTCTCGT+TGG 0.582171 1_2:-9210811 None:intergenic
GTACAAAAGAAAGGCATGAA+GGG 0.582899 1_2:+9206853 Msa0054480:CDS
AATTACCTGTATATCAGCTA+AGG 0.584653 1_2:-9209515 None:intergenic
TATGAAAACATACCTGCTCA+GGG 0.585900 1_2:-9207207 None:intergenic
AAATGGTTCTCTGTGAAGAT+GGG 0.588526 1_2:+9209197 Msa0054480:CDS
AAATGCAGCCAAAACCTCAT+GGG 0.595175 1_2:-9206956 None:intergenic
TTAGGTTTCAGAAAGTGAGA+TGG 0.598092 1_2:+9210453 Msa0054480:intron
TCTAAGAGAGATTTACCAGA+GGG 0.607288 1_2:+9211349 Msa0054480:CDS
CAGCCTTCCAGAAACGGTCA+AGG 0.607612 1_2:+9210755 Msa0054480:intron
ATTCCTTCGAAACCATTCAC+CGG 0.609044 1_2:+9205017 Msa0054480:five_prime_UTR
GCGCCGGTGAATGGTTTCGA+AGG 0.610499 1_2:-9205020 None:intergenic
TGTCCAAGGCAGCCAAACAA+AGG 0.611407 1_2:+9210841 Msa0054480:CDS
GATGCATATGAAAATGTCCA+AGG 0.619700 1_2:+9210827 Msa0054480:CDS
GGACTTCACAATAGATCGAA+AGG 0.623377 1_2:+9210543 Msa0054480:CDS
CCTGTGAATAGAGCCATCCA+AGG 0.624216 1_2:-9209862 None:intergenic
ACGATTGAAAGAAAGTGAAG+CGG 0.626577 1_2:+9211612 Msa0054480:CDS
GTTTCGAAGGAATGTCGTTG+AGG 0.629479 1_2:-9205007 None:intergenic
GTTCTTGCAAAGATCAAACA+TGG 0.630093 1_2:+9210291 Msa0054480:CDS
ATTTCTAAAGACATTCTCAA+CGG 0.633013 1_2:+9206975 Msa0054480:CDS
TGCAGAAACTTGTCACGTGT+CGG 0.633987 1_2:+9211254 Msa0054480:CDS
AGCGGAGATTGAATCATCGA+GGG 0.645556 1_2:+9211630 Msa0054480:CDS
GAAGCTTGATTATGTTAGAG+TGG 0.657464 1_2:+9209815 Msa0054480:CDS
TCCTTATAAAATGAAAGACG+TGG 0.666691 1_2:-9204873 None:intergenic
CTGTGAATAGAGCCATCCAA+GGG 0.666796 1_2:-9209861 None:intergenic
ACAATCAACAGCAACCATTG+TGG 0.670727 1_2:-9209173 None:intergenic
ACTACACGAAATTGTTCCTG+GGG 0.691492 1_2:+9210522 Msa0054480:CDS
AAGCGGAGATTGAATCATCG+AGG 0.696061 1_2:+9211629 Msa0054480:CDS
TGACACAAACTATTCAACGA+AGG 0.706014 1_2:-9209888 None:intergenic
AGGGATAAGATCTACCACAA+TGG 0.714725 1_2:+9209159 Msa0054480:CDS
ATCTAAGAGAGATTTACCAG+AGG 0.714858 1_2:+9211348 Msa0054480:CDS
TCCATCAAAGAGGTCCCATG+AGG 0.716207 1_2:+9206942 Msa0054480:CDS
ATGAAAACATACCTGCTCAG+GGG 0.723649 1_2:-9207206 None:intergenic
GGATGAGAAGATTGACACCG+CGG 0.723985 1_2:+9205689 Msa0054480:CDS
GTATGAGCGATCCATCAAAG+AGG 0.733411 1_2:+9206932 Msa0054480:CDS
CAAGTGTATAATCTTGACGG+CGG 0.759053 1_2:-9205042 None:intergenic
TAGTGCTTCAGTGTTCACAG+TGG 0.786374 1_2:-9210503 None:intergenic
AGTTTATATAATGATCTACG+TGG 0.789260 1_2:+9209660 Msa0054480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTAAATTTTATAA+TGG + chr1_2:9207513-9207532 Msa0054480:intron 0.0%
!! ATTTGTAAAAATTATAACAA+TGG - chr1_2:9207601-9207620 None:intergenic 10.0%
!! AAAAAAAAAATCTATAGATA+TGG - chr1_2:9208613-9208632 None:intergenic 10.0%
!! AATAATAAATTGTATATCTT+TGG - chr1_2:9208787-9208806 None:intergenic 10.0%
!! TTATATAGAAATAGAAAATA+TGG - chr1_2:9210988-9211007 None:intergenic 10.0%
!! ATTTCTATATAAATGTTTAA+AGG + chr1_2:9210996-9211015 Msa0054480:intron 10.0%
!! TTTCTATATAAATGTTTAAA+GGG + chr1_2:9210997-9211016 Msa0054480:intron 10.0%
!!! TTCAATTTTTACGAAAAATT+AGG + chr1_2:9205223-9205242 Msa0054480:intron 15.0%
!!! ATAATTACGTTAAATTGTTT+TGG + chr1_2:9205357-9205376 Msa0054480:intron 15.0%
!! TTCTATCAATTTATAACTAA+GGG - chr1_2:9205552-9205571 None:intergenic 15.0%
!!! TGTTTATTTTATTCTCATAT+TGG - chr1_2:9205835-9205854 None:intergenic 15.0%
!! AACAGTAATGATAAAAAATA+TGG + chr1_2:9206904-9206923 Msa0054480:CDS 15.0%
!! ACAGTAATGATAAAAAATAT+GGG + chr1_2:9206905-9206924 Msa0054480:CDS 15.0%
!! TAGAAATACTTATCAATTAT+TGG - chr1_2:9207352-9207371 None:intergenic 15.0%
!!! ATTTTAAAGATAATGCATAA+AGG - chr1_2:9207570-9207589 None:intergenic 15.0%
!! TAAAAAAGCTAAAAAAAACA+TGG + chr1_2:9208270-9208289 Msa0054480:intron 15.0%
!!! ATTTTCTTTAATAAAGCTTA+TGG + chr1_2:9208297-9208316 Msa0054480:intron 15.0%
!! AATTCCTGAAAAAAAAATAA+GGG - chr1_2:9208563-9208582 None:intergenic 15.0%
!! AAATTCCTGAAAAAAAAATA+AGG - chr1_2:9208564-9208583 None:intergenic 15.0%
!! TGCAATTAACAATAAATATT+AGG + chr1_2:9208730-9208749 Msa0054480:intron 15.0%
!! AACAATAAATATTAGGAAAA+TGG + chr1_2:9208737-9208756 Msa0054480:intron 15.0%
!! ACAATAAATATTAGGAAAAT+GGG + chr1_2:9208738-9208757 Msa0054480:intron 15.0%
!! TTAGTTAATTTATTTAGTGA+TGG + chr1_2:9209000-9209019 Msa0054480:intron 15.0%
!! TAATGTATTTGTATGTTATT+AGG + chr1_2:9211958-9211977 Msa0054480:three_prime_UTR 15.0%
!! ATAAAAACAGAGAAACAAAT+AGG + chr1_2:9204934-9204953 Msa0054480:five_prime_UTR 20.0%
!!! ATTATACACTTGAATTTTTG+AGG + chr1_2:9205053-9205072 Msa0054480:five_prime_UTR 20.0%
!!! TGAATTTGATTATGATTTTC+TGG + chr1_2:9205181-9205200 Msa0054480:intron 20.0%
!!! TTATGATTTTCTGGAAATAT+AGG + chr1_2:9205190-9205209 Msa0054480:intron 20.0%
!! CTTCTATCAATTTATAACTA+AGG - chr1_2:9205553-9205572 None:intergenic 20.0%
!! ATCTAATCAAGCAATAAAAT+GGG - chr1_2:9205795-9205814 None:intergenic 20.0%
!! AATCTAATCAAGCAATAAAA+TGG - chr1_2:9205796-9205815 None:intergenic 20.0%
!! TGAGAATAAAATAAACATAG+CGG + chr1_2:9205838-9205857 Msa0054480:intron 20.0%
!!! ATTTCAAGATTTTCTACTAT+GGG - chr1_2:9205940-9205959 None:intergenic 20.0%
!! CATTTCAAAAACAAAACAAA+AGG - chr1_2:9206047-9206066 None:intergenic 20.0%
!!! TGCATTCATTTGAATATTTT+AGG + chr1_2:9206216-9206235 Msa0054480:intron 20.0%
!!! ATTTTGGATAATCATATATC+AGG + chr1_2:9206602-9206621 Msa0054480:intron 20.0%
!!! TTTTGGATAATCATATATCA+GGG + chr1_2:9206603-9206622 Msa0054480:intron 20.0%
!! GGTATAATAAATGTCAATAA+AGG + chr1_2:9206636-9206655 Msa0054480:intron 20.0%
!!! ACATTAAAGTATTAGTTTCT+GGG - chr1_2:9206803-9206822 None:intergenic 20.0%
!!! ATTTTTTATCATTACTGTTC+AGG - chr1_2:9206903-9206922 None:intergenic 20.0%
!!! ATTAACTTTATCTTTAGGAA+AGG - chr1_2:9207071-9207090 None:intergenic 20.0%
!! TTTCATAATGATTGTTATGT+TGG + chr1_2:9207223-9207242 Msa0054480:intron 20.0%
!! AAATTATAACAATGGAACTA+GGG - chr1_2:9207593-9207612 None:intergenic 20.0%
!! AAAATTATAACAATGGAACT+AGG - chr1_2:9207594-9207613 None:intergenic 20.0%
!! AAATAGTCATAAATATGTCA+AGG + chr1_2:9208127-9208146 Msa0054480:intron 20.0%
!!! AAAAGACCATGTTTTTTTTA+AGG - chr1_2:9208221-9208240 None:intergenic 20.0%
!!! TTTTTTTTTGAAGGATAACA+TGG + chr1_2:9208238-9208257 Msa0054480:intron 20.0%
!!! ATTGAAATTACTTTTTCGTA+CGG + chr1_2:9208380-9208399 Msa0054480:intron 20.0%
!! CATATCTATCAATATTTAAG+AGG - chr1_2:9208827-9208846 None:intergenic 20.0%
!! CTCTTAAATATTGATAGATA+TGG + chr1_2:9208825-9208844 Msa0054480:intron 20.0%
!! AAATATTGATAGATATGGAA+TGG + chr1_2:9208830-9208849 Msa0054480:intron 20.0%
!! AAAGCAAATCATATAGTAAA+AGG - chr1_2:9208982-9209001 None:intergenic 20.0%
!! TGTAAATTATTAGTCATACA+AGG + chr1_2:9209052-9209071 Msa0054480:intron 20.0%
!! CTAATAATTCATAAAGTAGA+TGG - chr1_2:9209969-9209988 None:intergenic 20.0%
!! TCATGTTATTCCAATAATTA+CGG - chr1_2:9210624-9210643 None:intergenic 20.0%
!! TCAATTTATGATAAGAAACT+TGG - chr1_2:9211121-9211140 None:intergenic 20.0%
!! TTATTTGATCATTGAATTCA+AGG + chr1_2:9211768-9211787 Msa0054480:three_prime_UTR 20.0%
!!! GAACTTTGAACTTAAAATTT+TGG + chr1_2:9211890-9211909 Msa0054480:three_prime_UTR 20.0%
!! AACATACAAATACATTATCT+GGG - chr1_2:9211955-9211974 None:intergenic 20.0%
!! TAACATACAAATACATTATC+TGG - chr1_2:9211956-9211975 None:intergenic 20.0%
!!! TGCAGTATTATATTTTTGTT+TGG + chr1_2:9211990-9212009 Msa0054480:three_prime_UTR 20.0%
!!! CTAAATAAAATCCATTTTGT+TGG + chr1_2:9212034-9212053 Msa0054480:three_prime_UTR 20.0%
!!! GTTTGAGAATTTTTAGTTTA+TGG + chr1_2:9212061-9212080 Msa0054480:three_prime_UTR 20.0%
!!! GAATTTTTAGTTTATGGTTA+TGG + chr1_2:9212067-9212086 Msa0054480:three_prime_UTR 20.0%
! AAACTGAATTGAAAACTGAA+AGG + chr1_2:9204895-9204914 Msa0054480:five_prime_UTR 25.0%
! AACTGAATTGAAAACTGAAA+GGG + chr1_2:9204896-9204915 Msa0054480:five_prime_UTR 25.0%
!!! TTGTTTCTCTGTTTTTATAC+TGG - chr1_2:9204932-9204951 None:intergenic 25.0%
!! TTTAGAGGTTTTCAAAAACA+AGG - chr1_2:9204969-9204988 None:intergenic 25.0%
! ATTCAAGTGTATAATCTTGA+CGG - chr1_2:9205048-9205067 None:intergenic 25.0%
! TACGAAAAATTAGGTTAACT+TGG + chr1_2:9205232-9205251 Msa0054480:intron 25.0%
! ACGAAAAATTAGGTTAACTT+GGG + chr1_2:9205233-9205252 Msa0054480:intron 25.0%
!! ATAAGCGATTTTTATAGCAA+AGG + chr1_2:9205332-9205351 Msa0054480:intron 25.0%
!!! CGTTAAATTGTTTTGGTATA+TGG + chr1_2:9205364-9205383 Msa0054480:intron 25.0%
! ATTGCTTTACTTGTATAATC+AGG + chr1_2:9205630-9205649 Msa0054480:intron 25.0%
!!! TTGTATAATCAGGTTTTGTT+GGG + chr1_2:9205640-9205659 Msa0054480:intron 25.0%
! ATTTGCTTCTTTGTTCTATT+CGG + chr1_2:9205757-9205776 Msa0054480:intron 25.0%
! TTATTGCTTGATTAGATTGT+TGG + chr1_2:9205798-9205817 Msa0054480:intron 25.0%
! TATTGCTTGATTAGATTGTT+GGG + chr1_2:9205799-9205818 Msa0054480:intron 25.0%
! GAGAATAAAATAAACATAGC+GGG + chr1_2:9205839-9205858 Msa0054480:intron 25.0%
! AGAATAAAATAAACATAGCG+GGG + chr1_2:9205840-9205859 Msa0054480:intron 25.0%
!! CATTTCAAGATTTTCTACTA+TGG - chr1_2:9205941-9205960 None:intergenic 25.0%
!! TTTGAACTTTTGACATTGTA+AGG + chr1_2:9206084-9206103 Msa0054480:intron 25.0%
!! TTGAACTTTTGACATTGTAA+GGG + chr1_2:9206085-9206104 Msa0054480:intron 25.0%
! TGATAGATAAACAACTGAAA+CGG + chr1_2:9206118-9206137 Msa0054480:intron 25.0%
!! ATTTAAAACCTTGAAAACAG+TGG + chr1_2:9206510-9206529 Msa0054480:intron 25.0%
!! TCAAGATTCAAAGTGTATTT+TGG + chr1_2:9206586-9206605 Msa0054480:intron 25.0%
! ATATATCAGGGAAAAAACTA+GGG + chr1_2:9206615-9206634 Msa0054480:intron 25.0%
!! CATTAAAGTATTAGTTTCTG+GGG - chr1_2:9206802-9206821 None:intergenic 25.0%
!! CACATTAAAGTATTAGTTTC+TGG - chr1_2:9206804-9206823 None:intergenic 25.0%
! ACTAATACTTTAATGTGCAT+AGG + chr1_2:9206807-9206826 Msa0054480:intron 25.0%
!! GTTGGTTGATATTGTAAAAT+TGG + chr1_2:9206831-9206850 Msa0054480:CDS 25.0%
! GTAAAATTGGTACAAAAGAA+AGG + chr1_2:9206844-9206863 Msa0054480:CDS 25.0%
! AATGATAAAAAATATGGGTC+AGG + chr1_2:9206910-9206929 Msa0054480:CDS 25.0%
!! ATTTCTAAAGACATTCTCAA+CGG + chr1_2:9206975-9206994 Msa0054480:CDS 25.0%
!! TTTAACTTTATATCTAGGGA+AGG - chr1_2:9207030-9207049 None:intergenic 25.0%
!!! GGCTTTTAACTTTATATCTA+GGG - chr1_2:9207034-9207053 None:intergenic 25.0%
! TTTAGGAAAGGATATAAATC+AGG - chr1_2:9207059-9207078 None:intergenic 25.0%
! CTCGTAAAATATAGAAAAGA+TGG - chr1_2:9207275-9207294 None:intergenic 25.0%
! CTGGTAAAATATAGAAAAGA+TGG - chr1_2:9207321-9207340 None:intergenic 25.0%
! TCAATTATTGGTACTATAAC+TGG - chr1_2:9207340-9207359 None:intergenic 25.0%
!!! GTTTTCTGTGTATTTTTTTG+AGG + chr1_2:9207408-9207427 Msa0054480:intron 25.0%
! TAAAAAATGTTGAACCCTTA+AGG - chr1_2:9207500-9207519 None:intergenic 25.0%
! AACTAATAATGAAAAAGTGG+CGG - chr1_2:9207539-9207558 None:intergenic 25.0%
! TGGAACTAATAATGAAAAAG+TGG - chr1_2:9207542-9207561 None:intergenic 25.0%
!! CTTGTAAGTCAACTTTTATA+TGG - chr1_2:9207637-9207656 None:intergenic 25.0%
! TAGGTTCAACATTCAAATTT+GGG - chr1_2:9207682-9207701 None:intergenic 25.0%
! TTAGGTTCAACATTCAAATT+TGG - chr1_2:9207683-9207702 None:intergenic 25.0%
! CAGAAAGTAATATTAGAAGA+TGG - chr1_2:9207764-9207783 None:intergenic 25.0%
!! TAGGAAGCGTAAAAAATAAT+TGG - chr1_2:9207790-9207809 None:intergenic 25.0%
! AATAATCCATTGGATACATA+GGG - chr1_2:9207969-9207988 None:intergenic 25.0%
! TAACAAACCTTATCAATAGA+TGG - chr1_2:9207997-9208016 None:intergenic 25.0%
!!! GTTATATTCTATTTTTCTCG+AGG - chr1_2:9208163-9208182 None:intergenic 25.0%
! GAAAATAACACAGAAAAAAG+TGG + chr1_2:9208194-9208213 Msa0054480:intron 25.0%
!!! ACATGGTCTTTTTTTTTTGA+AGG + chr1_2:9208229-9208248 Msa0054480:intron 25.0%
!!! CAAACCCTTATTTTTTTTTC+AGG + chr1_2:9208556-9208575 Msa0054480:intron 25.0%
! AATTGCATTATAGATTGCTA+AGG - chr1_2:9208717-9208736 None:intergenic 25.0%
!! ATCATATAGTAAAAGGTGTA+AGG - chr1_2:9208975-9208994 None:intergenic 25.0%
! AGTGATAAACCTTAAGAAAA+AGG + chr1_2:9209132-9209151 Msa0054480:CDS 25.0%
! GAGGTAATGTAATTTAATGA+TGG + chr1_2:9209262-9209281 Msa0054480:intron 25.0%
!! CAAACGAAACAATTTCTTTT+CGG + chr1_2:9209361-9209380 Msa0054480:intron 25.0%
!! AAACGAAACAATTTCTTTTC+GGG + chr1_2:9209362-9209381 Msa0054480:intron 25.0%
!!! ATTACACAAACTTGTTAAAC+CGG + chr1_2:9209420-9209439 Msa0054480:CDS 25.0%
! AGTTTATATAATGATCTACG+TGG + chr1_2:9209660-9209679 Msa0054480:CDS 25.0%
! TTAGTAAACAAAATGAAACC+AGG - chr1_2:9209775-9209794 None:intergenic 25.0%
! TGAATTATTAGTATGAGTTG+TGG + chr1_2:9209978-9209997 Msa0054480:intron 25.0%
! TATACAATACAATGACTTAC+AGG - chr1_2:9210354-9210373 None:intergenic 25.0%
!!! TTGTATACTTTTTTCAGTAC+CGG + chr1_2:9210367-9210386 Msa0054480:intron 25.0%
! TTGTAGTTATACAGTTAAAC+TGG + chr1_2:9210391-9210410 Msa0054480:intron 25.0%
!!! GGACTTTAAAATTTATCCTT+CGG + chr1_2:9210659-9210678 Msa0054480:intron 25.0%
!! TTGGTTCTTAAAAATAGCTA+AGG - chr1_2:9210795-9210814 None:intergenic 25.0%
! ATTGTATATGTACCTTTGTT+TGG - chr1_2:9210856-9210875 None:intergenic 25.0%
! GAAATAGAAAATATGGATTC+AGG - chr1_2:9210981-9211000 None:intergenic 25.0%
!!! GTTATTTTTCCATCAGATTT+TGG - chr1_2:9211053-9211072 None:intergenic 25.0%
! AGTTTATTTGTTCGGAAAAT+GGG + chr1_2:9211298-9211317 Msa0054480:CDS 25.0%
!! ATTTTTACTTTCTTGTTCTC+GGG - chr1_2:9211391-9211410 None:intergenic 25.0%
!! CATTTTTACTTTCTTGTTCT+CGG - chr1_2:9211392-9211411 None:intergenic 25.0%
! CAAAGTTCGAATTGATAAAA+AGG - chr1_2:9211878-9211897 None:intergenic 25.0%
TCCTTATAAAATGAAAGACG+TGG - chr1_2:9204876-9204895 None:intergenic 30.0%
!! AAACCTCTAAAACCCTAATT+TGG + chr1_2:9204978-9204997 Msa0054480:five_prime_UTR 30.0%
TTGAGGATTTCTCCAAATTA+GGG - chr1_2:9204993-9205012 None:intergenic 30.0%
!! ATAAGCAGAAAGTTTGTTAC+CGG - chr1_2:9205116-9205135 None:intergenic 30.0%
!! TGATTTTCTGGAAATATAGG+TGG + chr1_2:9205193-9205212 Msa0054480:intron 30.0%
! CGAAAAATTAGGTTAACTTG+GGG + chr1_2:9205234-9205253 Msa0054480:intron 30.0%
AAATAAGCTGTTATCCAAAC+AGG - chr1_2:9205260-9205279 None:intergenic 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - chr1_2:9205492-9205511 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr1_2:9205493-9205512 None:intergenic 30.0%
CTTCTAACTCATCACTAAAT+TGG - chr1_2:9205585-9205604 None:intergenic 30.0%
ATTTAGTGATGAGTTAGAAG+CGG + chr1_2:9205585-9205604 Msa0054480:intron 30.0%
!! CTTGTATAATCAGGTTTTGT+TGG + chr1_2:9205639-9205658 Msa0054480:intron 30.0%
ATTCTTACGTCAATTCGATA+TGG + chr1_2:9205668-9205687 Msa0054480:exon 30.0%
AAGAAGCAAATGCAAAACAA+AGG - chr1_2:9205748-9205767 None:intergenic 30.0%
! TGAACTTTTGACATTGTAAG+GGG + chr1_2:9206086-9206105 Msa0054480:intron 30.0%
!! TTGGGTTCAAGTTTTGTAAA+TGG + chr1_2:9206336-9206355 Msa0054480:intron 30.0%
AACAAATGTAGCCACAATTA+CGG - chr1_2:9206433-9206452 None:intergenic 30.0%
CATATATCAGGGAAAAAACT+AGG + chr1_2:9206614-9206633 Msa0054480:intron 30.0%
GAAAAACAAAAGGCTAACAA+AGG - chr1_2:9206759-9206778 None:intergenic 30.0%
!!! TTGTTAGCCTTTTGTTTTTC+CGG + chr1_2:9206759-9206778 Msa0054480:intron 30.0%
!!! GGGCTTTTAACTTTATATCT+AGG - chr1_2:9207035-9207054 None:intergenic 30.0%
CTCAATATTTGAGTCAAAAC+TGG - chr1_2:9207382-9207401 None:intergenic 30.0%
! GATAATGCATAAAGGTACAA+TGG - chr1_2:9207562-9207581 None:intergenic 30.0%
! TAAGTCAACTTTTATATGGC+AGG - chr1_2:9207633-9207652 None:intergenic 30.0%
TACGGTTAGAAAAACATAGT+AGG - chr1_2:9207904-9207923 None:intergenic 30.0%
! GTTTTTCTAACCGTAACTTT+TGG + chr1_2:9207909-9207928 Msa0054480:intron 30.0%
GAATAATCCATTGGATACAT+AGG - chr1_2:9207970-9207989 None:intergenic 30.0%
! TTACCATTTTGAATGCACAT+AGG - chr1_2:9208052-9208071 None:intergenic 30.0%
TCTATAAATTCAACAAGGAC+TGG - chr1_2:9208075-9208094 None:intergenic 30.0%
GTGTGTCTATAAATTCAACA+AGG - chr1_2:9208080-9208099 None:intergenic 30.0%
AGTGGACCTTAAAAAAAACA+TGG + chr1_2:9208212-9208231 Msa0054480:intron 30.0%
TTCAGTGCTTGAAAATGAAA+TGG + chr1_2:9208348-9208367 Msa0054480:intron 30.0%
TATGTGCACTGCAATAAAAA+AGG - chr1_2:9208499-9208518 None:intergenic 30.0%
TAAATTTCATCCACAGACAA+TGG - chr1_2:9208535-9208554 None:intergenic 30.0%
TCTATAGATATGGAATACAG+TGG - chr1_2:9208603-9208622 None:intergenic 30.0%
GGAAAATGGGAAATTAAATG+AGG + chr1_2:9208751-9208770 Msa0054480:intron 30.0%
ATTGATAGATATGGAATGGT+AGG + chr1_2:9208834-9208853 Msa0054480:intron 30.0%
ATTGTCCTTGATTTCTCAAT+TGG + chr1_2:9208921-9208940 Msa0054480:intron 30.0%
TGCTACAGTTTATAAGCATT+CGG + chr1_2:9209025-9209044 Msa0054480:intron 30.0%
!!! TTTATGTCACTTTTTTGCTG+TGG + chr1_2:9209092-9209111 Msa0054480:intron 30.0%
!!! TTTTTTGCTGTGGAAAATGA+AGG + chr1_2:9209102-9209121 Msa0054480:intron 30.0%
!! TTTTTGCTGTGGAAAATGAA+GGG + chr1_2:9209103-9209122 Msa0054480:intron 30.0%
TGTTGTAGATCACAATTTAG+AGG + chr1_2:9209243-9209262 Msa0054480:CDS 30.0%
! AACGAAACAATTTCTTTTCG+GGG + chr1_2:9209363-9209382 Msa0054480:intron 30.0%
! AGATGATTTCAGAACTTTTC+AGG + chr1_2:9209393-9209412 Msa0054480:intron 30.0%
AATTACCTGTATATCAGCTA+AGG - chr1_2:9209518-9209537 None:intergenic 30.0%
AGCATTTGAAAGGAAGATAA+AGG - chr1_2:9209563-9209582 None:intergenic 30.0%
TCCTTTCAAATGCTTAATGA+AGG + chr1_2:9209569-9209588 Msa0054480:intron 30.0%
TCCTTCATTAAGCATTTGAA+AGG - chr1_2:9209573-9209592 None:intergenic 30.0%
ATGAAGAAGTTGTTATCCAA+TGG + chr1_2:9209618-9209637 Msa0054480:CDS 30.0%
TAAACTGTGTCCAACTAATA+TGG - chr1_2:9209646-9209665 None:intergenic 30.0%
AACCAGGAAAAATAACACAA+CGG - chr1_2:9209759-9209778 None:intergenic 30.0%
AATCATAATATTCGCATTGC+GGG - chr1_2:9209934-9209953 None:intergenic 30.0%
GAATCATAATATTCGCATTG+CGG - chr1_2:9209935-9209954 None:intergenic 30.0%
CTTGTGAGTTTGTATTTGTA+TGG - chr1_2:9210115-9210134 None:intergenic 30.0%
ACAAACTCACAAGCAAATTA+CGG + chr1_2:9210122-9210141 Msa0054480:intron 30.0%
GAGGTAAGATAAATGAAAGA+TGG + chr1_2:9210144-9210163 Msa0054480:intron 30.0%
! ATCTTTGTAACAGTCTGTTT+TGG + chr1_2:9210200-9210219 Msa0054480:intron 30.0%
! TCTTTGTAACAGTCTGTTTT+GGG + chr1_2:9210201-9210220 Msa0054480:intron 30.0%
TAAGCCATTTCCATTAACAT+TGG + chr1_2:9210320-9210339 Msa0054480:CDS 30.0%
TGAACCAATGTTAATGGAAA+TGG - chr1_2:9210327-9210346 None:intergenic 30.0%
!!! TGTATACTTTTTTCAGTACC+GGG + chr1_2:9210368-9210387 Msa0054480:intron 30.0%
TTAACTGTATAACTACAACC+CGG - chr1_2:9210389-9210408 None:intergenic 30.0%
AGTTATACAGTTAAACTGGT+TGG + chr1_2:9210395-9210414 Msa0054480:intron 30.0%
ACATGAATGTCTTCAATTTG+AGG + chr1_2:9210638-9210657 Msa0054480:intron 30.0%
!! TATTTTTAAGAACCAACGAG+AGG + chr1_2:9210799-9210818 Msa0054480:CDS 30.0%
! AAATATGGATTCAGGTATTG+TGG - chr1_2:9210973-9210992 None:intergenic 30.0%
! TTTTTCCATCAGATTTTGGA+AGG - chr1_2:9211049-9211068 None:intergenic 30.0%
CTTATGCCTGTTCAAAAAAA+CGG + chr1_2:9211078-9211097 Msa0054480:intron 30.0%
!!! GTATATCCGTTTTTTTGAAC+AGG - chr1_2:9211087-9211106 None:intergenic 30.0%
! AAGCATAGTTAATCCCTTTT+GGG + chr1_2:9211162-9211181 Msa0054480:intron 30.0%
!! ACACTGGTTTGATCAAAAAA+GGG - chr1_2:9211199-9211218 None:intergenic 30.0%
!! AACACTGGTTTGATCAAAAA+AGG - chr1_2:9211200-9211219 None:intergenic 30.0%
TGAGTGTCAGTTTATTTGTT+CGG + chr1_2:9211290-9211309 Msa0054480:CDS 30.0%
CAGTTTATTTGTTCGGAAAA+TGG + chr1_2:9211297-9211316 Msa0054480:CDS 30.0%
!!! TCTTAGATGGCATTTTTTTG+TGG - chr1_2:9211336-9211355 None:intergenic 30.0%
CGAGAACAAGAAAGTAAAAA+TGG + chr1_2:9211390-9211409 Msa0054480:CDS 30.0%
! TGTTTCAATCTCTTTCAAGT+AGG - chr1_2:9211437-9211456 None:intergenic 30.0%
AGTGGATCATGAAATTGAAA+AGG + chr1_2:9211555-9211574 Msa0054480:CDS 30.0%
AATTACTGCTCTGCATAAAA+TGG + chr1_2:9211678-9211697 Msa0054480:CDS 30.0%
TGGTAGCTAACATACAAAAA+AGG + chr1_2:9211698-9211717 Msa0054480:CDS 30.0%
GCAAAAACCTAAAAAGTAGT+AGG + chr1_2:9211720-9211739 Msa0054480:exon 30.0%
CTGCTATTCTTATAAAACAC+TGG + chr1_2:9211792-9211811 Msa0054480:three_prime_UTR 30.0%
AGTTGTAAGTTTCATCCAAA+CGG - chr1_2:9211831-9211850 None:intergenic 30.0%
CTCAAACAAATCCAACAAAA+TGG - chr1_2:9212048-9212067 None:intergenic 30.0%
! GCCACGTCTTTCATTTTATA+AGG + chr1_2:9204872-9204891 Msa0054480:five_prime_UTR 35.0%
!! TCTCCAAATTAGGGTTTTAG+AGG - chr1_2:9204984-9205003 None:intergenic 35.0%
GTTGAGGATTTCTCCAAATT+AGG - chr1_2:9204994-9205013 None:intergenic 35.0%
TCAAATAAGCCAATCTAGAC+AGG + chr1_2:9205526-9205545 Msa0054480:intron 35.0%
TTTAGTGATGAGTTAGAAGC+GGG + chr1_2:9205586-9205605 Msa0054480:intron 35.0%
CAAAACAAAGGAGATACTGT+AGG - chr1_2:9205736-9205755 None:intergenic 35.0%
TATTCAATCTGTGACACTCA+TGG - chr1_2:9206012-9206031 None:intergenic 35.0%
GATAAACAACTGAAACGGAA+AGG + chr1_2:9206123-9206142 Msa0054480:intron 35.0%
! AAAGGACTTTTCTCACTAAC+TGG + chr1_2:9206141-9206160 Msa0054480:intron 35.0%
ATGAATGCATAACAGTACCA+TGG - chr1_2:9206205-9206224 None:intergenic 35.0%
!!! TGTTTTTTATCAGCGAGTTC+TGG + chr1_2:9206275-9206294 Msa0054480:intron 35.0%
AACCCAATACCTTGTTCAAA+GGG - chr1_2:9206323-9206342 None:intergenic 35.0%
TTAAATTCTGATTGAAGCCG+CGG - chr1_2:9206496-9206515 None:intergenic 35.0%
! CGACTAATCTGATTTGAACT+AGG - chr1_2:9206562-9206581 None:intergenic 35.0%
! TTTTTGATGTATACACCTGC+TGG + chr1_2:9206711-9206730 Msa0054480:intron 35.0%
TTTCATTCATCTAAACCAGC+AGG - chr1_2:9206729-9206748 None:intergenic 35.0%
AACTAGACCGGAAAAACAAA+AGG - chr1_2:9206769-9206788 None:intergenic 35.0%
!! AGTATTAGTTTCTGGGGTTA+AGG - chr1_2:9206796-9206815 None:intergenic 35.0%
ACTTTAATGTGCATAGGTGT+TGG + chr1_2:9206813-9206832 Msa0054480:intron 35.0%
! GTACAAAAGAAAGGCATGAA+GGG + chr1_2:9206853-9206872 Msa0054480:CDS 35.0%
! AAAGGCATGAAGGGTAAAAT+GGG + chr1_2:9206862-9206881 Msa0054480:CDS 35.0%
GGAAAGGATATAAATCAGGA+GGG - chr1_2:9207055-9207074 None:intergenic 35.0%
AGGAAAGGATATAAATCAGG+AGG - chr1_2:9207056-9207075 None:intergenic 35.0%
GGGCGATTAACTTTATCTTT+AGG - chr1_2:9207076-9207095 None:intergenic 35.0%
GAAAATGAGTAAGACTGATC+TGG - chr1_2:9207100-9207119 None:intergenic 35.0%
!!! TCTTCTTGTGCTCAGTTTTT+TGG + chr1_2:9207118-9207137 Msa0054480:intron 35.0%
!!! AGTTTTTTGGCAACATCATG+CGG + chr1_2:9207131-9207150 Msa0054480:intron 35.0%
TATGAAAACATACCTGCTCA+GGG - chr1_2:9207210-9207229 None:intergenic 35.0%
TTATGAAAACATACCTGCTC+AGG - chr1_2:9207211-9207230 None:intergenic 35.0%
TTCTTACTTCACCATCCTTA+AGG + chr1_2:9207482-9207501 Msa0054480:intron 35.0%
TCTTACTTCACCATCCTTAA+GGG + chr1_2:9207483-9207502 Msa0054480:intron 35.0%
AAATGTTGAACCCTTAAGGA+TGG - chr1_2:9207496-9207515 None:intergenic 35.0%
! GTCGTGGTCTATTGAATTTT+AGG - chr1_2:9207701-9207720 None:intergenic 35.0%
TTCGTTGCCATCTATTGATA+AGG + chr1_2:9207987-9208006 Msa0054480:CDS 35.0%
! AACTCTGATCTCCTATTTTC+TGG + chr1_2:9208022-9208041 Msa0054480:intron 35.0%
CAAGTCAAGAAGTTCACATT+AGG - chr1_2:9208105-9208124 None:intergenic 35.0%
CATGACCAATTGAGAAATCA+AGG - chr1_2:9208929-9208948 None:intergenic 35.0%
GCTACAGTTTATAAGCATTC+GGG + chr1_2:9209026-9209045 Msa0054480:intron 35.0%
AACCTTAAGAAAAAGGCCAA+AGG + chr1_2:9209139-9209158 Msa0054480:CDS 35.0%
ACCTTAAGAAAAAGGCCAAA+GGG + chr1_2:9209140-9209159 Msa0054480:CDS 35.0%
AAATGGTTCTCTGTGAAGAT+GGG + chr1_2:9209197-9209216 Msa0054480:CDS 35.0%
! TGATGGTTCTTCCTTTTACT+CGG + chr1_2:9209279-9209298 Msa0054480:intron 35.0%
TAGTCTTTGATTGCTTTCTC+CGG - chr1_2:9209442-9209461 None:intergenic 35.0%
GACTACAAAACAGAGATTAC+TGG + chr1_2:9209457-9209476 Msa0054480:CDS 35.0%
TCCAATGGAACCATATTAGT+TGG + chr1_2:9209633-9209652 Msa0054480:CDS 35.0%
TCCAACTAATATGGTTCCAT+TGG - chr1_2:9209637-9209656 None:intergenic 35.0%
! AGTGTCGTGAACATTTTGTT+TGG + chr1_2:9209685-9209704 Msa0054480:intron 35.0%
TTTGTTTGGCTGTCTTTGAA+TGG + chr1_2:9209699-9209718 Msa0054480:intron 35.0%
TCTACAACGAAATTAGCAGT+AGG - chr1_2:9209725-9209744 None:intergenic 35.0%
!!! TTCCGTTGTGTTATTTTTCC+TGG + chr1_2:9209754-9209773 Msa0054480:intron 35.0%
GAAGCTTGATTATGTTAGAG+TGG + chr1_2:9209815-9209834 Msa0054480:CDS 35.0%
TGACACAAACTATTCAACGA+AGG - chr1_2:9209891-9209910 None:intergenic 35.0%
! TTCGTTGAATAGTTTGTGTC+AGG + chr1_2:9209890-9209909 Msa0054480:intron 35.0%
TAGTATGAGTTGTGGTCATA+TGG + chr1_2:9209986-9210005 Msa0054480:intron 35.0%
TGGTCATATGGTTATTCCTT+TGG + chr1_2:9209998-9210017 Msa0054480:intron 35.0%
TCATATGGTTATTCCTTTGG+AGG + chr1_2:9210001-9210020 Msa0054480:intron 35.0%
GTTCTTGCAAAGATCAAACA+TGG + chr1_2:9210291-9210310 Msa0054480:CDS 35.0%
!!! GTTTGCTGTTCTCTCATTTT+AGG + chr1_2:9210435-9210454 Msa0054480:intron 35.0%
TTAGGTTTCAGAAAGTGAGA+TGG + chr1_2:9210453-9210472 Msa0054480:intron 35.0%
AGAGGTTCATCCGTAATTAT+TGG + chr1_2:9210611-9210630 Msa0054480:intron 35.0%
!!! CTGGGCTATTTTTCTTGTTT+GGG + chr1_2:9210707-9210726 Msa0054480:intron 35.0%
GATGCATATGAAAATGTCCA+AGG + chr1_2:9210827-9210846 Msa0054480:CDS 35.0%
! ATTCGTTTGTTGATTAGCTG+AGG + chr1_2:9210913-9210932 Msa0054480:intron 35.0%
! TTCGTTTGTTGATTAGCTGA+GGG + chr1_2:9210914-9210933 Msa0054480:intron 35.0%
ATTCTCCTTCCAAAATCTGA+TGG + chr1_2:9211041-9211060 Msa0054480:intron 35.0%
!!! CGTTTTTTTGAACAGGCATA+AGG - chr1_2:9211080-9211099 None:intergenic 35.0%
! GAAGCATAGTTAATCCCTTT+TGG + chr1_2:9211161-9211180 Msa0054480:intron 35.0%
!! ACTGGTTTGATCAAAAAAGG+GGG - chr1_2:9211197-9211216 None:intergenic 35.0%
!! CACTGGTTTGATCAAAAAAG+GGG - chr1_2:9211198-9211217 None:intergenic 35.0%
TGTTGTGCATTACTTTGTGT+AGG + chr1_2:9211216-9211235 Msa0054480:intron 35.0%
TACTTTGTGTAGGACTCAAA+TGG + chr1_2:9211226-9211245 Msa0054480:intron 35.0%
ACTTTGTGTAGGACTCAAAT+GGG + chr1_2:9211227-9211246 Msa0054480:intron 35.0%
TCTGGTAAATCTCTCTTAGA+TGG - chr1_2:9211349-9211368 None:intergenic 35.0%
ATCTAAGAGAGATTTACCAG+AGG + chr1_2:9211348-9211367 Msa0054480:CDS 35.0%
TCTAAGAGAGATTTACCAGA+GGG + chr1_2:9211349-9211368 Msa0054480:CDS 35.0%
AATGGATCCTGAAGTTGAAA+AGG + chr1_2:9211408-9211427 Msa0054480:CDS 35.0%
AATCATTGAGAGAACAGTTG+AGG + chr1_2:9211494-9211513 Msa0054480:CDS 35.0%
! TGCTTCAATCTCTTTCAAGT+GGG - chr1_2:9211584-9211603 None:intergenic 35.0%
CTTCACTTTCTTTCAATCGT+TGG - chr1_2:9211612-9211631 None:intergenic 35.0%
ACGATTGAAAGAAAGTGAAG+CGG + chr1_2:9211612-9211631 Msa0054480:CDS 35.0%
AACCTAAAAAGTAGTAGGCA+TGG + chr1_2:9211725-9211744 Msa0054480:exon 35.0%
ATTCCTTCGAAACCATTCAC+CGG + chr1_2:9205017-9205036 Msa0054480:five_prime_UTR 40.0%
CAAGTGTATAATCTTGACGG+CGG - chr1_2:9205045-9205064 None:intergenic 40.0%
ACTGAACTGAATGAAGGGAA+AGG - chr1_2:9205091-9205110 None:intergenic 40.0%
TTAGTGATGAGTTAGAAGCG+GGG + chr1_2:9205587-9205606 Msa0054480:intron 40.0%
! GAAAGTTACCTTCTTTTCCG+CGG - chr1_2:9205709-9205728 None:intergenic 40.0%
TGCTTGATTAGATTGTTGGG+TGG + chr1_2:9205802-9205821 Msa0054480:intron 40.0%
ATGTGTGGTAAGACTAGACA+AGG + chr1_2:9205863-9205882 Msa0054480:intron 40.0%
!! GAGTTCTGGTTCTAGTGATA+AGG + chr1_2:9206289-9206308 Msa0054480:intron 40.0%
ACCCAATACCTTGTTCAAAG+GGG - chr1_2:9206322-9206341 None:intergenic 40.0%
GAACCCAATACCTTGTTCAA+AGG - chr1_2:9206324-9206343 None:intergenic 40.0%
! CAAAACTGCCACTGTTTTCA+AGG - chr1_2:9206521-9206540 None:intergenic 40.0%
GAACTAGGTAAACCCACTTA+CGG - chr1_2:9206547-9206566 None:intergenic 40.0%
GGTTAAGGAGAAAACTAGAC+CGG - chr1_2:9206781-9206800 None:intergenic 40.0%
! GGTACAAAAGAAAGGCATGA+AGG + chr1_2:9206852-9206871 Msa0054480:CDS 40.0%
! GAAAGGCATGAAGGGTAAAA+TGG + chr1_2:9206861-9206880 Msa0054480:CDS 40.0%
AAATGCAGCCAAAACCTCAT+GGG - chr1_2:9206959-9206978 None:intergenic 40.0%
AAAGACATTCTCAACGGATG+AGG + chr1_2:9206981-9207000 Msa0054480:CDS 40.0%
ATGAGTAAGACTGATCTGGA+GGG - chr1_2:9207096-9207115 None:intergenic 40.0%
AATGAGTAAGACTGATCTGG+AGG - chr1_2:9207097-9207116 None:intergenic 40.0%
ATGAAAACATACCTGCTCAG+GGG - chr1_2:9207209-9207228 None:intergenic 40.0%
CATCAGACAATTATCAGTCG+TGG - chr1_2:9207717-9207736 None:intergenic 40.0%
ATCAGTCACAAGCACATAGT+AGG - chr1_2:9207809-9207828 None:intergenic 40.0%
TATGTGCTTGTGACTGATGA+TGG + chr1_2:9207811-9207830 Msa0054480:intron 40.0%
ATGTGCTTGTGACTGATGAT+GGG + chr1_2:9207812-9207831 Msa0054480:intron 40.0%
CTCTGTGATGCCAAAAGTTA+CGG - chr1_2:9207922-9207941 None:intergenic 40.0%
GATGGCAACGAATAATCCAT+TGG - chr1_2:9207979-9207998 None:intergenic 40.0%
ACATAGGCTGACCAGAAAAT+AGG - chr1_2:9208036-9208055 None:intergenic 40.0%
CAGCCTATGTGCATTCAAAA+TGG + chr1_2:9208046-9208065 Msa0054480:intron 40.0%
ATTTCATCCACAGACAATGG+TGG - chr1_2:9208532-9208551 None:intergenic 40.0%
TTTCAACTGTAGCCTCTGTT+AGG + chr1_2:9208684-9208703 Msa0054480:intron 40.0%
!! TCCCTTTGGCCTTTTTCTTA+AGG - chr1_2:9209144-9209163 None:intergenic 40.0%
TGTGGTAGATCTTATCCCTT+TGG - chr1_2:9209158-9209177 None:intergenic 40.0%
AGGGATAAGATCTACCACAA+TGG + chr1_2:9209159-9209178 Msa0054480:CDS 40.0%
ACAATCAACAGCAACCATTG+TGG - chr1_2:9209176-9209195 None:intergenic 40.0%
! GGTTGCTGTTGATTGTGAAA+TGG + chr1_2:9209180-9209199 Msa0054480:CDS 40.0%
GAAATGGTTCTCTGTGAAGA+TGG + chr1_2:9209196-9209215 Msa0054480:CDS 40.0%
TTGCTCCTTAGCTGATATAC+AGG + chr1_2:9209510-9209529 Msa0054480:CDS 40.0%
GTGTAACGAAATTCCTCCAA+AGG - chr1_2:9210017-9210036 None:intergenic 40.0%
AACTCACAAGCAAATTACGG+AGG + chr1_2:9210125-9210144 Msa0054480:intron 40.0%
!! CTGTTTTGGGCTATGAAGTT+CGG + chr1_2:9210214-9210233 Msa0054480:intron 40.0%
GGCTATGAAGTTCGGAAAAA+GGG + chr1_2:9210222-9210241 Msa0054480:intron 40.0%
GGCTCTTGAACCAATGTTAA+TGG - chr1_2:9210333-9210352 None:intergenic 40.0%
CACTACACGAAATTGTTCCT+GGG + chr1_2:9210521-9210540 Msa0054480:CDS 40.0%
ACTACACGAAATTGTTCCTG+GGG + chr1_2:9210522-9210541 Msa0054480:CDS 40.0%
GGACTTCACAATAGATCGAA+AGG + chr1_2:9210543-9210562 Msa0054480:CDS 40.0%
!! AATGTCAACAAGAGTACCGA+AGG - chr1_2:9210678-9210697 None:intergenic 40.0%
!!! GCTGGGCTATTTTTCTTGTT+TGG + chr1_2:9210706-9210725 Msa0054480:intron 40.0%
TTTCGTGATACCAAAGTAGC+AGG - chr1_2:9210894-9210913 None:intergenic 40.0%
! TCAGGTATTGTGGTAGTGAA+TGG - chr1_2:9210963-9210982 None:intergenic 40.0%
AGGGATTAACTATGCTTCAG+TGG - chr1_2:9211159-9211178 None:intergenic 40.0%
CACAAAGTAATGCACAACAC+TGG - chr1_2:9211215-9211234 None:intergenic 40.0%
! TAGGCATCCTTTTCAACTTC+AGG - chr1_2:9211418-9211437 None:intergenic 40.0%
ACGATTGAAAGAGAGTGAGT+TGG + chr1_2:9211465-9211484 Msa0054480:CDS 40.0%
GAGAGAACAGTTGAGGAAAA+AGG + chr1_2:9211501-9211520 Msa0054480:CDS 40.0%
GAGGAAAAAGGACTTACAAG+TGG + chr1_2:9211513-9211532 Msa0054480:CDS 40.0%
CTTACAAGTGGATGATTCCA+AGG + chr1_2:9211525-9211544 Msa0054480:CDS 40.0%
TGATTCCAAGGAAGGAAAAG+TGG + chr1_2:9211537-9211556 Msa0054480:CDS 40.0%
!! ATGATCCACTTTTCCTTCCT+TGG - chr1_2:9211545-9211564 None:intergenic 40.0%
GTGCTTCAATCTCTTTCAAG+TGG - chr1_2:9211585-9211604 None:intergenic 40.0%
GAGGGAACAGTTGAGAAAAA+AGG + chr1_2:9211648-9211667 Msa0054480:CDS 40.0%
!!! TGCCATGCCTACTACTTTTT+AGG - chr1_2:9211730-9211749 None:intergenic 40.0%
GGCAATGTCTTAAAACCGTT+TGG + chr1_2:9211813-9211832 Msa0054480:three_prime_UTR 40.0%
TTCATCATTCCACTTGCTCA+GGG - chr1_2:9211916-9211935 None:intergenic 40.0%
ATTCATCATTCCACTTGCTC+AGG - chr1_2:9211917-9211936 None:intergenic 40.0%
GTTTCGAAGGAATGTCGTTG+AGG - chr1_2:9205010-9205029 None:intergenic 45.0%
AACTAAGGGCCTGTCTAGAT+TGG - chr1_2:9205538-9205557 None:intergenic 45.0%
! ATAAACATAGCGGGGATGTG+TGG + chr1_2:9205848-9205867 Msa0054480:intron 45.0%
TGTGGTAAGACTAGACAAGG+TGG + chr1_2:9205866-9205885 Msa0054480:intron 45.0%
GTGGTAAGACTAGACAAGGT+GGG + chr1_2:9205867-9205886 Msa0054480:intron 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG + chr1_2:9205908-9205927 Msa0054480:intron 45.0%
TATGTCATTGTGTCCTGCCA+TGG + chr1_2:9206185-9206204 Msa0054480:intron 45.0%
ATGCATAACAGTACCATGGC+AGG - chr1_2:9206201-9206220 None:intergenic 45.0%
! GAGTTTTCCCCCTTTGAACA+AGG + chr1_2:9206311-9206330 Msa0054480:intron 45.0%
TCCCCCTTTGAACAAGGTAT+TGG + chr1_2:9206317-9206336 Msa0054480:intron 45.0%
CCCAATACCTTGTTCAAAGG+GGG - chr1_2:9206321-9206340 None:intergenic 45.0%
! CCCCCTTTGAACAAGGTATT+GGG + chr1_2:9206318-9206337 Msa0054480:intron 45.0%
CACAATTACGGTCATGATGC+TGG - chr1_2:9206421-9206440 None:intergenic 45.0%
CAGCATCATGACCGTAATTG+TGG + chr1_2:9206419-9206438 Msa0054480:intron 45.0%
!! GCAGTTTTGTCTCCGTAAGT+GGG + chr1_2:9206532-9206551 Msa0054480:intron 45.0%
TGAAGGGTAAAATGGGAGAC+TGG + chr1_2:9206869-9206888 Msa0054480:CDS 45.0%
GTATGAGCGATCCATCAAAG+AGG + chr1_2:9206932-9206951 Msa0054480:CDS 45.0%
! AAAGAGGTCCCATGAGGTTT+TGG + chr1_2:9206948-9206967 Msa0054480:CDS 45.0%
GAAATGCAGCCAAAACCTCA+TGG - chr1_2:9206960-9206979 None:intergenic 45.0%
CTCAACGGATGAGGATTTGA+AGG + chr1_2:9206990-9207009 Msa0054480:CDS 45.0%
CTTCCTCTTAAAGCCATACC+CGG + chr1_2:9207441-9207460 Msa0054480:intron 45.0%
! CGTAACTTTTGGCATCACAG+AGG + chr1_2:9207920-9207939 Msa0054480:intron 45.0%
TGCTGTGGAAAATGAAGGGA+TGG + chr1_2:9209107-9209126 Msa0054480:intron 45.0%
TGAAGATGGGACTGAAGCTT+TGG + chr1_2:9209210-9209229 Msa0054480:CDS 45.0%
ATGACGAGTCACCGAGTAAA+AGG - chr1_2:9209293-9209312 None:intergenic 45.0%
AGCGCAATGCCTCAATCTTT+GGG - chr1_2:9209335-9209354 None:intergenic 45.0%
AAGCGCAATGCCTCAATCTT+TGG - chr1_2:9209336-9209355 None:intergenic 45.0%
CTGTGAATAGAGCCATCCAA+GGG - chr1_2:9209864-9209883 None:intergenic 45.0%
GGGCTATGAAGTTCGGAAAA+AGG + chr1_2:9210221-9210240 Msa0054480:intron 45.0%
TAGTGCTTCAGTGTTCACAG+TGG - chr1_2:9210506-9210525 None:intergenic 45.0%
GCACTACACGAAATTGTTCC+TGG + chr1_2:9210520-9210539 Msa0054480:CDS 45.0%
CAGAACAGTGGGATGCTTAA+AGG - chr1_2:9210587-9210606 None:intergenic 45.0%
TTAAGCATCCCACTGTTCTG+AGG + chr1_2:9210587-9210606 Msa0054480:intron 45.0%
AACCTCTTCCTCAGAACAGT+GGG - chr1_2:9210598-9210617 None:intergenic 45.0%
TGTTGACATTCAGTCACTGC+TGG + chr1_2:9210688-9210707 Msa0054480:intron 45.0%
GTTGACATTCAGTCACTGCT+GGG + chr1_2:9210689-9210708 Msa0054480:intron 45.0%
TTGCTTCAGCCTTCCAGAAA+CGG + chr1_2:9210749-9210768 Msa0054480:intron 45.0%
CTTATCTCCTTGACCGTTTC+TGG - chr1_2:9210765-9210784 None:intergenic 45.0%
! ATGCTCAATGCCTGCTACTT+TGG + chr1_2:9210881-9210900 Msa0054480:intron 45.0%
TGCAGAAACTTGTCACGTGT+CGG + chr1_2:9211254-9211273 Msa0054480:CDS 45.0%
CAAGTGGATGATTCCAAGGA+AGG + chr1_2:9211529-9211548 Msa0054480:CDS 45.0%
AAGCGGAGATTGAATCATCG+AGG + chr1_2:9211629-9211648 Msa0054480:CDS 45.0%
AGCGGAGATTGAATCATCGA+GGG + chr1_2:9211630-9211649 Msa0054480:CDS 45.0%
AAAAGTAGTAGGCATGGCAC+TGG + chr1_2:9211731-9211750 Msa0054480:exon 45.0%
!! AAATTTTGGCCCTGAGCAAG+TGG + chr1_2:9211904-9211923 Msa0054480:three_prime_UTR 45.0%
CGGCGACTGAACTGAATGAA+GGG - chr1_2:9205096-9205115 None:intergenic 50.0%
CCTTCATTCAGTTCAGTCGC+CGG + chr1_2:9205094-9205113 Msa0054480:intron 50.0%
! AGGTTAACTTGGGGCCTGTT+TGG + chr1_2:9205243-9205262 Msa0054480:intron 50.0%
TGAGTTAGAAGCGGGGTTAG+TGG + chr1_2:9205594-9205613 Msa0054480:intron 50.0%
! GAGTTAGAAGCGGGGTTAGT+GGG + chr1_2:9205595-9205614 Msa0054480:intron 50.0%
GGATGAGAAGATTGACACCG+CGG + chr1_2:9205689-9205708 Msa0054480:CDS 50.0%
GATTGACACCGCGGAAAAGA+AGG + chr1_2:9205698-9205717 Msa0054480:CDS 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG + chr1_2:9205907-9205926 Msa0054480:intron 50.0%
GAGAGAGAGAGAGAGAGTTG+GGG + chr1_2:9205909-9205928 Msa0054480:intron 50.0%
GCGTGCTGCAATCTCTTGAA+TGG - chr1_2:9206467-9206486 None:intergenic 50.0%
!! GGCAGTTTTGTCTCCGTAAG+TGG + chr1_2:9206531-9206550 Msa0054480:intron 50.0%
GGGTAAAATGGGAGACTGGA+AGG + chr1_2:9206873-9206892 Msa0054480:CDS 50.0%
TCCATCAAAGAGGTCCCATG+AGG + chr1_2:9206942-9206961 Msa0054480:CDS 50.0%
ACCTCATGGGACCTCTTTGA+TGG - chr1_2:9206946-9206965 None:intergenic 50.0%
!! CGGGTATGGCTTTAAGAGGA+AGG - chr1_2:9207443-9207462 None:intergenic 50.0%
AAGCCAAAGACACATGCAGC+CGG - chr1_2:9207463-9207482 None:intergenic 50.0%
!! TAGGGTGCTGGAGAGTTACT+TGG - chr1_2:9207951-9207970 None:intergenic 50.0%
CCATTGGATACATAGGGTGC+TGG - chr1_2:9207963-9207982 None:intergenic 50.0%
CCAGCACCCTATGTATCCAA+TGG + chr1_2:9207960-9207979 Msa0054480:CDS 50.0%
!! AAAAGCGCCACCATTGTCTG+TGG + chr1_2:9208522-9208541 Msa0054480:intron 50.0%
TGTAGCCTCTGTTAGGAGAG+AGG + chr1_2:9208691-9208710 Msa0054480:intron 50.0%
TAAGGCCTCTCTCCTAACAG+AGG - chr1_2:9208699-9208718 None:intergenic 50.0%
TTTGGGCAGGTAGGGAAGAA+GGG - chr1_2:9209318-9209337 None:intergenic 50.0%
CCTCAATCTTTGGGCAGGTA+GGG - chr1_2:9209326-9209345 None:intergenic 50.0%
CAATGCCTCAATCTTTGGGC+AGG - chr1_2:9209331-9209350 None:intergenic 50.0%
GAATAGAGCCATCCAAGGGT+TGG - chr1_2:9209860-9209879 None:intergenic 50.0%
CCTGTGAATAGAGCCATCCA+AGG - chr1_2:9209865-9209884 None:intergenic 50.0%
! CCTTGGATGGCTCTATTCAC+AGG + chr1_2:9209862-9209881 Msa0054480:CDS 50.0%
ATCTGTGCTTGTCTGCGCTT+TGG + chr1_2:9210073-9210092 Msa0054480:intron 50.0%
GCTTCAGTGTTCACAGTGGT+TGG - chr1_2:9210502-9210521 None:intergenic 50.0%
CGATCTATTGTGAAGTCCCC+AGG - chr1_2:9210541-9210560 None:intergenic 50.0%
!! ATCCCACTGTTCTGAGGAAG+AGG + chr1_2:9210593-9210612 Msa0054480:intron 50.0%
GAACCTCTTCCTCAGAACAG+TGG - chr1_2:9210599-9210618 None:intergenic 50.0%
! TCTCCTTGACCGTTTCTGGA+AGG - chr1_2:9210761-9210780 None:intergenic 50.0%
ATGCATCATGTGCCTCTCGT+TGG - chr1_2:9210814-9210833 None:intergenic 50.0%
TGTCCAAGGCAGCCAAACAA+AGG + chr1_2:9210841-9210860 Msa0054480:CDS 50.0%
! GTACCTTTGTTTGGCTGCCT+TGG - chr1_2:9210847-9210866 None:intergenic 50.0%
AGATTTACCAGAGGGCGAGA+TGG + chr1_2:9211357-9211376 Msa0054480:CDS 50.0%
! GTAGGCATGGCACTGGAATA+TGG + chr1_2:9211738-9211757 Msa0054480:exon 50.0%
TATAATCTTGACGGCGGCGC+CGG - chr1_2:9205039-9205058 None:intergenic 55.0%
CCGGCGACTGAACTGAATGA+AGG - chr1_2:9205097-9205116 None:intergenic 55.0%
CGGTCATGATGCTGGTGCAA+TGG - chr1_2:9206413-9206432 None:intergenic 55.0%
ATCTCACGATTCCCCTGAGC+AGG + chr1_2:9207195-9207214 Msa0054480:CDS 55.0%
!! CAGCCGGGTATGGCTTTAAG+AGG - chr1_2:9207447-9207466 None:intergenic 55.0%
AAGACACATGCAGCCGGGTA+TGG - chr1_2:9207457-9207476 None:intergenic 55.0%
TACCCGGCTGCATGTGTCTT+TGG + chr1_2:9207457-9207476 Msa0054480:intron 55.0%
AGCCAAAGACACATGCAGCC+GGG - chr1_2:9207462-9207481 None:intergenic 55.0%
TTGGGCAGGTAGGGAAGAAG+GGG - chr1_2:9209317-9209336 None:intergenic 55.0%
CTTTGGGCAGGTAGGGAAGA+AGG - chr1_2:9209319-9209338 None:intergenic 55.0%
CCCTACCTGCCCAAAGATTG+AGG + chr1_2:9209323-9209342 Msa0054480:intron 55.0%
GCCTCAATCTTTGGGCAGGT+AGG - chr1_2:9209327-9209346 None:intergenic 55.0%
CAGCCTTCCAGAAACGGTCA+AGG + chr1_2:9210755-9210774 Msa0054480:intron 55.0%
!! TGTCACGTGTCGGCTGAGTA+CGG + chr1_2:9211264-9211283 Msa0054480:CDS 55.0%
ACATCAACCATCTCGCCCTC+TGG - chr1_2:9211367-9211386 None:intergenic 55.0%
! GCGCCGGTGAATGGTTTCGA+AGG - chr1_2:9205023-9205042 None:intergenic 60.0%
TTGCAGCACGCTTGCAACCG+CGG + chr1_2:9206476-9206495 Msa0054480:intron 60.0%
GGGGAGCAGCAAGCCCAAAA+GGG - chr1_2:9211178-9211197 None:intergenic 60.0%
!! GTCACGTGTCGGCTGAGTAC+GGG + chr1_2:9211265-9211284 Msa0054480:CDS 60.0%
GGGGGAGCAGCAAGCCCAAA+AGG - chr1_2:9211179-9211198 None:intergenic 65.0%
!! TTGACGGCGGCGCCGGTGAA+TGG - chr1_2:9205032-9205051 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9204851 9212098 9204851 ID=Msa0054480;Name=Msa0054480
chr1_2 mRNA 9204851 9212098 9204851 ID=Msa0054480-mRNA-1;Parent=Msa0054480;Name=Msa0054480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=259|0.91|0.84|1|0.75|0.69|13|360|540
chr1_2 exon 9204851 9205074 9204851 ID=Msa0054480-mRNA-1:exon:3326;Parent=Msa0054480-mRNA-1
chr1_2 exon 9205652 9205719 9205652 ID=Msa0054480-mRNA-1:exon:3327;Parent=Msa0054480-mRNA-1
chr1_2 exon 9206829 9207011 9206829 ID=Msa0054480-mRNA-1:exon:3328;Parent=Msa0054480-mRNA-1
chr1_2 exon 9207133 9207216 9207133 ID=Msa0054480-mRNA-1:exon:3329;Parent=Msa0054480-mRNA-1
chr1_2 exon 9207940 9208008 9207940 ID=Msa0054480-mRNA-1:exon:3330;Parent=Msa0054480-mRNA-1
chr1_2 exon 9209124 9209264 9209124 ID=Msa0054480-mRNA-1:exon:3331;Parent=Msa0054480-mRNA-1
chr1_2 exon 9209415 9209531 9209415 ID=Msa0054480-mRNA-1:exon:3332;Parent=Msa0054480-mRNA-1
chr1_2 exon 9209612 9209681 9209612 ID=Msa0054480-mRNA-1:exon:3333;Parent=Msa0054480-mRNA-1
chr1_2 exon 9209811 9209900 9209811 ID=Msa0054480-mRNA-1:exon:3334;Parent=Msa0054480-mRNA-1
chr1_2 exon 9210232 9210353 9210232 ID=Msa0054480-mRNA-1:exon:3335;Parent=Msa0054480-mRNA-1
chr1_2 exon 9210457 9210564 9210457 ID=Msa0054480-mRNA-1:exon:3336;Parent=Msa0054480-mRNA-1
chr1_2 exon 9210758 9210862 9210758 ID=Msa0054480-mRNA-1:exon:3337;Parent=Msa0054480-mRNA-1
chr1_2 exon 9211238 9212098 9211238 ID=Msa0054480-mRNA-1:exon:3338;Parent=Msa0054480-mRNA-1
chr1_2 five_prime_UTR 9204851 9205074 9204851 ID=Msa0054480-mRNA-1:five_prime_utr;Parent=Msa0054480-mRNA-1
chr1_2 five_prime_UTR 9205652 9205686 9205652 ID=Msa0054480-mRNA-1:five_prime_utr;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9205687 9205719 9205687 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9206829 9207011 9206829 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9207133 9207216 9207133 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9207940 9208008 9207940 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9209124 9209264 9209124 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9209415 9209531 9209415 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9209612 9209681 9209612 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9209811 9209900 9209811 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9210232 9210353 9210232 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9210457 9210564 9210457 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9210758 9210862 9210758 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 CDS 9211238 9211738 9211238 ID=Msa0054480-mRNA-1:cds;Parent=Msa0054480-mRNA-1
chr1_2 three_prime_UTR 9211739 9212098 9211739 ID=Msa0054480-mRNA-1:three_prime_utr;Parent=Msa0054480-mRNA-1
Gene Sequence

>Msa0054480

ATGGATGAGAAGATTGACACCGCGGAAAAGAAGGTGTTGGTTGATATTGTAAAATTGGTACAAAAGAAAGGCATGAAGGGTAAAATGGGAGACTGGAAGGAATTCCTGAACAGTAATGATAAAAAATATGGGTCAGGTATGAGCGATCCATCAAAGAGGTCCCATGAGGTTTTGGCTGCATTTCTAAAGACATTCTCAACGGATGAGGATTTGAAGTTTTTTGGCAACATCATGCGGCATCATTCAAATCAATACACATTAGAGCGACTGAAAGATAGATCTCACGATTCCCCTGAGCAGAGGCTAGTCCAAGTAACTCTCCAGCACCCTATGTATCCAATGGATTATTCGTTGCCATCTATTGATAAGGGATGGTTAGTGATAAACCTTAAGAAAAAGGCCAAAGGGATAAGATCTACCACAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCTTTGGTCAAAGTCTGTGTTGTAGATCACAATTTAGAGGTCAAATTACACAAACTTGTTAAACCGGAGAAAGCAATCAAAGACTACAAAACAGAGATTACTGGTGTCTCTGCTCAAGATCTAGAGACAGTGACTTGCTCCTTAGCTGATATACAGAAATCGATGAAGAAGTTGTTATCCAATGGAACCATATTAGTTGGACACAGTTTATATAATGATCTACGTGTGCTGAAGCTTGATTATGTTAGAGTGGTCGACACTGCATACATCTTCCAACCCTTGGATGGCTCTATTCACAGGAGACCTTCGTTGAATATTCGGAAAAAGGGTGCTTCGCATGATTGTCTAGATGATGCATGTGCAACAATGAAACTTGTTCTTGCAAAGATCAAACATGGTGTTGATAAGCCATTTCCATTAACATTGGTTCAAGAGCCTGTTTCAGAAAGTGAGATGGCGAAGCTGCTTATTCACAGAATACCAACCACTGTGAACACTGAAGCACTACACGAAATTGTTCCTGGGGACTTCACAATAGATCGAAAGCCTTCCAGAAACGGTCAAGGAGATAAGTATTCTGCCTTAGCTATTTTTAAGAACCAACGAGAGGCACATGATGCATATGAAAATGTCCAAGGCAGCCAAACAAAGGACTCAAATGGGCGTCTGCAGAAACTTGTCACGTGTCGGCTGAGTACGGGCATGAGTGTCAGTTTATTTGTTCGGAAAATGGGAATTGATGATCACCACAAAAAAATGCCATCTAAGAGAGATTTACCAGAGGGCGAGATGGTTGATGTTCCCGAGAACAAGAAAGTAAAAATGGATCCTGAAGTTGAAAAGGATGCCTACTTGAAAGAGATTGAAACACTGAATCAACGATTGAAAGAGAGTGAGTTGGAGATTGAATCATTGAGAGAACAGTTGAGGAAAAAGGACTTACAAGTGGATGATTCCAAGGAAGGAAAAGTGGATCATGAAATTGAAAAGGATGCCCACTTGAAAGAGATTGAAGCACTGAACCAACGATTGAAAGAAAGTGAAGCGGAGATTGAATCATCGAGGGAACAGTTGAGAAAAAAGGACTTCGAAATTACTGCTCTGCATAAAATGGTAGCTAACATACAAAAAAGGCAAAAACCTAAAAAGTAG

Protein sequence

>Msa0054480

MDEKIDTAEKKVLVDIVKLVQKKGMKGKMGDWKEFLNSNDKKYGSGMSDPSKRSHEVLAAFLKTFSTDEDLKFFGNIMRHHSNQYTLERLKDRSHDSPEQRLVQVTLQHPMYPMDYSLPSIDKGWLVINLKKKAKGIRSTTMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDLETVTCSLADIQKSMKKLLSNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHRRPSLNIRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEPVSESEMAKLLIHRIPTTVNTEALHEIVPGDFTIDRKPSRNGQGDKYSALAIFKNQREAHDAYENVQGSQTKDSNGRLQKLVTCRLSTGMSVSLFVRKMGIDDHHKKMPSKRDLPEGEMVDVPENKKVKMDPEVEKDAYLKEIETLNQRLKESELEIESLREQLRKKDLQVDDSKEGKVDHEIEKDAHLKEIEALNQRLKESEAEIESSREQLRKKDFEITALHKMVANIQKRQKPKK*